xref: /petsc/src/mat/impls/is/matis.c (revision f23aa3dd738493dcb3a70a8c0c7f5454aa9150c2)
1be1d678aSKris Buschelman 
2b4319ba4SBarry Smith /*
3b4319ba4SBarry Smith     Creates a matrix class for using the Neumann-Neumann type preconditioners.
4b4319ba4SBarry Smith    This stores the matrices in globally unassembled form. Each processor
5b4319ba4SBarry Smith    assembles only its local Neumann problem and the parallel matrix vector
6b4319ba4SBarry Smith    product is handled "implicitly".
7b4319ba4SBarry Smith 
8b4319ba4SBarry Smith      We provide:
9b4319ba4SBarry Smith          MatMult()
10b4319ba4SBarry Smith 
11b4319ba4SBarry Smith     Currently this allows for only one subdomain per processor.
12b4319ba4SBarry Smith 
13b4319ba4SBarry Smith */
14b4319ba4SBarry Smith 
15c6db04a5SJed Brown #include <../src/mat/impls/is/matis.h>      /*I "petscmat.h" I*/
16b4319ba4SBarry Smith 
17b4319ba4SBarry Smith #undef __FUNCT__
18b4319ba4SBarry Smith #define __FUNCT__ "MatDestroy_IS"
19dfbe8321SBarry Smith PetscErrorCode MatDestroy_IS(Mat A)
20b4319ba4SBarry Smith {
21dfbe8321SBarry Smith   PetscErrorCode ierr;
22b4319ba4SBarry Smith   Mat_IS         *b = (Mat_IS*)A->data;
23b4319ba4SBarry Smith 
24b4319ba4SBarry Smith   PetscFunctionBegin;
256bf464f9SBarry Smith   ierr = MatDestroy(&b->A);CHKERRQ(ierr);
266bf464f9SBarry Smith   ierr = VecScatterDestroy(&b->ctx);CHKERRQ(ierr);
276bf464f9SBarry Smith   ierr = VecDestroy(&b->x);CHKERRQ(ierr);
286bf464f9SBarry Smith   ierr = VecDestroy(&b->y);CHKERRQ(ierr);
296bf464f9SBarry Smith   ierr = ISLocalToGlobalMappingDestroy(&b->mapping);CHKERRQ(ierr);
30bf0cc555SLisandro Dalcin   ierr = PetscFree(A->data);CHKERRQ(ierr);
31dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
32901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatISGetLocalMat_C","",PETSC_NULL);CHKERRQ(ierr);
33b4319ba4SBarry Smith   PetscFunctionReturn(0);
34b4319ba4SBarry Smith }
35b4319ba4SBarry Smith 
36b4319ba4SBarry Smith #undef __FUNCT__
37b4319ba4SBarry Smith #define __FUNCT__ "MatMult_IS"
38dfbe8321SBarry Smith PetscErrorCode MatMult_IS(Mat A,Vec x,Vec y)
39b4319ba4SBarry Smith {
40dfbe8321SBarry Smith   PetscErrorCode ierr;
41b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
42b4319ba4SBarry Smith   PetscScalar    zero = 0.0;
43b4319ba4SBarry Smith 
44b4319ba4SBarry Smith   PetscFunctionBegin;
45b4319ba4SBarry Smith   /*  scatter the global vector x into the local work vector */
46ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
47ca9f406cSSatish Balay   ierr = VecScatterEnd(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
48b4319ba4SBarry Smith 
49b4319ba4SBarry Smith   /* multiply the local matrix */
50b4319ba4SBarry Smith   ierr = MatMult(is->A,is->x,is->y);CHKERRQ(ierr);
51b4319ba4SBarry Smith 
52b4319ba4SBarry Smith   /* scatter product back into global memory */
532dcb1b2aSMatthew Knepley   ierr = VecSet(y,zero);CHKERRQ(ierr);
54ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
55ca9f406cSSatish Balay   ierr = VecScatterEnd(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
56b4319ba4SBarry Smith 
57b4319ba4SBarry Smith   PetscFunctionReturn(0);
58b4319ba4SBarry Smith }
59b4319ba4SBarry Smith 
60b4319ba4SBarry Smith #undef __FUNCT__
612e74eeadSLisandro Dalcin #define __FUNCT__ "MatMultAdd_IS"
622e74eeadSLisandro Dalcin static PetscErrorCode MatMultAdd_IS(Mat A,Vec v1,Vec v2,Vec v3)
632e74eeadSLisandro Dalcin {
64650997f4SStefano Zampini   Vec            temp_vec;
652e74eeadSLisandro Dalcin   PetscErrorCode ierr;
662e74eeadSLisandro Dalcin 
672e74eeadSLisandro Dalcin   PetscFunctionBegin; /*  v3 = v2 + A * v1.*/
68650997f4SStefano Zampini   if (v3 != v2) {
69650997f4SStefano Zampini     ierr = MatMult(A,v1,v3);CHKERRQ(ierr);
70650997f4SStefano Zampini     ierr = VecAXPY(v3,1.0,v2);CHKERRQ(ierr);
71650997f4SStefano Zampini   } else {
72650997f4SStefano Zampini     ierr = VecDuplicate(v2,&temp_vec);CHKERRQ(ierr);
73650997f4SStefano Zampini     ierr = MatMult(A,v1,temp_vec);CHKERRQ(ierr);
