1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*); 12d24d4204SJose E. Roman #endif 13b147fbf3SStefano Zampini 14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 16b147fbf3SStefano Zampini { 17b147fbf3SStefano Zampini Mat preallocator; 18b147fbf3SStefano Zampini PetscInt r,rstart,rend; 19b147fbf3SStefano Zampini PetscInt bs,i,m,n,M,N; 20b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 21b147fbf3SStefano Zampini PetscErrorCode ierr; 22b147fbf3SStefano Zampini 23b147fbf3SStefano Zampini PetscFunctionBegin; 24b147fbf3SStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 25b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B,nm,2); 26b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 27b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i],MAT_CLASSID,3); 28b147fbf3SStefano Zampini ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr); 29b147fbf3SStefano Zampini if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts"); 30b147fbf3SStefano Zampini } 31b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B,fill,5); 32b147fbf3SStefano Zampini ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr); 33b147fbf3SStefano Zampini ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr); 34b147fbf3SStefano Zampini ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr); 35b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr); 36b147fbf3SStefano Zampini ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr); 37b147fbf3SStefano Zampini ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr); 38b147fbf3SStefano Zampini ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr); 39b147fbf3SStefano Zampini ierr = MatSetUp(preallocator);CHKERRQ(ierr); 40b147fbf3SStefano Zampini ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr); 41b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 42b147fbf3SStefano Zampini PetscInt ncols; 43b147fbf3SStefano Zampini const PetscInt *row; 44b147fbf3SStefano Zampini const PetscScalar *vals; 45b147fbf3SStefano Zampini 46b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 47b147fbf3SStefano Zampini ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 48b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 49b147fbf3SStefano Zampini if (symm && symm[i]) { 50b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 51b147fbf3SStefano Zampini } 52b147fbf3SStefano Zampini ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 53b147fbf3SStefano Zampini } 54b147fbf3SStefano Zampini } 55b147fbf3SStefano Zampini ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 56b147fbf3SStefano Zampini ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 57b147fbf3SStefano Zampini ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr); 58b147fbf3SStefano Zampini ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 59b147fbf3SStefano Zampini PetscFunctionReturn(0); 60b147fbf3SStefano Zampini } 61b147fbf3SStefano Zampini 6228d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 63b147fbf3SStefano Zampini { 64b147fbf3SStefano Zampini Mat B; 65b147fbf3SStefano Zampini PetscErrorCode ierr; 66b147fbf3SStefano Zampini PetscInt r; 67b147fbf3SStefano Zampini 68b147fbf3SStefano Zampini PetscFunctionBegin; 69b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 7028d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE,isdense; 71b147fbf3SStefano Zampini PetscInt bs; 72b147fbf3SStefano Zampini 73b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 74b147fbf3SStefano Zampini ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 75b147fbf3SStefano Zampini ierr = MatSetType(B,newtype);CHKERRQ(ierr); 76b147fbf3SStefano Zampini ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr); 77b147fbf3SStefano Zampini ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr); 78b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 79b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 8028d58a37SPierre Jolivet ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 8128d58a37SPierre Jolivet if (!isdense) { 82b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 83b147fbf3SStefano Zampini ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr); 84b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 8528d58a37SPierre Jolivet } else { 8628d58a37SPierre Jolivet ierr = MatSetUp(B);CHKERRQ(ierr); 8728d58a37SPierre Jolivet } 8828d58a37SPierre Jolivet } else { 8928d58a37SPierre Jolivet B = *newmat; 9028d58a37SPierre Jolivet ierr = MatZeroEntries(B);CHKERRQ(ierr); 9128d58a37SPierre Jolivet } 92b147fbf3SStefano Zampini 93b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 94b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 95b147fbf3SStefano Zampini PetscInt ncols; 96b147fbf3SStefano Zampini const PetscInt *row; 97b147fbf3SStefano Zampini const PetscScalar *vals; 98b147fbf3SStefano Zampini 99b147fbf3SStefano Zampini ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 100b147fbf3SStefano Zampini ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 101eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 102eb1ec7c1SStefano Zampini if (A->hermitian) { 103eb1ec7c1SStefano Zampini PetscInt i; 104eb1ec7c1SStefano Zampini for (i = 0; i < ncols; i++) { 105eb1ec7c1SStefano Zampini ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr); 106eb1ec7c1SStefano Zampini } 107eb1ec7c1SStefano Zampini } else { 108b147fbf3SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 109eb1ec7c1SStefano Zampini } 110eb1ec7c1SStefano Zampini #else 111eb1ec7c1SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 112eb1ec7c1SStefano Zampini #endif 113b147fbf3SStefano Zampini ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 114b147fbf3SStefano Zampini } 115b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 116b147fbf3SStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 117b147fbf3SStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 118b147fbf3SStefano Zampini 119b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 120b147fbf3SStefano Zampini ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 121b147fbf3SStefano Zampini } else { 122b147fbf3SStefano Zampini *newmat = B; 123b147fbf3SStefano Zampini } 124b147fbf3SStefano Zampini PetscFunctionReturn(0); 125b147fbf3SStefano Zampini } 126b147fbf3SStefano Zampini 1277087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 128a30f8f8cSSatish Balay { 129f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 130dfbe8321SBarry Smith PetscErrorCode ierr; 131a30f8f8cSSatish Balay 132a30f8f8cSSatish Balay PetscFunctionBegin; 133a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 134a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 135a30f8f8cSSatish Balay PetscFunctionReturn(0); 136a30f8f8cSSatish Balay } 137a30f8f8cSSatish Balay 1387087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 139a30f8f8cSSatish Balay { 140f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 141dfbe8321SBarry Smith PetscErrorCode ierr; 142a30f8f8cSSatish Balay 143a30f8f8cSSatish Balay PetscFunctionBegin; 144a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 145a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 146a30f8f8cSSatish Balay PetscFunctionReturn(0); 147a30f8f8cSSatish Balay } 148a30f8f8cSSatish Balay 149d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 150a30f8f8cSSatish Balay { \ 151a30f8f8cSSatish Balay brow = row/bs; \ 152a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 153a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 154a30f8f8cSSatish Balay bcol = col/bs; \ 155a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 156a30f8f8cSSatish Balay low = 0; high = nrow; \ 157a30f8f8cSSatish Balay while (high-low > 3) { \ 158a30f8f8cSSatish Balay t = (low+high)/2; \ 159a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 160a30f8f8cSSatish Balay else low = t; \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 163a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 164a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 165a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 166a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 167a30f8f8cSSatish Balay else *bap = value; \ 168a30f8f8cSSatish Balay goto a_noinsert; \ 169a30f8f8cSSatish Balay } \ 170a30f8f8cSSatish Balay } \ 171a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 172d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 173fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 174a30f8f8cSSatish Balay N = nrow++ - 1; \ 175a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 176580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 177580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 178580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 179a30f8f8cSSatish Balay rp[_i] = bcol; \ 180a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 181e56f5c9eSBarry Smith A->nonzerostate++;\ 182a30f8f8cSSatish Balay a_noinsert:; \ 183a30f8f8cSSatish Balay ailen[brow] = nrow; \ 184a30f8f8cSSatish Balay } 185e5e170daSBarry Smith 186d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 187a30f8f8cSSatish Balay { \ 188a30f8f8cSSatish Balay brow = row/bs; \ 189a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 190a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 191a30f8f8cSSatish Balay bcol = col/bs; \ 192a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 193a30f8f8cSSatish Balay low = 0; high = nrow; \ 194a30f8f8cSSatish Balay while (high-low > 3) { \ 195a30f8f8cSSatish Balay t = (low+high)/2; \ 196a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 197a30f8f8cSSatish Balay else low = t; \ 198a30f8f8cSSatish Balay } \ 199a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 200a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 201a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 202a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 203a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 204a30f8f8cSSatish Balay else *bap = value; \ 205a30f8f8cSSatish Balay goto b_noinsert; \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay } \ 208a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 209d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 210fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 211a30f8f8cSSatish Balay N = nrow++ - 1; \ 212a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 213580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 214580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 215580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay rp[_i] = bcol; \ 217a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 218e56f5c9eSBarry Smith B->nonzerostate++;\ 219a30f8f8cSSatish Balay b_noinsert:; \ 220a30f8f8cSSatish Balay bilen[brow] = nrow; \ 221a30f8f8cSSatish Balay } 222a30f8f8cSSatish Balay 223a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 224476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 225a30f8f8cSSatish Balay */ 226dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 227a30f8f8cSSatish Balay { 228a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 229a30f8f8cSSatish Balay MatScalar value; 230ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 231dfbe8321SBarry Smith PetscErrorCode ierr; 2321302d50aSBarry Smith PetscInt i,j,row,col; 233d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 234d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 235d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 236a30f8f8cSSatish Balay 237a30f8f8cSSatish Balay /* Some Variables required in the macro */ 238a30f8f8cSSatish Balay Mat A = baij->A; 239a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2401302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 241a30f8f8cSSatish Balay MatScalar *aa =a->a; 242a30f8f8cSSatish Balay 243a30f8f8cSSatish Balay Mat B = baij->B; 244a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2451302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 246a30f8f8cSSatish Balay MatScalar *ba =b->a; 247a30f8f8cSSatish Balay 2481302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2491302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 250a30f8f8cSSatish Balay MatScalar *ap,*bap; 251a30f8f8cSSatish Balay 252a30f8f8cSSatish Balay /* for stash */ 2530298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2540298fd71SBarry Smith MatScalar *v_loc = NULL; 255a30f8f8cSSatish Balay 256a30f8f8cSSatish Balay PetscFunctionBegin; 257a30f8f8cSSatish Balay if (!baij->donotstash) { 25859ffdab8SBarry Smith if (n > baij->n_loc) { 25959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 26059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 261785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 262785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 26326fbe8dcSKarl Rupp 26459ffdab8SBarry Smith baij->n_loc = n; 26559ffdab8SBarry Smith } 26659ffdab8SBarry Smith in_loc = baij->in_loc; 26759ffdab8SBarry Smith v_loc = baij->v_loc; 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay 270a30f8f8cSSatish Balay for (i=0; i<m; i++) { 271a30f8f8cSSatish Balay if (im[i] < 0) continue; 272c1758adbSBarry Smith if (PetscUnlikely(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 273a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 274a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 275a30f8f8cSSatish Balay for (j=0; j<n; j++) { 27601b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 27701b2bd88SHong Zhang if (a->ignore_ltriangular) { 27801b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 27926fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 28001b2bd88SHong Zhang } 281a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 282a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 283a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 284a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 285db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 286db4deed7SKarl Rupp else value = v[i+j*m]; 287d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 288a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 289a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 290c1758adbSBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 291a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 292a30f8f8cSSatish Balay if (mat->was_assembled) { 293a30f8f8cSSatish Balay if (!baij->colmap) { 294ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 295a30f8f8cSSatish Balay } 296a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 297a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 29871730473SSatish Balay col = col - 1; 299a30f8f8cSSatish Balay #else 30071730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 301a30f8f8cSSatish Balay #endif 302a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 303ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 304a30f8f8cSSatish Balay col = in[j]; 305a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 306a30f8f8cSSatish Balay B = baij->B; 307a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 308a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 309a30f8f8cSSatish Balay ba = b->a; 31071730473SSatish Balay } else col += in[j]%bs; 311a30f8f8cSSatish Balay } else col = in[j]; 312db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 313db4deed7SKarl Rupp else value = v[i+j*m]; 314d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 315a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay } else { /* off processor entry */ 3194cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 320a30f8f8cSSatish Balay if (!baij->donotstash) { 3215080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 322a30f8f8cSSatish Balay n_loc = 0; 323a30f8f8cSSatish Balay for (j=0; j<n; j++) { 324f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 325a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 326a30f8f8cSSatish Balay if (roworiented) { 327a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 328a30f8f8cSSatish Balay } else { 329a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 330a30f8f8cSSatish Balay } 331a30f8f8cSSatish Balay n_loc++; 332a30f8f8cSSatish Balay } 333b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 334a30f8f8cSSatish Balay } 335a30f8f8cSSatish Balay } 336a30f8f8cSSatish Balay } 337a30f8f8cSSatish Balay PetscFunctionReturn(0); 338a30f8f8cSSatish Balay } 339a30f8f8cSSatish Balay 34036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34136bd2089SBarry Smith { 34236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 34336bd2089SBarry Smith PetscErrorCode ierr; 34436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 34636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 34836bd2089SBarry Smith const PetscScalar *value = v; 34936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35036bd2089SBarry Smith 35136bd2089SBarry Smith PetscFunctionBegin; 35236bd2089SBarry Smith if (col < row) { 35336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 35436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 35536bd2089SBarry Smith } 35636bd2089SBarry Smith rp = aj + ai[row]; 35736bd2089SBarry Smith ap = aa + bs2*ai[row]; 35836bd2089SBarry Smith rmax = imax[row]; 35936bd2089SBarry Smith nrow = ailen[row]; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith low = 0; 36236bd2089SBarry Smith high = nrow; 36336bd2089SBarry Smith 36436bd2089SBarry Smith while (high-low > 7) { 36536bd2089SBarry Smith t = (low+high)/2; 36636bd2089SBarry Smith if (rp[t] > col) high = t; 36736bd2089SBarry Smith else low = t; 36836bd2089SBarry Smith } 36936bd2089SBarry Smith for (i=low; i<high; i++) { 37036bd2089SBarry Smith if (rp[i] > col) break; 37136bd2089SBarry Smith if (rp[i] == col) { 37236bd2089SBarry Smith bap = ap + bs2*i; 37336bd2089SBarry Smith if (roworiented) { 37436bd2089SBarry Smith if (is == ADD_VALUES) { 37536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37736bd2089SBarry Smith bap[jj] += *value++; 37836bd2089SBarry Smith } 37936bd2089SBarry Smith } 38036bd2089SBarry Smith } else { 38136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 38236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38336bd2089SBarry Smith bap[jj] = *value++; 38436bd2089SBarry Smith } 38536bd2089SBarry Smith } 38636bd2089SBarry Smith } 38736bd2089SBarry Smith } else { 38836bd2089SBarry Smith if (is == ADD_VALUES) { 38936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39136bd2089SBarry Smith *bap++ += *value++; 39236bd2089SBarry Smith } 39336bd2089SBarry Smith } 39436bd2089SBarry Smith } else { 39536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39736bd2089SBarry Smith *bap++ = *value++; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith } 40236bd2089SBarry Smith goto noinsert2; 40336bd2089SBarry Smith } 40436bd2089SBarry Smith } 40536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 40736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40836bd2089SBarry Smith N = nrow++ - 1; high++; 40936bd2089SBarry Smith /* shift up all the later entries in this row */ 410580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 411580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 41236bd2089SBarry Smith rp[i] = col; 41336bd2089SBarry Smith bap = ap + bs2*i; 41436bd2089SBarry Smith if (roworiented) { 41536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 41736bd2089SBarry Smith bap[jj] = *value++; 41836bd2089SBarry Smith } 41936bd2089SBarry Smith } 42036bd2089SBarry Smith } else { 42136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42236bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42336bd2089SBarry Smith *bap++ = *value++; 42436bd2089SBarry Smith } 42536bd2089SBarry Smith } 42636bd2089SBarry Smith } 42736bd2089SBarry Smith noinsert2:; 42836bd2089SBarry Smith ailen[row] = nrow; 42936bd2089SBarry Smith PetscFunctionReturn(0); 43036bd2089SBarry Smith } 43136bd2089SBarry Smith 43236bd2089SBarry Smith /* 43336bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 43436bd2089SBarry Smith */ 43536bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 43636bd2089SBarry Smith { 43736bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 43836bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 43936bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 44036bd2089SBarry Smith PetscErrorCode ierr; 44136bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 44236bd2089SBarry Smith PetscBool roworiented=a->roworiented; 44336bd2089SBarry Smith const PetscScalar *value = v; 44436bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 44536bd2089SBarry Smith 44636bd2089SBarry Smith PetscFunctionBegin; 44736bd2089SBarry Smith rp = aj + ai[row]; 44836bd2089SBarry Smith ap = aa + bs2*ai[row]; 44936bd2089SBarry Smith rmax = imax[row]; 45036bd2089SBarry Smith nrow = ailen[row]; 45136bd2089SBarry Smith low = 0; 45236bd2089SBarry Smith high = nrow; 45336bd2089SBarry Smith value = v; 45436bd2089SBarry Smith while (high-low > 7) { 45536bd2089SBarry Smith t = (low+high)/2; 45636bd2089SBarry Smith if (rp[t] > col) high = t; 45736bd2089SBarry Smith else low = t; 45836bd2089SBarry Smith } 45936bd2089SBarry Smith for (i=low; i<high; i++) { 46036bd2089SBarry Smith if (rp[i] > col) break; 46136bd2089SBarry Smith if (rp[i] == col) { 46236bd2089SBarry Smith bap = ap + bs2*i; 46336bd2089SBarry Smith if (roworiented) { 46436bd2089SBarry Smith if (is == ADD_VALUES) { 46536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46736bd2089SBarry Smith bap[jj] += *value++; 46836bd2089SBarry Smith } 46936bd2089SBarry Smith } 47036bd2089SBarry Smith } else { 47136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 47236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 47336bd2089SBarry Smith bap[jj] = *value++; 47436bd2089SBarry Smith } 47536bd2089SBarry Smith } 47636bd2089SBarry Smith } 47736bd2089SBarry Smith } else { 47836bd2089SBarry Smith if (is == ADD_VALUES) { 47936bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48136bd2089SBarry Smith bap[jj] += value[jj]; 48236bd2089SBarry Smith } 48336bd2089SBarry Smith bap += bs; 48436bd2089SBarry Smith } 48536bd2089SBarry Smith } else { 48636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48836bd2089SBarry Smith bap[jj] = value[jj]; 48936bd2089SBarry Smith } 49036bd2089SBarry Smith bap += bs; 49136bd2089SBarry Smith } 49236bd2089SBarry Smith } 49336bd2089SBarry Smith } 49436bd2089SBarry Smith goto noinsert2; 49536bd2089SBarry Smith } 49636bd2089SBarry Smith } 49736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 49836bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 49936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 50036bd2089SBarry Smith N = nrow++ - 1; high++; 50136bd2089SBarry Smith /* shift up all the later entries in this row */ 502580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 503580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 50436bd2089SBarry Smith rp[i] = col; 50536bd2089SBarry Smith bap = ap + bs2*i; 50636bd2089SBarry Smith if (roworiented) { 50736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50836bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 50936bd2089SBarry Smith bap[jj] = *value++; 51036bd2089SBarry Smith } 51136bd2089SBarry Smith } 51236bd2089SBarry Smith } else { 51336bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 51436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 51536bd2089SBarry Smith *bap++ = *value++; 51636bd2089SBarry Smith } 51736bd2089SBarry Smith } 51836bd2089SBarry Smith } 51936bd2089SBarry Smith noinsert2:; 52036bd2089SBarry Smith ailen[row] = nrow; 52136bd2089SBarry Smith PetscFunctionReturn(0); 52236bd2089SBarry Smith } 52336bd2089SBarry Smith 52436bd2089SBarry Smith /* 52536bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 52636bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 52736bd2089SBarry Smith */ 528dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 529a30f8f8cSSatish Balay { 5300880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 531f15d580aSBarry Smith const MatScalar *value; 532f15d580aSBarry Smith MatScalar *barray =baij->barray; 533ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 534dfbe8321SBarry Smith PetscErrorCode ierr; 535899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 536476417e5SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 537476417e5SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 5380880e062SHong Zhang 539a30f8f8cSSatish Balay PetscFunctionBegin; 5400880e062SHong Zhang if (!barray) { 541785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 5420880e062SHong Zhang baij->barray = barray; 5430880e062SHong Zhang } 5440880e062SHong Zhang 5450880e062SHong Zhang if (roworiented) { 5460880e062SHong Zhang stepval = (n-1)*bs; 5470880e062SHong Zhang } else { 5480880e062SHong Zhang stepval = (m-1)*bs; 5490880e062SHong Zhang } 5500880e062SHong Zhang for (i=0; i<m; i++) { 5510880e062SHong Zhang if (im[i] < 0) continue; 552cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 5530880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5540880e062SHong Zhang row = im[i] - rstart; 5550880e062SHong Zhang for (j=0; j<n; j++) { 556f3f98c53SJed Brown if (im[i] > in[j]) { 557f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 558e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 559f3f98c53SJed Brown } 5600880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5610880e062SHong Zhang if ((roworiented) && (n == 1)) { 562f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 5630880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 564f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 5650880e062SHong Zhang } else { /* Here a copy is required */ 5660880e062SHong Zhang if (roworiented) { 5670880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 5680880e062SHong Zhang } else { 5690880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 5700880e062SHong Zhang } 5710880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5720880e062SHong Zhang for (jj=0; jj<bs; jj++) { 5730880e062SHong Zhang *barray++ = *value++; 5740880e062SHong Zhang } 5750880e062SHong Zhang } 5760880e062SHong Zhang barray -=bs2; 5770880e062SHong Zhang } 5780880e062SHong Zhang 5790880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5800880e062SHong Zhang col = in[j] - cstart; 58136bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 58226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 583cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5840880e062SHong Zhang else { 5850880e062SHong Zhang if (mat->was_assembled) { 5860880e062SHong Zhang if (!baij->colmap) { 587ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5880880e062SHong Zhang } 5890880e062SHong Zhang 5902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5910880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5921302d50aSBarry Smith { PetscInt data; 5930880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 594e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5950880e062SHong Zhang } 5960880e062SHong Zhang #else 597e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5980880e062SHong Zhang #endif 5990880e062SHong Zhang #endif 6000880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 6010880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 6020880e062SHong Zhang col = (col - 1)/bs; 6030880e062SHong Zhang #else 6040880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 6050880e062SHong Zhang #endif 6060880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 607ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 6080880e062SHong Zhang col = in[j]; 6090880e062SHong Zhang } 61026fbe8dcSKarl Rupp } else col = in[j]; 61136bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 6120880e062SHong Zhang } 6130880e062SHong Zhang } 6140880e062SHong Zhang } else { 615bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 6160880e062SHong Zhang if (!baij->donotstash) { 6170880e062SHong Zhang if (roworiented) { 6180880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6190880e062SHong Zhang } else { 6200880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6210880e062SHong Zhang } 6220880e062SHong Zhang } 6230880e062SHong Zhang } 6240880e062SHong Zhang } 6250880e062SHong Zhang PetscFunctionReturn(0); 626a30f8f8cSSatish Balay } 627a30f8f8cSSatish Balay 6281302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 629a30f8f8cSSatish Balay { 630f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 6316849ba73SBarry Smith PetscErrorCode ierr; 632d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 633d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 634a30f8f8cSSatish Balay 635a30f8f8cSSatish Balay PetscFunctionBegin; 636a30f8f8cSSatish Balay for (i=0; i<m; i++) { 637e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 638e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 639a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 640a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 641a30f8f8cSSatish Balay for (j=0; j<n; j++) { 642e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 643e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 644a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 645a30f8f8cSSatish Balay col = idxn[j] - bscstart; 646c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 647a30f8f8cSSatish Balay } else { 648a30f8f8cSSatish Balay if (!baij->colmap) { 649ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 652a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 653a30f8f8cSSatish Balay data--; 654a30f8f8cSSatish Balay #else 655a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 656a30f8f8cSSatish Balay #endif 657a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 658a30f8f8cSSatish Balay else { 659a30f8f8cSSatish Balay col = data + idxn[j]%bs; 660e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 661a30f8f8cSSatish Balay } 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay } 664f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 665a30f8f8cSSatish Balay } 666a30f8f8cSSatish Balay PetscFunctionReturn(0); 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay 669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 670a30f8f8cSSatish Balay { 671a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 672dfbe8321SBarry Smith PetscErrorCode ierr; 673a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay PetscFunctionBegin; 676a30f8f8cSSatish Balay if (baij->size == 1) { 677a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 678a30f8f8cSSatish Balay } else { 679a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 680785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 681a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 682a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 683a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 684a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 685b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6868f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 687a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6880b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6890b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6900b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6910b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 692899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 693d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6940b8dc8d2SHong Zhang MatScalar *v; 6950b8dc8d2SHong Zhang 696dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 697580bdb30SBarry Smith ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr); 6980b8dc8d2SHong Zhang /* Amat */ 6990b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 7000b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7010b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7020b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 7030b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7040b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 7050b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7060b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7070b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7080b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7090b8dc8d2SHong Zhang /* non-diagonal block */ 7100b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 7110b8dc8d2SHong Zhang } 7120b8dc8d2SHong Zhang } 7130b8dc8d2SHong Zhang } 71451f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7150b8dc8d2SHong Zhang } 7160b8dc8d2SHong Zhang /* Bmat */ 7170b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 7180b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7190b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7200b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 7210b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7220b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 7230b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7240b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7250b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7260b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7270b8dc8d2SHong Zhang rsum[grow+row] += vabs; 7280b8dc8d2SHong Zhang } 7290b8dc8d2SHong Zhang } 7300b8dc8d2SHong Zhang } 73151f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7320b8dc8d2SHong Zhang } 733b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7340b8dc8d2SHong Zhang *norm = 0.0; 735d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 7360b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7370b8dc8d2SHong Zhang } 73874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 739f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay PetscFunctionReturn(0); 742a30f8f8cSSatish Balay } 743a30f8f8cSSatish Balay 744dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 745a30f8f8cSSatish Balay { 746a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 7481302d50aSBarry Smith PetscInt nstash,reallocs; 749a30f8f8cSSatish Balay 750a30f8f8cSSatish Balay PetscFunctionBegin; 75126fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 752a30f8f8cSSatish Balay 753d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 7541e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7561e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7581e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 759a30f8f8cSSatish Balay PetscFunctionReturn(0); 760a30f8f8cSSatish Balay } 761a30f8f8cSSatish