1be1d678aSKris Buschelman 2b4319ba4SBarry Smith /* 3b4319ba4SBarry Smith Creates a matrix class for using the Neumann-Neumann type preconditioners. 4b4319ba4SBarry Smith This stores the matrices in globally unassembled form. Each processor 5b4319ba4SBarry Smith assembles only its local Neumann problem and the parallel matrix vector 6b4319ba4SBarry Smith product is handled "implicitly". 7b4319ba4SBarry Smith 8b4319ba4SBarry Smith We provide: 9b4319ba4SBarry Smith MatMult() 10b4319ba4SBarry Smith 11b4319ba4SBarry Smith Currently this allows for only one subdomain per processor. 12b4319ba4SBarry Smith 13b4319ba4SBarry Smith */ 14b4319ba4SBarry Smith 15c6db04a5SJed Brown #include <../src/mat/impls/is/matis.h> /*I "petscmat.h" I*/ 16b4319ba4SBarry Smith 17b4319ba4SBarry Smith #undef __FUNCT__ 18b4319ba4SBarry Smith #define __FUNCT__ "MatDestroy_IS" 19dfbe8321SBarry Smith PetscErrorCode MatDestroy_IS(Mat A) 20b4319ba4SBarry Smith { 21dfbe8321SBarry Smith PetscErrorCode ierr; 22b4319ba4SBarry Smith Mat_IS *b = (Mat_IS*)A->data; 23b4319ba4SBarry Smith 24b4319ba4SBarry Smith PetscFunctionBegin; 256bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 266bf464f9SBarry Smith ierr = VecScatterDestroy(&b->ctx);CHKERRQ(ierr); 276bf464f9SBarry Smith ierr = VecDestroy(&b->x);CHKERRQ(ierr); 286bf464f9SBarry Smith ierr = VecDestroy(&b->y);CHKERRQ(ierr); 296bf464f9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(&b->mapping);CHKERRQ(ierr); 30*bf0cc555SLisandro Dalcin ierr = PetscFree(A->data);CHKERRQ(ierr); 31dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 32901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatISGetLocalMat_C","",PETSC_NULL);CHKERRQ(ierr); 33b4319ba4SBarry Smith PetscFunctionReturn(0); 34b4319ba4SBarry Smith } 35b4319ba4SBarry Smith 36b4319ba4SBarry Smith #undef __FUNCT__ 37b4319ba4SBarry Smith #define __FUNCT__ "MatMult_IS" 38dfbe8321SBarry Smith PetscErrorCode MatMult_IS(Mat A,Vec x,Vec y) 39b4319ba4SBarry Smith { 40dfbe8321SBarry Smith PetscErrorCode ierr; 41b4319ba4SBarry Smith Mat_IS *is = (Mat_IS*)A->data; 42b4319ba4SBarry Smith PetscScalar zero = 0.0; 43b4319ba4SBarry Smith 44b4319ba4SBarry Smith PetscFunctionBegin; 45b4319ba4SBarry Smith /* scatter the global vector x into the local work vector */ 46ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 47ca9f406cSSatish Balay ierr = VecScatterEnd(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 48b4319ba4SBarry Smith 49b4319ba4SBarry Smith /* multiply the local matrix */ 50b4319ba4SBarry Smith ierr = MatMult(is->A,is->x,is->y);CHKERRQ(ierr); 51b4319ba4SBarry Smith 52b4319ba4SBarry Smith /* scatter product back into global memory */ 532dcb1b2aSMatthew Knepley ierr = VecSet(y,zero);CHKERRQ(ierr); 54ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 55ca9f406cSSatish Balay ierr = VecScatterEnd(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 56b4319ba4SBarry Smith 57b4319ba4SBarry Smith PetscFunctionReturn(0); 58b4319ba4SBarry Smith } 59b4319ba4SBarry Smith 60b4319ba4SBarry Smith #undef __FUNCT__ 612e74eeadSLisandro Dalcin #define __FUNCT__ "MatMultAdd_IS" 622e74eeadSLisandro Dalcin static PetscErrorCode MatMultAdd_IS(Mat A,Vec v1,Vec v2,Vec v3) 632e74eeadSLisandro Dalcin { 642e74eeadSLisandro Dalcin PetscErrorCode ierr; 652e74eeadSLisandro Dalcin Mat_IS *is = (Mat_IS*)A->data; 662e74eeadSLisandro Dalcin 672e74eeadSLisandro Dalcin PetscFunctionBegin; /* v3 = v2 + A * v1.