74650997f4SStefano Zampini     ierr = VecAXPY(temp_vec,1.0,v2);CHKERRQ(ierr);
75650997f4SStefano Zampini     ierr = VecCopy(temp_vec,v3);CHKERRQ(ierr);
76650997f4SStefano Zampini     ierr = VecDestroy(&temp_vec);CHKERRQ(ierr);
77650997f4SStefano Zampini   }
782e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
792e74eeadSLisandro Dalcin }
802e74eeadSLisandro Dalcin 
812e74eeadSLisandro Dalcin #undef __FUNCT__
822e74eeadSLisandro Dalcin #define __FUNCT__ "MatMultTranspose_IS"
832e74eeadSLisandro Dalcin PetscErrorCode MatMultTranspose_IS(Mat A,Vec x,Vec y)
842e74eeadSLisandro Dalcin {
852e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)A->data;
862e74eeadSLisandro Dalcin   PetscErrorCode ierr;
872e74eeadSLisandro Dalcin 
882e74eeadSLisandro Dalcin   PetscFunctionBegin; /*  y = A' * x */
892e74eeadSLisandro Dalcin   /*  scatter the global vector x into the local work vector */
90ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
91ca9f406cSSatish Balay   ierr = VecScatterEnd(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
922e74eeadSLisandro Dalcin 
932e74eeadSLisandro Dalcin   /* multiply the local matrix */
942e74eeadSLisandro Dalcin   ierr = MatMultTranspose(is->A,is->x,is->y);CHKERRQ(ierr);
952e74eeadSLisandro Dalcin 
962e74eeadSLisandro Dalcin   /* scatter product back into global vector */
972e74eeadSLisandro Dalcin   ierr = VecSet(y,0);CHKERRQ(ierr);
98ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
99ca9f406cSSatish Balay   ierr = VecScatterEnd(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1002e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
1012e74eeadSLisandro Dalcin }
1022e74eeadSLisandro Dalcin 
1032e74eeadSLisandro Dalcin #undef __FUNCT__
1042e74eeadSLisandro Dalcin #define __FUNCT__ "MatMultTransposeAdd_IS"
1052e74eeadSLisandro Dalcin PetscErrorCode MatMultTransposeAdd_IS(Mat A,Vec v1,Vec v2,Vec v3)
1062e74eeadSLisandro Dalcin {
107650997f4SStefano Zampini   Vec            temp_vec;
1082e74eeadSLisandro Dalcin   PetscErrorCode ierr;
1092e74eeadSLisandro Dalcin 
1102e74eeadSLisandro Dalcin   PetscFunctionBegin; /*  v3 = v2 + A' * v1.*/
111650997f4SStefano Zampini   if (v3 != v2) {
112650997f4SStefano Zampini     ierr = MatMultTranspose(A,v1,v3);CHKERRQ(ierr);
113650997f4SStefano Zampini     ierr = VecAXPY(v3,1.0,v2);CHKERRQ(ierr);
114650997f4SStefano Zampini   } else {
115650997f4SStefano Zampini     ierr = VecDuplicate(v2,&temp_vec);CHKERRQ(ierr);
116650997f4SStefano Zampini     ierr = MatMultTranspose(A,v1,temp_vec);CHKERRQ(ierr);
117650997f4SStefano Zampini     ierr = VecAXPY(temp_vec,1.0,v2);CHKERRQ(ierr);
118650997f4SStefano Zampini     ierr = VecCopy(temp_vec,v3);CHKERRQ(ierr);
119650997f4SStefano Zampini     ierr = VecDestroy(&temp_vec);CHKERRQ(ierr);
120650997f4SStefano Zampini   }
1212e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
1222e74eeadSLisandro Dalcin }
1232e74eeadSLisandro Dalcin 
1242e74eeadSLisandro Dalcin #undef __FUNCT__
125b4319ba4SBarry Smith #define __FUNCT__ "MatView_IS"
126dfbe8321SBarry Smith PetscErrorCode MatView_IS(Mat A,PetscViewer viewer)
127b4319ba4SBarry Smith {
128b4319ba4SBarry Smith   Mat_IS         *a = (Mat_IS*)A->data;
129dfbe8321SBarry Smith   PetscErrorCode ierr;
130b4319ba4SBarry Smith   PetscViewer    sviewer;
131b4319ba4SBarry Smith 
132b4319ba4SBarry Smith   PetscFunctionBegin;
133b4319ba4SBarry Smith   ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
134b4319ba4SBarry Smith   ierr = MatView(a->A,sviewer);CHKERRQ(ierr);
135b4319ba4SBarry Smith   ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
136b4319ba4SBarry Smith   PetscFunctionReturn(0);
137b4319ba4SBarry Smith }
138b4319ba4SBarry Smith 
139b4319ba4SBarry Smith #undef __FUNCT__
140b4319ba4SBarry Smith #define __FUNCT__ "MatSetLocalToGlobalMapping_IS"
141784ac674SJed Brown PetscErrorCode MatSetLocalToGlobalMapping_IS(Mat A,ISLocalToGlobalMapping rmapping,ISLocalToGlobalMapping cmapping)
142b4319ba4SBarry Smith {
143dfbe8321SBarry Smith   PetscErrorCode ierr;
1444e4c7dbeSStefano Zampini   PetscInt       n,bs;