Balay 762dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 763a30f8f8cSSatish Balay { 764a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 765a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 7666849ba73SBarry Smith PetscErrorCode ierr; 76713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 768e44c0bd4SBarry Smith PetscInt *row,*col; 769ace3abfcSBarry Smith PetscBool other_disassembled; 77013f74950SBarry Smith PetscMPIInt n; 771ace3abfcSBarry Smith PetscBool r1,r2,r3; 772a30f8f8cSSatish Balay MatScalar *val; 773a30f8f8cSSatish Balay 77491c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 775a30f8f8cSSatish Balay PetscFunctionBegin; 7764cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 777a30f8f8cSSatish Balay while (1) { 778a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 779a30f8f8cSSatish Balay if (!flg) break; 780a30f8f8cSSatish Balay 781a30f8f8cSSatish Balay for (i=0; i<n;) { 782a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 78326fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 78426fbe8dcSKarl Rupp if (row[j] != rstart) break; 78526fbe8dcSKarl Rupp } 786a30f8f8cSSatish Balay if (j < n) ncols = j-i; 787a30f8f8cSSatish Balay else ncols = n-i; 788a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7894b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 790a30f8f8cSSatish Balay i = j; 791a30f8f8cSSatish Balay } 792a30f8f8cSSatish Balay } 793a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 794a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 795a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 796a30f8f8cSSatish Balay restore the original flags */ 797a30f8f8cSSatish Balay r1 = baij->roworiented; 798a30f8f8cSSatish Balay r2 = a->roworiented; 79991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 80026fbe8dcSKarl Rupp 801a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 802a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 80326fbe8dcSKarl Rupp 80491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 805a30f8f8cSSatish Balay while (1) { 806a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 807a30f8f8cSSatish Balay if (!flg) break; 808a30f8f8cSSatish Balay 809a30f8f8cSSatish Balay for (i=0; i<n;) { 810a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 81126fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 81226fbe8dcSKarl Rupp if (row[j] != rstart) break; 81326fbe8dcSKarl Rupp } 814a30f8f8cSSatish Balay if (j < n) ncols = j-i; 815a30f8f8cSSatish Balay else ncols = n-i; 8164b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 817a30f8f8cSSatish Balay i = j; 818a30f8f8cSSatish Balay } 819a30f8f8cSSatish Balay } 820a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 82126fbe8dcSKarl Rupp 822a30f8f8cSSatish Balay baij->roworiented = r1; 823a30f8f8cSSatish Balay a->roworiented = r2; 82426fbe8dcSKarl Rupp 82591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay 828a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 829a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 832a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 833a30f8f8cSSatish Balay /* 834a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 835a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 836a30f8f8cSSatish Balay */ 837a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 838b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 839a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 840ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 841a30f8f8cSSatish Balay } 842a30f8f8cSSatish Balay } 843a30f8f8cSSatish Balay 844a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 84540781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 846a30f8f8cSSatish Balay } 847a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 848a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 849a30f8f8cSSatish Balay 85074ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 85126fbe8dcSKarl Rupp 852f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8534f9cfa9eSBarry Smith 8544f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8554f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 856e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 857b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 858e56f5c9eSBarry Smith } 859a30f8f8cSSatish Balay PetscFunctionReturn(0); 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay 862dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 8639804daf3SBarry Smith #include <petscdraw.h> 8646849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 865a30f8f8cSSatish Balay { 866a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 867dfbe8321SBarry Smith PetscErrorCode ierr; 868d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8697da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 870ace3abfcSBarry Smith PetscBool iascii,isdraw; 871b0a32e0cSBarry Smith PetscViewer sviewer; 872f3ef73ceSBarry Smith PetscViewerFormat format; 873a30f8f8cSSatish Balay 874a30f8f8cSSatish Balay PetscFunctionBegin; 875251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 876251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 87732077d6dSBarry Smith if (iascii) { 878b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 879456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 880a30f8f8cSSatish Balay MatInfo info; 881ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr); 882a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8831575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 884b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 885a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 886e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 887a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 888e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 889b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8901575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 89107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 892a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 893a30f8f8cSSatish Balay PetscFunctionReturn(0); 894fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 89577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 896a30f8f8cSSatish Balay PetscFunctionReturn(0); 897c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 898c1490034SHong Zhang PetscFunctionReturn(0); 899a30f8f8cSSatish Balay } 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 902a30f8f8cSSatish Balay if (isdraw) { 903b0a32e0cSBarry Smith PetscDraw draw; 904ace3abfcSBarry Smith PetscBool isnull; 905b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 90645f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 90745f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 908a30f8f8cSSatish Balay } 909a30f8f8cSSatish Balay 9107da1fb6eSBarry Smith { 911a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 912a30f8f8cSSatish Balay Mat A; 91365d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 91465d70643SHong Zhang Mat_SeqBAIJ *Bloc; 915d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 916a30f8f8cSSatish Balay MatScalar *a; 9173e219373SBarry Smith const char *matname; 918a30f8f8cSSatish Balay 919f204ca49SKris Buschelman /* Should this be the same type as mat? */ 920ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 921a30f8f8cSSatish Balay if (!rank) { 922f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 923a30f8f8cSSatish Balay } else { 924f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 925a30f8f8cSSatish Balay } 926f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 9270298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 9282b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 9293bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 930a30f8f8cSSatish Balay 931a30f8f8cSSatish Balay /* copy over the A part */ 93265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 933a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 934785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 937e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 93826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 939a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 940e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 941a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 942dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 94326fbe8dcSKarl Rupp col++; 94426fbe8dcSKarl Rupp a += bs; 945a30f8f8cSSatish Balay } 946a30f8f8cSSatish Balay } 947a30f8f8cSSatish Balay } 948a30f8f8cSSatish Balay /* copy over the B part */ 94965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 95065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 951a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 952e9f7bc9eSHong Zhang 953e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 95426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 955a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 956a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 957a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 958799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 95926fbe8dcSKarl Rupp col++; 96026fbe8dcSKarl Rupp a += bs; 961a30f8f8cSSatish Balay } 962a30f8f8cSSatish Balay } 963a30f8f8cSSatish Balay } 964a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 965a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 966a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 967a30f8f8cSSatish Balay /* 968a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 969b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 970a30f8f8cSSatish Balay */ 9713f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 972ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9733e219373SBarry Smith if (!rank) { 974ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 975383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 976a30f8f8cSSatish Balay } 9773f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9781575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9796bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay PetscFunctionReturn(0); 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay 984618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 985618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 986d1654148SHong Zhang 987dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 988a30f8f8cSSatish Balay { 989dfbe8321SBarry Smith PetscErrorCode ierr; 990ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 991a30f8f8cSSatish Balay 992a30f8f8cSSatish Balay PetscFunctionBegin; 993251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 994251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 995251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 996251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 997d1654148SHong Zhang if (iascii || isdraw || issocket) { 998a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 999d1654148SHong Zhang } else if (isbinary) { 1000d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1001a30f8f8cSSatish Balay } 1002a30f8f8cSSatish Balay PetscFunctionReturn(0); 1003a30f8f8cSSatish Balay } 1004a30f8f8cSSatish Balay 1005dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1006a30f8f8cSSatish Balay { 1007a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1008dfbe8321SBarry Smith PetscErrorCode ierr; 1009a30f8f8cSSatish Balay 1010a30f8f8cSSatish Balay PetscFunctionBegin; 1011a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1012d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1013a30f8f8cSSatish Balay #endif 1014a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1015a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 10166bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 10176bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1018a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 10196bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1020a30f8f8cSSatish Balay #else 102105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1022a30f8f8cSSatish Balay #endif 102305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 10246bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 10256bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 10266bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 10276bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 10286bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 10296bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 10306bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 10316bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 10325755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 103305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 103405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 10356bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 10366bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 10376bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1038ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 103905b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1040a30f8f8cSSatish Balay #endif 104159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 104259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1043899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1044bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1045901853e0SKris Buschelman 1046f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr); 1047bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1048bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1049bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1050d2c30c80SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 10516214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 10526214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 10536214f412SHong Zhang #endif 1054d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1055d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL);CHKERRQ(ierr); 1056d24d4204SJose E. Roman #endif 1057b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr); 1058b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr); 1059a30f8f8cSSatish Balay PetscFunctionReturn(0); 1060a30f8f8cSSatish Balay } 1061a30f8f8cSSatish Balay 1062547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1063547795f9SHong Zhang { 1064547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1065547795f9SHong Zhang PetscErrorCode ierr; 1066eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 10676de40e93SBarry Smith PetscScalar *from; 10686de40e93SBarry Smith const PetscScalar *x; 1069547795f9SHong Zhang 1070547795f9SHong Zhang PetscFunctionBegin; 1071547795f9SHong Zhang /* diagonal part */ 1072547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1073547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1074547795f9SHong Zhang 1075547795f9SHong Zhang /* subdiagonal part */ 1076a3234186SStefano Zampini if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name); 1077547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1078547795f9SHong Zhang 1079547795f9SHong Zhang /* copy x into the vec slvec0 */ 1080547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10816de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1082547795f9SHong Zhang 1083580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1084547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 10856de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1086547795f9SHong Zhang 1087547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1088547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1089547795f9SHong Zhang /* supperdiagonal part */ 1090547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1091547795f9SHong Zhang PetscFunctionReturn(0); 1092547795f9SHong Zhang } 1093547795f9SHong Zhang 1094dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1095a9d4b620SHong Zhang { 1096a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1097dfbe8321SBarry Smith PetscErrorCode ierr; 1098eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1099d9ca1df4SBarry Smith PetscScalar *from; 1100d9ca1df4SBarry Smith const PetscScalar *x; 1101a9d4b620SHong Zhang 1102a9d4b620SHong Zhang PetscFunctionBegin; 1103a9d4b620SHong Zhang /* diagonal part */ 1104a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1105fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1106a9d4b620SHong Zhang 1107a9d4b620SHong Zhang /* subdiagonal part */ 1108a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1109fc165ae2SBarry Smith 1110a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11111ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1112d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1113a9d4b620SHong Zhang 1114580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1115fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1116d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1117fc165ae2SBarry Smith 1118fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1119ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1120a9d4b620SHong Zhang /* supperdiagonal part */ 1121a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1122a9d4b620SHong Zhang