1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*); 12d24d4204SJose E. Roman #endif 13b147fbf3SStefano Zampini 14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 16b147fbf3SStefano Zampini { 17b147fbf3SStefano Zampini Mat preallocator; 18b147fbf3SStefano Zampini PetscInt r,rstart,rend; 19b147fbf3SStefano Zampini PetscInt bs,i,m,n,M,N; 20b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 21b147fbf3SStefano Zampini PetscErrorCode ierr; 22b147fbf3SStefano Zampini 23b147fbf3SStefano Zampini PetscFunctionBegin; 24b147fbf3SStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 25b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B,nm,2); 26b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 27b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i],MAT_CLASSID,3); 28b147fbf3SStefano Zampini ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr); 29b147fbf3SStefano Zampini if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts"); 30b147fbf3SStefano Zampini } 31b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B,fill,5); 32b147fbf3SStefano Zampini ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr); 33b147fbf3SStefano Zampini ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr); 34b147fbf3SStefano Zampini ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr); 35b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr); 36b147fbf3SStefano Zampini ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr); 37b147fbf3SStefano Zampini ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr); 38b147fbf3SStefano Zampini ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr); 39b147fbf3SStefano Zampini ierr = MatSetUp(preallocator);CHKERRQ(ierr); 40b147fbf3SStefano Zampini ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr); 41b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 42b147fbf3SStefano Zampini PetscInt ncols; 43b147fbf3SStefano Zampini const PetscInt *row; 44b147fbf3SStefano Zampini const PetscScalar *vals; 45b147fbf3SStefano Zampini 46b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 47b147fbf3SStefano Zampini ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 48b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 49b147fbf3SStefano Zampini if (symm && symm[i]) { 50b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 51b147fbf3SStefano Zampini } 52b147fbf3SStefano Zampini ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 53b147fbf3SStefano Zampini } 54b147fbf3SStefano Zampini } 55b147fbf3SStefano Zampini ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 56b147fbf3SStefano Zampini ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 57b147fbf3SStefano Zampini ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr); 58b147fbf3SStefano Zampini ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 59b147fbf3SStefano Zampini PetscFunctionReturn(0); 60b147fbf3SStefano Zampini } 61b147fbf3SStefano Zampini 6228d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 63b147fbf3SStefano Zampini { 64b147fbf3SStefano Zampini Mat B; 65b147fbf3SStefano Zampini PetscErrorCode ierr; 66b147fbf3SStefano Zampini PetscInt r; 67b147fbf3SStefano Zampini 68b147fbf3SStefano Zampini PetscFunctionBegin; 69b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 7028d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE,isdense; 71b147fbf3SStefano Zampini PetscInt bs; 72b147fbf3SStefano Zampini 73b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 74b147fbf3SStefano Zampini ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 75b147fbf3SStefano Zampini ierr = MatSetType(B,newtype);CHKERRQ(ierr); 76b147fbf3SStefano Zampini ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr); 77b147fbf3SStefano Zampini ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr); 78b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 79b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 8028d58a37SPierre Jolivet ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 8128d58a37SPierre Jolivet if (!isdense) { 82b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 83b147fbf3SStefano Zampini ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr); 84b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 8528d58a37SPierre Jolivet } else { 8628d58a37SPierre Jolivet ierr = MatSetUp(B);CHKERRQ(ierr); 8728d58a37SPierre Jolivet } 8828d58a37SPierre Jolivet } else { 8928d58a37SPierre Jolivet B = *newmat; 9028d58a37SPierre Jolivet ierr = MatZeroEntries(B);CHKERRQ(ierr); 9128d58a37SPierre Jolivet } 92b147fbf3SStefano Zampini 93b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 94b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 95b147fbf3SStefano Zampini PetscInt ncols; 96b147fbf3SStefano Zampini const PetscInt *row; 97b147fbf3SStefano Zampini const PetscScalar *vals; 98b147fbf3SStefano Zampini 99b147fbf3SStefano Zampini ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 100b147fbf3SStefano Zampini ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 101eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 102eb1ec7c1SStefano Zampini if (A->hermitian) { 103eb1ec7c1SStefano Zampini PetscInt i; 104eb1ec7c1SStefano Zampini for (i = 0; i < ncols; i++) { 105eb1ec7c1SStefano Zampini ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr); 106eb1ec7c1SStefano Zampini } 107eb1ec7c1SStefano Zampini } else { 108b147fbf3SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 109eb1ec7c1SStefano Zampini } 110eb1ec7c1SStefano Zampini #else 111eb1ec7c1SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 112eb1ec7c1SStefano Zampini #endif 113b147fbf3SStefano Zampini ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 114b147fbf3SStefano Zampini } 115b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 116b147fbf3SStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 117b147fbf3SStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 118b147fbf3SStefano Zampini 119b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 120b147fbf3SStefano Zampini ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 121b147fbf3SStefano Zampini } else { 122b147fbf3SStefano Zampini *newmat = B; 123b147fbf3SStefano Zampini } 124b147fbf3SStefano Zampini PetscFunctionReturn(0); 125b147fbf3SStefano Zampini } 126b147fbf3SStefano Zampini 1277087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 128a30f8f8cSSatish Balay { 129f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 130dfbe8321SBarry Smith PetscErrorCode ierr; 131a30f8f8cSSatish Balay 132a30f8f8cSSatish Balay PetscFunctionBegin; 133a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 134a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 135a30f8f8cSSatish Balay PetscFunctionReturn(0); 136a30f8f8cSSatish Balay } 137a30f8f8cSSatish Balay 1387087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 139a30f8f8cSSatish Balay { 140f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 141dfbe8321SBarry Smith PetscErrorCode ierr; 142a30f8f8cSSatish Balay 143a30f8f8cSSatish Balay PetscFunctionBegin; 144a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 145a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 146a30f8f8cSSatish Balay PetscFunctionReturn(0); 147a30f8f8cSSatish Balay } 148a30f8f8cSSatish Balay 149d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 150a30f8f8cSSatish Balay { \ 151a30f8f8cSSatish Balay brow = row/bs; \ 152a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 153a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 154a30f8f8cSSatish Balay bcol = col/bs; \ 155a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 156a30f8f8cSSatish Balay low = 0; high = nrow; \ 157a30f8f8cSSatish Balay while (high-low > 3) { \ 158a30f8f8cSSatish Balay t = (low+high)/2; \ 159a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 160a30f8f8cSSatish Balay else low = t; \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 163a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 164a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 165a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 166a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 167a30f8f8cSSatish Balay else *bap = value; \ 168a30f8f8cSSatish Balay goto a_noinsert; \ 169a30f8f8cSSatish Balay } \ 170a30f8f8cSSatish Balay } \ 171a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 172d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 173fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 174a30f8f8cSSatish Balay N = nrow++ - 1; \ 175a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 176580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 177580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 178580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 179a30f8f8cSSatish Balay rp[_i] = bcol; \ 180a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 181e56f5c9eSBarry Smith A->nonzerostate++;\ 182a30f8f8cSSatish Balay a_noinsert:; \ 183a30f8f8cSSatish Balay ailen[brow] = nrow; \ 184a30f8f8cSSatish Balay } 185e5e170daSBarry Smith 186d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 187a30f8f8cSSatish Balay { \ 188a30f8f8cSSatish Balay brow = row/bs; \ 189a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 190a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 191a30f8f8cSSatish Balay bcol = col/bs; \ 192a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 193a30f8f8cSSatish Balay low = 0; high = nrow; \ 194a30f8f8cSSatish Balay while (high-low > 3) { \ 195a30f8f8cSSatish Balay t = (low+high)/2; \ 196a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 197a30f8f8cSSatish Balay else low = t; \ 198a30f8f8cSSatish Balay } \ 199a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 200a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 201a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 202a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 203a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 204a30f8f8cSSatish Balay else *bap = value; \ 205a30f8f8cSSatish Balay goto b_noinsert; \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay } \ 208a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 209d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 210fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 211a30f8f8cSSatish Balay N = nrow++ - 1; \ 212a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 213580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 214580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 215580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay rp[_i] = bcol; \ 217a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 218e56f5c9eSBarry Smith B->nonzerostate++;\ 219a30f8f8cSSatish Balay b_noinsert:; \ 220a30f8f8cSSatish Balay bilen[brow] = nrow; \ 221a30f8f8cSSatish Balay } 222a30f8f8cSSatish Balay 223a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 224476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 225a30f8f8cSSatish Balay */ 226dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 227a30f8f8cSSatish Balay { 228a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 229a30f8f8cSSatish Balay MatScalar value; 230ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 231dfbe8321SBarry Smith PetscErrorCode ierr; 2321302d50aSBarry Smith PetscInt i,j,row,col; 233d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 234d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 235d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 236a30f8f8cSSatish Balay 237a30f8f8cSSatish Balay /* Some Variables required in the macro */ 238a30f8f8cSSatish Balay Mat A = baij->A; 239a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2401302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 241a30f8f8cSSatish Balay MatScalar *aa =a->a; 242a30f8f8cSSatish Balay 243a30f8f8cSSatish Balay Mat B = baij->B; 244a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2451302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 246a30f8f8cSSatish Balay MatScalar *ba =b->a; 247a30f8f8cSSatish Balay 2481302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2491302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 250a30f8f8cSSatish Balay MatScalar *ap,*bap; 251a30f8f8cSSatish Balay 252a30f8f8cSSatish Balay /* for stash */ 2530298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2540298fd71SBarry Smith MatScalar *v_loc = NULL; 255a30f8f8cSSatish Balay 256a30f8f8cSSatish Balay PetscFunctionBegin; 257a30f8f8cSSatish Balay if (!baij->donotstash) { 25859ffdab8SBarry Smith if (n > baij->n_loc) { 25959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 26059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 261785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 262785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 26326fbe8dcSKarl Rupp 26459ffdab8SBarry Smith baij->n_loc = n; 26559ffdab8SBarry Smith } 26659ffdab8SBarry Smith in_loc = baij->in_loc; 26759ffdab8SBarry Smith v_loc = baij->v_loc; 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay 270a30f8f8cSSatish Balay for (i=0; i<m; i++) { 271a30f8f8cSSatish Balay if (im[i] < 0) continue; 272c1758adbSBarry Smith if (PetscUnlikely(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 273a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 274a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 275a30f8f8cSSatish Balay for (j=0; j<n; j++) { 27601b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 27701b2bd88SHong Zhang if (a->ignore_ltriangular) { 27801b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 27926fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 28001b2bd88SHong Zhang } 281a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 282a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 283a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 284a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 285db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 286db4deed7SKarl Rupp else value = v[i+j*m]; 287d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 288a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 289a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 290c1758adbSBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 291a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 292a30f8f8cSSatish Balay if (mat->was_assembled) { 293a30f8f8cSSatish Balay if (!baij->colmap) { 294ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 295a30f8f8cSSatish Balay } 296a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 297a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 29871730473SSatish Balay col = col - 1; 299a30f8f8cSSatish Balay #else 30071730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 301a30f8f8cSSatish Balay #endif 302a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 303ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 304a30f8f8cSSatish Balay col = in[j]; 305a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 306a30f8f8cSSatish Balay B = baij->B; 307a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 308a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 309a30f8f8cSSatish Balay ba = b->a; 31071730473SSatish Balay } else col += in[j]%bs; 311a30f8f8cSSatish Balay } else col = in[j]; 312db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 313db4deed7SKarl Rupp else value = v[i+j*m]; 314d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 315a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay } else { /* off processor entry */ 3194cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 320a30f8f8cSSatish Balay if (!baij->donotstash) { 3215080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 322a30f8f8cSSatish Balay n_loc = 0; 323a30f8f8cSSatish Balay for (j=0; j<n; j++) { 324f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 325a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 326a30f8f8cSSatish Balay if (roworiented) { 327a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 328a30f8f8cSSatish Balay } else { 329a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 330a30f8f8cSSatish Balay } 331a30f8f8cSSatish Balay n_loc++; 332a30f8f8cSSatish Balay } 333b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 334a30f8f8cSSatish Balay } 335a30f8f8cSSatish Balay } 336a30f8f8cSSatish Balay } 337a30f8f8cSSatish Balay PetscFunctionReturn(0); 338a30f8f8cSSatish Balay } 339a30f8f8cSSatish Balay 34036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34136bd2089SBarry Smith { 34236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 34336bd2089SBarry Smith PetscErrorCode ierr; 34436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 34636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 34836bd2089SBarry Smith const PetscScalar *value = v; 34936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35036bd2089SBarry Smith 35136bd2089SBarry Smith PetscFunctionBegin; 35236bd2089SBarry Smith if (col < row) { 35336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 35436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 35536bd2089SBarry Smith } 35636bd2089SBarry Smith rp = aj + ai[row]; 35736bd2089SBarry Smith ap = aa + bs2*ai[row]; 35836bd2089SBarry Smith rmax = imax[row]; 35936bd2089SBarry Smith nrow = ailen[row]; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith low = 0; 36236bd2089SBarry Smith high = nrow; 36336bd2089SBarry Smith 36436bd2089SBarry Smith while (high-low > 7) { 36536bd2089SBarry Smith t = (low+high)/2; 36636bd2089SBarry Smith if (rp[t] > col) high = t; 36736bd2089SBarry Smith else low = t; 36836bd2089SBarry Smith } 36936bd2089SBarry Smith for (i=low; i<high; i++) { 37036bd2089SBarry Smith if (rp[i] > col) break; 37136bd2089SBarry Smith if (rp[i] == col) { 37236bd2089SBarry Smith bap = ap + bs2*i; 37336bd2089SBarry Smith if (roworiented) { 37436bd2089SBarry Smith if (is == ADD_VALUES) { 37536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37736bd2089SBarry Smith bap[jj] += *value++; 37836bd2089SBarry Smith } 37936bd2089SBarry Smith } 38036bd2089SBarry Smith } else { 38136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 38236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38336bd2089SBarry Smith bap[jj] = *value++; 38436bd2089SBarry Smith } 38536bd2089SBarry Smith } 38636bd2089SBarry Smith } 38736bd2089SBarry Smith } else { 38836bd2089SBarry Smith if (is == ADD_VALUES) { 38936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39136bd2089SBarry Smith *bap++ += *value++; 39236bd2089SBarry Smith } 39336bd2089SBarry Smith } 39436bd2089SBarry Smith } else { 39536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39736bd2089SBarry Smith *bap++ = *value++; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith } 40236bd2089SBarry Smith goto noinsert2; 40336bd2089SBarry Smith } 40436bd2089SBarry Smith } 40536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 40736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40836bd2089SBarry Smith N = nrow++ - 1; high++; 40936bd2089SBarry Smith /* shift up all the later entries in this row */ 410580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 411580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 41236bd2089SBarry Smith rp[i] = col; 41336bd2089SBarry Smith bap = ap + bs2*i; 41436bd2089SBarry Smith if (roworiented) { 41536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 41736bd2089SBarry Smith bap[jj] = *value++; 41836bd2089SBarry Smith } 41936bd2089SBarry Smith } 42036bd2089SBarry Smith } else { 42136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42236bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42336bd2089SBarry Smith *bap++ = *value++; 42436bd2089SBarry Smith } 42536bd2089SBarry Smith } 42636bd2089SBarry Smith } 42736bd2089SBarry Smith noinsert2:; 42836bd2089SBarry Smith ailen[row] = nrow; 42936bd2089SBarry Smith PetscFunctionReturn(0); 43036bd2089SBarry Smith } 43136bd2089SBarry Smith 43236bd2089SBarry Smith /* 43336bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 43436bd2089SBarry Smith */ 43536bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 43636bd2089SBarry Smith { 43736bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 43836bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 43936bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 44036bd2089SBarry Smith PetscErrorCode ierr; 44136bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 44236bd2089SBarry Smith PetscBool roworiented=a->roworiented; 44336bd2089SBarry Smith const PetscScalar *value = v; 44436bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 44536bd2089SBarry Smith 44636bd2089SBarry Smith PetscFunctionBegin; 44736bd2089SBarry Smith rp = aj + ai[row]; 44836bd2089SBarry Smith ap = aa + bs2*ai[row]; 44936bd2089SBarry Smith rmax = imax[row]; 45036bd2089SBarry Smith nrow = ailen[row]; 45136bd2089SBarry Smith low = 0; 45236bd2089SBarry Smith high = nrow; 45336bd2089SBarry Smith value = v; 45436bd2089SBarry Smith while (high-low > 7) { 45536bd2089SBarry Smith t = (low+high)/2; 45636bd2089SBarry Smith if (rp[t] > col) high = t; 45736bd2089SBarry Smith else low = t; 45836bd2089SBarry Smith } 45936bd2089SBarry Smith for (i=low; i<high; i++) { 46036bd2089SBarry Smith if (rp[i] > col) break; 46136bd2089SBarry Smith if (rp[i] == col) { 46236bd2089SBarry Smith bap = ap + bs2*i; 46336bd2089SBarry Smith if (roworiented) { 46436bd2089SBarry Smith if (is == ADD_VALUES) { 46536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46736bd2089SBarry Smith bap[jj] += *value++; 46836bd2089SBarry Smith } 46936bd2089SBarry Smith } 47036bd2089SBarry Smith } else { 47136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 47236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 47336bd2089SBarry Smith bap[jj] = *value++; 47436bd2089SBarry Smith } 47536bd2089SBarry Smith } 47636bd2089SBarry Smith } 47736bd2089SBarry Smith } else { 47836bd2089SBarry Smith if (is == ADD_VALUES) { 47936bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48136bd2089SBarry Smith bap[jj] += value[jj]; 48236bd2089SBarry Smith } 48336bd2089SBarry Smith bap += bs; 48436bd2089SBarry Smith } 48536bd2089SBarry Smith } else { 48636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48836bd2089SBarry Smith bap[jj] = value[jj]; 48936bd2089SBarry Smith } 49036bd2089SBarry Smith bap += bs; 49136bd2089SBarry Smith } 49236bd2089SBarry Smith } 49336bd2089SBarry Smith } 49436bd2089SBarry Smith goto noinsert2; 49536bd2089SBarry Smith } 49636bd2089SBarry Smith } 49736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 49836bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 49936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 50036bd2089SBarry Smith N = nrow++ - 1; high++; 50136bd2089SBarry Smith /* shift up all the later entries in this row */ 502580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 503580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 50436bd2089SBarry Smith rp[i] = col; 50536bd2089SBarry Smith bap = ap + bs2*i; 50636bd2089SBarry Smith if (roworiented) { 50736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50836bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 50936bd2089SBarry Smith bap[jj] = *value++; 51036bd2089SBarry Smith } 51136bd2089SBarry Smith } 51236bd2089SBarry Smith } else { 51336bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 51436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 51536bd2089SBarry Smith *bap++ = *value++; 51636bd2089SBarry Smith } 51736bd2089SBarry Smith } 51836bd2089SBarry Smith } 51936bd2089SBarry Smith noinsert2:; 52036bd2089SBarry Smith ailen[row] = nrow; 52136bd2089SBarry Smith PetscFunctionReturn(0); 52236bd2089SBarry Smith } 52336bd2089SBarry Smith 52436bd2089SBarry Smith /* 52536bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 52636bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 52736bd2089SBarry Smith */ 528dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 529a30f8f8cSSatish Balay { 5300880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 531f15d580aSBarry Smith const MatScalar *value; 532f15d580aSBarry Smith MatScalar *barray =baij->barray; 533ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 534dfbe8321SBarry Smith PetscErrorCode ierr; 535899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 536476417e5SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 537476417e5SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 5380880e062SHong Zhang 539a30f8f8cSSatish Balay PetscFunctionBegin; 5400880e062SHong Zhang if (!barray) { 541785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 5420880e062SHong Zhang baij->barray = barray; 5430880e062SHong Zhang } 5440880e062SHong Zhang 5450880e062SHong Zhang if (roworiented) { 5460880e062SHong Zhang stepval = (n-1)*bs; 5470880e062SHong Zhang } else { 5480880e062SHong Zhang stepval = (m-1)*bs; 5490880e062SHong Zhang } 5500880e062SHong Zhang for (i=0; i<m; i++) { 5510880e062SHong Zhang if (im[i] < 0) continue; 552cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 5530880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5540880e062SHong Zhang row = im[i] - rstart; 5550880e062SHong Zhang for (j=0; j<n; j++) { 556f3f98c53SJed Brown if (im[i] > in[j]) { 557f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 558e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 559f3f98c53SJed Brown } 5600880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5610880e062SHong Zhang if ((roworiented) && (n == 1)) { 562f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 5630880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 564f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 5650880e062SHong Zhang } else { /* Here a copy is required */ 5660880e062SHong Zhang if (roworiented) { 5670880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 5680880e062SHong Zhang } else { 5690880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 5700880e062SHong Zhang } 5710880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5720880e062SHong Zhang for (jj=0; jj<bs; jj++) { 5730880e062SHong Zhang *barray++ = *value++; 5740880e062SHong Zhang } 5750880e062SHong Zhang } 5760880e062SHong Zhang barray -=bs2; 5770880e062SHong Zhang } 5780880e062SHong Zhang 5790880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5800880e062SHong Zhang col = in[j] - cstart; 58136bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 58226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 583cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5840880e062SHong Zhang else { 5850880e062SHong Zhang if (mat->was_assembled) { 5860880e062SHong Zhang if (!baij->colmap) { 587ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5880880e062SHong Zhang } 5890880e062SHong Zhang 5902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5910880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5921302d50aSBarry Smith { PetscInt data; 5930880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 594e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5950880e062SHong Zhang } 5960880e062SHong Zhang #else 597e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5980880e062SHong Zhang #endif 5990880e062SHong Zhang #endif 6000880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 6010880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 6020880e062SHong Zhang col = (col - 1)/bs; 6030880e062SHong Zhang #else 6040880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 6050880e062SHong Zhang #endif 6060880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 607ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 6080880e062SHong Zhang col = in[j]; 6090880e062SHong Zhang } 61026fbe8dcSKarl Rupp } else col = in[j]; 61136bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 6120880e062SHong Zhang } 6130880e062SHong Zhang } 6140880e062SHong Zhang } else { 615bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 6160880e062SHong Zhang if (!baij->donotstash) { 6170880e062SHong Zhang if (roworiented) { 6180880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6190880e062SHong Zhang } else { 6200880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6210880e062SHong Zhang } 6220880e062SHong Zhang } 6230880e062SHong Zhang } 6240880e062SHong Zhang } 6250880e062SHong Zhang PetscFunctionReturn(0); 626a30f8f8cSSatish Balay } 627a30f8f8cSSatish Balay 6281302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 629a30f8f8cSSatish Balay { 630f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 6316849ba73SBarry Smith PetscErrorCode ierr; 632d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 633d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 634a30f8f8cSSatish Balay 635a30f8f8cSSatish Balay PetscFunctionBegin; 636a30f8f8cSSatish Balay for (i=0; i<m; i++) { 637e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 638e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 639a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 640a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 641a30f8f8cSSatish Balay for (j=0; j<n; j++) { 642e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 643e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 644a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 645a30f8f8cSSatish Balay col = idxn[j] - bscstart; 646c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 647a30f8f8cSSatish Balay } else { 648a30f8f8cSSatish Balay if (!baij->colmap) { 649ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 652a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 653a30f8f8cSSatish Balay data--; 654a30f8f8cSSatish Balay #else 655a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 656a30f8f8cSSatish Balay #endif 657a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 658a30f8f8cSSatish Balay else { 659a30f8f8cSSatish Balay col = data + idxn[j]%bs; 660e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 661a30f8f8cSSatish Balay } 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay } 664f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 665a30f8f8cSSatish Balay } 666a30f8f8cSSatish Balay PetscFunctionReturn(0); 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay 669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 670a30f8f8cSSatish Balay { 671a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 672dfbe8321SBarry Smith PetscErrorCode ierr; 673a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay PetscFunctionBegin; 676a30f8f8cSSatish Balay if (baij->size == 1) { 677a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 678a30f8f8cSSatish Balay } else { 679a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 680785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 681a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 682a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 683a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 684a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 685b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6868f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 687a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6880b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6890b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6900b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6910b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 692899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 693d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6940b8dc8d2SHong Zhang MatScalar *v; 6950b8dc8d2SHong Zhang 696dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 697580bdb30SBarry Smith ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr); 6980b8dc8d2SHong Zhang /* Amat */ 6990b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 7000b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7010b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7020b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 7030b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7040b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 7050b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7060b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7070b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7080b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7090b8dc8d2SHong Zhang /* non-diagonal block */ 7100b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 7110b8dc8d2SHong Zhang } 7120b8dc8d2SHong Zhang } 7130b8dc8d2SHong Zhang } 71451f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7150b8dc8d2SHong Zhang } 7160b8dc8d2SHong Zhang /* Bmat */ 7170b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 7180b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7190b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7200b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 7210b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7220b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 7230b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7240b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7250b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7260b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7270b8dc8d2SHong Zhang rsum[grow+row] += vabs; 7280b8dc8d2SHong Zhang } 7290b8dc8d2SHong Zhang } 7300b8dc8d2SHong Zhang } 73151f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7320b8dc8d2SHong Zhang } 733b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7340b8dc8d2SHong Zhang *norm = 0.0; 735d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 7360b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7370b8dc8d2SHong Zhang } 73874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 739f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay PetscFunctionReturn(0); 742a30f8f8cSSatish Balay } 743a30f8f8cSSatish Balay 744dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 745a30f8f8cSSatish Balay { 746a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 7481302d50aSBarry Smith PetscInt nstash,reallocs; 749a30f8f8cSSatish Balay 750a30f8f8cSSatish Balay PetscFunctionBegin; 75126fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 752a30f8f8cSSatish Balay 753d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 7541e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7561e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7581e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 759a30f8f8cSSatish Balay PetscFunctionReturn(0); 760a30f8f8cSSatish Balay } 761a30f8f8cSSatish Balay 762dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 763a30f8f8cSSatish