145b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
146b4319ba4SBarry Smith   IS             from,to;
147b4319ba4SBarry Smith   Vec            global;
148b4319ba4SBarry Smith 
149b4319ba4SBarry Smith   PetscFunctionBegin;
150e7e72b3dSBarry Smith   if (is->mapping) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Mapping already set for matrix");
151784ac674SJed Brown   PetscCheckSameComm(A,1,rmapping,2);
152784ac674SJed Brown   if (rmapping != cmapping) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"MATIS requires the row and column mappings to be identical");
153784ac674SJed Brown   ierr = PetscObjectReference((PetscObject)rmapping);CHKERRQ(ierr);
1546bf464f9SBarry Smith   ierr = ISLocalToGlobalMappingDestroy(&is->mapping);CHKERRQ(ierr);
155784ac674SJed Brown   is->mapping = rmapping;
156b4319ba4SBarry Smith 
157b4319ba4SBarry Smith   /* Create the local matrix A */
158784ac674SJed Brown   ierr = ISLocalToGlobalMappingGetSize(rmapping,&n);CHKERRQ(ierr);
1594e4c7dbeSStefano Zampini   ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr);
160f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&is->A);CHKERRQ(ierr);
161f69a0ea3SMatthew Knepley   ierr = MatSetSizes(is->A,n,n,n,n);CHKERRQ(ierr);
1624e4c7dbeSStefano Zampini   ierr = MatSetBlockSize(is->A,bs);CHKERRQ(ierr);
163ff130e51SJed Brown   ierr = MatSetOptionsPrefix(is->A,((PetscObject)A)->prefix);CHKERRQ(ierr);
164ff130e51SJed Brown   ierr = MatAppendOptionsPrefix(is->A,"is_");CHKERRQ(ierr);
165b4319ba4SBarry Smith   ierr = MatSetFromOptions(is->A);CHKERRQ(ierr);
166b4319ba4SBarry Smith 
167b4319ba4SBarry Smith   /* Create the local work vectors */
1684e4c7dbeSStefano Zampini   ierr = VecCreate(PETSC_COMM_SELF,&is->x);CHKERRQ(ierr);
1694e4c7dbeSStefano Zampini   ierr = VecSetBlockSize(is->x,bs);CHKERRQ(ierr);
1704e4c7dbeSStefano Zampini   ierr = VecSetSizes(is->x,n,n);CHKERRQ(ierr);
171ff130e51SJed Brown   ierr = VecSetOptionsPrefix(is->x,((PetscObject)A)->prefix);CHKERRQ(ierr);
172ff130e51SJed Brown   ierr = VecAppendOptionsPrefix(is->x,"is_");CHKERRQ(ierr);
1734e4c7dbeSStefano Zampini   ierr = VecSetFromOptions(is->x);CHKERRQ(ierr);
174b4319ba4SBarry Smith   ierr = VecDuplicate(is->x,&is->y);CHKERRQ(ierr);
175b4319ba4SBarry Smith 
176b4319ba4SBarry Smith   /* setup the global to local scatter */
177b4319ba4SBarry Smith   ierr = ISCreateStride(PETSC_COMM_SELF,n,0,1,&to);CHKERRQ(ierr);
178784ac674SJed Brown   ierr = ISLocalToGlobalMappingApplyIS(rmapping,to,&from);CHKERRQ(ierr);
1794e4c7dbeSStefano Zampini   ierr = MatGetVecs(A,&global,PETSC_NULL);CHKERRQ(ierr);
180b4319ba4SBarry Smith   ierr = VecScatterCreate(global,from,is->x,to,&is->ctx);CHKERRQ(ierr);
1816bf464f9SBarry Smith   ierr = VecDestroy(&global);CHKERRQ(ierr);
1826bf464f9SBarry Smith   ierr = ISDestroy(&to);CHKERRQ(ierr);
1836bf464f9SBarry Smith   ierr = ISDestroy(&from);CHKERRQ(ierr);
184b4319ba4SBarry Smith   PetscFunctionReturn(0);
185b4319ba4SBarry Smith }
186b4319ba4SBarry Smith 
1872e74eeadSLisandro Dalcin #define ISG2LMapApply(mapping,n,in,out) 0;\
1882e74eeadSLisandro Dalcin   if (!(mapping)->globals) {\
1892e74eeadSLisandro Dalcin    PetscErrorCode _ierr = ISGlobalToLocalMappingApply((mapping),IS_GTOLM_MASK,0,0,0,0);CHKERRQ(_ierr);\
1902e74eeadSLisandro Dalcin   }\
1912e74eeadSLisandro Dalcin   {\
1922e74eeadSLisandro Dalcin     PetscInt _i,*_globals = (mapping)->globals,_start = (mapping)->globalstart,_end = (mapping)->globalend;\
1932e74eeadSLisandro Dalcin     for (_i=0; _i<n; _i++) {\
1942e74eeadSLisandro Dalcin       if (in[_i] < 0)           out[_i] = in[_i];\
1952e74eeadSLisandro Dalcin       else if (in[_i] < _start) out[_i] = -1;\
1962e74eeadSLisandro Dalcin       else if (in[_i] > _end)   out[_i] = -1;\
1972e74eeadSLisandro Dalcin       else                      out[_i] = _globals[in[_i] - _start];\
1982e74eeadSLisandro Dalcin     }\
1992e74eeadSLisandro Dalcin   }
2002e74eeadSLisandro Dalcin 
2012e74eeadSLisandro Dalcin #undef __FUNCT__