PetscFunctionReturn(0); 1123a9d4b620SHong Zhang } 1124a9d4b620SHong Zhang 1125eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz) 1126eb1ec7c1SStefano Zampini { 1127eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1128eb1ec7c1SStefano Zampini PetscErrorCode ierr; 1129eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1130eb1ec7c1SStefano Zampini PetscScalar *from,zero=0.0; 1131eb1ec7c1SStefano Zampini const PetscScalar *x; 1132eb1ec7c1SStefano Zampini 1133eb1ec7c1SStefano Zampini PetscFunctionBegin; 1134eb1ec7c1SStefano Zampini /* diagonal part */ 1135eb1ec7c1SStefano Zampini ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1136eb1ec7c1SStefano Zampini ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1137eb1ec7c1SStefano Zampini 1138eb1ec7c1SStefano Zampini /* subdiagonal part */ 1139a3234186SStefano Zampini if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name); 1140eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1141eb1ec7c1SStefano Zampini 1142eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 1143eb1ec7c1SStefano Zampini ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1144eb1ec7c1SStefano Zampini ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1145eb1ec7c1SStefano Zampini ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1146eb1ec7c1SStefano Zampini ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1147eb1ec7c1SStefano Zampini 1148eb1ec7c1SStefano Zampini ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1149eb1ec7c1SStefano Zampini ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1150eb1ec7c1SStefano Zampini ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1151eb1ec7c1SStefano Zampini 1152eb1ec7c1SStefano Zampini /* supperdiagonal part */ 1153eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1154eb1ec7c1SStefano Zampini PetscFunctionReturn(0); 1155eb1ec7c1SStefano Zampini } 1156eb1ec7c1SStefano Zampini 1157dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1158a30f8f8cSSatish Balay { 1159de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1160dfbe8321SBarry Smith PetscErrorCode ierr; 1161d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1162d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1163d9ca1df4SBarry Smith const PetscScalar *x; 1164a9d4b620SHong Zhang 1165a9d4b620SHong Zhang PetscFunctionBegin; 1166a9d4b620SHong Zhang /* diagonal part */ 1167a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11682dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1169a9d4b620SHong Zhang 1170a9d4b620SHong Zhang /* subdiagonal part */ 1171a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1172a9d4b620SHong Zhang 1173a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11741ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1175d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1176580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 11771ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1178a9d4b620SHong Zhang 1179ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1180d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1181ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1182a9d4b620SHong Zhang 1183a9d4b620SHong Zhang /* supperdiagonal part */ 1184a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1185a9d4b620SHong Zhang PetscFunctionReturn(0); 1186a9d4b620SHong Zhang } 1187a9d4b620SHong Zhang 1188a30f8f8cSSatish Balay /* 1189a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1190a30f8f8cSSatish Balay diagonal block 1191a30f8f8cSSatish Balay */ 1192dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1193a30f8f8cSSatish Balay { 1194a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1195dfbe8321SBarry Smith PetscErrorCode ierr; 1196a30f8f8cSSatish Balay 1197a30f8f8cSSatish Balay PetscFunctionBegin; 1198e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1199a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1200a30f8f8cSSatish Balay PetscFunctionReturn(0); 1201a30f8f8cSSatish Balay } 1202a30f8f8cSSatish Balay 1203f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1204a30f8f8cSSatish Balay { 1205a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1206dfbe8321SBarry Smith PetscErrorCode ierr; 1207a30f8f8cSSatish Balay 1208a30f8f8cSSatish Balay PetscFunctionBegin; 1209f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1210f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay PetscFunctionReturn(0); 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay 12141302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1215a30f8f8cSSatish Balay { 1216d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1217d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1218d0d4cfc2SHong Zhang PetscErrorCode ierr; 1219d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1220d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1221899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1222d0d4cfc2SHong Zhang 1223a30f8f8cSSatish Balay PetscFunctionBegin; 1224e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1225d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1226d0d4cfc2SHong Zhang 1227d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1228d0d4cfc2SHong Zhang /* 1229d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1230d0d4cfc2SHong Zhang */ 1231d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1232d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1233d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1234d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1235d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 123626fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1237d0d4cfc2SHong Zhang } 1238dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1239d0d4cfc2SHong Zhang } 1240d0d4cfc2SHong Zhang 1241e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1242d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1243d0d4cfc2SHong Zhang 1244d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1245f4259b30SLisandro Dalcin if (!v) {pvA = NULL; pvB = NULL;} 1246f4259b30SLisandro Dalcin if (!idx) {pcA = NULL; if (!v) pcB = NULL;} 1247d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1248d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1249d0d4cfc2SHong Zhang nztot = nzA + nzB; 1250d0d4cfc2SHong Zhang 1251d0d4cfc2SHong Zhang cmap = mat->garray; 1252d0d4cfc2SHong Zhang if (v || idx) { 1253d0d4cfc2SHong Zhang if (nztot) { 1254d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1255d0d4cfc2SHong Zhang PetscInt imark = -1; 1256d0d4cfc2SHong Zhang if (v) { 1257d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1258d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1259d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1260d0d4cfc2SHong Zhang else break; 1261d0d4cfc2SHong Zhang } 1262d0d4cfc2SHong Zhang imark = i; 1263d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1264d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1265d0d4cfc2SHong Zhang } 1266d0d4cfc2SHong Zhang if (idx) { 1267d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1268d0d4cfc2SHong Zhang if (imark > -1) { 1269d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1270d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1271d0d4cfc2SHong Zhang } 1272d0d4cfc2SHong Zhang } else { 1273d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 127426fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1275d0d4cfc2SHong Zhang else break; 1276d0d4cfc2SHong Zhang } 1277d0d4cfc2SHong Zhang imark = i; 1278d0d4cfc2SHong Zhang } 1279d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1280d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1281d0d4cfc2SHong Zhang } 1282d0d4cfc2SHong Zhang } else { 1283f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1284f4259b30SLisandro Dalcin if (v) *v = NULL; 1285d0d4cfc2SHong Zhang } 1286d0d4cfc2SHong Zhang } 1287d0d4cfc2SHong Zhang *nz = nztot; 1288d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1289d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1290a30f8f8cSSatish Balay PetscFunctionReturn(0); 1291a30f8f8cSSatish Balay } 1292a30f8f8cSSatish Balay 12931302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1294a30f8f8cSSatish Balay { 1295a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1296a30f8f8cSSatish Balay 1297a30f8f8cSSatish Balay PetscFunctionBegin; 1298e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1299a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1300a30f8f8cSSatish Balay PetscFunctionReturn(0); 1301a30f8f8cSSatish Balay } 1302a30f8f8cSSatish Balay 1303d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1304d0d4cfc2SHong Zhang { 1305d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1306d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1307d0d4cfc2SHong Zhang 1308d0d4cfc2SHong Zhang PetscFunctionBegin; 1309d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1310d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1311d0d4cfc2SHong Zhang } 1312d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1313d0d4cfc2SHong Zhang { 1314d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1315d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1316d0d4cfc2SHong Zhang 1317d0d4cfc2SHong Zhang PetscFunctionBegin; 1318d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1319d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1320d0d4cfc2SHong Zhang } 1321d0d4cfc2SHong Zhang 132299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 132399cafbc1SBarry Smith { 132499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 132599cafbc1SBarry Smith PetscErrorCode ierr; 132699cafbc1SBarry Smith 132799cafbc1SBarry Smith PetscFunctionBegin; 132899cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 132999cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 133099cafbc1SBarry Smith PetscFunctionReturn(0); 133199cafbc1SBarry Smith } 133299cafbc1SBarry Smith 133399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 133499cafbc1SBarry Smith { 133599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 133699cafbc1SBarry Smith PetscErrorCode ierr; 133799cafbc1SBarry Smith 133899cafbc1SBarry Smith PetscFunctionBegin; 133999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 134099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 134199cafbc1SBarry Smith PetscFunctionReturn(0); 134299cafbc1SBarry Smith } 134399cafbc1SBarry Smith 13447dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 134536032a97SHong Zhang Input: isrow - distributed(parallel), 134636032a97SHong Zhang iscol_local - locally owned (seq) 134736032a97SHong Zhang */ 134836032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13498f46ffcaSHong Zhang { 13508f46ffcaSHong Zhang PetscErrorCode ierr; 13518f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13528f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 135336032a97SHong Zhang 135436032a97SHong Zhang PetscFunctionBegin; 13558f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13568f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13571098a8e8SHong Zhang if (sz1 > sz2) { 13581098a8e8SHong Zhang *flg = PETSC_FALSE; 13591098a8e8SHong Zhang PetscFunctionReturn(0); 13601098a8e8SHong Zhang } 13618f46ffcaSHong Zhang 13628f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 13638f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13648f46ffcaSHong Zhang 13658f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 13668f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 1367580bdb30SBarry Smith ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr); 1368580bdb30SBarry Smith ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr); 13698f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 13708f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 13718f46ffcaSHong Zhang 13728f46ffcaSHong Zhang nmatch=0; 13738f46ffcaSHong Zhang k = 0; 13748f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 13758f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 13768f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13778f46ffcaSHong Zhang k = j; nmatch++; 13788f46ffcaSHong Zhang break; 13798f46ffcaSHong Zhang } 13808f46ffcaSHong Zhang } 13818f46ffcaSHong Zhang } 13828f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 13838f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13848f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 13858f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 13861098a8e8SHong Zhang if (nmatch < sz1) { 13871098a8e8SHong Zhang *flg = PETSC_FALSE; 13881098a8e8SHong Zhang } else { 13891098a8e8SHong Zhang *flg = PETSC_TRUE; 13901098a8e8SHong Zhang } 139136032a97SHong Zhang PetscFunctionReturn(0); 13928f46ffcaSHong Zhang } 139336032a97SHong Zhang 13947dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 139536032a97SHong Zhang { 139636032a97SHong Zhang PetscErrorCode ierr; 139736032a97SHong Zhang IS iscol_local; 139836032a97SHong Zhang PetscInt csize; 139936032a97SHong Zhang PetscBool isequal; 140036032a97SHong Zhang 140136032a97SHong Zhang PetscFunctionBegin; 140236032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 140336032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 140436032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 140536032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 140636032a97SHong Zhang } else { 1407*068661f9SToby Isaac PetscBool issorted; 1408*068661f9SToby Isaac 140936032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 141036032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 1411*068661f9SToby Isaac ierr = ISSorted(iscol_local, &issorted);CHKERRQ(ierr); 1412*068661f9SToby Isaac if (!isequal || !issorted) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow and be sorted"); 14138f46ffcaSHong Zhang } 14148f46ffcaSHong Zhang 14157dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 14167dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 14178f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 14188f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 14198f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 14208f46ffcaSHong Zhang } 14218f46ffcaSHong Zhang PetscFunctionReturn(0); 14228f46ffcaSHong Zhang } 14238f46ffcaSHong Zhang 1424dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1425a30f8f8cSSatish Balay { 1426a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1427dfbe8321SBarry Smith PetscErrorCode ierr; 1428a30f8f8cSSatish Balay 1429a30f8f8cSSatish Balay PetscFunctionBegin; 1430a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1431a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1432a30f8f8cSSatish Balay PetscFunctionReturn(0); 1433a30f8f8cSSatish Balay } 1434a30f8f8cSSatish Balay 1435dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1436a30f8f8cSSatish Balay { 1437a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1438a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1439dfbe8321SBarry Smith PetscErrorCode ierr; 14403966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 1441a30f8f8cSSatish Balay 1442a30f8f8cSSatish Balay PetscFunctionBegin; 1443d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 144426fbe8dcSKarl Rupp 1445a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 144626fbe8dcSKarl Rupp 1447a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1448a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 144926fbe8dcSKarl Rupp 1450a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 145126fbe8dcSKarl Rupp 1452a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1453a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1454a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1455a30f8f8cSSatish Balay info->nz_used = isend[0]; 1456a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1457a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1458a30f8f8cSSatish Balay info->memory = isend[3]; 1459a30f8f8cSSatish Balay info->mallocs = isend[4]; 1460a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14613966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 146226fbe8dcSKarl Rupp 1463a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1464a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1465a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1466a30f8f8cSSatish Balay info->memory = irecv[3]; 1467a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1468a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14693966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 147026fbe8dcSKarl Rupp 1471a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1472a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1473a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1474a30f8f8cSSatish Balay info->memory = irecv[3]; 1475a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1476f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1477a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1478a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1479a30f8f8cSSatish Balay info->factor_mallocs = 0; 1480a30f8f8cSSatish Balay PetscFunctionReturn(0); 1481a30f8f8cSSatish Balay } 1482a30f8f8cSSatish Balay 1483ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1484a30f8f8cSSatish Balay { 