Balay { 764a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 765a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 7666849ba73SBarry Smith PetscErrorCode ierr; 76713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 768e44c0bd4SBarry Smith PetscInt *row,*col; 769ace3abfcSBarry Smith PetscBool other_disassembled; 77013f74950SBarry Smith PetscMPIInt n; 771ace3abfcSBarry Smith PetscBool r1,r2,r3; 772a30f8f8cSSatish Balay MatScalar *val; 773a30f8f8cSSatish Balay 77491c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 775a30f8f8cSSatish Balay PetscFunctionBegin; 7764cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 777a30f8f8cSSatish Balay while (1) { 778a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 779a30f8f8cSSatish Balay if (!flg) break; 780a30f8f8cSSatish Balay 781a30f8f8cSSatish Balay for (i=0; i<n;) { 782a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 78326fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 78426fbe8dcSKarl Rupp if (row[j] != rstart) break; 78526fbe8dcSKarl Rupp } 786a30f8f8cSSatish Balay if (j < n) ncols = j-i; 787a30f8f8cSSatish Balay else ncols = n-i; 788a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7894b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 790a30f8f8cSSatish Balay i = j; 791a30f8f8cSSatish Balay } 792a30f8f8cSSatish Balay } 793a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 794a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 795a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 796a30f8f8cSSatish Balay restore the original flags */ 797a30f8f8cSSatish Balay r1 = baij->roworiented; 798a30f8f8cSSatish Balay r2 = a->roworiented; 79991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 80026fbe8dcSKarl Rupp 801a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 802a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 80326fbe8dcSKarl Rupp 80491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 805a30f8f8cSSatish Balay while (1) { 806a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 807a30f8f8cSSatish Balay if (!flg) break; 808a30f8f8cSSatish Balay 809a30f8f8cSSatish Balay for (i=0; i<n;) { 810a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 81126fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 81226fbe8dcSKarl Rupp if (row[j] != rstart) break; 81326fbe8dcSKarl Rupp } 814a30f8f8cSSatish Balay if (j < n) ncols = j-i; 815a30f8f8cSSatish Balay else ncols = n-i; 8164b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 817a30f8f8cSSatish Balay i = j; 818a30f8f8cSSatish Balay } 819a30f8f8cSSatish Balay } 820a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 82126fbe8dcSKarl Rupp 822a30f8f8cSSatish Balay baij->roworiented = r1; 823a30f8f8cSSatish Balay a->roworiented = r2; 82426fbe8dcSKarl Rupp 82591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay 828a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 829a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 832a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 833a30f8f8cSSatish Balay /* 834a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 835a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 836a30f8f8cSSatish Balay */ 837a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 838b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 839a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 840ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 841a30f8f8cSSatish Balay } 842a30f8f8cSSatish Balay } 843a30f8f8cSSatish Balay 844a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 84540781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 846a30f8f8cSSatish Balay } 847a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 848a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 849a30f8f8cSSatish Balay 85074ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 85126fbe8dcSKarl Rupp 852f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8534f9cfa9eSBarry Smith 8544f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8554f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 856e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 857b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 858e56f5c9eSBarry Smith } 859a30f8f8cSSatish Balay PetscFunctionReturn(0); 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay 862dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 8639804daf3SBarry Smith #include <petscdraw.h> 8646849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 865a30f8f8cSSatish Balay { 866a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 867dfbe8321SBarry Smith PetscErrorCode ierr; 868d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8697da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 870ace3abfcSBarry Smith PetscBool iascii,isdraw; 871b0a32e0cSBarry Smith PetscViewer sviewer; 872f3ef73ceSBarry Smith PetscViewerFormat format; 873a30f8f8cSSatish Balay 874a30f8f8cSSatish Balay PetscFunctionBegin; 875251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 876251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 87732077d6dSBarry Smith if (iascii) { 878b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 879456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 880a30f8f8cSSatish Balay MatInfo info; 881ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr); 882a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8831575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 884b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 885a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 886e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 887a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 888e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 889b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8901575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 89107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 892a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 893a30f8f8cSSatish Balay PetscFunctionReturn(0); 894fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 89577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 896a30f8f8cSSatish Balay PetscFunctionReturn(0); 897c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 898c1490034SHong Zhang PetscFunctionReturn(0); 899a30f8f8cSSatish Balay } 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 902a30f8f8cSSatish Balay if (isdraw) { 903b0a32e0cSBarry Smith PetscDraw draw; 904ace3abfcSBarry Smith PetscBool isnull; 905b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 90645f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 90745f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 908a30f8f8cSSatish Balay } 909a30f8f8cSSatish Balay 9107da1fb6eSBarry Smith { 911a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 912a30f8f8cSSatish Balay Mat A; 91365d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 91465d70643SHong Zhang Mat_SeqBAIJ *Bloc; 915d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 916a30f8f8cSSatish Balay MatScalar *a; 9173e219373SBarry Smith const char *matname; 918a30f8f8cSSatish Balay 919f204ca49SKris Buschelman /* Should this be the same type as mat? */ 920ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 921a30f8f8cSSatish Balay if (!rank) { 922f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 923a30f8f8cSSatish Balay } else { 924f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 925a30f8f8cSSatish Balay } 926f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 9270298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 9282b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 9293bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 930a30f8f8cSSatish Balay 931a30f8f8cSSatish Balay /* copy over the A part */ 93265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 933a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 934785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 937e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 93826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 939a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 940e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 941a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 942dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 94326fbe8dcSKarl Rupp col++; 94426fbe8dcSKarl Rupp a += bs; 945a30f8f8cSSatish Balay } 946a30f8f8cSSatish Balay } 947a30f8f8cSSatish Balay } 948a30f8f8cSSatish Balay /* copy over the B part */ 94965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 95065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 951a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 952e9f7bc9eSHong Zhang 953e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 95426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 955a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 956a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 957a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 958799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 95926fbe8dcSKarl Rupp col++; 96026fbe8dcSKarl Rupp a += bs; 961a30f8f8cSSatish Balay } 962a30f8f8cSSatish Balay } 963a30f8f8cSSatish Balay } 964a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 965a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 966a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 967a30f8f8cSSatish Balay /* 968a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 969b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 970a30f8f8cSSatish Balay */ 9713f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 972ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9733e219373SBarry Smith if (!rank) { 974ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 975383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 976a30f8f8cSSatish Balay } 9773f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9781575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9796bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay PetscFunctionReturn(0); 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay 984618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 985618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 986d1654148SHong Zhang 987dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 988a30f8f8cSSatish Balay { 989dfbe8321SBarry Smith PetscErrorCode ierr; 990ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 991a30f8f8cSSatish Balay 992a30f8f8cSSatish Balay PetscFunctionBegin; 993251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 994251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 995251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 996251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 997d1654148SHong Zhang if (iascii || isdraw || issocket) { 998a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 999d1654148SHong Zhang } else if (isbinary) { 1000d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1001a30f8f8cSSatish Balay } 1002a30f8f8cSSatish Balay PetscFunctionReturn(0); 1003a30f8f8cSSatish Balay } 1004a30f8f8cSSatish Balay 1005dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1006a30f8f8cSSatish Balay { 1007a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1008dfbe8321SBarry Smith PetscErrorCode ierr; 1009a30f8f8cSSatish Balay 1010a30f8f8cSSatish Balay PetscFunctionBegin; 1011a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1012d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1013a30f8f8cSSatish Balay #endif 1014a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1015a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 10166bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 10176bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1018a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 10196bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1020a30f8f8cSSatish Balay #else 102105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1022a30f8f8cSSatish Balay #endif 102305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 10246bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 10256bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 10266bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 10276bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 10286bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 10296bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 10306bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 10316bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 10325755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 103305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 103405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 10356bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 10366bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 10376bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1038ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 103905b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1040a30f8f8cSSatish Balay #endif 104159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 104259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1043899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1044bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1045901853e0SKris Buschelman 1046f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr); 1047bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1048bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1049bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1050d2c30c80SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 10516214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 10526214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 10536214f412SHong Zhang #endif 1054d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1055d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL);CHKERRQ(ierr); 1056d24d4204SJose E. Roman #endif 1057b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr); 1058b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr); 1059a30f8f8cSSatish Balay PetscFunctionReturn(0); 1060a30f8f8cSSatish Balay } 1061a30f8f8cSSatish Balay 1062547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1063547795f9SHong Zhang { 1064547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1065547795f9SHong Zhang PetscErrorCode ierr; 1066eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 10676de40e93SBarry Smith PetscScalar *from; 10686de40e93SBarry Smith const PetscScalar *x; 1069547795f9SHong Zhang 1070547795f9SHong Zhang PetscFunctionBegin; 1071547795f9SHong Zhang /* diagonal part */ 1072547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1073547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1074547795f9SHong Zhang 1075547795f9SHong Zhang /* subdiagonal part */ 1076a3234186SStefano Zampini if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name); 1077547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1078547795f9SHong Zhang 1079547795f9SHong Zhang /* copy x into the vec slvec0 */ 1080547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10816de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1082547795f9SHong Zhang 1083580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1084547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 10856de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1086547795f9SHong Zhang 1087547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1088547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1089547795f9SHong Zhang /* supperdiagonal part */ 1090547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1091547795f9SHong Zhang PetscFunctionReturn(0); 1092547795f9SHong Zhang } 1093547795f9SHong Zhang 1094dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1095a9d4b620SHong Zhang { 1096a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1097dfbe8321SBarry Smith PetscErrorCode ierr; 1098eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1099d9ca1df4SBarry Smith PetscScalar *from; 1100d9ca1df4SBarry Smith const PetscScalar *x; 1101a9d4b620SHong Zhang 1102a9d4b620SHong Zhang PetscFunctionBegin; 1103a9d4b620SHong Zhang /* diagonal part */ 1104a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1105fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1106a9d4b620SHong Zhang 1107a9d4b620SHong Zhang /* subdiagonal part */ 1108a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1109fc165ae2SBarry Smith 1110a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11111ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1112d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1113a9d4b620SHong Zhang 1114580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1115fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1116d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1117fc165ae2SBarry Smith 1118fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1119ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1120a9d4b620SHong Zhang /* supperdiagonal part */ 1121a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1122a9d4b620SHong Zhang PetscFunctionReturn(0); 1123a9d4b620SHong Zhang } 1124a9d4b620SHong Zhang 1125eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz) 