2022e74eeadSLisandro Dalcin #define __FUNCT__ "MatSetValues_IS"
2032e74eeadSLisandro Dalcin PetscErrorCode MatSetValues_IS(Mat mat, PetscInt m,const PetscInt *rows, PetscInt n,const PetscInt *cols, const PetscScalar *values, InsertMode addv)
2042e74eeadSLisandro Dalcin {
2052e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)mat->data;
2062e74eeadSLisandro Dalcin   PetscInt       rows_l[2048],cols_l[2048];
2072e74eeadSLisandro Dalcin   PetscErrorCode ierr;
2082e74eeadSLisandro Dalcin 
2092e74eeadSLisandro Dalcin   PetscFunctionBegin;
2102e74eeadSLisandro Dalcin #if defined(PETSC_USE_DEBUG)
211*f23aa3ddSBarry Smith   if (m > 2048 || n > 2048) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Number of row/column indices must be <= 2048: they are %D %D",m,n);
2122e74eeadSLisandro Dalcin #endif
2132e74eeadSLisandro Dalcin   ierr = ISG2LMapApply(is->mapping,m,rows,rows_l);CHKERRQ(ierr);
2142e74eeadSLisandro Dalcin   ierr = ISG2LMapApply(is->mapping,n,cols,cols_l);CHKERRQ(ierr);
2152e74eeadSLisandro Dalcin   ierr = MatSetValues(is->A,m,rows_l,n,cols_l,values,addv);CHKERRQ(ierr);
2162e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
2172e74eeadSLisandro Dalcin }
2182e74eeadSLisandro Dalcin 
2192e74eeadSLisandro Dalcin #undef ISG2LMapSetUp
2202e74eeadSLisandro Dalcin #undef ISG2LMapApply
221b4319ba4SBarry Smith 
222b4319ba4SBarry Smith #undef __FUNCT__
223b4319ba4SBarry Smith #define __FUNCT__ "MatSetValuesLocal_IS"
22413f74950SBarry Smith PetscErrorCode MatSetValuesLocal_IS(Mat A,PetscInt m,const PetscInt *rows, PetscInt n,const PetscInt *cols,const PetscScalar *values,InsertMode addv)
225b4319ba4SBarry Smith {
226dfbe8321SBarry Smith   PetscErrorCode ierr;
227b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
228b4319ba4SBarry Smith 
229b4319ba4SBarry Smith   PetscFunctionBegin;
230b4319ba4SBarry Smith   ierr = MatSetValues(is->A,m,rows,n,cols,values,addv);CHKERRQ(ierr);
231b4319ba4SBarry Smith   PetscFunctionReturn(0);
232b4319ba4SBarry Smith }
233b4319ba4SBarry Smith 
234b4319ba4SBarry Smith #undef __FUNCT__
2352e74eeadSLisandro Dalcin #define __FUNCT__ "MatZeroRows_IS"
2362b40b63fSBarry Smith PetscErrorCode MatZeroRows_IS(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
2372e74eeadSLisandro Dalcin {
2382e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)A->data;
2392e74eeadSLisandro Dalcin   PetscInt       n_l=0, *rows_l = PETSC_NULL;
2402e74eeadSLisandro Dalcin   PetscErrorCode ierr;
2412e74eeadSLisandro Dalcin 
2422e74eeadSLisandro Dalcin   PetscFunctionBegin;
24397b48c8fSBarry Smith   if (x && b) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support");
2442e74eeadSLisandro Dalcin   if (n) {
2452e74eeadSLisandro Dalcin     ierr = PetscMalloc(n*sizeof(PetscInt),&rows_l);CHKERRQ(ierr);
2462e74eeadSLisandro Dalcin     ierr = ISGlobalToLocalMappingApply(is->mapping,IS_GTOLM_DROP,n,rows,&n_l,rows_l);CHKERRQ(ierr);
2472e74eeadSLisandro Dalcin   }
2482b40b63fSBarry Smith   ierr = MatZeroRowsLocal(A,n_l,rows_l,diag,x,b);CHKERRQ(ierr);
249c31cb41cSBarry Smith   ierr = PetscFree(rows_l);CHKERRQ(ierr);
2502e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
2512e74eeadSLisandro Dalcin }
2522e74eeadSLisandro Dalcin 
2532e74eeadSLisandro Dalcin #undef __FUNCT__
254b4319ba4SBarry Smith #define __FUNCT__ "MatZeroRowsLocal_IS"
2552b40b63fSBarry Smith PetscErrorCode MatZeroRowsLocal_IS(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
256b4319ba4SBarry Smith {
257b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
258dfbe8321SBarry Smith   PetscErrorCode ierr;
259f4df32b1SMatthew Knepley   PetscInt       i;
260b4319ba4SBarry Smith   PetscScalar    *array;
261b4319ba4SBarry Smith 
262b4319ba4SBarry Smith   PetscFunctionBegin;
2639c3e2b52SBarry Smith   if (x && b) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support");
264b4319ba4SBarry Smith   {
265b4319ba4SBarry Smith     /*
266b4319ba4SBarry Smith        Set up is->x as a "counting vector". This is in order to MatMult_IS
267b4319ba4SBarry Smith        work properly in the interface nodes.
