xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 071fcb05f2a6aea8aef2c2090580530b9e9df77e)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10b147fbf3SStefano Zampini 
11b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
12b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
13b147fbf3SStefano Zampini {
14b147fbf3SStefano Zampini   Mat            preallocator;
15b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
16b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
17b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
18b147fbf3SStefano Zampini   PetscErrorCode ierr;
19b147fbf3SStefano Zampini 
20b147fbf3SStefano Zampini   PetscFunctionBegin;
21b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
23b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
24b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
25b147fbf3SStefano Zampini     ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr);
26b147fbf3SStefano Zampini     if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
27b147fbf3SStefano Zampini   }
28b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
29b147fbf3SStefano Zampini   ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr);
30b147fbf3SStefano Zampini   ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr);
31b147fbf3SStefano Zampini   ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr);
32b147fbf3SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr);
33b147fbf3SStefano Zampini   ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr);
34b147fbf3SStefano Zampini   ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr);
35b147fbf3SStefano Zampini   ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr);
36b147fbf3SStefano Zampini   ierr = MatSetUp(preallocator);CHKERRQ(ierr);
37b147fbf3SStefano Zampini   ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr);
38b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
39b147fbf3SStefano Zampini     PetscInt          ncols;
40b147fbf3SStefano Zampini     const PetscInt    *row;
41b147fbf3SStefano Zampini     const PetscScalar *vals;
42b147fbf3SStefano Zampini 
43b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
44b147fbf3SStefano Zampini       ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
45b147fbf3SStefano Zampini       ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
46b147fbf3SStefano Zampini       if (symm && symm[i]) {
47b147fbf3SStefano Zampini         ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
48b147fbf3SStefano Zampini       }
49b147fbf3SStefano Zampini       ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
50b147fbf3SStefano Zampini     }
51b147fbf3SStefano Zampini   }
52b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
53b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
54b147fbf3SStefano Zampini   ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr);
55b147fbf3SStefano Zampini   ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
56b147fbf3SStefano Zampini   PetscFunctionReturn(0);
57b147fbf3SStefano Zampini }
58b147fbf3SStefano Zampini 
59b147fbf3SStefano Zampini static PetscErrorCode MatConvert_MPISBAIJ_XAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
60b147fbf3SStefano Zampini {
61b147fbf3SStefano Zampini   Mat            B;
62b147fbf3SStefano Zampini   PetscErrorCode ierr;
63b147fbf3SStefano Zampini   PetscInt       r;
64b147fbf3SStefano Zampini 
65b147fbf3SStefano Zampini   PetscFunctionBegin;
66b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
67b147fbf3SStefano Zampini     PetscBool symm = PETSC_TRUE;
68b147fbf3SStefano Zampini     PetscInt  bs;
69b147fbf3SStefano Zampini 
70b147fbf3SStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
71b147fbf3SStefano Zampini     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
72b147fbf3SStefano Zampini     ierr = MatSetType(B,newtype);CHKERRQ(ierr);
73b147fbf3SStefano Zampini     ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr);
74b147fbf3SStefano Zampini     ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr);
75b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
76b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
77b147fbf3SStefano Zampini     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
78b147fbf3SStefano Zampini     ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr);
79b147fbf3SStefano Zampini     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
80b147fbf3SStefano Zampini   } else B = *newmat;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
83b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
84b147fbf3SStefano Zampini     PetscInt          ncols;
85b147fbf3SStefano Zampini     const PetscInt    *row;
86b147fbf3SStefano Zampini     const PetscScalar *vals;
87b147fbf3SStefano Zampini 
88b147fbf3SStefano Zampini     ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
89b147fbf3SStefano Zampini     ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
90b147fbf3SStefano Zampini     ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
91b147fbf3SStefano Zampini     ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
92b147fbf3SStefano Zampini   }
93b147fbf3SStefano Zampini   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
94b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
95b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
96b147fbf3SStefano Zampini 
97b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
98b147fbf3SStefano Zampini     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
99b147fbf3SStefano Zampini   } else {
100b147fbf3SStefano Zampini     *newmat = B;
101b147fbf3SStefano Zampini   }
102b147fbf3SStefano Zampini   PetscFunctionReturn(0);
103b147fbf3SStefano Zampini }
104b147fbf3SStefano Zampini 
1057087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
106a30f8f8cSSatish Balay {
107f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
108dfbe8321SBarry Smith   PetscErrorCode ierr;
109a30f8f8cSSatish Balay 
110a30f8f8cSSatish Balay   PetscFunctionBegin;
111a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
112a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