*/ 682e74eeadSLisandro Dalcin /* scatter the global vector v1 into the local work vector */ 69ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,v1,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 70ca9f406cSSatish Balay ierr = VecScatterEnd (is->ctx,v1,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 71ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,v2,is->y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 72ca9f406cSSatish Balay ierr = VecScatterEnd (is->ctx,v2,is->y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 732e74eeadSLisandro Dalcin 742e74eeadSLisandro Dalcin /* multiply the local matrix */ 752e74eeadSLisandro Dalcin ierr = MatMultAdd(is->A,is->x,is->y,is->y);CHKERRQ(ierr); 762e74eeadSLisandro Dalcin 772e74eeadSLisandro Dalcin /* scatter result back into global vector */ 782e74eeadSLisandro Dalcin ierr = VecSet(v3,0);CHKERRQ(ierr); 79ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,is->y,v3,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 80ca9f406cSSatish Balay ierr = VecScatterEnd (is->ctx,is->y,v3,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 812e74eeadSLisandro Dalcin PetscFunctionReturn(0); 822e74eeadSLisandro Dalcin } 832e74eeadSLisandro Dalcin 842e74eeadSLisandro Dalcin #undef __FUNCT__ 852e74eeadSLisandro Dalcin #define __FUNCT__ "MatMultTranspose_IS" 862e74eeadSLisandro Dalcin PetscErrorCode MatMultTranspose_IS(Mat A,Vec x,Vec y) 872e74eeadSLisandro Dalcin { 882e74eeadSLisandro Dalcin Mat_IS *is = (Mat_IS*)A->data; 892e74eeadSLisandro Dalcin PetscErrorCode ierr; 902e74eeadSLisandro Dalcin 912e74eeadSLisandro Dalcin PetscFunctionBegin; /* y = A' * x */ 922e74eeadSLisandro Dalcin /* scatter the global vector x into the local work vector */ 93ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 94ca9f406cSSatish Balay ierr = VecScatterEnd(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 952e74eeadSLisandro Dalcin 962e74eeadSLisandro Dalcin /* multiply the local matrix */ 972e74eeadSLisandro Dalcin ierr = MatMultTranspose(is->A,is->x,is->y);CHKERRQ(ierr); 982e74eeadSLisandro Dalcin 992e74eeadSLisandro Dalcin /* scatter product back into global vector */ 1002e74eeadSLisandro Dalcin ierr = VecSet(y,0);CHKERRQ(ierr); 101ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 102ca9f406cSSatish Balay ierr = VecScatterEnd(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1032e74eeadSLisandro Dalcin PetscFunctionReturn(0); 1042e74eeadSLisandro Dalcin } 1052e74eeadSLisandro Dalcin 1062e74eeadSLisandro Dalcin #undef __FUNCT__ 1072e74eeadSLisandro Dalcin #define __FUNCT__ "MatMultTransposeAdd_IS" 1082e74eeadSLisandro Dalcin PetscErrorCode MatMultTransposeAdd_IS(Mat A,Vec v1,Vec v2,Vec v3) 1092e74eeadSLisandro Dalcin { 1102e74eeadSLisandro Dalcin Mat_IS *is = (Mat_IS*)A->data; 1112e74eeadSLisandro Dalcin PetscErrorCode ierr; 1122e74eeadSLisandro Dalcin 1132e74eeadSLisandro Dalcin PetscFunctionBegin; /* v3 = v2 + A' * v1.*/ 1142e74eeadSLisandro Dalcin /* scatter the global vectors v1 and v2 into the local work vectors */ 115ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,v1,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 116ca9f406cSSatish Balay ierr = VecScatterEnd (is->ctx,v1,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 117ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,v2,is->y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 118ca9f406cSSatish Balay ierr = VecScatterEnd (is->ctx,v2,is->y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1192e74eeadSLisandro Dalcin 1202e74eeadSLisandro Dalcin /* multiply the local matrix */ 1212e74eeadSLisandro Dalcin ierr = MatMultTransposeAdd(is->A,is->x,is->y,is->y);CHKERRQ(ierr); 1222e74eeadSLisandro Dalcin 1232e74eeadSLisandro Dalcin /* scatter result back into global vector */ 1242e74eeadSLisandro Dalcin ierr = VecSet(v3,0);CHKERRQ(ierr); 125ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,is->y,v3,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 126ca9f406cSSatish Balay ierr = VecScatterEnd (is->ctx,is->y,v3,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1272e74eeadSLisandro