1485a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1486d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1487dfbe8321SBarry Smith PetscErrorCode ierr; 1488a30f8f8cSSatish Balay 1489a30f8f8cSSatish Balay PetscFunctionBegin; 1490e98b92d7SKris Buschelman switch (op) { 1491512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1492e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 149328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1494a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1495c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1496e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 149743674050SBarry Smith MatCheckPreallocated(A,1); 14984e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14994e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1500e98b92d7SKris Buschelman break; 1501e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 150243674050SBarry Smith MatCheckPreallocated(A,1); 15034e0d8c25SBarry Smith a->roworiented = flg; 150426fbe8dcSKarl Rupp 15054e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15064e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1507e98b92d7SKris Buschelman break; 15088c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1509071fcb05SBarry Smith case MAT_SORTED_FULL: 1510290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1511e98b92d7SKris Buschelman break; 1512e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15134e0d8c25SBarry Smith a->donotstash = flg; 1514e98b92d7SKris Buschelman break; 1515e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 15164e0d8c25SBarry Smith a->ht_flag = flg; 1517e98b92d7SKris Buschelman break; 15189a4540c5SBarry Smith case MAT_HERMITIAN: 151943674050SBarry Smith MatCheckPreallocated(A,1); 1520eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15210f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1522eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1523547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1524eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1525eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1526eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1527eb1ec7c1SStefano Zampini A->symmetric = PETSC_FALSE; 1528eb1ec7c1SStefano Zampini } 15290f2140c7SStefano Zampini #endif 1530eeffb40dSHong Zhang break; 1531ffa07934SHong Zhang case MAT_SPD: 153277e54ba9SKris Buschelman case MAT_SYMMETRIC: 153343674050SBarry Smith MatCheckPreallocated(A,1); 1534eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1535eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1536eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1537eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1538eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1539eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1540eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1541eb1ec7c1SStefano Zampini } 1542eb1ec7c1SStefano Zampini #endif 1543eeffb40dSHong Zhang break; 154477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 154543674050SBarry Smith MatCheckPreallocated(A,1); 1546eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1547eeffb40dSHong Zhang break; 15489a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1549e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1550290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 155177e54ba9SKris Buschelman break; 1552d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15534e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1554d0d4cfc2SHong Zhang break; 1555d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15564e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1557d0d4cfc2SHong Zhang break; 1558d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15594e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1560d0d4cfc2SHong Zhang break; 1561e98b92d7SKris Buschelman default: 1562e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1563a30f8f8cSSatish Balay } 1564a30f8f8cSSatish Balay PetscFunctionReturn(0); 1565a30f8f8cSSatish Balay } 1566a30f8f8cSSatish Balay 1567fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1568a30f8f8cSSatish Balay { 1569dfbe8321SBarry Smith PetscErrorCode ierr; 15706e111a19SKarl Rupp 1571a30f8f8cSSatish Balay PetscFunctionBegin; 1572cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1573999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1574cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 1575cf37664fSBarry Smith ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1576fc4dec0aSBarry Smith } 15778115998fSBarry Smith PetscFunctionReturn(0); 1578a30f8f8cSSatish Balay } 1579a30f8f8cSSatish Balay 1580dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1581a30f8f8cSSatish Balay { 1582a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1583a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1584dfbe8321SBarry Smith PetscErrorCode ierr; 15855e90f9d9SHong Zhang PetscInt nv,m,n; 1586ace3abfcSBarry Smith PetscBool flg; 1587a30f8f8cSSatish Balay 1588a30f8f8cSSatish Balay PetscFunctionBegin; 1589a30f8f8cSSatish Balay if (ll != rr) { 1590b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1591e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1592a30f8f8cSSatish Balay } 1593b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1594b3bf805bSHong Zhang 15955e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1596e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1597b3bf805bSHong Zhang 15985e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1599e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 16005e90f9d9SHong Zhang 1601ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16025e90f9d9SHong Zhang 16035e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 16040298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 16055e90f9d9SHong Zhang 16065e90f9d9SHong Zhang /* scale the diagonal part */ 1607a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1608a30f8f8cSSatish Balay 16095e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1610ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16110298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1612a30f8f8cSSatish Balay PetscFunctionReturn(0); 1613a30f8f8cSSatish Balay } 1614a30f8f8cSSatish Balay 1615dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1616a30f8f8cSSatish Balay { 1617f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1618dfbe8321SBarry Smith PetscErrorCode ierr; 1619a30f8f8cSSatish Balay 1620a30f8f8cSSatish Balay PetscFunctionBegin; 1621a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1622a30f8f8cSSatish Balay PetscFunctionReturn(0); 1623a30f8f8cSSatish Balay } 1624a30f8f8cSSatish Balay 16256849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1626a30f8f8cSSatish Balay 1627ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1628a30f8f8cSSatish Balay { 1629a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1630a30f8f8cSSatish Balay Mat a,b,c,d; 1631ace3abfcSBarry Smith PetscBool flg; 1632dfbe8321SBarry Smith PetscErrorCode ierr; 1633a30f8f8cSSatish Balay 1634a30f8f8cSSatish Balay PetscFunctionBegin; 1635a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1636a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1637a30f8f8cSSatish Balay 1638a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1639abc0a331SBarry Smith if (flg) { 1640a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1641a30f8f8cSSatish Balay } 1642b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1643a30f8f8cSSatish Balay PetscFunctionReturn(0); 1644a30f8f8cSSatish Balay } 1645a30f8f8cSSatish Balay 16463c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16473c896bc6SHong Zhang { 16483c896bc6SHong Zhang PetscErrorCode ierr; 16494c7a3774SStefano Zampini PetscBool isbaij; 16503c896bc6SHong Zhang 16513c896bc6SHong Zhang PetscFunctionBegin; 16524c7a3774SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr); 16534c7a3774SStefano Zampini if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 16543c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16553c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1656d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16573c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1658d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16593c896bc6SHong Zhang } else { 16604c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16614c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16624c7a3774SStefano Zampini 16633c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16643c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 16653c896bc6SHong Zhang } 1666cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 16673c896bc6SHong Zhang PetscFunctionReturn(0); 16683c896bc6SHong Zhang } 16693c896bc6SHong Zhang 16704994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1671273d9f13SBarry Smith { 1672dfbe8321SBarry Smith PetscErrorCode ierr; 1673273d9f13SBarry Smith 1674273d9f13SBarry Smith PetscFunctionBegin; 1675f4259b30SLisandro Dalcin ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL);CHKERRQ(ierr); 1676273d9f13SBarry Smith PetscFunctionReturn(0); 1677273d9f13SBarry Smith } 1678a5e6ed63SBarry Smith 16794fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16804fe895cdSHong Zhang { 16814fe895cdSHong Zhang PetscErrorCode ierr; 16824fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16834fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16844fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16854fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16864fe895cdSHong Zhang 16874fe895cdSHong Zhang PetscFunctionBegin; 16884fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16894fe895cdSHong Zhang PetscScalar alpha = a; 16904fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 16914fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1692c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 16938b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 16944fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 16954fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1696c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 16978b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1698a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1699ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1700ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1701ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1702ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 17034fe895cdSHong Zhang } else { 17044de5dceeSHong Zhang Mat B; 17054de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 17064de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1707d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 17084de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 17094de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 17104de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 17114de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 17124de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 17134de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 17144de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 17154de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 17164de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 17174de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 17184de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 17194de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 172028be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 17214de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 17224de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1723d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 17244de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 17254fe895cdSHong Zhang } 17264fe895cdSHong Zhang PetscFunctionReturn(0); 17274fe895cdSHong Zhang } 17284fe895cdSHong Zhang 17297dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1730a5e6ed63SBarry Smith { 17316849ba73SBarry Smith PetscErrorCode ierr; 17321302d50aSBarry Smith PetscInt i; 1733afebec48SHong Zhang PetscBool flg; 1734a5e6ed63SBarry Smith 17356849ba73SBarry Smith PetscFunctionBegin; 17367dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1737a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1738a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1739afebec48SHong Zhang if (!flg) { 1740b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1741a5e6ed63SBarry Smith } 17424dcd73b1SHong Zhang } 1743a5e6ed63SBarry Smith PetscFunctionReturn(0); 1744a5e6ed63SBarry Smith } 1745a5e6ed63SBarry Smith 17467d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17477d68702bSBarry Smith { 17487d68702bSBarry Smith PetscErrorCode ierr; 17497d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17506f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17517d68702bSBarry Smith 17527d68702bSBarry Smith PetscFunctionBegin; 17536f33a894SBarry Smith if (!Y->preallocated) { 17547d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 17556f33a894SBarry Smith } else if (!aij->nz) { 1756b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17576f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1758b83222d8SBarry Smith aij->nonew = nonew; 17597d68702bSBarry Smith } 17607d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 17617d68702bSBarry Smith PetscFunctionReturn(0); 17627d68702bSBarry Smith } 17637d68702bSBarry Smith 17643b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 17653b49f96aSBarry Smith { 17663b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 17673b49f96aSBarry Smith PetscErrorCode ierr; 17683b49f96aSBarry Smith 17693b49f96aSBarry Smith PetscFunctionBegin; 17703b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 17713b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 17723b49f96aSBarry Smith if (d) { 17733b49f96aSBarry Smith PetscInt rstart; 17743b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 17753b49f96aSBarry Smith *d += rstart/A->rmap->bs; 17763b49f96aSBarry Smith 17773b49f96aSBarry Smith } 17783b49f96aSBarry Smith PetscFunctionReturn(0); 17793b49f96aSBarry Smith } 17803b49f96aSBarry Smith 1781a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1782a5b7ff6bSBarry Smith { 1783a5b7ff6bSBarry Smith PetscFunctionBegin; 1784a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1785a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1786a5b7ff6bSBarry Smith } 17873b49f96aSBarry Smith 1788a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17893964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1790a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1791a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1792a9d4b620SHong Zhang MatMult_MPISBAIJ, 179397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1794431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1795431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1796f4259b30SLisandro Dalcin NULL, 1797f4259b30SLisandro Dalcin NULL, 1798f4259b30SLisandro Dalcin NULL, 1799f4259b30SLisandro Dalcin /* 10*/ NULL, 1800f4259b30SLisandro Dalcin NULL, 1801f4259b30SLisandro Dalcin NULL, 180241f059aeSBarry Smith MatSOR_MPISBAIJ, 1803a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 180497304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1805a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1806a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1807a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1808a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 180997304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1810a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1811a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1812a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1813f4259b30SLisandro Dalcin /* 24*/ NULL, 1814f4259b30SLisandro Dalcin NULL, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 18184994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1819f4259b30SLisandro Dalcin NULL, 1820f4259b30SLisandro Dalcin NULL, 1821a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1822f4259b30SLisandro Dalcin NULL, 1823d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1824f4259b30SLisandro Dalcin NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18297dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1830d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1831a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18323c896bc6SHong Zhang MatCopy_MPISBAIJ, 1833f4259b30SLisandro Dalcin /* 44*/ NULL, 1834a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18357d68702bSBarry Smith MatShift_MPISBAIJ, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin /* 49*/ NULL, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin /* 54*/ NULL, 1844f4259b30SLisandro Dalcin NULL, 1845a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1846f4259b30SLisandro Dalcin NULL, 1847a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18487dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1849f4259b30SLisandro Dalcin NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin /* 64*/ NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1859f4259b30SLisandro Dalcin NULL, 