113a30f8f8cSSatish Balay   PetscFunctionReturn(0);
114a30f8f8cSSatish Balay }
115a30f8f8cSSatish Balay 
1167087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
117a30f8f8cSSatish Balay {
118f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
119dfbe8321SBarry Smith   PetscErrorCode ierr;
120a30f8f8cSSatish Balay 
121a30f8f8cSSatish Balay   PetscFunctionBegin;
122a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
123a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
124a30f8f8cSSatish Balay   PetscFunctionReturn(0);
125a30f8f8cSSatish Balay }
126a30f8f8cSSatish Balay 
127d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
128a30f8f8cSSatish Balay   { \
129a30f8f8cSSatish Balay     brow = row/bs;  \
130a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
131a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
132a30f8f8cSSatish Balay     bcol = col/bs; \
133a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
134a30f8f8cSSatish Balay     low  = 0; high = nrow; \
135a30f8f8cSSatish Balay     while (high-low > 3) { \
136a30f8f8cSSatish Balay       t = (low+high)/2; \
137a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
138a30f8f8cSSatish Balay       else              low  = t; \
139a30f8f8cSSatish Balay     } \
140a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
141a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
142a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
143a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
144a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
145a30f8f8cSSatish Balay         else                    *bap  = value;  \
146a30f8f8cSSatish Balay         goto a_noinsert; \
147a30f8f8cSSatish Balay       } \
148a30f8f8cSSatish Balay     } \
149a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
150d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
151fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
152a30f8f8cSSatish Balay     N = nrow++ - 1;  \
153a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
154580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
155580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
156580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
157a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
158a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
159e56f5c9eSBarry Smith     A->nonzerostate++;\
160a30f8f8cSSatish Balay a_noinsert:; \
161a30f8f8cSSatish Balay     ailen[brow] = nrow; \
162a30f8f8cSSatish Balay   }
163e5e170daSBarry Smith 
164d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
165a30f8f8cSSatish Balay   { \
166a30f8f8cSSatish Balay     brow = row/bs;  \
167a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
168a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
169a30f8f8cSSatish Balay     bcol = col/bs; \
170a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
171a30f8f8cSSatish Balay     low  = 0; high = nrow; \
172a30f8f8cSSatish Balay     while (high-low > 3) { \
173a30f8f8cSSatish Balay       t = (low+high)/2; \
174a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
175a30f8f8cSSatish Balay       else              low  = t; \
176a30f8f8cSSatish Balay     } \
177a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
178a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
179a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
180a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
181a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
182a30f8f8cSSatish Balay         else                    *bap  = value;  \
183a30f8f8cSSatish Balay         goto b_noinsert; \
184a30f8f8cSSatish Balay       } \
185a30f8f8cSSatish Balay     } \
186a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
187d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
188fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
189a30f8f8cSSatish Balay     N = nrow++ - 1;  \
190a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
191580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
192580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
193580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \
194a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
195a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
196e56f5c9eSBarry Smith     B->nonzerostate++;\
197a30f8f8cSSatish Balay b_noinsert:; \
198a30f8f8cSSatish Balay     bilen[brow] = nrow; \
199a30f8f8cSSatish Balay   }
200a30f8f8cSSatish Balay 
201a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
202a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
203a30f8f8cSSatish Balay */
204dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
205a30f8f8cSSatish Balay {
206a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
207a30f8f8cSSatish Balay   MatScalar      value;
208ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
209dfbe8321SBarry Smith   PetscErrorCode ierr;
2101302d50aSBarry Smith   PetscInt       i,j,row,col;
211d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
212d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
213d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
214a30f8f8cSSatish Balay 
215a30f8f8cSSatish Balay   /* Some Variables required in the macro */
216a30f8f8cSSatish Balay   Mat          A     = baij->A;
217a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2181302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
219a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
220a30f8f8cSSatish Balay 
221a30f8f8cSSatish Balay   Mat         B     = baij->B;
222a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2231302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
224a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
225a30f8f8cSSatish Balay 
2261302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2271302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
228a30f8f8cSSatish Balay   MatScalar *ap,*bap;
229a30f8f8cSSatish Balay 
230a30f8f8cSSatish Balay   /* for stash */
2310298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2320298fd71SBarry Smith   MatScalar *v_loc = NULL;
233a30f8f8cSSatish Balay 
234a30f8f8cSSatish Balay   PetscFunctionBegin;