268b4319ba4SBarry Smith     */
269b4319ba4SBarry Smith     Vec         counter;
270b4319ba4SBarry Smith     PetscScalar one=1.0, zero=0.0;
2714e4c7dbeSStefano Zampini     ierr = MatGetVecs(A,&counter,PETSC_NULL);CHKERRQ(ierr);
2722dcb1b2aSMatthew Knepley     ierr = VecSet(counter,zero);CHKERRQ(ierr);
2732dcb1b2aSMatthew Knepley     ierr = VecSet(is->x,one);CHKERRQ(ierr);
274ca9f406cSSatish Balay     ierr = VecScatterBegin(is->ctx,is->x,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
275ca9f406cSSatish Balay     ierr = VecScatterEnd  (is->ctx,is->x,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
276ca9f406cSSatish Balay     ierr = VecScatterBegin(is->ctx,counter,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
277ca9f406cSSatish Balay     ierr = VecScatterEnd  (is->ctx,counter,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2786bf464f9SBarry Smith     ierr = VecDestroy(&counter);CHKERRQ(ierr);
279b4319ba4SBarry Smith   }
280958c9bccSBarry Smith   if (!n) {
281b4319ba4SBarry Smith     is->pure_neumann = PETSC_TRUE;
282b4319ba4SBarry Smith   } else {
283b4319ba4SBarry Smith     is->pure_neumann = PETSC_FALSE;
284b4319ba4SBarry Smith     ierr = VecGetArray(is->x,&array);CHKERRQ(ierr);
2852b40b63fSBarry Smith     ierr = MatZeroRows(is->A,n,rows,diag,0,0);CHKERRQ(ierr);
286b4319ba4SBarry Smith     for (i=0; i<n; i++) {
287f4df32b1SMatthew Knepley       ierr = MatSetValue(is->A,rows[i],rows[i],diag/(array[rows[i]]),INSERT_VALUES);CHKERRQ(ierr);
288b4319ba4SBarry Smith     }
289b4319ba4SBarry Smith     ierr = MatAssemblyBegin(is->A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
290b4319ba4SBarry Smith     ierr = MatAssemblyEnd  (is->A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
291b4319ba4SBarry Smith     ierr = VecRestoreArray(is->x,&array);CHKERRQ(ierr);
292b4319ba4SBarry Smith   }
293b4319ba4SBarry Smith 
294b4319ba4SBarry Smith   PetscFunctionReturn(0);
295b4319ba4SBarry Smith }
296b4319ba4SBarry Smith 
297b4319ba4SBarry Smith #undef __FUNCT__
298b4319ba4SBarry Smith #define __FUNCT__ "MatAssemblyBegin_IS"
299dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_IS(Mat A,MatAssemblyType type)
300b4319ba4SBarry Smith {
301b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
302dfbe8321SBarry Smith   PetscErrorCode ierr;
303b4319ba4SBarry Smith 
304b4319ba4SBarry Smith   PetscFunctionBegin;
305b4319ba4SBarry Smith   ierr = MatAssemblyBegin(is->A,type);CHKERRQ(ierr);
306b4319ba4SBarry Smith   PetscFunctionReturn(0);
307b4319ba4SBarry Smith }
308b4319ba4SBarry Smith 
309b4319ba4SBarry Smith #undef __FUNCT__
310b4319ba4SBarry Smith #define __FUNCT__ "MatAssemblyEnd_IS"
311dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_IS(Mat A,MatAssemblyType type)
312b4319ba4SBarry Smith {
313b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
314dfbe8321SBarry Smith   PetscErrorCode ierr;
315b4319ba4SBarry Smith 
316b4319ba4SBarry Smith   PetscFunctionBegin;
317b4319ba4SBarry Smith   ierr = MatAssemblyEnd(is->A,type);CHKERRQ(ierr);
318b4319ba4SBarry Smith   PetscFunctionReturn(0);
319b4319ba4SBarry Smith }
320b4319ba4SBarry Smith 
321b4319ba4SBarry Smith EXTERN_C_BEGIN
322b4319ba4SBarry Smith #undef __FUNCT__
323b4319ba4SBarry Smith #define __FUNCT__ "MatISGetLocalMat_IS"
3247087cfbeSBarry Smith PetscErrorCode  MatISGetLocalMat_IS(Mat mat,Mat *local)
325b4319ba4SBarry Smith {
326b4319ba4SBarry Smith   Mat_IS *is = (Mat_IS *)mat->data;
327b4319ba4SBarry Smith 
328b4319ba4SBarry Smith   PetscFunctionBegin;
329b4319ba4SBarry Smith   *local = is->A;
330b4319ba4SBarry Smith   PetscFunctionReturn(0);
331b4319ba4SBarry Smith }
332b4319ba4SBarry Smith EXTERN_C_END
333b4319ba4SBarry Smith 
334b4319ba4SBarry Smith #undef __FUNCT__
335b4319ba4SBarry Smith #define __FUNCT__ "MatISGetLocalMat"
336b4319ba4SBarry Smith /*@
337b4319ba4SBarry Smith     MatISGetLocalMat - Gets the local matrix stored inside a MATIS matrix.
338b4319ba4SBarry Smith 
339b4319ba4SBarry Smith   Input Parameter:
340b4319ba4SBarry Smith .  mat - the matrix
341b4319ba4SBarry Smith 
342b4319ba4SBarry Smith   Output Parameter:
343b4319ba4SBarry Smith .  local - the local matrix usually MATSEQAIJ
344b4319ba4SBarry Smith 
345b4319ba4SBarry Smith   Level: advanced
346b4319ba4SBarry Smith 
347b4319ba4SBarry Smith   Notes:
348b4319ba4SBarry Smith     This can be called if you have precomputed the nonzero structure of the
349b4319ba4SBarry Smith   matrix and want to provide it to the inner matrix object to improve the performance
350b4319ba4SBarry Smith   of the MatSetValues() operation.