Dalcin PetscFunctionReturn(0); 1282e74eeadSLisandro Dalcin } 1292e74eeadSLisandro Dalcin 1302e74eeadSLisandro Dalcin #undef __FUNCT__ 131b4319ba4SBarry Smith #define __FUNCT__ "MatView_IS" 132dfbe8321SBarry Smith PetscErrorCode MatView_IS(Mat A,PetscViewer viewer) 133b4319ba4SBarry Smith { 134b4319ba4SBarry Smith Mat_IS *a = (Mat_IS*)A->data; 135dfbe8321SBarry Smith PetscErrorCode ierr; 136b4319ba4SBarry Smith PetscViewer sviewer; 137b4319ba4SBarry Smith 138b4319ba4SBarry Smith PetscFunctionBegin; 139b4319ba4SBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 140b4319ba4SBarry Smith ierr = MatView(a->A,sviewer);CHKERRQ(ierr); 141b4319ba4SBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 142b4319ba4SBarry Smith PetscFunctionReturn(0); 143b4319ba4SBarry Smith } 144b4319ba4SBarry Smith 145b4319ba4SBarry Smith #undef __FUNCT__ 146b4319ba4SBarry Smith #define __FUNCT__ "MatSetLocalToGlobalMapping_IS" 147784ac674SJed Brown PetscErrorCode MatSetLocalToGlobalMapping_IS(Mat A,ISLocalToGlobalMapping rmapping,ISLocalToGlobalMapping cmapping) 148b4319ba4SBarry Smith { 149dfbe8321SBarry Smith PetscErrorCode ierr; 15013f74950SBarry Smith PetscInt n; 151b4319ba4SBarry Smith Mat_IS *is = (Mat_IS*)A->data; 152b4319ba4SBarry Smith IS from,to; 153b4319ba4SBarry Smith Vec global; 154b4319ba4SBarry Smith 155b4319ba4SBarry Smith PetscFunctionBegin; 156e7e72b3dSBarry Smith if (is->mapping) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Mapping already set for matrix"); 157784ac674SJed Brown PetscCheckSameComm(A,1,rmapping,2); 158784ac674SJed Brown if (rmapping != cmapping) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"MATIS requires the row and column mappings to be identical"); 159784ac674SJed Brown ierr = PetscObjectReference((PetscObject)rmapping);CHKERRQ(ierr); 1606bf464f9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(&is->mapping);CHKERRQ(ierr); 161784ac674SJed Brown is->mapping = rmapping; 162b4319ba4SBarry Smith 163b4319ba4SBarry Smith /* Create the local matrix A */ 164784ac674SJed Brown ierr = ISLocalToGlobalMappingGetSize(rmapping,&n);CHKERRQ(ierr); 165f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&is->A);CHKERRQ(ierr); 166f69a0ea3SMatthew Knepley ierr = MatSetSizes(is->A,n,n,n,n);CHKERRQ(ierr); 1672e74eeadSLisandro Dalcin ierr = MatSetOptionsPrefix(is->A,"is");CHKERRQ(ierr); 168b4319ba4SBarry Smith ierr = MatSetFromOptions(is->A);CHKERRQ(ierr); 169b4319ba4SBarry Smith 170b4319ba4SBarry Smith /* Create the local work vectors */ 171b4319ba4SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,n,&is->x);CHKERRQ(ierr); 172b4319ba4SBarry Smith ierr = VecDuplicate(is->x,&is->y);CHKERRQ(ierr); 173b4319ba4SBarry Smith 174b4319ba4SBarry Smith /* setup the global to local scatter */ 175b4319ba4SBarry Smith ierr = ISCreateStride(PETSC_COMM_SELF,n,0,1,&to);CHKERRQ(ierr); 176784ac674SJed Brown ierr = ISLocalToGlobalMappingApplyIS(rmapping,to,&from);CHKERRQ(ierr); 177d0f46423SBarry Smith ierr = VecCreateMPIWithArray(((PetscObject)A)->comm,A->cmap->n,A->cmap->N,PETSC_NULL,&global);CHKERRQ(ierr); 178b4319ba4SBarry Smith ierr = VecScatterCreate(global,from,is->x,to,&is->ctx);CHKERRQ(ierr); 1796bf464f9SBarry Smith ierr = VecDestroy(&global);CHKERRQ(ierr); 1806bf464f9SBarry Smith ierr = ISDestroy(&to);CHKERRQ(ierr); 1816bf464f9SBarry Smith ierr = ISDestroy(&from);CHKERRQ(ierr); 182b4319ba4SBarry Smith PetscFunctionReturn(0); 183b4319ba4SBarry Smith } 184b4319ba4SBarry Smith 1852e74eeadSLisandro Dalcin #define ISG2LMapApply(mapping,n,in,out) 0;\ 1862e74eeadSLisandro Dalcin if (!