1126eb1ec7c1SStefano Zampini { 1127eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1128eb1ec7c1SStefano Zampini PetscErrorCode ierr; 1129eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1130eb1ec7c1SStefano Zampini PetscScalar *from,zero=0.0; 1131eb1ec7c1SStefano Zampini const PetscScalar *x; 1132eb1ec7c1SStefano Zampini 1133eb1ec7c1SStefano Zampini PetscFunctionBegin; 1134eb1ec7c1SStefano Zampini /* diagonal part */ 1135eb1ec7c1SStefano Zampini ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1136eb1ec7c1SStefano Zampini ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1137eb1ec7c1SStefano Zampini 1138eb1ec7c1SStefano Zampini /* subdiagonal part */ 1139a3234186SStefano Zampini if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name); 1140eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1141eb1ec7c1SStefano Zampini 1142eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 1143eb1ec7c1SStefano Zampini ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1144eb1ec7c1SStefano Zampini ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1145eb1ec7c1SStefano Zampini ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1146eb1ec7c1SStefano Zampini ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1147eb1ec7c1SStefano Zampini 1148eb1ec7c1SStefano Zampini ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1149eb1ec7c1SStefano Zampini ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1150eb1ec7c1SStefano Zampini ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1151eb1ec7c1SStefano Zampini 1152eb1ec7c1SStefano Zampini /* supperdiagonal part */ 1153eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1154eb1ec7c1SStefano Zampini PetscFunctionReturn(0); 1155eb1ec7c1SStefano Zampini } 1156eb1ec7c1SStefano Zampini 1157dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1158a30f8f8cSSatish Balay { 1159de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1160dfbe8321SBarry Smith PetscErrorCode ierr; 1161d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1162d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1163d9ca1df4SBarry Smith const PetscScalar *x; 1164a9d4b620SHong Zhang 1165a9d4b620SHong Zhang PetscFunctionBegin; 1166a9d4b620SHong Zhang /* diagonal part */ 1167a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11682dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1169a9d4b620SHong Zhang 1170a9d4b620SHong Zhang /* subdiagonal part */ 1171a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1172a9d4b620SHong Zhang 1173a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11741ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1175d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1176580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 11771ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1178a9d4b620SHong Zhang 1179ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1180d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1181ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1182a9d4b620SHong Zhang 1183a9d4b620SHong Zhang /* supperdiagonal part */ 1184a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1185a9d4b620SHong Zhang PetscFunctionReturn(0); 1186a9d4b620SHong Zhang } 1187a9d4b620SHong Zhang 1188a30f8f8cSSatish Balay /* 1189a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1190a30f8f8cSSatish Balay diagonal block 1191a30f8f8cSSatish Balay */ 1192dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1193a30f8f8cSSatish Balay { 1194a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1195dfbe8321SBarry Smith PetscErrorCode ierr; 1196a30f8f8cSSatish Balay 1197a30f8f8cSSatish Balay PetscFunctionBegin; 1198e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1199a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1200a30f8f8cSSatish Balay PetscFunctionReturn(0); 1201a30f8f8cSSatish Balay } 1202a30f8f8cSSatish Balay 1203f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1204a30f8f8cSSatish Balay { 1205a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1206dfbe8321SBarry Smith PetscErrorCode ierr; 1207a30f8f8cSSatish Balay 1208a30f8f8cSSatish Balay PetscFunctionBegin; 1209f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1210f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay PetscFunctionReturn(0); 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay 12141302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1215a30f8f8cSSatish Balay { 1216d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1217d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1218d0d4cfc2SHong Zhang PetscErrorCode ierr; 1219d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1220d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1221899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1222d0d4cfc2SHong Zhang 1223a30f8f8cSSatish Balay PetscFunctionBegin; 1224e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1225d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1226d0d4cfc2SHong Zhang 1227d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1228d0d4cfc2SHong Zhang /* 1229d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1230d0d4cfc2SHong Zhang */ 1231d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1232d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1233d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1234d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1235d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 123626fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1237d0d4cfc2SHong Zhang } 1238dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1239d0d4cfc2SHong Zhang } 1240d0d4cfc2SHong Zhang 1241e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1242d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1243d0d4cfc2SHong Zhang 1244d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1245f4259b30SLisandro Dalcin if (!v) {pvA = NULL; pvB = NULL;} 1246f4259b30SLisandro Dalcin if (!idx) {pcA = NULL; if (!v) pcB = NULL;} 1247d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1248d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1249d0d4cfc2SHong Zhang nztot = nzA + nzB; 1250d0d4cfc2SHong Zhang 1251d0d4cfc2SHong Zhang cmap = mat->garray; 1252d0d4cfc2SHong Zhang if (v || idx) { 1253d0d4cfc2SHong Zhang if (nztot) { 1254d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1255d0d4cfc2SHong Zhang PetscInt imark = -1; 1256d0d4cfc2SHong Zhang if (v) { 1257d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1258d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1259d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1260d0d4cfc2SHong Zhang else break; 1261d0d4cfc2SHong Zhang } 1262d0d4cfc2SHong Zhang imark = i; 1263d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1264d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1265d0d4cfc2SHong Zhang } 1266d0d4cfc2SHong Zhang if (idx) { 1267d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1268d0d4cfc2SHong Zhang if (imark > -1) { 1269d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1270d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1271d0d4cfc2SHong Zhang } 1272d0d4cfc2SHong Zhang } else { 1273d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 127426fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1275d0d4cfc2SHong Zhang else break; 1276d0d4cfc2SHong Zhang } 1277d0d4cfc2SHong Zhang imark = i; 1278d0d4cfc2SHong Zhang } 1279d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1280d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1281d0d4cfc2SHong Zhang } 1282d0d4cfc2SHong Zhang } else { 1283f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1284f4259b30SLisandro Dalcin if (v) *v = NULL; 1285d0d4cfc2SHong Zhang } 1286d0d4cfc2SHong Zhang } 1287d0d4cfc2SHong Zhang *nz = nztot; 1288d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1289d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1290a30f8f8cSSatish Balay PetscFunctionReturn(0); 1291a30f8f8cSSatish Balay } 1292a30f8f8cSSatish Balay 12931302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1294a30f8f8cSSatish Balay { 1295a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1296a30f8f8cSSatish Balay 1297a30f8f8cSSatish Balay PetscFunctionBegin; 1298e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1299a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1300a30f8f8cSSatish Balay PetscFunctionReturn(0); 1301a30f8f8cSSatish Balay } 1302a30f8f8cSSatish Balay 1303d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1304d0d4cfc2SHong Zhang { 1305d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1306d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1307d0d4cfc2SHong Zhang 1308d0d4cfc2SHong Zhang PetscFunctionBegin; 1309d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1310d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1311d0d4cfc2SHong Zhang } 1312d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1313d0d4cfc2SHong Zhang { 1314d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1315d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1316d0d4cfc2SHong Zhang 1317d0d4cfc2SHong Zhang PetscFunctionBegin; 1318d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1319d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1320d0d4cfc2SHong Zhang } 1321d0d4cfc2SHong Zhang 13222726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 13232726fb6dSPierre Jolivet { 13242726fb6dSPierre Jolivet #if defined(PETSC_USE_COMPLEX) 13252726fb6dSPierre Jolivet PetscErrorCode ierr; 13262726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data; 13272726fb6dSPierre Jolivet 13282726fb6dSPierre Jolivet PetscFunctionBegin; 13292726fb6dSPierre Jolivet ierr = MatConjugate(a->A);CHKERRQ(ierr); 13302726fb6dSPierre Jolivet ierr = MatConjugate(a->B);CHKERRQ(ierr); 13312726fb6dSPierre Jolivet #else 13322726fb6dSPierre Jolivet PetscFunctionBegin; 13332726fb6dSPierre Jolivet #endif 13342726fb6dSPierre Jolivet PetscFunctionReturn(0); 13352726fb6dSPierre Jolivet } 13362726fb6dSPierre Jolivet 133799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 133899cafbc1SBarry Smith { 133999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 134099cafbc1SBarry Smith PetscErrorCode ierr; 134199cafbc1SBarry Smith 134299cafbc1SBarry Smith PetscFunctionBegin; 134399cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 134499cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 134599cafbc1SBarry Smith PetscFunctionReturn(0); 134699cafbc1SBarry Smith } 134799cafbc1SBarry Smith 134899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 134999cafbc1SBarry Smith { 135099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 135199cafbc1SBarry Smith PetscErrorCode ierr; 135299cafbc1SBarry Smith 135399cafbc1SBarry Smith PetscFunctionBegin; 135499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 135599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 135699cafbc1SBarry Smith PetscFunctionReturn(0); 135799cafbc1SBarry Smith } 135899cafbc1SBarry Smith 13597dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 136036032a97SHong Zhang Input: isrow - distributed(parallel), 136136032a97SHong Zhang iscol_local - locally owned (seq) 136236032a97SHong Zhang */ 136336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13648f46ffcaSHong Zhang { 13658f46ffcaSHong Zhang PetscErrorCode ierr; 13668f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13678f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 136836032a97SHong Zhang 136936032a97SHong Zhang PetscFunctionBegin; 13708f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13718f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13721098a8e8SHong Zhang if (sz1 > sz2) { 13731098a8e8SHong Zhang *flg = PETSC_FALSE; 13741098a8e8SHong Zhang PetscFunctionReturn(0); 13751098a8e8SHong Zhang } 13768f46ffcaSHong Zhang 13778f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 13788f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13798f46ffcaSHong Zhang 13808f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 13818f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 1382580bdb30SBarry Smith ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr); 1383580bdb30SBarry Smith ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr); 13848f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 13858f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 13868f46ffcaSHong Zhang 13878f46ffcaSHong Zhang nmatch=0; 13888f46ffcaSHong Zhang k = 0; 13898f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 13908f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 13918f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13928f46ffcaSHong Zhang k = j; nmatch++; 13938f46ffcaSHong Zhang break; 13948f46ffcaSHong Zhang } 13958f46ffcaSHong Zhang } 13968f46ffcaSHong Zhang } 13978f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 13988f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13998f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 14008f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 14011098a8e8SHong Zhang if (nmatch < sz1) { 14021098a8e8SHong Zhang *flg = PETSC_FALSE; 14031098a8e8SHong Zhang } else { 14041098a8e8SHong Zhang *flg = PETSC_TRUE; 14051098a8e8SHong Zhang } 140636032a97SHong Zhang PetscFunctionReturn(0); 14078f46ffcaSHong Zhang } 140836032a97SHong Zhang 14097dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 141036032a97SHong Zhang { 141136032a97SHong Zhang PetscErrorCode ierr; 141236032a97SHong Zhang IS iscol_local; 141336032a97SHong Zhang PetscInt csize; 141436032a97SHong Zhang PetscBool isequal; 141536032a97SHong Zhang 141636032a97SHong Zhang PetscFunctionBegin; 141736032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 141836032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 141936032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 142036032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 142136032a97SHong Zhang } else { 1422068661f9SToby Isaac PetscBool issorted; 1423068661f9SToby Isaac 142436032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 142536032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 1426068661f9SToby Isaac ierr = ISSorted(iscol_local, &issorted);CHKERRQ(ierr); 1427068661f9SToby Isaac if (!isequal || !issorted) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow and be sorted"); 14288f46ffcaSHong Zhang } 14298f46ffcaSHong Zhang 14307dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 14317dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 14328f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 14338f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 14348f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 14358f46ffcaSHong Zhang } 14368f46ffcaSHong Zhang PetscFunctionReturn(0); 14378f46ffcaSHong Zhang } 14388f46ffcaSHong Zhang 1439dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1440a30f8f8cSSatish Balay { 1441a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1442dfbe8321SBarry Smith PetscErrorCode ierr; 1443a30f8f8cSSatish Balay 1444a30f8f8cSSatish Balay PetscFunctionBegin; 1445a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1446a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1447a30f8f8cSSatish Balay PetscFunctionReturn(0); 1448a30f8f8cSSatish Balay } 1449a30f8f8cSSatish Balay 1450dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1451a30f8f8cSSatish Balay { 1452a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1453a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1454dfbe8321SBarry Smith PetscErrorCode ierr; 14553966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 1456a30f8f8cSSatish Balay 1457a30f8f8cSSatish Balay PetscFunctionBegin; 1458d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 145926fbe8dcSKarl Rupp 1460a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 146126fbe8dcSKarl Rupp 1462a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1463a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 146426fbe8dcSKarl Rupp 1465a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 146626fbe8dcSKarl Rupp 1467a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1468a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1469a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1470a30f8f8cSSatish Balay info->nz_used = isend[0]; 1471a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1472a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1473a30f8f8cSSatish Balay info->memory = isend[3]; 1474a30f8f8cSSatish Balay info->mallocs = isend[4]; 1475a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14763966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 147726fbe8dcSKarl Rupp 1478a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1479a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1480a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1481a30f8f8cSSatish Balay info->memory = irecv[3]; 1482a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1483a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14843966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 148526fbe8dcSKarl Rupp 1486a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1487a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1488a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1489a30f8f8cSSatish