351b4319ba4SBarry Smith 
352b4319ba4SBarry Smith .seealso: MATIS
353b4319ba4SBarry Smith @*/
3547087cfbeSBarry Smith PetscErrorCode  MatISGetLocalMat(Mat mat,Mat *local)
355b4319ba4SBarry Smith {
3564ac538c5SBarry Smith   PetscErrorCode ierr;
357b4319ba4SBarry Smith 
358b4319ba4SBarry Smith   PetscFunctionBegin;
3590700a824SBarry Smith   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
360b4319ba4SBarry Smith   PetscValidPointer(local,2);
3614ac538c5SBarry Smith   ierr = PetscUseMethod(mat,"MatISGetLocalMat_C",(Mat,Mat *),(mat,local));CHKERRQ(ierr);
362b4319ba4SBarry Smith   PetscFunctionReturn(0);
363b4319ba4SBarry Smith }
364b4319ba4SBarry Smith 
3653b03a366Sstefano_zampini EXTERN_C_BEGIN
3663b03a366Sstefano_zampini #undef __FUNCT__
3673b03a366Sstefano_zampini #define __FUNCT__ "MatISSetLocalMat_IS"
3683b03a366Sstefano_zampini PetscErrorCode  MatISSetLocalMat_IS(Mat mat,Mat local)
3693b03a366Sstefano_zampini {
3703b03a366Sstefano_zampini   Mat_IS *is = (Mat_IS *)mat->data;
3713b03a366Sstefano_zampini   PetscInt nrows,ncols,orows,ocols;
3723b03a366Sstefano_zampini   PetscErrorCode ierr;
3733b03a366Sstefano_zampini 
3743b03a366Sstefano_zampini   PetscFunctionBegin;
3754e4c7dbeSStefano Zampini   if (is->A) {
3763b03a366Sstefano_zampini     ierr = MatGetSize(is->A,&orows,&ocols);CHKERRQ(ierr);
3773b03a366Sstefano_zampini     ierr = MatGetSize(local,&nrows,&ncols);CHKERRQ(ierr);
378*f23aa3ddSBarry Smith     if (orows != nrows || ocols != ncols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local MATIS matrix should be of size %dx%d (you passed a %dx%d matrix)\n",orows,ocols,nrows,ncols);
3794e4c7dbeSStefano Zampini   }
3803b03a366Sstefano_zampini   ierr = PetscObjectReference((PetscObject)local);CHKERRQ(ierr);
3813b03a366Sstefano_zampini   ierr = MatDestroy(&is->A);CHKERRQ(ierr);
3823b03a366Sstefano_zampini   is->A = local;
3833b03a366Sstefano_zampini 
3843b03a366Sstefano_zampini   PetscFunctionReturn(0);
3853b03a366Sstefano_zampini }
3863b03a366Sstefano_zampini EXTERN_C_END
3873b03a366Sstefano_zampini 
3883b03a366Sstefano_zampini #undef __FUNCT__
3893b03a366Sstefano_zampini #define __FUNCT__ "MatISSetLocalMat"
3903b03a366Sstefano_zampini /*@
3913b03a366Sstefano_zampini     MatISSetLocalMat - Set the local matrix stored inside a MATIS matrix.
3923b03a366Sstefano_zampini 
3933b03a366Sstefano_zampini   Input Parameter:
3943b03a366Sstefano_zampini .  mat - the matrix
3953b03a366Sstefano_zampini .  local - the local matrix usually MATSEQAIJ
3963b03a366Sstefano_zampini 
3973b03a366Sstefano_zampini   Output Parameter:
3983b03a366Sstefano_zampini 
3993b03a366Sstefano_zampini   Level: advanced
4003b03a366Sstefano_zampini 
4013b03a366Sstefano_zampini   Notes:
4023b03a366Sstefano_zampini     This can be called if you have precomputed the local matrix and
4033b03a366Sstefano_zampini   want to provide it to the matrix object MATIS.
4043b03a366Sstefano_zampini 
4053b03a366Sstefano_zampini .seealso: MATIS
4063b03a366Sstefano_zampini @*/
4073b03a366Sstefano_zampini PetscErrorCode  MatISSetLocalMat(Mat mat,Mat local)
4083b03a366Sstefano_zampini {
4093b03a366Sstefano_zampini   PetscErrorCode ierr;
4103b03a366Sstefano_zampini 
4113b03a366Sstefano_zampini   PetscFunctionBegin;
4123b03a366Sstefano_zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
4133b03a366Sstefano_zampini   ierr = PetscUseMethod(mat,"MatISSetLocalMat_C",(Mat,Mat),(mat,local));CHKERRQ(ierr);
4143b03a366Sstefano_zampini   PetscFunctionReturn(0);
4153b03a366Sstefano_zampini }
4163b03a366Sstefano_zampini 
4176726f965SBarry Smith #undef __FUNCT__
4186726f965SBarry Smith #define __FUNCT__ "MatZeroEntries_IS"
4196726f965SBarry Smith PetscErrorCode MatZeroEntries_IS(Mat A)
4206726f965SBarry Smith {
4216726f965SBarry Smith   Mat_IS         *a = (Mat_IS*)A->data;
4226726f965SBarry Smith   PetscErrorCode ierr;
4236726f965SBarry Smith 
4246726f965SBarry Smith   PetscFunctionBegin;
4256726f965SBarry Smith   ierr = MatZeroEntries(a->A);CHKERRQ(ierr);
4266726f965SBarry Smith   PetscFunctionReturn(0);
4276726f965SBarry Smith }
4286726f965SBarry Smith 
4296726f965SBarry Smith #undef __FUNCT__
4302e74eeadSLisandro Dalcin #define __FUNCT__ "MatScale_IS"
4312e74eeadSLisandro Dalcin PetscErrorCode MatScale_IS(Mat A,PetscScalar a)
4322e74eeadSLisandro Dalcin {
4332e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)A->data;
4342e74eeadSLisandro Dalcin   PetscErrorCode ierr;
4352e74eeadSLisandro Dalcin 
4362e74eeadSLisandro Dalcin   PetscFunctionBegin;
4372e74eeadSLisandro Dalcin   ierr = MatScale(is->A,a);CHKERRQ(ierr);