(mapping)->globals) {\ 1872e74eeadSLisandro Dalcin PetscErrorCode _ierr = ISGlobalToLocalMappingApply((mapping),IS_GTOLM_MASK,0,0,0,0);CHKERRQ(_ierr);\ 1882e74eeadSLisandro Dalcin }\ 1892e74eeadSLisandro Dalcin {\ 1902e74eeadSLisandro Dalcin PetscInt _i,*_globals = (mapping)->globals,_start = (mapping)->globalstart,_end = (mapping)->globalend;\ 1912e74eeadSLisandro Dalcin for (_i=0; _i<n; _i++) {\ 1922e74eeadSLisandro Dalcin if (in[_i] < 0) out[_i] = in[_i];\ 1932e74eeadSLisandro Dalcin else if (in[_i] < _start) out[_i] = -1;\ 1942e74eeadSLisandro Dalcin else if (in[_i] > _end) out[_i] = -1;\ 1952e74eeadSLisandro Dalcin else out[_i] = _globals[in[_i] - _start];\ 1962e74eeadSLisandro Dalcin }\ 1972e74eeadSLisandro Dalcin } 1982e74eeadSLisandro Dalcin 1992e74eeadSLisandro Dalcin #undef __FUNCT__ 2002e74eeadSLisandro Dalcin #define __FUNCT__ "MatSetValues_IS" 2012e74eeadSLisandro Dalcin PetscErrorCode MatSetValues_IS(Mat mat, PetscInt m,const PetscInt *rows, PetscInt n,const PetscInt *cols, const PetscScalar *values, InsertMode addv) 2022e74eeadSLisandro Dalcin { 2032e74eeadSLisandro Dalcin Mat_IS *is = (Mat_IS*)mat->data; 2042e74eeadSLisandro Dalcin PetscInt rows_l[2048],cols_l[2048]; 2052e74eeadSLisandro Dalcin PetscErrorCode ierr; 2062e74eeadSLisandro Dalcin 2072e74eeadSLisandro Dalcin PetscFunctionBegin; 2082e74eeadSLisandro Dalcin #if defined(PETSC_USE_DEBUG) 2092e74eeadSLisandro Dalcin if (m > 2048 || n > 2048) { 210e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Number of row/column indices must be <= 2048: they are %D %D",m,n); 2112e74eeadSLisandro Dalcin } 2122e74eeadSLisandro Dalcin #endif 2132e74eeadSLisandro Dalcin ierr = ISG2LMapApply(is->mapping,m,rows,rows_l);CHKERRQ(ierr); 2142e74eeadSLisandro Dalcin ierr = ISG2LMapApply(is->mapping,n,cols,cols_l);CHKERRQ(ierr); 2152e74eeadSLisandro Dalcin ierr = MatSetValues(is->A,m,rows_l,n,cols_l,values,addv);CHKERRQ(ierr); 2162e74eeadSLisandro Dalcin PetscFunctionReturn(0); 2172e74eeadSLisandro Dalcin } 2182e74eeadSLisandro Dalcin 2192e74eeadSLisandro Dalcin #undef ISG2LMapSetUp 2202e74eeadSLisandro Dalcin #undef ISG2LMapApply 221b4319ba4SBarry Smith 222b4319ba4SBarry Smith #undef __FUNCT__ 223b4319ba4SBarry Smith #define __FUNCT__ "MatSetValuesLocal_IS" 22413f74950SBarry Smith PetscErrorCode MatSetValuesLocal_IS(Mat A,PetscInt m,const PetscInt *rows, PetscInt n,const PetscInt *cols,const PetscScalar *values,InsertMode addv) 225b4319ba4SBarry Smith { 226dfbe8321SBarry Smith PetscErrorCode ierr; 227b4319ba4SBarry Smith Mat_IS *is = (Mat_IS*)A->data; 228b4319ba4SBarry Smith 229b4319ba4SBarry Smith PetscFunctionBegin; 230b4319ba4SBarry Smith ierr = MatSetValues(is->A,m,rows,n,cols,values,addv);CHKERRQ(ierr); 231b4319ba4SBarry Smith PetscFunctionReturn(0); 232b4319ba4SBarry Smith } 233b4319ba4SBarry Smith 234b4319ba4SBarry Smith #undef __FUNCT__ 2352e74eeadSLisandro Dalcin #define __FUNCT__ "MatZeroRows_IS" 2362b40b63fSBarry Smith PetscErrorCode MatZeroRows_IS(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 2372e74eeadSLisandro Dalcin { 2382e74eeadSLisandro Dalcin Mat_IS *is = (Mat_IS*)A->data; 2392e74eeadSLisandro Dalcin PetscInt n_l=0, *rows_l = PETSC_NULL; 2402e74eeadSLisandro Dalcin PetscErrorCode ierr; 2412e74eeadSLisandro Dalcin 2422e74eeadSLisandro Dalcin PetscFunctionBegin; 24397b48c8fSBarry Smith if (x && b) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support"); 2442e74eeadSLisandro Dalcin if (n) { 2452e74eeadSLisandro Dalcin ierr = PetscMalloc(n*sizeof(PetscInt),&rows_l);CHKERRQ(ierr); 2462e74eeadSLisandro Dalcin ierr = ISGlobalToLocalMappingApply(is->mapping,IS_GTOLM_DROP,n,rows,&n_l,rows_l);CHKERRQ(ierr); 2472e74eeadSLisandro Dalcin } 2482b40b63fSBarry Smith ierr = MatZeroRowsLocal(A,n_l,rows_l,diag,x,b);CHKERRQ(ierr); 249c31cb41cSBarry Smith ierr = PetscFree(rows_l);CHKERRQ(ierr); 2502e74eeadSLisandro Dalcin PetscFunctionReturn(0); 2512e74eeadSLisandro Dalcin } 2522e74eeadSLisandro Dalcin 2532e74eeadSLisandro Dalcin #undef __FUNCT__ 254b4319ba4SBarry Smith #define __FUNCT__ "MatZeroRowsLocal_IS" 2552b40b63fSBarry Smith PetscErrorCode MatZeroRowsLocal_IS(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 256b4319ba4SBarry Smith { 257b4319ba4SBarry Smith Mat_IS *is = (Mat_IS*)A->data; 258dfbe8321SBarry Smith PetscErrorCode ierr; 259f4df32b1SMatthew Knepley PetscInt i; 260b4319ba4SBarry Smith PetscScalar *array; 261b4319ba4SBarry Smith 262b4319ba4SBarry Smith PetscFunctionBegin; 2639c3e2b52SBarry Smith if (x && b) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support"); 264b4319ba4SBarry Smith { 265b4319ba4SBarry Smith /* 266b4319ba4SBarry Smith Set up is->x as a "counting vector". This is in order to MatMult_IS 267b4319ba4SBarry Smith work properly in the interface nodes. 268b4319ba4SBarry Smith */ 269b4319ba4SBarry Smith Vec counter; 270b4319ba4SBarry Smith PetscScalar one=1.0, zero=0.0; 271d0f46423SBarry Smith ierr = VecCreateMPI(((PetscObject)A)->comm,A->cmap->n,A->cmap->N,&counter);CHKERRQ(ierr); 2722dcb1b2aSMatthew Knepley ierr = VecSet(counter,zero);CHKERRQ(ierr); 2732dcb1b2aSMatthew Knepley ierr = VecSet(is->x,one);CHKERRQ(ierr); 274ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,is->x,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 275ca9f406cSSatish Balay ierr = VecScatterEnd (is->ctx,is->x,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 276ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,counter,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 277ca9f406cSSatish Balay ierr = VecScatterEnd (is->ctx,counter,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2786bf464f9SBarry Smith ierr = VecDestroy(&counter);CHKERRQ(ierr); 279b4319ba4SBarry Smith } 280958c9bccSBarry Smith if (!n) { 281b4319ba4SBarry Smith is->pure_neumann = PETSC_TRUE; 282b4319ba4SBarry Smith } else { 283b4319ba4SBarry Smith is->pure_neumann = PETSC_FALSE; 284b4319ba4SBarry Smith ierr = VecGetArray(is->x,&array);CHKERRQ(ierr); 2852b40b63fSBarry Smith ierr = MatZeroRows(is->A,n,rows,diag,0,0);CHKERRQ(ierr); 286b4319ba4SBarry Smith for (i=0; i<n; i++) { 287f4df32b1SMatthew Knepley ierr = MatSetValue(is->A,rows[i],rows[i],diag/(array[rows[i]]),INSERT_VALUES);CHKERRQ(ierr); 288b4319ba4SBarry Smith } 289b4319ba4SBarry Smith ierr = MatAssemblyBegin(is->A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 290b4319ba4SBarry Smith ierr = MatAssemblyEnd (is->A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 291b4319ba4SBarry Smith ierr = VecRestoreArray(is->x,&array);CHKERRQ(ierr); 292b4319ba4SBarry Smith } 293b4319ba4SBarry Smith 294b4319ba4SBarry Smith PetscFunctionReturn(0); 295b4319ba4SBarry Smith } 296b4319ba4SBarry Smith 297b4319ba4SBarry Smith #undef __FUNCT__ 298b4319ba4SBarry Smith #define __FUNCT__ "MatAssemblyBegin_IS" 299dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_IS(Mat A,MatAssemblyType type) 300b4319ba4SBarry Smith { 301b4319ba4SBarry Smith Mat_IS *is = (Mat_IS*)A->data; 302dfbe8321SBarry Smith PetscErrorCode ierr; 303b4319ba4SBarry Smith 304b4319ba4SBarry Smith PetscFunctionBegin; 305b4319ba4SBarry Smith ierr = MatAssemblyBegin(is->A,type);CHKERRQ(ierr); 306b4319ba4SBarry Smith PetscFunctionReturn(0); 307b4319ba4SBarry Smith } 308b4319ba4SBarry Smith 309b4319ba4SBarry Smith #undef __FUNCT__ 310b4319ba4SBarry Smith #define __FUNCT__ "MatAssemblyEnd_IS" 311dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_IS(Mat A,MatAssemblyType type) 312b4319ba4SBarry Smith { 313b4319ba4SBarry Smith Mat_IS *is = (Mat_IS*)A->data; 314dfbe8321SBarry Smith PetscErrorCode ierr; 315b4319ba4SBarry Smith 316b4319ba4SBarry Smith PetscFunctionBegin; 317b4319ba4SBarry Smith ierr = MatAssemblyEnd(is->A,type);CHKERRQ(ierr); 318b4319ba4SBarry Smith PetscFunctionReturn(0); 319b4319ba4SBarry