186028d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin /* 74*/ NULL, 1864f4259b30SLisandro Dalcin NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin /* 79*/ NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 18725bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1873f4259b30SLisandro Dalcin /* 84*/ NULL, 1874f4259b30SLisandro Dalcin NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin /* 89*/ NULL, 1879f4259b30SLisandro Dalcin NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin /* 94*/ NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin /* 99*/ NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin /*104*/ NULL, 189499cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1895d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1896d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 189795936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1898f4259b30SLisandro Dalcin /*109*/ NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 19023b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1903f4259b30SLisandro Dalcin /*114*/ NULL, 1904f4259b30SLisandro Dalcin NULL, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin NULL, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin /*119*/ NULL, 1909f4259b30SLisandro Dalcin NULL, 1910f4259b30SLisandro Dalcin NULL, 1911f4259b30SLisandro Dalcin NULL, 1912f4259b30SLisandro Dalcin NULL, 1913f4259b30SLisandro Dalcin /*124*/ NULL, 1914f4259b30SLisandro Dalcin NULL, 1915f4259b30SLisandro Dalcin NULL, 1916f4259b30SLisandro Dalcin NULL, 1917f4259b30SLisandro Dalcin NULL, 1918f4259b30SLisandro Dalcin /*129*/ NULL, 1919f4259b30SLisandro Dalcin NULL, 1920f4259b30SLisandro Dalcin NULL, 1921f4259b30SLisandro Dalcin NULL, 1922f4259b30SLisandro Dalcin NULL, 1923f4259b30SLisandro Dalcin /*134*/ NULL, 1924f4259b30SLisandro Dalcin NULL, 1925f4259b30SLisandro Dalcin NULL, 1926f4259b30SLisandro Dalcin NULL, 1927f4259b30SLisandro Dalcin NULL, 192846533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1929f4259b30SLisandro Dalcin NULL, 1930f4259b30SLisandro Dalcin NULL, 1931f4259b30SLisandro Dalcin NULL, 1932f4259b30SLisandro Dalcin NULL, 193359f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 193499cafbc1SBarry Smith }; 1935a30f8f8cSSatish Balay 1936b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1937a23d5eceSKris Buschelman { 1938476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 1939dfbe8321SBarry Smith PetscErrorCode ierr; 1940535b19f3SBarry Smith PetscInt i,mbs,Mbs; 19415d2a9ed1SStefano Zampini PetscMPIInt size; 1942a23d5eceSKris Buschelman 1943a23d5eceSKris Buschelman PetscFunctionBegin; 194433d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 194526283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 194626283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1947e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1948476417e5SBarry Smith if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N); 1949476417e5SBarry Smith if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n); 1950899cda47SBarry Smith 1951d0f46423SBarry Smith mbs = B->rmap->n/bs; 1952d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1953c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1954a23d5eceSKris Buschelman 1955d0f46423SBarry Smith B->rmap->bs = bs; 1956a23d5eceSKris Buschelman b->bs2 = bs*bs; 1957a23d5eceSKris Buschelman b->mbs = mbs; 1958a23d5eceSKris Buschelman b->Mbs = Mbs; 1959de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1960de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1961a23d5eceSKris Buschelman 1962a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1963d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1964a23d5eceSKris Buschelman } 1965d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1966d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1967a23d5eceSKris Buschelman 1968d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1969d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1970a23d5eceSKris Buschelman 1971cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1972cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 1973cb7b82ddSBarry Smith #else 1974cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 1975cb7b82ddSBarry Smith #endif 1976cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 1977cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 1978cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 1979cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 1980cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 1981cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 1982cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 1983cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 1984cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 1985cb7b82ddSBarry Smith 1986cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 1987ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr); 1988cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 1989cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 19905d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 1991cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1992cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1993cb7b82ddSBarry Smith 1994526dfc15SBarry Smith if (!B->preallocated) { 1995f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1996d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 19979c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 19983bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1999ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2000526dfc15SBarry Smith } 2001a23d5eceSKris Buschelman 2002526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2003526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 200426fbe8dcSKarl Rupp 2005526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2006cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2007cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2008a23d5eceSKris Buschelman PetscFunctionReturn(0); 2009a23d5eceSKris Buschelman } 2010a23d5eceSKris Buschelman 2011dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2012dfb205c3SBarry Smith { 201302106b30SBarry Smith PetscInt m,rstart,cend; 2014f4259b30SLisandro Dalcin PetscInt i,j,d,nz,bd, nz_max=0,*d_nnz=NULL,*o_nnz=NULL; 2015f4259b30SLisandro Dalcin const PetscInt *JJ =NULL; 2016f4259b30SLisandro Dalcin PetscScalar *values=NULL; 2017bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented; 2018dfb205c3SBarry Smith PetscErrorCode ierr; 20193bd0feecSPierre Jolivet PetscBool nooffprocentries; 2020dfb205c3SBarry Smith 2021dfb205c3SBarry Smith PetscFunctionBegin; 2022ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2023dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2024dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2025dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2026dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2027e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2028dfb205c3SBarry Smith m = B->rmap->n/bs; 2029dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2030dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2031dfb205c3SBarry Smith 2032dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2033dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2034dfb205c3SBarry Smith for (i=0; i<m; i++) { 2035dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2036dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 20370cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2038dfb205c3SBarry Smith JJ = jj + ii[i]; 20390cd7f59aSBarry Smith bd = 0; 2040dfb205c3SBarry Smith for (j=0; j<nz; j++) { 20410cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2042dfb205c3SBarry Smith JJ++; 20430cd7f59aSBarry Smith bd++; 2044dfb205c3SBarry Smith } 2045dfb205c3SBarry Smith d = 0; 2046dfb205c3SBarry Smith for (; j<nz; j++) { 2047dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2048dfb205c3SBarry Smith d++; 2049dfb205c3SBarry Smith } 2050dfb205c3SBarry Smith d_nnz[i] = d; 20510cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20520cd7f59aSBarry Smith nz = nz - bd; 20530cd7f59aSBarry Smith nz_max = PetscMax(nz_max,nz); 2054dfb205c3SBarry Smith } 2055dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2056bb80cfbbSStefano Zampini ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 2057dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2058dfb205c3SBarry Smith 2059dfb205c3SBarry Smith values = (PetscScalar*)V; 2060dfb205c3SBarry Smith if (!values) { 2061580bdb30SBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2062dfb205c3SBarry Smith } 2063dfb205c3SBarry Smith for (i=0; i<m; i++) { 2064dfb205c3SBarry Smith PetscInt row = i + rstart; 2065dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2066dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2067bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2068dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2069dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2070bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2071bb80cfbbSStefano Zampini PetscInt j; 20720cd7f59aSBarry Smith for (j=0; j<ncols; j++) { 20730cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 20740cd7f59aSBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 20750cd7f59aSBarry Smith } 20760cd7f59aSBarry Smith } 2077dfb205c3SBarry Smith } 2078dfb205c3SBarry Smith 2079dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 20803bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20813bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 2082dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2083dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20843bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20853bd0feecSPierre Jolivet 20867827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2087dfb205c3SBarry Smith PetscFunctionReturn(0); 2088dfb205c3SBarry Smith } 2089dfb205c3SBarry Smith 20900bad9183SKris Buschelman /*MC 2091fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2092828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2093828413b8SBarry Smith the matrix is stored. 2094828413b8SBarry Smith 2095828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2096828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20970bad9183SKris Buschelman 20980bad9183SKris Buschelman Options Database Keys: 20990bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 21000bad9183SKris Buschelman 2101476417e5SBarry Smith Notes: 2102476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2103476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2104476417e5SBarry Smith 21050bad9183SKris Buschelman Level: beginner 21060bad9183SKris Buschelman 2107fd292e60Sprj- .seealso: MatCreateBAIJ(), MATSEQSBAIJ, MatType 21080bad9183SKris Buschelman M*/ 21090bad9183SKris Buschelman 21108cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2111b5df2d14SHong Zhang { 2112b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2113dfbe8321SBarry Smith PetscErrorCode ierr; 211494ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2115b5df2d14SHong Zhang 2116b5df2d14SHong Zhang PetscFunctionBegin; 2117b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2118b0a32e0cSBarry Smith B->data = (void*)b; 2119b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2120b5df2d14SHong Zhang 2121b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2122b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2123b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2124b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 212526fbe8dcSKarl Rupp 2126ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRMPI(ierr); 2127ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRMPI(ierr); 2128b5df2d14SHong Zhang 2129b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2130854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2131b5df2d14SHong Zhang 2132b5df2d14SHong Zhang /* build cache for off array entries formed */ 2133ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 213426fbe8dcSKarl Rupp 2135b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21360298fd71SBarry Smith b->colmap = NULL; 21370298fd71SBarry Smith b->garray = NULL; 2138b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2139b5df2d14SHong Zhang 2140b5df2d14SHong Zhang /* stuff used in block assembly */ 2141f4259b30SLisandro Dalcin b->barray = NULL; 2142b5df2d14SHong Zhang 2143b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2144f4259b30SLisandro Dalcin b->lvec = NULL; 2145f4259b30SLisandro Dalcin b->Mvctx = NULL; 2146f4259b30SLisandro Dalcin b->slvec0 = NULL; 2147f4259b30SLisandro Dalcin b->slvec0b = NULL; 2148f4259b30SLisandro Dalcin b->slvec1 = NULL; 2149f4259b30SLisandro Dalcin b->slvec1a = NULL; 2150f4259b30SLisandro Dalcin b->slvec1b = NULL; 2151f4259b30SLisandro Dalcin b->sMvctx = NULL; 2152b5df2d14SHong Zhang 2153b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2154f4259b30SLisandro Dalcin b->rowindices = NULL; 2155f4259b30SLisandro Dalcin b->rowvalues = NULL; 2156b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2157b5df2d14SHong Zhang 2158b5df2d14SHong Zhang /* hash table stuff */ 2159f4259b30SLisandro Dalcin b->ht = NULL; 2160f4259b30SLisandro Dalcin b->hd = NULL; 2161b5df2d14SHong Zhang b->ht_size = 0; 2162b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2163b5df2d14SHong Zhang b->ht_fact = 0; 2164b5df2d14SHong Zhang b->ht_total_ct = 0; 2165b5df2d14SHong Zhang b->ht_insert_ct = 0; 2166b5df2d14SHong Zhang 21677dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21687a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21697a868f3eSHong Zhang 2170f4259b30SLisandro Dalcin b->in_loc = NULL; 2171f4259b30SLisandro Dalcin b->v_loc = NULL; 217259ffdab8SBarry Smith b->n_loc = 0; 217394ae4db5SBarry Smith 2174bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2175bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2176bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2177bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 21786214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21796214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 21806214f412SHong Zhang #endif 2181d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2182d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK);CHKERRQ(ierr); 2183d24d4204SJose E. Roman #endif 218428d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 218528d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 2186aa5a9175SDahai Guo 218723ce1328SBarry Smith B->symmetric = PETSC_TRUE; 218823ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 218923ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 219023ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 21919899f194SHong Zhang B->symmetric_eternal = PETSC_TRUE; 2192eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 219313647f61SHong Zhang B->hermitian = PETSC_FALSE; 219413647f61SHong Zhang B->hermitian_set = PETSC_FALSE; 2195eb1ec7c1SStefano Zampini #else 2196eb1ec7c1SStefano Zampini B->hermitian = PETSC_TRUE; 2197eb1ec7c1SStefano Zampini B->hermitian_set = PETSC_TRUE; 2198eb1ec7c1SStefano Zampini #endif 219913647f61SHong Zhang 220017667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 220194ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 220294ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 220394ae4db5SBarry Smith if (flg) { 220494ae4db5SBarry Smith PetscReal fact = 1.39; 220594ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 220694ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 220794ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 220894ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 220994ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 221094ae4db5SBarry Smith } 221194ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2212b5df2d14SHong Zhang PetscFunctionReturn(0); 2213b5df2d14SHong Zhang } 2214b5df2d14SHong Zhang 2215209238afSKris Buschelman /*MC 2216002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2217209238afSKris Buschelman 2218209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2219209238afSKris Buschelman and MATMPISBAIJ otherwise. 2220209238afSKris Buschelman 2221209238afSKris Buschelman Options Database Keys: 2222209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2223209238afSKris Buschelman 2224209238afSKris Buschelman Level: beginner 2225209238afSKris Buschelman 2226209238afSKris Buschelman .seealso: MatCreateMPISBAIJ, MATSEQSBAIJ, MATMPISBAIJ 2227209238afSKris Buschelman M*/ 2228209238afSKris Buschelman 2229b5df2d14SHong Zhang /*@C 2230b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2231b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2232b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2233b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2234b5df2d14SHong Zhang 2235b5df2d14SHong Zhang Collective on Mat 2236b5df2d14SHong Zhang 2237b5df2d14SHong Zhang Input Parameters: 22381c4f3114SJed Brown + B - the matrix 2239bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2240bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2241b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2242b5df2d14SHong Zhang submatrix (same for all local rows) 2243b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22446d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22450298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 224695742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2247b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2248b5df2d14SHong Zhang submatrix (same for all local rows). 