4382e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
4392e74eeadSLisandro Dalcin }
4402e74eeadSLisandro Dalcin 
4412e74eeadSLisandro Dalcin #undef __FUNCT__
4422e74eeadSLisandro Dalcin #define __FUNCT__ "MatGetDiagonal_IS"
4432e74eeadSLisandro Dalcin PetscErrorCode MatGetDiagonal_IS(Mat A, Vec v)
4442e74eeadSLisandro Dalcin {
4452e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)A->data;
4462e74eeadSLisandro Dalcin   PetscErrorCode ierr;
4472e74eeadSLisandro Dalcin 
4482e74eeadSLisandro Dalcin   PetscFunctionBegin;
4492e74eeadSLisandro Dalcin   /* get diagonal of the local matrix */
4502e74eeadSLisandro Dalcin   ierr = MatGetDiagonal(is->A,is->x);CHKERRQ(ierr);
4512e74eeadSLisandro Dalcin 
4522e74eeadSLisandro Dalcin   /* scatter diagonal back into global vector */
4532e74eeadSLisandro Dalcin   ierr = VecSet(v,0);CHKERRQ(ierr);
454ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,is->x,v,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
455ca9f406cSSatish Balay   ierr = VecScatterEnd  (is->ctx,is->x,v,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4562e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
4572e74eeadSLisandro Dalcin }
4582e74eeadSLisandro Dalcin 
4592e74eeadSLisandro Dalcin #undef __FUNCT__
4606726f965SBarry Smith #define __FUNCT__ "MatSetOption_IS"
461ace3abfcSBarry Smith PetscErrorCode MatSetOption_IS(Mat A,MatOption op,PetscBool  flg)
4626726f965SBarry Smith {
4636726f965SBarry Smith   Mat_IS         *a = (Mat_IS*)A->data;
4646726f965SBarry Smith   PetscErrorCode ierr;
4656726f965SBarry Smith 
4666726f965SBarry Smith   PetscFunctionBegin;
4674e0d8c25SBarry Smith   ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
4686726f965SBarry Smith   PetscFunctionReturn(0);
4696726f965SBarry Smith }
4706726f965SBarry Smith 
471284134d9SBarry Smith #undef __FUNCT__
472284134d9SBarry Smith #define __FUNCT__ "MatCreateIS"
473284134d9SBarry Smith /*@
474284134d9SBarry Smith     MatCreateIS - Creates a "process" unassmembled matrix, it is assembled on each
475284134d9SBarry Smith        process but not across processes.
476284134d9SBarry Smith 
477284134d9SBarry Smith    Input Parameters:
478284134d9SBarry Smith +     comm - MPI communicator that will share the matrix
4794e4c7dbeSStefano Zampini .     bs - local and global block size of the matrix
480284134d9SBarry Smith .     m,n,M,N - local and/or global sizes of the the left and right vector used in matrix vector products
481284134d9SBarry Smith -     map - mapping that defines the global number for each local number
482284134d9SBarry Smith 
483284134d9SBarry Smith    Output Parameter:
484284134d9SBarry Smith .    A - the resulting matrix
485284134d9SBarry Smith 
4868e6c10adSSatish Balay    Level: advanced
4878e6c10adSSatish Balay 
488284134d9SBarry Smith    Notes: See MATIS for more details
4898cda6cd7SBarry Smith           m and n are NOT related to the size of the map, they are the size of the part of the vector owned
4908cda6cd7SBarry Smith           by that process. m + nghosts (or n + nghosts) is the length of map since map maps all local points
4918cda6cd7SBarry Smith           plus the ghost points to global indices.
492284134d9SBarry Smith 
493284134d9SBarry Smith .seealso: MATIS, MatSetLocalToGlobalMapping()
494284134d9SBarry Smith @*/
4954e4c7dbeSStefano Zampini PetscErrorCode  MatCreateIS(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,ISLocalToGlobalMapping map,Mat *A)
496284134d9SBarry Smith {
497284134d9SBarry Smith   PetscErrorCode ierr;
498284134d9SBarry Smith 
499284134d9SBarry Smith   PetscFunctionBegin;
500284134d9SBarry Smith   ierr = MatCreate(comm,A);CHKERRQ(ierr);
501d3ee2243SStefano Zampini   ierr = MatSetBlockSize(*A,bs);CHKERRQ(ierr);
502284134d9SBarry Smith   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
503284134d9SBarry Smith   ierr = MatSetType(*A,MATIS);CHKERRQ(ierr);
5043b03a366Sstefano_zampini   ierr = MatSetUp(*A);CHKERRQ(ierr);
505784ac674SJed Brown   ierr = MatSetLocalToGlobalMapping(*A,map,map);CHKERRQ(ierr);
506284134d9SBarry Smith   PetscFunctionReturn(0);
507284134d9SBarry Smith }
508284134d9SBarry Smith 
509b4319ba4SBarry Smith /*MC
510b4319ba4SBarry Smith    MATIS - MATIS = "is" - A matrix type to be used for using the Neumann-Neumann type preconditioners.
511b4319ba4SBarry Smith    This stores the matrices in globally unassembled form. Each processor
512b4319ba4SBarry Smith    assembles only its local Neumann problem and the parallel matrix vector
513b4319ba4SBarry Smith    product is handled "implicitly".