Smith } 320b4319ba4SBarry Smith 321b4319ba4SBarry Smith EXTERN_C_BEGIN 322b4319ba4SBarry Smith #undef __FUNCT__ 323b4319ba4SBarry Smith #define __FUNCT__ "MatISGetLocalMat_IS" 3247087cfbeSBarry Smith PetscErrorCode MatISGetLocalMat_IS(Mat mat,Mat *local) 325b4319ba4SBarry Smith { 326b4319ba4SBarry Smith Mat_IS *is = (Mat_IS *)mat->data; 327b4319ba4SBarry Smith 328b4319ba4SBarry Smith PetscFunctionBegin; 329b4319ba4SBarry Smith *local = is->A; 330b4319ba4SBarry Smith PetscFunctionReturn(0); 331b4319ba4SBarry Smith } 332b4319ba4SBarry Smith EXTERN_C_END 333b4319ba4SBarry Smith 334b4319ba4SBarry Smith #undef __FUNCT__ 335b4319ba4SBarry Smith #define __FUNCT__ "MatISGetLocalMat" 336b4319ba4SBarry Smith /*@ 337b4319ba4SBarry Smith MatISGetLocalMat - Gets the local matrix stored inside a MATIS matrix. 338b4319ba4SBarry Smith 339b4319ba4SBarry Smith Input Parameter: 340b4319ba4SBarry Smith . mat - the matrix 341b4319ba4SBarry Smith 342b4319ba4SBarry Smith Output Parameter: 343b4319ba4SBarry Smith . local - the local matrix usually MATSEQAIJ 344b4319ba4SBarry Smith 345b4319ba4SBarry Smith Level: advanced 346b4319ba4SBarry Smith 347b4319ba4SBarry Smith Notes: 348b4319ba4SBarry Smith This can be called if you have precomputed the nonzero structure of the 349b4319ba4SBarry Smith matrix and want to provide it to the inner matrix object to improve the performance 350b4319ba4SBarry Smith of the MatSetValues() operation. 351b4319ba4SBarry Smith 352b4319ba4SBarry Smith .seealso: MATIS 353b4319ba4SBarry Smith @*/ 3547087cfbeSBarry Smith PetscErrorCode MatISGetLocalMat(Mat mat,Mat *local) 355b4319ba4SBarry Smith { 3564ac538c5SBarry Smith PetscErrorCode ierr; 357b4319ba4SBarry Smith 358b4319ba4SBarry Smith PetscFunctionBegin; 3590700a824SBarry Smith PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 360b4319ba4SBarry Smith PetscValidPointer(local,2); 3614ac538c5SBarry Smith ierr = PetscUseMethod(mat,"MatISGetLocalMat_C",(Mat,Mat *),(mat,local));CHKERRQ(ierr); 362b4319ba4SBarry Smith PetscFunctionReturn(0); 363b4319ba4SBarry Smith } 364b4319ba4SBarry Smith 3656726f965SBarry Smith #undef __FUNCT__ 3666726f965SBarry Smith #define __FUNCT__ "MatZeroEntries_IS" 3676726f965SBarry Smith PetscErrorCode MatZeroEntries_IS(Mat A) 3686726f965SBarry Smith { 3696726f965SBarry Smith Mat_IS *a = (Mat_IS*)A->data; 3706726f965SBarry Smith PetscErrorCode ierr; 3716726f965SBarry Smith 3726726f965SBarry Smith PetscFunctionBegin; 3736726f965SBarry Smith ierr = MatZeroEntries(a->A);CHKERRQ(ierr); 3746726f965SBarry Smith PetscFunctionReturn(0); 3756726f965SBarry Smith } 3766726f965SBarry Smith 3776726f965SBarry Smith #undef __FUNCT__ 3782e74eeadSLisandro Dalcin #define __FUNCT__ "MatScale_IS" 3792e74eeadSLisandro Dalcin PetscErrorCode MatScale_IS(Mat A,PetscScalar a) 3802e74eeadSLisandro Dalcin { 3812e74eeadSLisandro Dalcin Mat_IS *is = (Mat_IS*)A->data; 3822e74eeadSLisandro Dalcin PetscErrorCode ierr; 3832e74eeadSLisandro Dalcin 3842e74eeadSLisandro Dalcin PetscFunctionBegin; 3852e74eeadSLisandro Dalcin ierr = MatScale(is->A,a);CHKERRQ(ierr); 3862e74eeadSLisandro Dalcin PetscFunctionReturn(0); 3872e74eeadSLisandro Dalcin } 3882e74eeadSLisandro Dalcin 3892e74eeadSLisandro Dalcin #undef __FUNCT__ 3902e74eeadSLisandro Dalcin #define __FUNCT__ "MatGetDiagonal_IS" 3912e74eeadSLisandro Dalcin PetscErrorCode MatGetDiagonal_IS(Mat A, Vec v) 3922e74eeadSLisandro Dalcin { 3932e74eeadSLisandro Dalcin Mat_IS *is = (Mat_IS*)A->data; 3942e74eeadSLisandro Dalcin PetscErrorCode ierr; 3952e74eeadSLisandro Dalcin 3962e74eeadSLisandro Dalcin PetscFunctionBegin; 3972e74eeadSLisandro Dalcin /* get diagonal of the local matrix */ 3982e74eeadSLisandro Dalcin ierr = MatGetDiagonal(is->A,is->x);CHKERRQ(ierr); 3992e74eeadSLisandro Dalcin 