2249b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2250c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22510298fd71SBarry Smith (possibly different for each block row) or NULL. 2252b5df2d14SHong Zhang 2253b5df2d14SHong Zhang 2254b5df2d14SHong Zhang Options Database Keys: 2255a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2256b5df2d14SHong Zhang block calculations (much slower) 2257a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2258b5df2d14SHong Zhang 2259b5df2d14SHong Zhang Notes: 2260b5df2d14SHong Zhang 2261b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2262b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2263b5df2d14SHong Zhang 226449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 226549a6f317SBarry Smith 2266b5df2d14SHong Zhang Storage Information: 2267b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2268b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2269b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2270b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2271b5df2d14SHong Zhang 2272b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2273b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 22740298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2275b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2276b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2277b5df2d14SHong Zhang 2278aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2279aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2280aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2281aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2282aa95bbe8SBarry Smith 2283b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2284b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2285b5df2d14SHong Zhang 2286b5df2d14SHong Zhang .vb 2287b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2288a4b1a0f6SJed Brown -------------------------- 2289c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2290c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2291c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2292a4b1a0f6SJed Brown -------------------------- 2293b5df2d14SHong Zhang .ve 2294b5df2d14SHong Zhang 2295b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2296b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22976d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22986d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2299b5df2d14SHong Zhang 23006d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23016d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2302c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2303c2fc9fa9SBarry Smith 2304b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2305b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2306b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2307b5df2d14SHong Zhang matrices. 2308b5df2d14SHong Zhang 2309b5df2d14SHong Zhang Level: intermediate 2310b5df2d14SHong Zhang 2311ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2312b5df2d14SHong Zhang @*/ 23137087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2314b5df2d14SHong Zhang { 23154ac538c5SBarry Smith PetscErrorCode ierr; 2316b5df2d14SHong Zhang 2317b5df2d14SHong Zhang PetscFunctionBegin; 23186ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 23196ba663aaSJed Brown PetscValidType(B,1); 23206ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 23214ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2322b5df2d14SHong Zhang PetscFunctionReturn(0); 2323b5df2d14SHong Zhang } 2324b5df2d14SHong Zhang 2325a30f8f8cSSatish Balay /*@C 232669b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2327a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2328a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2329a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2330a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2331a30f8f8cSSatish Balay 2332d083f849SBarry Smith Collective 2333a30f8f8cSSatish Balay 2334a30f8f8cSSatish Balay Input Parameters: 2335a30f8f8cSSatish Balay + comm - MPI communicator 2336bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2337bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2338a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2339a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2340a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2341a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2342a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2343a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2344a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2345a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2346a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2347a30f8f8cSSatish Balay submatrix (same for all local rows) 2348a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23496d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23500298fd71SBarry Smith (possibly different for each block block row) or NULL. 235195742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 235295742e49SBarry Smith set its value even if it is zero. 2353a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2354a30f8f8cSSatish Balay submatrix (same for all local rows). 2355a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2356a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23570298fd71SBarry Smith each block row) or NULL. 2358a30f8f8cSSatish Balay 2359a30f8f8cSSatish Balay Output Parameter: 2360a30f8f8cSSatish Balay . A - the matrix 2361a30f8f8cSSatish Balay 2362a30f8f8cSSatish Balay Options Database Keys: 2363a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2364a30f8f8cSSatish Balay block calculations (much slower) 2365a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2366a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2367a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2368a30f8f8cSSatish Balay 2369175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2370f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2371175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2372175b88e8SBarry Smith 2373a30f8f8cSSatish Balay Notes: 2374d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23756d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2376d1be2dadSMatthew Knepley 2377a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2378a30f8f8cSSatish Balay (possibly both). 2379a30f8f8cSSatish Balay 2380a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2381a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2382a30f8f8cSSatish Balay 238349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 238449a6f317SBarry Smith 2385a30f8f8cSSatish Balay Storage Information: 2386a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2387a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2388a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2389a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2390a30f8f8cSSatish Balay 2391a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2392a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 23930298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2394a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2395a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2396a30f8f8cSSatish Balay 2397a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2398a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2399a30f8f8cSSatish Balay 2400a30f8f8cSSatish Balay .vb 2401a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2402a4b1a0f6SJed Brown -------------------------- 2403c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2404c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2405c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2406a4b1a0f6SJed Brown -------------------------- 2407a30f8f8cSSatish Balay .ve 2408a30f8f8cSSatish Balay 2409a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2410a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24116d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24126d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2413a30f8f8cSSatish Balay 24146d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 24156d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2416a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2417a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2418a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2419a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2420a30f8f8cSSatish Balay matrices. 2421a30f8f8cSSatish Balay 2422a30f8f8cSSatish Balay Level: intermediate 2423a30f8f8cSSatish Balay 242469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2425a30f8f8cSSatish Balay @*/ 2426a30f8f8cSSatish Balay 242769b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2428a30f8f8cSSatish Balay { 24296849ba73SBarry Smith PetscErrorCode ierr; 24301302d50aSBarry Smith PetscMPIInt size; 2431a30f8f8cSSatish Balay 2432a30f8f8cSSatish Balay PetscFunctionBegin; 2433f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2434f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2435ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2436273d9f13SBarry Smith if (size > 1) { 2437b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2438b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2439273d9f13SBarry Smith } else { 2440273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2441273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2442273d9f13SBarry Smith } 2443a30f8f8cSSatish Balay PetscFunctionReturn(0); 2444a30f8f8cSSatish Balay } 2445a30f8f8cSSatish Balay 2446a30f8f8cSSatish Balay 24476849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2448a30f8f8cSSatish Balay { 2449a30f8f8cSSatish Balay Mat mat; 2450a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2451dfbe8321SBarry Smith PetscErrorCode ierr; 2452d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2453387bc808SHong Zhang PetscScalar *array; 2454a30f8f8cSSatish Balay 2455a30f8f8cSSatish Balay PetscFunctionBegin; 2456f4259b30SLisandro Dalcin *newmat = NULL; 245726fbe8dcSKarl Rupp 2458ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2459d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 24607adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 24611e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 24621e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2463e1b6402fSHong Zhang 2464d5f3da31SBarry Smith mat->factortype = matin->factortype; 2465273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 246682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24677fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24687fff6886SHong Zhang 2469b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2470a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2471a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2472a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2473a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2474a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2475a30f8f8cSSatish Balay 2476a30f8f8cSSatish Balay a->size = oldmat->size; 2477a30f8f8cSSatish Balay a->rank = oldmat->rank; 2478a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2479a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2480f4259b30SLisandro Dalcin a->rowindices = NULL; 2481f4259b30SLisandro Dalcin a->rowvalues = NULL; 2482a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2483f4259b30SLisandro Dalcin a->barray = NULL; 2484899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2485899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2486899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2487899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2488a30f8f8cSSatish Balay 2489a30f8f8cSSatish Balay /* hash table stuff */ 2490f4259b30SLisandro Dalcin a->ht = NULL; 2491f4259b30SLisandro Dalcin a->hd = NULL; 2492a30f8f8cSSatish Balay a->ht_size = 0; 2493a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2494a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2495a30f8f8cSSatish Balay a->ht_total_ct = 0; 2496a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2497a30f8f8cSSatish Balay 2498580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr); 2499a30f8f8cSSatish Balay if (oldmat->colmap) { 2500a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2501a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2502a30f8f8cSSatish Balay #else 2503854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 25043bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2505580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 2506a30f8f8cSSatish Balay #endif 2507f4259b30SLisandro Dalcin } else a->colmap = NULL; 2508387bc808SHong Zhang 2509a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2510785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 25113bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2512580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 2513f4259b30SLisandro Dalcin } else a->garray = NULL; 2514a30f8f8cSSatish Balay 2515ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2516a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 25173bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2518a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 25193bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 252082327fa8SHong Zhang 252182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 25223bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 252382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 25243bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2525387bc808SHong Zhang 2526387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 25271ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2528778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2529778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 25301ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 25311ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2532778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 25331ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 25343bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 25353bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 25363bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 25373bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 25383bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2539387bc808SHong Zhang 2540387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2541387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2542387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 25433bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 254482327fa8SHong Zhang 2545a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25463bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2547a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 25483bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2549140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2550a30f8f8cSSatish Balay *newmat = mat; 2551a30f8f8cSSatish Balay PetscFunctionReturn(0); 2552a30f8f8cSSatish Balay } 2553a30f8f8cSSatish Balay 2554618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2555618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2556618cc2edSLisandro Dalcin 2557618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer) 255895936485SShri Abhyankar { 255995936485SShri Abhyankar PetscErrorCode ierr; 25607f489da9SVaclav Hapla PetscBool isbinary; 256195936485SShri Abhyankar 256295936485SShri Abhyankar PetscFunctionBegin; 25637f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 2564618cc2edSLisandro Dalcin if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 2565618cc2edSLisandro Dalcin ierr = MatLoad_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 256695936485SShri Abhyankar PetscFunctionReturn(0); 256795936485SShri Abhyankar } 256895936485SShri Abhyankar 2569dcf5cc72SBarry Smith /*XXXXX@ 2570a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2571a30f8f8cSSatish Balay 2572a30f8f8cSSatish Balay Input Parameters: 2573a30f8f8cSSatish Balay . mat - the matrix 2574a30f8f8cSSatish Balay . fact - factor 2575a30f8f8cSSatish Balay 2576c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2577a30f8f8cSSatish Balay 2578a30f8f8cSSatish Balay Level: advanced 2579a30f8f8cSSatish Balay 2580a30f8f8cSSatish Balay Notes: 2581a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2582a30f8f8cSSatish Balay 2583a30f8f8cSSatish Balay .seealso: MatSetOption() 2584dcf5cc72SBarry Smith @XXXXX*/ 2585dcf5cc72SBarry Smith 258624d5174aSHong Zhang 2587985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 258824d5174aSHong Zhang { 258924d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2590f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2591ca54ac64SHong