514b4319ba4SBarry Smith 
515b4319ba4SBarry Smith    Operations Provided:
5166726f965SBarry Smith +  MatMult()
5172e74eeadSLisandro Dalcin .  MatMultAdd()
5182e74eeadSLisandro Dalcin .  MatMultTranspose()
5192e74eeadSLisandro Dalcin .  MatMultTransposeAdd()
5206726f965SBarry Smith .  MatZeroEntries()
5216726f965SBarry Smith .  MatSetOption()
5222e74eeadSLisandro Dalcin .  MatZeroRows()
5236726f965SBarry Smith .  MatZeroRowsLocal()
5242e74eeadSLisandro Dalcin .  MatSetValues()
5256726f965SBarry Smith .  MatSetValuesLocal()
5262e74eeadSLisandro Dalcin .  MatScale()
5272e74eeadSLisandro Dalcin .  MatGetDiagonal()
5286726f965SBarry Smith -  MatSetLocalToGlobalMapping()
529b4319ba4SBarry Smith 
530b4319ba4SBarry Smith    Options Database Keys:
531b4319ba4SBarry Smith . -mat_type is - sets the matrix type to "is" during a call to MatSetFromOptions()
532b4319ba4SBarry Smith 
533b4319ba4SBarry Smith    Notes: Options prefix for the inner matrix are given by -is_mat_xxx
534b4319ba4SBarry Smith 
535b4319ba4SBarry Smith           You must call MatSetLocalToGlobalMapping() before using this matrix type.
536b4319ba4SBarry Smith 
537b4319ba4SBarry Smith           You can do matrix preallocation on the local matrix after you obtain it with
538b4319ba4SBarry Smith           MatISGetLocalMat()
539b4319ba4SBarry Smith 
540b4319ba4SBarry Smith   Level: advanced
541b4319ba4SBarry Smith 
542b4319ba4SBarry Smith .seealso: PC, MatISGetLocalMat(), MatSetLocalToGlobalMapping()
543b4319ba4SBarry Smith 
544b4319ba4SBarry Smith M*/
545b4319ba4SBarry Smith 
546b4319ba4SBarry Smith EXTERN_C_BEGIN
547b4319ba4SBarry Smith #undef __FUNCT__
548b4319ba4SBarry Smith #define __FUNCT__ "MatCreate_IS"
5497087cfbeSBarry Smith PetscErrorCode  MatCreate_IS(Mat A)
550b4319ba4SBarry Smith {
551dfbe8321SBarry Smith   PetscErrorCode ierr;
552b4319ba4SBarry Smith   Mat_IS         *b;
553b4319ba4SBarry Smith 
554b4319ba4SBarry Smith   PetscFunctionBegin;
55538f2d2fdSLisandro Dalcin   ierr                = PetscNewLog(A,Mat_IS,&b);CHKERRQ(ierr);
556b4319ba4SBarry Smith   A->data             = (void*)b;
557b4319ba4SBarry Smith   ierr = PetscMemzero(A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
558b4319ba4SBarry Smith 
559b4319ba4SBarry Smith   A->ops->mult                    = MatMult_IS;
5602e74eeadSLisandro Dalcin   A->ops->multadd                 = MatMultAdd_IS;
5612e74eeadSLisandro Dalcin   A->ops->multtranspose           = MatMultTranspose_IS;
5622e74eeadSLisandro Dalcin   A->ops->multtransposeadd        = MatMultTransposeAdd_IS;
563b4319ba4SBarry Smith   A->ops->destroy                 = MatDestroy_IS;
564b4319ba4SBarry Smith   A->ops->setlocaltoglobalmapping = MatSetLocalToGlobalMapping_IS;
5652e74eeadSLisandro Dalcin   A->ops->setvalues               = MatSetValues_IS;
566b4319ba4SBarry Smith   A->ops->setvalueslocal          = MatSetValuesLocal_IS;
5672e74eeadSLisandro Dalcin   A->ops->zerorows                = MatZeroRows_IS;
568b4319ba4SBarry Smith   A->ops->zerorowslocal           = MatZeroRowsLocal_IS;
569b4319ba4SBarry Smith   A->ops->assemblybegin           = MatAssemblyBegin_IS;
570b4319ba4SBarry Smith   A->ops->assemblyend             = MatAssemblyEnd_IS;
571b4319ba4SBarry Smith   A->ops->view                    = MatView_IS;
5726726f965SBarry Smith   A->ops->zeroentries             = MatZeroEntries_IS;
5732e74eeadSLisandro Dalcin   A->ops->scale                   = MatScale_IS;
5742e74eeadSLisandro Dalcin   A->ops->getdiagonal             = MatGetDiagonal_IS;
5756726f965SBarry Smith   A->ops->setoption               = MatSetOption_IS;
576b4319ba4SBarry Smith 
57726283091SBarry Smith   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
57826283091SBarry Smith   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
579b4319ba4SBarry Smith 
580b4319ba4SBarry Smith   b->A          = 0;
581b4319ba4SBarry Smith   b->ctx        = 0;
582b4319ba4SBarry Smith   b->x          = 0;
583b4319ba4SBarry Smith   b->y          = 0;
584b4319ba4SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatISGetLocalMat_C","MatISGetLocalMat_IS",MatISGetLocalMat_IS);CHKERRQ(ierr);
5853b03a366Sstefano_zampini   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatISSetLocalMat_C","MatISSetLocalMat_IS",MatISSetLocalMat_IS);CHKERRQ(ierr);
58617667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)A,MATIS);CHKERRQ(ierr);
587b4319ba4SBarry Smith 
588b4319ba4SBarry Smith   PetscFunctionReturn(0);
589b4319ba4SBarry Smith }
590b4319ba4SBarry Smith EXTERN_C_END
591