4002e74eeadSLisandro Dalcin /* scatter diagonal back into global vector */ 4012e74eeadSLisandro Dalcin ierr = VecSet(v,0);CHKERRQ(ierr); 402ca9f406cSSatish Balay ierr = VecScatterBegin(is->ctx,is->x,v,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 403ca9f406cSSatish Balay ierr = VecScatterEnd (is->ctx,is->x,v,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4042e74eeadSLisandro Dalcin PetscFunctionReturn(0); 4052e74eeadSLisandro Dalcin } 4062e74eeadSLisandro Dalcin 4072e74eeadSLisandro Dalcin #undef __FUNCT__ 4086726f965SBarry Smith #define __FUNCT__ "MatSetOption_IS" 409ace3abfcSBarry Smith PetscErrorCode MatSetOption_IS(Mat A,MatOption op,PetscBool flg) 4106726f965SBarry Smith { 4116726f965SBarry Smith Mat_IS *a = (Mat_IS*)A->data; 4126726f965SBarry Smith PetscErrorCode ierr; 4136726f965SBarry Smith 4146726f965SBarry Smith PetscFunctionBegin; 4154e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 4166726f965SBarry Smith PetscFunctionReturn(0); 4176726f965SBarry Smith } 4186726f965SBarry Smith 419284134d9SBarry Smith #undef __FUNCT__ 420284134d9SBarry Smith #define __FUNCT__ "MatCreateIS" 421284134d9SBarry Smith /*@ 422284134d9SBarry Smith MatCreateIS - Creates a "process" unassmembled matrix, it is assembled on each 423284134d9SBarry Smith process but not across processes. 424284134d9SBarry Smith 425284134d9SBarry Smith Input Parameters: 426284134d9SBarry Smith + comm - MPI communicator that will share the matrix 427284134d9SBarry Smith . m,n,M,N - local and/or global sizes of the the left and right vector used in matrix vector products 428284134d9SBarry Smith - map - mapping that defines the global number for each local number 429284134d9SBarry Smith 430284134d9SBarry Smith Output Parameter: 431284134d9SBarry Smith . A - the resulting matrix 432284134d9SBarry Smith 4338e6c10adSSatish Balay Level: advanced 4348e6c10adSSatish Balay 435284134d9SBarry Smith Notes: See MATIS for more details 4368cda6cd7SBarry Smith m and n are NOT related to the size of the map, they are the size of the part of the vector owned 4378cda6cd7SBarry Smith by that process. m + nghosts (or n + nghosts) is the length of map since map maps all local points 4388cda6cd7SBarry Smith plus the ghost points to global indices. 439284134d9SBarry Smith 440284134d9SBarry Smith .seealso: MATIS, MatSetLocalToGlobalMapping() 441284134d9SBarry Smith @*/ 4427087cfbeSBarry Smith PetscErrorCode MatCreateIS(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,ISLocalToGlobalMapping map,Mat *A) 443284134d9SBarry Smith { 444284134d9SBarry Smith PetscErrorCode ierr; 445284134d9SBarry Smith 446284134d9SBarry Smith PetscFunctionBegin; 447284134d9SBarry Smith ierr = MatCreate(comm,A);CHKERRQ(ierr); 448284134d9SBarry Smith ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 449284134d9SBarry Smith ierr = MatSetType(*A,MATIS);CHKERRQ(ierr); 450784ac674SJed Brown ierr = MatSetLocalToGlobalMapping(*A,map,map);CHKERRQ(ierr); 451284134d9SBarry Smith PetscFunctionReturn(0); 452284134d9SBarry Smith } 453284134d9SBarry Smith 454b4319ba4SBarry Smith /*MC 455b4319ba4SBarry Smith MATIS - MATIS = "is" - A matrix type to be used for using the Neumann-Neumann type preconditioners. 456b4319ba4SBarry Smith This stores the matrices in globally unassembled form. Each processor 457b4319ba4SBarry Smith assembles only its local Neumann problem and the parallel matrix vector 458b4319ba4SBarry Smith product is handled "implicitly". 