Zhang PetscReal atmp; 259287828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2593dfbe8321SBarry Smith PetscErrorCode ierr; 25941302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25951302d50aSBarry Smith PetscMPIInt rank,size; 25961302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 259787828ca2SBarry Smith PetscScalar *va; 25988a1c53f2SBarry Smith MatScalar *ba; 2599f4c0e9e4SHong Zhang MPI_Status stat; 260024d5174aSHong Zhang 260124d5174aSHong Zhang PetscFunctionBegin; 2602e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 26030298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 26041ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2605f4c0e9e4SHong Zhang 2606ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 2607ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRMPI(ierr); 2608f4c0e9e4SHong Zhang 2609d0f46423SBarry Smith bs = A->rmap->bs; 2610f4c0e9e4SHong Zhang mbs = a->mbs; 2611f4c0e9e4SHong Zhang Mbs = a->Mbs; 2612f4c0e9e4SHong Zhang ba = b->a; 2613f4c0e9e4SHong Zhang bi = b->i; 2614f4c0e9e4SHong Zhang bj = b->j; 2615f4c0e9e4SHong Zhang 2616f4c0e9e4SHong Zhang /* find ownerships */ 2617d0f46423SBarry Smith rowners_bs = A->rmap->range; 2618f4c0e9e4SHong Zhang 2619f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2620580bdb30SBarry Smith ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2621f4c0e9e4SHong Zhang 2622f4c0e9e4SHong Zhang /* row_max for B */ 2623b8475685SHong Zhang if (rank != size-1) { 2624f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2625f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2626f4c0e9e4SHong Zhang brow = bs*i; 2627f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2628f4c0e9e4SHong Zhang bcol = bs*(*bj); 2629f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2630ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 263104d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2632f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2633f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2634ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2635ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2636f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2637f4c0e9e4SHong Zhang } 2638f4c0e9e4SHong Zhang } 2639f4c0e9e4SHong Zhang bj++; 2640f4c0e9e4SHong Zhang } 2641f4c0e9e4SHong Zhang } 2642f4c0e9e4SHong Zhang 2643f4c0e9e4SHong Zhang /* send values to its owners */ 2644f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2645f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2646ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 264755b25c41SPierre Jolivet ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 2648ca54ac64SHong Zhang } 2649f4c0e9e4SHong Zhang } 2650f4c0e9e4SHong Zhang 2651f4c0e9e4SHong Zhang /* receive values */ 2652ca54ac64SHong Zhang if (rank) { 2653f4c0e9e4SHong Zhang rvalues = work; 2654ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2655f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2656ffc4695bSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRMPI(ierr); 2657f4c0e9e4SHong Zhang /* process values */ 2658f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2659ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2660f4c0e9e4SHong Zhang } 2661f4c0e9e4SHong Zhang } 2662ca54ac64SHong Zhang } 2663f4c0e9e4SHong Zhang 26641ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2665ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 266624d5174aSHong Zhang PetscFunctionReturn(0); 266724d5174aSHong Zhang } 26682798e883SHong Zhang 266941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 26702798e883SHong Zhang { 26712798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2672dfbe8321SBarry Smith PetscErrorCode ierr; 2673d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 26743649974fSBarry Smith PetscScalar *x,*ptr,*from; 2675ffe4fb16SHong Zhang Vec bb1; 26763649974fSBarry Smith const PetscScalar *b; 2677ffe4fb16SHong Zhang 2678ffe4fb16SHong Zhang PetscFunctionBegin; 2679e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2680e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2681ffe4fb16SHong Zhang 2682a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 268341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2684a2b30743SBarry Smith PetscFunctionReturn(0); 2685a2b30743SBarry Smith } 2686a2b30743SBarry Smith 2687ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2688ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 268941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2690ffe4fb16SHong Zhang its--; 2691ffe4fb16SHong Zhang } 2692ffe4fb16SHong Zhang 2693ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2694ffe4fb16SHong Zhang while (its--) { 2695ffe4fb16SHong Zhang 2696ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2697ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2698ffe4fb16SHong Zhang 2699ffe4fb16SHong Zhang /* copy xx into slvec0a */ 27001ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 27011ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2702580bdb30SBarry Smith ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr); 27031ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2704ffe4fb16SHong Zhang 2705efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2706ffe4fb16SHong Zhang 2707ffe4fb16SHong Zhang /* copy bb into slvec1a */ 27081ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 27093649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2710580bdb30SBarry Smith ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr); 27111ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2712ffe4fb16SHong Zhang 2713ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2714fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2715ffe4fb16SHong Zhang 2716ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27171ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2718a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2719ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2720ffe4fb16SHong Zhang 2721ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2722ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2723ffe4fb16SHong Zhang 2724ffe4fb16SHong Zhang /* local diagonal sweep */ 272541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2726ffe4fb16SHong Zhang } 27276bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2728fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 272941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2730fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 273141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2732fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2733fa22f6d0SBarry Smith Vec xx1; 2734ace3abfcSBarry Smith PetscBool hasop; 273520f1ed55SBarry Smith const PetscScalar *diag; 2736887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 273720f1ed55SBarry Smith PetscInt i,n; 2738fa22f6d0SBarry Smith 2739fa22f6d0SBarry Smith if (!mat->xx1) { 2740fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2741fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2742fa22f6d0SBarry Smith } 2743fa22f6d0SBarry Smith xx1 = mat->xx1; 2744fa22f6d0SBarry Smith bb1 = mat->bb1; 2745fa22f6d0SBarry Smith 274641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2747fa22f6d0SBarry Smith 2748fa22f6d0SBarry Smith if (!mat->diag) { 2749effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27502a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2751fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2752fa22f6d0SBarry Smith } 2753fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2754fa22f6d0SBarry Smith 2755fa22f6d0SBarry Smith if (hasop) { 2756fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2757887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 275820f1ed55SBarry Smith } else { 275920f1ed55SBarry Smith /* 276020f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 276120f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2762887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 276320f1ed55SBarry Smith */ 276420f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27653649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27663649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 276720f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 276820f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2769887ee2caSBarry Smith if (omega == 1.0) { 277026fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 277120f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2772887ee2caSBarry Smith } else { 277326fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2774887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2775887ee2caSBarry Smith } 277620f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27773649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27783649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 277920f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 278020f1ed55SBarry Smith } 2781fa22f6d0SBarry Smith 2782fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2783fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2784fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2785fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2786fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2787580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 2788fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2789fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2790fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2791fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2792effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2793fa22f6d0SBarry Smith 2794fa22f6d0SBarry Smith /* local sweep */ 279541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2796fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2797f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2798ffe4fb16SHong Zhang PetscFunctionReturn(0); 2799ffe4fb16SHong Zhang } 2800ffe4fb16SHong Zhang 2801dfb205c3SBarry Smith /*@ 2802dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2803dfb205c3SBarry Smith CSR format the local rows. 2804dfb205c3SBarry Smith 2805d083f849SBarry Smith Collective 2806dfb205c3SBarry Smith 2807dfb205c3SBarry Smith Input Parameters: 2808dfb205c3SBarry Smith + comm - MPI communicator 2809dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2810dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2811dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2812dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2813dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2814dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2815dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2816483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2817dfb205c3SBarry Smith . j - column indices 2818dfb205c3SBarry Smith - a - matrix values 2819dfb205c3SBarry Smith 2820dfb205c3SBarry Smith Output Parameter: 2821dfb205c3SBarry Smith . mat - the matrix 2822dfb205c3SBarry Smith 2823dfb205c3SBarry Smith Level: intermediate 2824dfb205c3SBarry Smith 2825dfb205c3SBarry Smith Notes: 2826dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2827dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2828dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2829dfb205c3SBarry Smith 2830dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2831dfb205c3SBarry Smith 2832dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 283369b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2834dfb205c3SBarry Smith @*/ 28357087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2836dfb205c3SBarry Smith { 2837dfb205c3SBarry Smith PetscErrorCode ierr; 2838dfb205c3SBarry Smith 2839dfb205c3SBarry Smith 2840dfb205c3SBarry Smith PetscFunctionBegin; 2841f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2842dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2843dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2844dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2845dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2846dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2847dfb205c3SBarry Smith PetscFunctionReturn(0); 2848dfb205c3SBarry Smith } 2849dfb205c3SBarry Smith 2850dfb205c3SBarry Smith 2851dfb205c3SBarry Smith /*@C 2852664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 2853dfb205c3SBarry Smith 2854d083f849SBarry Smith Collective 2855dfb205c3SBarry Smith 2856dfb205c3SBarry Smith Input Parameters: 28571c4f3114SJed Brown + B - the matrix 2858dfb205c3SBarry Smith . bs - the block size 2859dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2860dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2861dfb205c3SBarry Smith - v - optional values in the matrix 2862dfb205c3SBarry Smith 2863664954b6SBarry Smith Level: advanced 2864664954b6SBarry Smith 2865664954b6SBarry Smith Notes: 28660cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28670cd7f59aSBarry Smith and usually the numerical values as well 28680cd7f59aSBarry Smith 286950c5228eSBarry Smith Any entries below the diagonal are ignored 2870dfb205c3SBarry Smith 287169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2872dfb205c3SBarry Smith @*/ 28737087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2874dfb205c3SBarry Smith { 28754ac538c5SBarry Smith PetscErrorCode ierr; 2876dfb205c3SBarry Smith 2877dfb205c3SBarry Smith PetscFunctionBegin; 28784ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2879dfb205c3SBarry Smith PetscFunctionReturn(0); 2880dfb205c3SBarry Smith } 2881dfb205c3SBarry Smith 288210c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 28834dcd73b1SHong Zhang { 28844dcd73b1SHong Zhang PetscErrorCode ierr; 288510c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 288610c56fdeSHong Zhang PetscInt *indx; 288710c56fdeSHong Zhang PetscScalar *values; 2888dfb205c3SBarry Smith 28894dcd73b1SHong Zhang PetscFunctionBegin; 28904dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 289110c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 289210c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 2893de25e9cbSPierre Jolivet PetscInt *dnz,*onz,mbs,Nbs,nbs; 289410c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 2895de25e9cbSPierre Jolivet PetscMPIInt rank,size; 28964dcd73b1SHong Zhang 289710c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 289810c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 289910c56fdeSHong Zhang if (n == PETSC_DECIDE) { 2900da91a574SPierre Jolivet ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N); 290110c56fdeSHong Zhang } 2902da91a574SPierre Jolivet nbs = n/cbs; 29034dcd73b1SHong Zhang 29044dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 2905de25e9cbSPierre Jolivet ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 2906de25e9cbSPierre Jolivet 2907ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 2908ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&size);CHKERRMPI(ierr); 2909de25e9cbSPierre Jolivet if (rank == size-1) { 2910de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 2911de25e9cbSPierre Jolivet if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 2912de25e9cbSPierre Jolivet } 2913de25e9cbSPierre Jolivet 2914de25e9cbSPierre Jolivet rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 2915e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 291610c56fdeSHong Zhang for (i=0; i<mbs; i++) { 29174dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 29184dcd73b1SHong Zhang nnz = nnz/bs; 29194dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 29204dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 29214dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 29224dcd73b1SHong Zhang } 2923e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 29244dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 29254dcd73b1SHong Zhang 29264dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 2927de25e9cbSPierre Jolivet ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 29284dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 2929ce94fc41SPierre Jolivet ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr); 2930ce94fc41SPierre Jolivet ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 29314dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 29324dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 29334dcd73b1SHong Zhang } 29344dcd73b1SHong Zhang 293510c56fdeSHong Zhang /* numeric phase */ 29364dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 293710c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 29384dcd73b1SHong Zhang 2939e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 29404dcd73b1SHong Zhang for (i=0; i<m; i++) { 29414dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29424dcd73b1SHong Zhang Ii = i + rstart; 294310c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 29444dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29454dcd73b1SHong Zhang } 2946e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 294710c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 294810c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29494dcd73b1SHong Zhang PetscFunctionReturn(0); 29504dcd73b1SHong Zhang } 2951