Balay info->memory = irecv[3]; 1490a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1491f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1492a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1493a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1494a30f8f8cSSatish Balay info->factor_mallocs = 0; 1495a30f8f8cSSatish Balay PetscFunctionReturn(0); 1496a30f8f8cSSatish Balay } 1497a30f8f8cSSatish Balay 1498ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1499a30f8f8cSSatish Balay { 1500a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1501d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1502dfbe8321SBarry Smith PetscErrorCode ierr; 1503a30f8f8cSSatish Balay 1504a30f8f8cSSatish Balay PetscFunctionBegin; 1505e98b92d7SKris Buschelman switch (op) { 1506512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1507e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 150828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1509a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1510c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1511e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 151243674050SBarry Smith MatCheckPreallocated(A,1); 15134e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15144e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1515e98b92d7SKris Buschelman break; 1516e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 151743674050SBarry Smith MatCheckPreallocated(A,1); 15184e0d8c25SBarry Smith a->roworiented = flg; 151926fbe8dcSKarl Rupp 15204e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15214e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1522e98b92d7SKris Buschelman break; 15238c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1524071fcb05SBarry Smith case MAT_SORTED_FULL: 1525290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1526e98b92d7SKris Buschelman break; 1527e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15284e0d8c25SBarry Smith a->donotstash = flg; 1529e98b92d7SKris Buschelman break; 1530e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 15314e0d8c25SBarry Smith a->ht_flag = flg; 1532e98b92d7SKris Buschelman break; 15339a4540c5SBarry Smith case MAT_HERMITIAN: 153443674050SBarry Smith MatCheckPreallocated(A,1); 1535eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15360f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1537eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1538547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1539eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1540eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1541eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1542eb1ec7c1SStefano Zampini A->symmetric = PETSC_FALSE; 1543eb1ec7c1SStefano Zampini } 15440f2140c7SStefano Zampini #endif 1545eeffb40dSHong Zhang break; 1546ffa07934SHong Zhang case MAT_SPD: 154777e54ba9SKris Buschelman case MAT_SYMMETRIC: 154843674050SBarry Smith MatCheckPreallocated(A,1); 1549eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1550eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1551eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1552eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1553eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1554eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1555eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1556eb1ec7c1SStefano Zampini } 1557eb1ec7c1SStefano Zampini #endif 1558eeffb40dSHong Zhang break; 155977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 156043674050SBarry Smith MatCheckPreallocated(A,1); 1561eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1562eeffb40dSHong Zhang break; 15639a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1564e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1565290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 156677e54ba9SKris Buschelman break; 1567d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15684e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1569d0d4cfc2SHong Zhang break; 1570d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15714e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1572d0d4cfc2SHong Zhang break; 1573d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15744e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1575d0d4cfc2SHong Zhang break; 1576e98b92d7SKris Buschelman default: 1577e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1578a30f8f8cSSatish Balay } 1579a30f8f8cSSatish Balay PetscFunctionReturn(0); 1580a30f8f8cSSatish Balay } 1581a30f8f8cSSatish Balay 1582fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1583a30f8f8cSSatish Balay { 1584dfbe8321SBarry Smith PetscErrorCode ierr; 15856e111a19SKarl Rupp 1586a30f8f8cSSatish Balay PetscFunctionBegin; 1587cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1588999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1589cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 1590cf37664fSBarry Smith ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1591fc4dec0aSBarry Smith } 15928115998fSBarry Smith PetscFunctionReturn(0); 1593a30f8f8cSSatish Balay } 1594a30f8f8cSSatish Balay 1595dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1596a30f8f8cSSatish Balay { 1597a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1598a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1599dfbe8321SBarry Smith PetscErrorCode ierr; 16005e90f9d9SHong Zhang PetscInt nv,m,n; 1601ace3abfcSBarry Smith PetscBool flg; 1602a30f8f8cSSatish Balay 1603a30f8f8cSSatish Balay PetscFunctionBegin; 1604a30f8f8cSSatish Balay if (ll != rr) { 1605b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1606e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1607a30f8f8cSSatish Balay } 1608b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1609b3bf805bSHong Zhang 16105e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1611e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1612b3bf805bSHong Zhang 16135e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1614e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 16155e90f9d9SHong Zhang 1616ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16175e90f9d9SHong Zhang 16185e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 16190298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 16205e90f9d9SHong Zhang 16215e90f9d9SHong Zhang /* scale the diagonal part */ 1622a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1623a30f8f8cSSatish Balay 16245e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1625ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16260298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1627a30f8f8cSSatish Balay PetscFunctionReturn(0); 1628a30f8f8cSSatish Balay } 1629a30f8f8cSSatish Balay 1630dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1631a30f8f8cSSatish Balay { 1632f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1633dfbe8321SBarry Smith PetscErrorCode ierr; 1634a30f8f8cSSatish Balay 1635a30f8f8cSSatish Balay PetscFunctionBegin; 1636a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1637a30f8f8cSSatish Balay PetscFunctionReturn(0); 1638a30f8f8cSSatish Balay } 1639a30f8f8cSSatish Balay 16406849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1641a30f8f8cSSatish Balay 1642ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1643a30f8f8cSSatish Balay { 1644a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1645a30f8f8cSSatish Balay Mat a,b,c,d; 1646ace3abfcSBarry Smith PetscBool flg; 1647dfbe8321SBarry Smith PetscErrorCode ierr; 1648a30f8f8cSSatish Balay 1649a30f8f8cSSatish Balay PetscFunctionBegin; 1650a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1651a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1652a30f8f8cSSatish Balay 1653a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1654abc0a331SBarry Smith if (flg) { 1655a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1656a30f8f8cSSatish Balay } 1657b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1658a30f8f8cSSatish Balay PetscFunctionReturn(0); 1659a30f8f8cSSatish Balay } 1660a30f8f8cSSatish Balay 16613c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16623c896bc6SHong Zhang { 16633c896bc6SHong Zhang PetscErrorCode ierr; 16644c7a3774SStefano Zampini PetscBool isbaij; 16653c896bc6SHong Zhang 16663c896bc6SHong Zhang PetscFunctionBegin; 16674c7a3774SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr); 16684c7a3774SStefano Zampini if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 16693c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16703c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1671d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16723c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1673d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16743c896bc6SHong Zhang } else { 16754c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16764c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16774c7a3774SStefano Zampini 16783c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16793c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 16803c896bc6SHong Zhang } 1681cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 16823c896bc6SHong Zhang PetscFunctionReturn(0); 16833c896bc6SHong Zhang } 16843c896bc6SHong Zhang 16854994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1686273d9f13SBarry Smith { 1687dfbe8321SBarry Smith PetscErrorCode ierr; 1688273d9f13SBarry Smith 1689273d9f13SBarry Smith PetscFunctionBegin; 1690f4259b30SLisandro Dalcin ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL);CHKERRQ(ierr); 1691273d9f13SBarry Smith PetscFunctionReturn(0); 1692273d9f13SBarry Smith } 1693a5e6ed63SBarry Smith 16944fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16954fe895cdSHong Zhang { 16964fe895cdSHong Zhang PetscErrorCode ierr; 16974fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16984fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16994fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 17004fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 17014fe895cdSHong Zhang 17024fe895cdSHong Zhang PetscFunctionBegin; 17034fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17044fe895cdSHong Zhang PetscScalar alpha = a; 17054fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 17064fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1707c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 17088b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 17094fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 17104fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1711c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 17128b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1713a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1714ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1715ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1716ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1717ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 17184fe895cdSHong Zhang } else { 17194de5dceeSHong Zhang Mat B; 17204de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 17214de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1722d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 17234de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 17244de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 17254de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 17264de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 17274de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 17284de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 17294de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 17304de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 17314de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 17324de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 17334de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 17344de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 173528be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 17364de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 17374de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1738d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 17394de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 17404fe895cdSHong Zhang } 17414fe895cdSHong Zhang PetscFunctionReturn(0); 17424fe895cdSHong Zhang } 17434fe895cdSHong Zhang 17447dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1745a5e6ed63SBarry Smith { 17466849ba73SBarry Smith PetscErrorCode ierr; 17471302d50aSBarry Smith PetscInt i; 1748afebec48SHong Zhang PetscBool flg; 1749a5e6ed63SBarry Smith 17506849ba73SBarry Smith PetscFunctionBegin; 17517dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1752a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1753a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1754afebec48SHong Zhang if (!flg) { 1755b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1756a5e6ed63SBarry Smith } 17574dcd73b1SHong Zhang } 1758a5e6ed63SBarry Smith PetscFunctionReturn(0); 1759a5e6ed63SBarry Smith } 1760a5e6ed63SBarry Smith 17617d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17627d68702bSBarry Smith { 17637d68702bSBarry Smith PetscErrorCode ierr; 17647d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17656f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17667d68702bSBarry Smith 17677d68702bSBarry Smith PetscFunctionBegin; 17686f33a894SBarry Smith if (!Y->preallocated) { 17697d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 17706f33a894SBarry Smith } else if (!aij->nz) { 1771b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17726f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1773b83222d8SBarry Smith aij->nonew = nonew; 17747d68702bSBarry Smith } 17757d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 17767d68702bSBarry Smith PetscFunctionReturn(0); 17777d68702bSBarry Smith } 17787d68702bSBarry Smith 17793b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 17803b49f96aSBarry Smith { 17813b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 17823b49f96aSBarry Smith PetscErrorCode ierr; 17833b49f96aSBarry Smith 17843b49f96aSBarry Smith PetscFunctionBegin; 17853b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 17863b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 17873b49f96aSBarry Smith if (d) { 17883b49f96aSBarry Smith PetscInt rstart; 17893b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 17903b49f96aSBarry Smith *d += rstart/A->rmap->bs; 17913b49f96aSBarry Smith 17923b49f96aSBarry Smith } 17933b49f96aSBarry Smith PetscFunctionReturn(0); 17943b49f96aSBarry Smith } 17953b49f96aSBarry Smith 1796a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1797a5b7ff6bSBarry Smith { 1798a5b7ff6bSBarry Smith PetscFunctionBegin; 1799a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1800a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1801a5b7ff6bSBarry Smith } 18023b49f96aSBarry Smith 1803a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 18043964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1805a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1806a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1807a9d4b620SHong Zhang MatMult_MPISBAIJ, 180897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1809431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1810431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 1814f4259b30SLisandro Dalcin /* 10*/ NULL, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 181741f059aeSBarry Smith MatSOR_MPISBAIJ, 1818a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 181997304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1820a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1821a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1822a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1823a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 182497304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1825a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1826a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1827a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1828f4259b30SLisandro Dalcin /* 24*/ NULL, 1829f4259b30SLisandro Dalcin NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 18334994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1837f4259b30SLisandro Dalcin NULL, 1838d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18447dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1845d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1846a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18473c896bc6SHong Zhang MatCopy_MPISBAIJ, 1848f4259b30SLisandro Dalcin /* 44*/ NULL, 1849a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18507d68702bSBarry Smith MatShift_MPISBAIJ, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin /* 49*/ NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin /* 54*/ NULL, 1859f4259b30SLisandro Dalcin NULL, 1860a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1861f4259b30SLisandro Dalcin NULL, 1862a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18637dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1864f4259b30SLisandro Dalcin NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin /* 64*/ NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1874f4259b30SLisandro Dalcin NULL, 187528d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin /* 74*/ NULL, 1879f4259b30SLisandro Dalcin NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin /* 79*/ NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 18875bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1888f4259b30SLisandro Dalcin /* 84*/ NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin /* 89*/ NULL, 1894f4259b30SLisandro Dalcin NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin /* 94*/ NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin /* 99*/ NULL, 1904f4259b30SLisandro Dalcin NULL, 1905f4259b30SLisandro Dalcin NULL, 19062726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin /*104*/ NULL, 190999cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1910d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1911d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 191295936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1913f4259b30SLisandro Dalcin /*109*/ NULL, 1914f4259b30SLisandro Dalcin NULL, 1915f4259b30SLisandro Dalcin NULL, 1916f4259b30SLisandro Dalcin NULL, 19173b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1918f4259b30SLisandro Dalcin /*114*/ NULL, 1919f4259b30SLisandro Dalcin NULL, 1920f4259b30SLisandro Dalcin NULL, 1921f4259b30SLisandro Dalcin NULL, 1922f4259b30SLisandro Dalcin NULL, 1923f4259b30SLisandro Dalcin /*119*/ NULL, 1924f4259b30SLisandro Dalcin NULL, 1925f4259b30SLisandro Dalcin NULL, 1926f4259b30SLisandro Dalcin NULL, 1927f4259b30SLisandro Dalcin NULL, 1928f4259b30SLisandro Dalcin /*124*/ NULL, 1929f4259b30SLisandro Dalcin NULL, 1930f4259b30SLisandro Dalcin NULL, 1931f4259b30SLisandro Dalcin NULL, 1932f4259b30SLisandro Dalcin NULL, 1933f4259b30SLisandro Dalcin /*129*/ NULL, 1934f4259b30SLisandro Dalcin NULL, 1935f4259b30SLisandro Dalcin NULL, 1936f4259b30SLisandro Dalcin NULL, 1937f4259b30SLisandro Dalcin NULL, 1938f4259b30SLisandro Dalcin /*134*/ NULL, 1939f4259b30SLisandro Dalcin NULL, 1940f4259b30SLisandro Dalcin NULL, 1941f4259b30SLisandro Dalcin NULL, 1942f4259b30SLisandro Dalcin NULL, 194346533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1944f4259b30SLisandro Dalcin NULL, 1945f4259b30SLisandro Dalcin NULL, 1946f4259b30SLisandro Dalcin NULL, 1947f4259b30SLisandro Dalcin NULL, 194859f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 194999cafbc1SBarry Smith }; 1950a30f8f8cSSatish Balay 1951b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1952a23d5eceSKris Buschelman { 1953476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 1954dfbe8321SBarry Smith PetscErrorCode ierr; 1955535b19f3SBarry Smith PetscInt i,mbs,Mbs; 19565d2a9ed1SStefano Zampini PetscMPIInt size; 1957a23d5eceSKris Buschelman 1958a23d5eceSKris Buschelman PetscFunctionBegin; 195933d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 196026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 196126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1962e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1963476417e5SBarry Smith if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N); 1964476417e5SBarry Smith if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n); 1965899cda47SBarry Smith 1966d0f46423SBarry Smith mbs = B->rmap->n/bs; 1967d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1968c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1969a23d5eceSKris Buschelman 1970d0f46423SBarry Smith B->rmap->bs = bs; 1971a23d5eceSKris Buschelman b->bs2 = bs*bs; 1972a23d5eceSKris Buschelman b->mbs = mbs; 1973a23d5eceSKris Buschelman b->Mbs = Mbs; 1974de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1975de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1976a23d5eceSKris Buschelman 1977a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1978d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1979a23d5eceSKris Buschelman } 1980d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1981d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1982a23d5eceSKris Buschelman 1983d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1984d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1985a23d5eceSKris Buschelman 1986cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1987cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 1988cb7b82ddSBarry Smith #else 1989cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 1990cb7b82ddSBarry Smith #endif 1991cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 1992cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 1993cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 1994cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 1995cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 1996cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 1997cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 1998cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 1999cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 2000cb7b82ddSBarry Smith 2001cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 2002ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr); 2003cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2004cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 20055d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 2006cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2007cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2008cb7b82ddSBarry Smith 2009526dfc15SBarry Smith if (!B->preallocated) { 2010f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2011d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 20129c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 20133bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2014ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2015526dfc15SBarry Smith } 2016a23d5eceSKris Buschelman 2017526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2018526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 201926fbe8dcSKarl Rupp 2020526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2021cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2022cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2023a23d5eceSKris Buschelman PetscFunctionReturn(0); 2024a23d5eceSKris Buschelman } 2025a23d5eceSKris Buschelman 2026dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2027dfb205c3SBarry Smith { 202802106b30SBarry Smith PetscInt m,rstart,cend; 2029f4259b30SLisandro Dalcin PetscInt i,j,d,nz,bd, nz_max=0,*d_nnz=NULL,*o_nnz=NULL; 2030f4259b30SLisandro Dalcin const PetscInt *JJ =NULL; 2031f4259b30SLisandro Dalcin PetscScalar *values=NULL; 2032bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented; 2033dfb205c3SBarry Smith PetscErrorCode ierr; 20343bd0feecSPierre Jolivet PetscBool nooffprocentries; 2035dfb205c3SBarry Smith 2036dfb205c3SBarry Smith PetscFunctionBegin; 2037ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2038dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2039dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2040dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2041dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2042e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2043dfb205c3SBarry Smith m = B->rmap->n/bs; 2044dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2045dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2046dfb205c3SBarry Smith 2047dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2048dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2049dfb205c3SBarry Smith for (i=0; i<m; i++) { 2050dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2051dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 20520cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2053dfb205c3SBarry Smith JJ = jj + ii[i]; 20540cd7f59aSBarry Smith bd = 0; 2055dfb205c3SBarry Smith for (j=0; j<nz; j++) { 20560cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2057dfb205c3SBarry Smith JJ++; 20580cd7f59aSBarry Smith bd++; 2059dfb205c3SBarry Smith } 2060dfb205c3SBarry Smith d = 0; 2061dfb205c3SBarry Smith for (; j<nz; j++) { 2062dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2063dfb205c3SBarry Smith d++; 2064dfb205c3SBarry Smith } 2065dfb205c3SBarry Smith d_nnz[i] = d; 20660cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20670cd7f59aSBarry Smith nz = nz - bd; 20680cd7f59aSBarry Smith nz_max = PetscMax(nz_max,nz); 2069dfb205c3SBarry Smith } 2070dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2071bb80cfbbSStefano Zampini ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 2072dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2073dfb205c3SBarry Smith 2074dfb205c3SBarry Smith values = (PetscScalar*)V; 2075dfb205c3SBarry Smith if (!values) { 2076580bdb30SBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2077dfb205c3SBarry Smith } 2078dfb205c3SBarry Smith for (i=0; i<m; i++) { 2079dfb205c3SBarry Smith PetscInt row = i + rstart; 2080dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2081dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2082bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2083dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2084dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2085bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2086bb80cfbbSStefano Zampini PetscInt j; 20870cd7f59aSBarry Smith for (j=0; j<ncols; j++) { 20880cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 20890cd7f59aSBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 20900cd7f59aSBarry Smith } 20910cd7f59aSBarry Smith } 2092dfb205c3SBarry Smith } 2093dfb205c3SBarry Smith 2094dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 20953bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20963bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 2097dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2098dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20993bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 21003bd0feecSPierre Jolivet 21017827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2102dfb205c3SBarry Smith PetscFunctionReturn(0); 2103dfb205c3SBarry Smith } 2104dfb205c3SBarry Smith 21050bad9183SKris Buschelman /*MC 2106fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2107828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2108828413b8SBarry Smith the matrix is stored. 2109828413b8SBarry Smith 2110828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2111828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 21120bad9183SKris Buschelman 21130bad9183SKris Buschelman Options Database Keys: 21140bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 21150bad9183SKris Buschelman 2116476417e5SBarry Smith Notes: 2117476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2118476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2119476417e5SBarry Smith 21200bad9183SKris Buschelman Level: beginner 21210bad9183SKris Buschelman 2122fd292e60Sprj- .seealso: MatCreateBAIJ(), MATSEQSBAIJ, MatType 21230bad9183SKris Buschelman M*/ 21240bad9183SKris Buschelman 21258cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2126b5df2d14SHong Zhang { 2127b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2128dfbe8321SBarry Smith PetscErrorCode ierr; 212994ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2130b5df2d14SHong Zhang 2131b5df2d14SHong Zhang PetscFunctionBegin; 2132b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2133b0a32e0cSBarry Smith B->data = (void*)b; 2134b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2135b5df2d14SHong Zhang 2136b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2137b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2138b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2139b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 214026fbe8dcSKarl Rupp 2141ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRMPI(ierr); 2142ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRMPI(ierr); 2143b5df2d14SHong Zhang 2144b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2145854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2146b5df2d14SHong Zhang 2147b5df2d14SHong Zhang /* build cache for off array entries formed */ 2148ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 214926fbe8dcSKarl Rupp 2150b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21510298fd71SBarry Smith b->colmap = NULL; 21520298fd71SBarry Smith b->garray = NULL; 2153b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2154b5df2d14SHong Zhang 2155b5df2d14SHong Zhang /* stuff used in block assembly */ 2156f4259b30SLisandro Dalcin b->barray = NULL; 2157b5df2d14SHong Zhang 2158b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2159f4259b30SLisandro Dalcin b->lvec = NULL; 2160f4259b30SLisandro Dalcin b->Mvctx = NULL; 2161f4259b30SLisandro Dalcin b->slvec0 = NULL; 2162f4259b30SLisandro Dalcin b->slvec0b = NULL; 2163f4259b30SLisandro Dalcin b->slvec1 = NULL; 2164f4259b30SLisandro Dalcin b->slvec1a = NULL; 2165f4259b30SLisandro Dalcin b->slvec1b = NULL; 2166f4259b30SLisandro Dalcin b->sMvctx = NULL; 2167b5df2d14SHong Zhang 2168b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2169f4259b30SLisandro Dalcin b->rowindices = NULL; 2170f4259b30SLisandro Dalcin b->rowvalues = NULL; 2171b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2172b5df2d14SHong Zhang 2173b5df2d14SHong Zhang /* hash table stuff */ 2174f4259b30SLisandro Dalcin b->ht = NULL; 2175f4259b30SLisandro Dalcin b->hd = NULL; 2176b5df2d14SHong Zhang b->ht_size = 0; 2177b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2178b5df2d14SHong Zhang b->ht_fact = 0; 2179b5df2d14SHong Zhang b->ht_total_ct = 0; 2180b5df2d14SHong Zhang b->ht_insert_ct = 0; 2181b5df2d14SHong Zhang 21827dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21837a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21847a868f3eSHong Zhang 2185f4259b30SLisandro Dalcin b->in_loc = NULL; 2186f4259b30SLisandro Dalcin b->v_loc = NULL; 218759ffdab8SBarry Smith b->n_loc = 0; 218894ae4db5SBarry Smith 2189bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2190bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2191bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2192bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 21936214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21946214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 21956214f412SHong Zhang #endif 2196d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2197d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK);CHKERRQ(ierr); 2198d24d4204SJose E. Roman #endif 219928d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 220028d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 2201aa5a9175SDahai Guo 220223ce1328SBarry Smith B->symmetric = PETSC_TRUE; 220323ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 220423ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 220523ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 22069899f194SHong Zhang B->symmetric_eternal = PETSC_TRUE; 2207eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 220813647f61SHong Zhang B->hermitian = PETSC_FALSE; 220913647f61SHong Zhang B->hermitian_set = PETSC_FALSE; 2210eb1ec7c1SStefano Zampini #else 2211eb1ec7c1SStefano Zampini B->hermitian = PETSC_TRUE; 2212eb1ec7c1SStefano Zampini B->hermitian_set = PETSC_TRUE; 2213eb1ec7c1SStefano Zampini #endif 221413647f61SHong Zhang 221517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 221694ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 221794ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 221894ae4db5SBarry Smith if (flg) { 221994ae4db5SBarry Smith PetscReal fact = 1.39; 222094ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 222194ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 222294ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 222394ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 222494ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 222594ae4db5SBarry Smith } 222694ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2227b5df2d14SHong Zhang PetscFunctionReturn(0); 2228b5df2d14SHong Zhang } 2229b5df2d14SHong Zhang 2230209238afSKris Buschelman /*MC 2231002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2232209238afSKris Buschelman 2233209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2234209238afSKris Buschelman and MATMPISBAIJ otherwise. 2235209238afSKris Buschelman 2236209238afSKris Buschelman Options Database Keys: 2237209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2238209238afSKris Buschelman 2239209238afSKris Buschelman Level: beginner 2240209238afSKris Buschelman 2241*06946f3aSJose E. Roman .seealso: MatCreateSBAIJ, MATSEQSBAIJ, MATMPISBAIJ 2242209238afSKris Buschelman M*/ 2243209238afSKris Buschelman 2244b5df2d14SHong Zhang /*@C 2245b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2246b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2247b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2248b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2249b5df2d14SHong Zhang 2250b5df2d14SHong Zhang Collective on Mat 2251b5df2d14SHong Zhang 2252b5df2d14SHong Zhang Input Parameters: 22531c4f3114SJed Brown + B - the matrix 2254bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2255bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2256b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2257b5df2d14SHong Zhang submatrix (same for all local rows) 2258b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22596d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22600298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 226195742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2262b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2263b5df2d14SHong Zhang submatrix (same for all local rows). 