459b4319ba4SBarry Smith 460b4319ba4SBarry Smith Operations Provided: 4616726f965SBarry Smith + MatMult() 4622e74eeadSLisandro Dalcin . MatMultAdd() 4632e74eeadSLisandro Dalcin . MatMultTranspose() 4642e74eeadSLisandro Dalcin . MatMultTransposeAdd() 4656726f965SBarry Smith . MatZeroEntries() 4666726f965SBarry Smith . MatSetOption() 4672e74eeadSLisandro Dalcin . MatZeroRows() 4686726f965SBarry Smith . MatZeroRowsLocal() 4692e74eeadSLisandro Dalcin . MatSetValues() 4706726f965SBarry Smith . MatSetValuesLocal() 4712e74eeadSLisandro Dalcin . MatScale() 4722e74eeadSLisandro Dalcin . MatGetDiagonal() 4736726f965SBarry Smith - MatSetLocalToGlobalMapping() 474b4319ba4SBarry Smith 475b4319ba4SBarry Smith Options Database Keys: 476b4319ba4SBarry Smith . -mat_type is - sets the matrix type to "is" during a call to MatSetFromOptions() 477b4319ba4SBarry Smith 478b4319ba4SBarry Smith Notes: Options prefix for the inner matrix are given by -is_mat_xxx 479b4319ba4SBarry Smith 480b4319ba4SBarry Smith You must call MatSetLocalToGlobalMapping() before using this matrix type. 481b4319ba4SBarry Smith 482b4319ba4SBarry Smith You can do matrix preallocation on the local matrix after you obtain it with 483b4319ba4SBarry Smith MatISGetLocalMat() 484b4319ba4SBarry Smith 485b4319ba4SBarry Smith Level: advanced 486b4319ba4SBarry Smith 487b4319ba4SBarry Smith .seealso: PC, MatISGetLocalMat(), MatSetLocalToGlobalMapping() 488b4319ba4SBarry Smith 489b4319ba4SBarry Smith M*/ 490b4319ba4SBarry Smith 491b4319ba4SBarry Smith EXTERN_C_BEGIN 492b4319ba4SBarry Smith #undef __FUNCT__ 493b4319ba4SBarry Smith #define __FUNCT__ "MatCreate_IS" 4947087cfbeSBarry Smith PetscErrorCode MatCreate_IS(Mat A) 495b4319ba4SBarry Smith { 496dfbe8321SBarry Smith PetscErrorCode ierr; 497b4319ba4SBarry Smith Mat_IS *b; 498b4319ba4SBarry Smith 499b4319ba4SBarry Smith PetscFunctionBegin; 50038f2d2fdSLisandro Dalcin ierr = PetscNewLog(A,Mat_IS,&b);CHKERRQ(ierr); 501b4319ba4SBarry Smith A->data = (void*)b; 502b4319ba4SBarry Smith ierr = PetscMemzero(A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 503b4319ba4SBarry Smith 504b4319ba4SBarry Smith A->ops->mult = MatMult_IS; 5052e74eeadSLisandro Dalcin A->ops->multadd = MatMultAdd_IS; 5062e74eeadSLisandro Dalcin A->ops->multtranspose = MatMultTranspose_IS; 5072e74eeadSLisandro Dalcin A->ops->multtransposeadd = MatMultTransposeAdd_IS; 508b4319ba4SBarry Smith A->ops->destroy = MatDestroy_IS; 509b4319ba4SBarry Smith A->ops->setlocaltoglobalmapping = MatSetLocalToGlobalMapping_IS; 5102e74eeadSLisandro Dalcin A->ops->setvalues = MatSetValues_IS; 511b4319ba4SBarry Smith A->ops->setvalueslocal = MatSetValuesLocal_IS; 5122e74eeadSLisandro Dalcin A->ops->zerorows = MatZeroRows_IS; 513b4319ba4SBarry Smith A->ops->zerorowslocal = MatZeroRowsLocal_IS; 514b4319ba4SBarry Smith A->ops->assemblybegin = MatAssemblyBegin_IS; 515b4319ba4SBarry Smith A->ops->assemblyend = MatAssemblyEnd_IS; 516b4319ba4SBarry Smith A->ops->view = MatView_IS; 5176726f965SBarry Smith A->ops->zeroentries = MatZeroEntries_IS; 5182e74eeadSLisandro Dalcin A->ops->scale = MatScale_IS; 5192e74eeadSLisandro Dalcin A->ops->getdiagonal = MatGetDiagonal_IS; 5206726f965SBarry Smith A->ops->setoption = MatSetOption_IS; 521b4319ba4SBarry Smith 52226283091SBarry Smith ierr = PetscLayoutSetBlockSize(A->rmap,1);CHKERRQ(ierr); 52326283091SBarry Smith ierr = PetscLayoutSetBlockSize(A->cmap,1);CHKERRQ(ierr); 52426283091SBarry Smith ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 52526283091SBarry Smith ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 526b4319ba4SBarry Smith 527b4319ba4SBarry Smith b->A = 0; 528b4319ba4SBarry Smith b->ctx = 0; 529b4319ba4SBarry Smith b->x = 0; 530b4319ba4SBarry Smith b->y = 0; 531b4319ba4SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatISGetLocalMat_C","MatISGetLocalMat_IS",MatISGetLocalMat_IS);CHKERRQ(ierr); 53217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)A,MATIS);CHKERRQ(ierr); 533b4319ba4SBarry Smith 534b4319ba4SBarry Smith PetscFunctionReturn(0); 535b4319ba4SBarry Smith } 536b4319ba4SBarry Smith EXTERN_C_END 537