2264b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2265c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22660298fd71SBarry Smith (possibly different for each block row) or NULL. 2267b5df2d14SHong Zhang 2268b5df2d14SHong Zhang 2269b5df2d14SHong Zhang Options Database Keys: 2270a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2271b5df2d14SHong Zhang block calculations (much slower) 2272a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2273b5df2d14SHong Zhang 2274b5df2d14SHong Zhang Notes: 2275b5df2d14SHong Zhang 2276b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2277b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2278b5df2d14SHong Zhang 227949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 228049a6f317SBarry Smith 2281b5df2d14SHong Zhang Storage Information: 2282b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2283b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2284b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2285b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2286b5df2d14SHong Zhang 2287b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2288b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 22890298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2290b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2291b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2292b5df2d14SHong Zhang 2293aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2294aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2295aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2296aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2297aa95bbe8SBarry Smith 2298b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2299b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2300b5df2d14SHong Zhang 2301b5df2d14SHong Zhang .vb 2302b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2303a4b1a0f6SJed Brown -------------------------- 2304c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2305c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2306c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2307a4b1a0f6SJed Brown -------------------------- 2308b5df2d14SHong Zhang .ve 2309b5df2d14SHong Zhang 2310b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2311b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 23126d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23136d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2314b5df2d14SHong Zhang 23156d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23166d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2317c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2318c2fc9fa9SBarry Smith 2319b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2320b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2321b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2322b5df2d14SHong Zhang matrices. 2323b5df2d14SHong Zhang 2324b5df2d14SHong Zhang Level: intermediate 2325b5df2d14SHong Zhang 2326ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2327b5df2d14SHong Zhang @*/ 23287087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2329b5df2d14SHong Zhang { 23304ac538c5SBarry Smith PetscErrorCode ierr; 2331b5df2d14SHong Zhang 2332b5df2d14SHong Zhang PetscFunctionBegin; 23336ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 23346ba663aaSJed Brown PetscValidType(B,1); 23356ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 23364ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2337b5df2d14SHong Zhang PetscFunctionReturn(0); 2338b5df2d14SHong Zhang } 2339b5df2d14SHong Zhang 2340a30f8f8cSSatish Balay /*@C 234169b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2342a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2343a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2344a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2345a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2346a30f8f8cSSatish Balay 2347d083f849SBarry Smith Collective 2348a30f8f8cSSatish Balay 2349a30f8f8cSSatish Balay Input Parameters: 2350a30f8f8cSSatish Balay + comm - MPI communicator 2351bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2352bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2353a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2354a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2355a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2356a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2357a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2358a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2359a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2360a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2361a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2362a30f8f8cSSatish Balay submatrix (same for all local rows) 2363a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23646d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23650298fd71SBarry Smith (possibly different for each block block row) or NULL. 236695742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 236795742e49SBarry Smith set its value even if it is zero. 2368a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2369a30f8f8cSSatish Balay submatrix (same for all local rows). 2370a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2371a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23720298fd71SBarry Smith each block row) or NULL. 2373a30f8f8cSSatish Balay 2374a30f8f8cSSatish Balay Output Parameter: 2375a30f8f8cSSatish Balay . A - the matrix 2376a30f8f8cSSatish Balay 2377a30f8f8cSSatish Balay Options Database Keys: 2378a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2379a30f8f8cSSatish Balay block calculations (much slower) 2380a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2381a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2382a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2383a30f8f8cSSatish Balay 2384175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2385f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2386175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2387175b88e8SBarry Smith 2388a30f8f8cSSatish Balay Notes: 2389d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23906d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2391d1be2dadSMatthew Knepley 2392a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2393a30f8f8cSSatish Balay (possibly both). 2394a30f8f8cSSatish Balay 2395a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2396a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2397a30f8f8cSSatish Balay 239849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 239949a6f317SBarry Smith 2400a30f8f8cSSatish Balay Storage Information: 2401a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2402a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2403a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2404a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2405a30f8f8cSSatish Balay 2406a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2407a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 24080298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2409a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2410a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2413a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2414a30f8f8cSSatish Balay 2415a30f8f8cSSatish Balay .vb 2416a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2417a4b1a0f6SJed Brown -------------------------- 2418c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2419c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2420c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2421a4b1a0f6SJed Brown -------------------------- 2422a30f8f8cSSatish Balay .ve 2423a30f8f8cSSatish Balay 2424a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2425a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24266d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24276d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2428a30f8f8cSSatish Balay 24296d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 24306d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2431a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2432a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2433a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2434a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2435a30f8f8cSSatish Balay matrices. 2436a30f8f8cSSatish Balay 2437a30f8f8cSSatish Balay Level: intermediate 2438a30f8f8cSSatish Balay 243969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2440a30f8f8cSSatish Balay @*/ 2441a30f8f8cSSatish Balay 244269b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2443a30f8f8cSSatish Balay { 24446849ba73SBarry Smith PetscErrorCode ierr; 24451302d50aSBarry Smith PetscMPIInt size; 2446a30f8f8cSSatish Balay 2447a30f8f8cSSatish Balay PetscFunctionBegin; 2448f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2449f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2450ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2451273d9f13SBarry Smith if (size > 1) { 2452b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2453b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2454273d9f13SBarry Smith } else { 2455273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2456273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2457273d9f13SBarry Smith } 2458a30f8f8cSSatish Balay PetscFunctionReturn(0); 2459a30f8f8cSSatish Balay } 2460a30f8f8cSSatish Balay 2461a30f8f8cSSatish Balay 24626849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2463a30f8f8cSSatish Balay { 2464a30f8f8cSSatish Balay Mat mat; 2465a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2466dfbe8321SBarry Smith PetscErrorCode ierr; 2467d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2468387bc808SHong Zhang PetscScalar *array; 2469a30f8f8cSSatish Balay 2470a30f8f8cSSatish Balay PetscFunctionBegin; 2471f4259b30SLisandro Dalcin *newmat = NULL; 247226fbe8dcSKarl Rupp 2473ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2474d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 24757adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 24761e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 24771e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2478e1b6402fSHong Zhang 2479d5f3da31SBarry Smith mat->factortype = matin->factortype; 2480273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 248182327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24827fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24837fff6886SHong Zhang 2484b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2485a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2486a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2487a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2488a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2489a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2490a30f8f8cSSatish Balay 2491a30f8f8cSSatish Balay a->size = oldmat->size; 2492a30f8f8cSSatish Balay a->rank = oldmat->rank; 2493a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2494a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2495f4259b30SLisandro Dalcin a->rowindices = NULL; 2496f4259b30SLisandro Dalcin a->rowvalues = NULL; 2497a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2498f4259b30SLisandro Dalcin a->barray = NULL; 2499899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2500899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2501899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2502899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2503a30f8f8cSSatish Balay 2504a30f8f8cSSatish Balay /* hash table stuff */ 2505f4259b30SLisandro Dalcin a->ht = NULL; 2506f4259b30SLisandro Dalcin a->hd = NULL; 2507a30f8f8cSSatish Balay a->ht_size = 0; 2508a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2509a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2510a30f8f8cSSatish Balay a->ht_total_ct = 0; 2511a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2512a30f8f8cSSatish Balay 2513580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr); 2514a30f8f8cSSatish Balay if (oldmat->colmap) { 2515a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2516a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2517a30f8f8cSSatish Balay #else 2518854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 25193bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2520580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 2521a30f8f8cSSatish Balay #endif 2522f4259b30SLisandro Dalcin } else a->colmap = NULL; 2523387bc808SHong Zhang 2524a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2525785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 25263bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2527580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 2528f4259b30SLisandro Dalcin } else a->garray = NULL; 2529a30f8f8cSSatish Balay 2530ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2531a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 25323bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2533a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 25343bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 253582327fa8SHong Zhang 253682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 25373bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 253882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 25393bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2540387bc808SHong Zhang 2541387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 25421ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2543778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2544778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 25451ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 25461ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2547778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 25481ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 25493bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 25503bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 25513bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 25523bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 25533bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2554387bc808SHong Zhang 2555387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2556387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2557387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 25583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 255982327fa8SHong Zhang 2560a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2562a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 25633bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2564140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2565a30f8f8cSSatish Balay *newmat = mat; 2566a30f8f8cSSatish Balay PetscFunctionReturn(0); 2567a30f8f8cSSatish Balay } 2568a30f8f8cSSatish Balay 2569618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2570618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2571618cc2edSLisandro Dalcin 2572618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer) 257395936485SShri Abhyankar { 257495936485SShri Abhyankar PetscErrorCode ierr; 25757f489da9SVaclav Hapla PetscBool isbinary; 257695936485SShri Abhyankar 257795936485SShri Abhyankar PetscFunctionBegin; 25787f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 2579618cc2edSLisandro Dalcin if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 2580618cc2edSLisandro Dalcin ierr = MatLoad_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 258195936485SShri Abhyankar PetscFunctionReturn(0); 258295936485SShri Abhyankar } 258395936485SShri Abhyankar 2584dcf5cc72SBarry Smith /*XXXXX@ 2585a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2586a30f8f8cSSatish Balay 2587a30f8f8cSSatish Balay Input Parameters: 2588a30f8f8cSSatish Balay . mat - the matrix 2589a30f8f8cSSatish Balay . fact - factor 2590a30f8f8cSSatish Balay 2591c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2592a30f8f8cSSatish Balay 2593a30f8f8cSSatish Balay Level: advanced 2594a30f8f8cSSatish Balay 2595a30f8f8cSSatish Balay Notes: 2596a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2597a30f8f8cSSatish Balay 2598a30f8f8cSSatish Balay .seealso: MatSetOption() 2599dcf5cc72SBarry Smith @XXXXX*/ 2600dcf5cc72SBarry Smith 260124d5174aSHong Zhang 2602985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 260324d5174aSHong Zhang { 260424d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2605f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2606ca54ac64SHong Zhang PetscReal atmp; 260787828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2608dfbe8321SBarry Smith PetscErrorCode ierr; 26091302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 26101302d50aSBarry Smith PetscMPIInt rank,size; 26111302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 261287828ca2SBarry Smith PetscScalar *va; 26138a1c53f2SBarry Smith MatScalar *ba; 2614f4c0e9e4SHong Zhang MPI_Status stat; 261524d5174aSHong Zhang 261624d5174aSHong Zhang PetscFunctionBegin; 2617e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 26180298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 26191ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2620f4c0e9e4SHong Zhang 2621ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 2622ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRMPI(ierr); 2623f4c0e9e4SHong Zhang 2624d0f46423SBarry Smith bs = A->rmap->bs; 2625f4c0e9e4SHong Zhang mbs = a->mbs; 2626f4c0e9e4SHong Zhang Mbs = a->Mbs; 2627f4c0e9e4SHong Zhang ba = b->a; 2628f4c0e9e4SHong Zhang bi = b->i; 2629f4c0e9e4SHong Zhang bj = b->j; 2630f4c0e9e4SHong Zhang 2631f4c0e9e4SHong Zhang /* find ownerships */ 2632d0f46423SBarry Smith rowners_bs = A->rmap->range; 2633f4c0e9e4SHong Zhang 2634f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2635580bdb30SBarry Smith ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2636f4c0e9e4SHong Zhang 2637f4c0e9e4SHong Zhang /* row_max for B */ 2638b8475685SHong Zhang if (rank != size-1) { 2639f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2640f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2641f4c0e9e4SHong Zhang brow = bs*i; 2642f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2643f4c0e9e4SHong Zhang bcol = bs*(*bj); 2644f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2645ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 264604d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2647f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2648f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2649ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2650ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2651f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2652f4c0e9e4SHong Zhang } 2653f4c0e9e4SHong Zhang } 2654f4c0e9e4SHong Zhang bj++; 2655f4c0e9e4SHong Zhang } 2656f4c0e9e4SHong Zhang } 2657f4c0e9e4SHong Zhang 2658f4c0e9e4SHong Zhang /* send values to its owners */ 2659f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2660f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2661ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 266255b25c41SPierre Jolivet ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 2663ca54ac64SHong Zhang } 2664f4c0e9e4SHong Zhang } 2665f4c0e9e4SHong Zhang 2666f4c0e9e4SHong Zhang /* receive values */ 2667ca54ac64SHong Zhang if (rank) { 2668f4c0e9e4SHong Zhang rvalues = work; 2669ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2670f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2671ffc4695bSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRMPI(ierr); 2672f4c0e9e4SHong Zhang /* process values */ 2673f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2674ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2675f4c0e9e4SHong Zhang } 2676f4c0e9e4SHong Zhang } 2677ca54ac64SHong Zhang } 2678f4c0e9e4SHong Zhang 26791ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2680ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 268124d5174aSHong Zhang PetscFunctionReturn(0); 268224d5174aSHong Zhang } 26832798e883SHong Zhang 268441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 26852798e883SHong Zhang { 26862798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2687dfbe8321SBarry Smith PetscErrorCode ierr; 2688d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 26893649974fSBarry Smith PetscScalar *x,*ptr,*from; 2690ffe4fb16SHong Zhang Vec bb1; 26913649974fSBarry Smith const PetscScalar *b; 2692ffe4fb16SHong Zhang 2693ffe4fb16SHong Zhang PetscFunctionBegin; 2694e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2695e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2696ffe4fb16SHong Zhang 2697a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 269841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2699a2b30743SBarry Smith PetscFunctionReturn(0); 2700a2b30743SBarry Smith } 2701a2b30743SBarry Smith 2702ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2703ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 270441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2705ffe4fb16SHong Zhang its--; 2706ffe4fb16SHong Zhang } 2707ffe4fb16SHong Zhang 2708ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2709ffe4fb16SHong Zhang while (its--) { 2710ffe4fb16SHong Zhang 2711ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2712ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2713ffe4fb16SHong Zhang 2714ffe4fb16SHong Zhang /* copy xx into slvec0a */ 27151ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 27161ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2717580bdb30SBarry Smith ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr); 27181ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2719ffe4fb16SHong Zhang 2720efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2721ffe4fb16SHong Zhang 2722ffe4fb16SHong Zhang /* copy bb into slvec1a */ 27231ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 27243649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2725580bdb30SBarry Smith ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr); 27261ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2727ffe4fb16SHong Zhang 2728ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2729fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2730ffe4fb16SHong Zhang 2731ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27321ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2733a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2734ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2735ffe4fb16SHong Zhang 2736ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2737ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2738ffe4fb16SHong Zhang 2739ffe4fb16SHong Zhang /* local diagonal sweep */ 274041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2741ffe4fb16SHong Zhang } 27426bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2743fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 274441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2745fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 274641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2747fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2748fa22f6d0SBarry Smith Vec xx1; 2749ace3abfcSBarry Smith PetscBool hasop; 275020f1ed55SBarry Smith const PetscScalar *diag; 2751887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 275220f1ed55SBarry Smith PetscInt i,n; 2753fa22f6d0SBarry Smith 2754fa22f6d0SBarry Smith if (!mat->xx1) { 2755fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2756fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2757fa22f6d0SBarry Smith } 2758fa22f6d0SBarry Smith xx1 = mat->xx1; 2759fa22f6d0SBarry Smith bb1 = mat->bb1; 2760fa22f6d0SBarry Smith 276141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2762fa22f6d0SBarry Smith 2763fa22f6d0SBarry Smith if (!mat->diag) { 2764effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27652a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2766fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2767fa22f6d0SBarry Smith } 2768fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2769fa22f6d0SBarry Smith 2770fa22f6d0SBarry Smith if (hasop) { 2771fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2772887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 277320f1ed55SBarry Smith } else { 277420f1ed55SBarry Smith /* 277520f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 277620f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2777887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 277820f1ed55SBarry Smith */ 277920f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27803649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27813649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 278220f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 278320f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2784887ee2caSBarry Smith if (omega == 1.0) { 278526fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 278620f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2787887ee2caSBarry Smith } else { 278826fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2789887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2790887ee2caSBarry Smith } 279120f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27923649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27933649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 279420f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 279520f1ed55SBarry Smith } 2796fa22f6d0SBarry Smith 2797fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2798fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2799fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2800fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2801fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2802580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 2803fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2804fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2805fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2806fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2807effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2808fa22f6d0SBarry Smith 2809fa22f6d0SBarry Smith /* local sweep */ 281041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2811fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2812f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2813ffe4fb16SHong Zhang PetscFunctionReturn(0); 2814ffe4fb16SHong Zhang } 2815ffe4fb16SHong Zhang 2816dfb205c3SBarry Smith /*@ 2817dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2818dfb205c3SBarry Smith CSR format the local rows. 2819dfb205c3SBarry Smith 2820d083f849SBarry Smith Collective 2821dfb205c3SBarry Smith 2822dfb205c3SBarry Smith Input Parameters: 2823dfb205c3SBarry Smith + comm - MPI communicator 2824dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2825dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2826dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2827dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2828dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2829dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2830dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2831483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2832dfb205c3SBarry Smith . j - column indices 2833dfb205c3SBarry Smith - a - matrix values 2834dfb205c3SBarry Smith 2835dfb205c3SBarry Smith Output Parameter: 2836dfb205c3SBarry Smith . mat - the matrix 2837dfb205c3SBarry Smith 2838dfb205c3SBarry Smith Level: intermediate 2839dfb205c3SBarry Smith 2840dfb205c3SBarry Smith Notes: 2841dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2842dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2843dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2844dfb205c3SBarry Smith 2845dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2846dfb205c3SBarry Smith 2847dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 284869b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2849dfb205c3SBarry Smith @*/ 28507087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2851dfb205c3SBarry Smith { 2852dfb205c3SBarry Smith PetscErrorCode ierr; 2853dfb205c3SBarry Smith 2854dfb205c3SBarry Smith 2855dfb205c3SBarry Smith PetscFunctionBegin; 2856f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2857dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2858dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2859dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2860dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2861dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2862dfb205c3SBarry Smith PetscFunctionReturn(0); 2863dfb205c3SBarry Smith } 2864dfb205c3SBarry Smith 2865dfb205c3SBarry Smith 2866dfb205c3SBarry Smith /*@C 2867664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 2868dfb205c3SBarry Smith 2869d083f849SBarry Smith Collective 2870dfb205c3SBarry Smith 2871dfb205c3SBarry Smith Input Parameters: 28721c4f3114SJed Brown + B - the matrix 2873dfb205c3SBarry Smith . bs - the block size 2874dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2875dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2876dfb205c3SBarry Smith - v - optional values in the matrix 2877dfb205c3SBarry Smith 2878664954b6SBarry Smith Level: advanced 2879664954b6SBarry Smith 2880664954b6SBarry Smith Notes: 28810cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28820cd7f59aSBarry Smith and usually the numerical values as well 28830cd7f59aSBarry Smith 288450c5228eSBarry Smith Any entries below the diagonal are ignored 2885dfb205c3SBarry Smith 288669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2887dfb205c3SBarry Smith @*/ 28887087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2889dfb205c3SBarry Smith { 28904ac538c5SBarry Smith PetscErrorCode ierr; 2891dfb205c3SBarry Smith 2892dfb205c3SBarry Smith PetscFunctionBegin; 28934ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2894dfb205c3SBarry Smith PetscFunctionReturn(0); 2895dfb205c3SBarry Smith } 2896dfb205c3SBarry Smith 289710c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 28984dcd73b1SHong Zhang { 28994dcd73b1SHong Zhang PetscErrorCode ierr; 290010c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 290110c56fdeSHong Zhang PetscInt *indx; 290210c56fdeSHong Zhang PetscScalar *values; 2903dfb205c3SBarry Smith 29044dcd73b1SHong Zhang PetscFunctionBegin; 29054dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 290610c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 290710c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 2908de25e9cbSPierre Jolivet PetscInt *dnz,*onz,mbs,Nbs,nbs; 290910c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 2910de25e9cbSPierre Jolivet PetscMPIInt rank,size; 29114dcd73b1SHong Zhang 291210c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 291310c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 291410c56fdeSHong Zhang if (n == PETSC_DECIDE) { 2915da91a574SPierre Jolivet ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N); 291610c56fdeSHong Zhang } 2917da91a574SPierre Jolivet nbs = n/cbs; 29184dcd73b1SHong Zhang 29194dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 2920de25e9cbSPierre Jolivet ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 2921de25e9cbSPierre Jolivet 2922ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 2923ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&size);CHKERRMPI(ierr); 2924de25e9cbSPierre Jolivet if (rank == size-1) { 2925de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 2926de25e9cbSPierre Jolivet if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 2927de25e9cbSPierre Jolivet } 2928de25e9cbSPierre Jolivet 2929de25e9cbSPierre Jolivet rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 2930e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 293110c56fdeSHong Zhang for (i=0; i<mbs; i++) { 29324dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 29334dcd73b1SHong Zhang nnz = nnz/bs; 29344dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 29354dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 29364dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 29374dcd73b1SHong Zhang } 2938e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 29394dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 29404dcd73b1SHong Zhang 29414dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 2942de25e9cbSPierre Jolivet ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 29434dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 2944ce94fc41SPierre Jolivet ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr); 2945ce94fc41SPierre Jolivet ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 29464dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 29474dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 29484dcd73b1SHong Zhang } 29494dcd73b1SHong Zhang 295010c56fdeSHong Zhang /* numeric phase */ 29514dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 295210c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 29534dcd73b1SHong Zhang 2954e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 29554dcd73b1SHong Zhang for (i=0; i<m; i++) { 29564dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29574dcd73b1SHong Zhang Ii = i + rstart; 295810c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 29594dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29604dcd73b1SHong Zhang } 2961e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 296210c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 296310c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29644dcd73b1SHong Zhang PetscFunctionReturn(0); 29654dcd73b1SHong Zhang } 2966