235a30f8f8cSSatish Balay   if (!baij->donotstash) {
23659ffdab8SBarry Smith     if (n > baij->n_loc) {
23759ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
23859ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
239785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
240785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
24126fbe8dcSKarl Rupp 
24259ffdab8SBarry Smith       baij->n_loc = n;
24359ffdab8SBarry Smith     }
24459ffdab8SBarry Smith     in_loc = baij->in_loc;
24559ffdab8SBarry Smith     v_loc  = baij->v_loc;
246a30f8f8cSSatish Balay   }
247a30f8f8cSSatish Balay 
248a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
249a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2502515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
251e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
252a30f8f8cSSatish Balay #endif
253a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
254a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
255a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
25601b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
25701b2bd88SHong Zhang           if (a->ignore_ltriangular) {
25801b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
25926fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
26001b2bd88SHong Zhang         }
261a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
262a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
263a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
264a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
265db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
266db4deed7SKarl Rupp           else             value = v[i+j*m];
267d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
268a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
269a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2702515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
271cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
272a30f8f8cSSatish Balay #endif
273a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
274a30f8f8cSSatish Balay           if (mat->was_assembled) {
275a30f8f8cSSatish Balay             if (!baij->colmap) {
276ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
277a30f8f8cSSatish Balay             }
278a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
279a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28071730473SSatish Balay             col  = col - 1;
281a30f8f8cSSatish Balay #else
28271730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
283a30f8f8cSSatish Balay #endif
284a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
285ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
286a30f8f8cSSatish Balay               col  =  in[j];
287a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
288a30f8f8cSSatish Balay               B    = baij->B;
289a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
290a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
291a30f8f8cSSatish Balay               ba   = b->a;
29271730473SSatish Balay             } else col += in[j]%bs;
293a30f8f8cSSatish Balay           } else col = in[j];
294db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
295db4deed7SKarl Rupp           else             value = v[i+j*m];
296d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
297a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
298a30f8f8cSSatish Balay         }
299a30f8f8cSSatish Balay       }
300a30f8f8cSSatish Balay     } else {  /* off processor entry */
3014cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
302a30f8f8cSSatish Balay       if (!baij->donotstash) {
3035080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
304a30f8f8cSSatish Balay         n_loc          = 0;
305a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
306f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
307a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
308a30f8f8cSSatish Balay           if (roworiented) {
309a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
310a30f8f8cSSatish Balay           } else {
311a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
312a30f8f8cSSatish Balay           }
313a30f8f8cSSatish Balay           n_loc++;
314a30f8f8cSSatish Balay         }
315b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
316a30f8f8cSSatish Balay       }
317a30f8f8cSSatish Balay     }
318a30f8f8cSSatish Balay   }
319a30f8f8cSSatish Balay   PetscFunctionReturn(0);
320a30f8f8cSSatish Balay }
321a30f8f8cSSatish Balay 
32236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
32336bd2089SBarry Smith {
32436bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
32536bd2089SBarry Smith   PetscErrorCode    ierr;
32636bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
32736bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
32836bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
32936bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
33036bd2089SBarry Smith   const PetscScalar *value     = v;
33136bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
33236bd2089SBarry Smith 
33336bd2089SBarry Smith   PetscFunctionBegin;
33436bd2089SBarry Smith   if (col < row) {
33536bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
33636bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33736bd2089SBarry Smith   }
33836bd2089SBarry Smith   rp   = aj + ai[row];
33936bd2089SBarry Smith   ap   = aa + bs2*ai[row];
34036bd2089SBarry Smith   rmax = imax[row];
34136bd2089SBarry Smith   nrow = ailen[row];
34236bd2089SBarry Smith   value = v;
34336bd2089SBarry Smith   low   = 0;
34436bd2089SBarry Smith   high  = nrow;
34536bd2089SBarry Smith 
34636bd2089SBarry Smith   while (high-low > 7) {
34736bd2089SBarry Smith     t = (low+high)/2;
34836bd2089SBarry Smith     if (rp[t] > col) high = t;
34936bd2089SBarry Smith     else             low  = t;
35036bd2089SBarry Smith   }
35136bd2089SBarry Smith   for (i=low; i<high; i++) {
35236bd2089SBarry Smith     if (rp[i] > col) break;
35336bd2089SBarry Smith     if (rp[i] == col) {
35436bd2089SBarry Smith       bap = ap +  bs2*i;
35536bd2089SBarry Smith       if (roworiented) {
35636bd2089SBarry Smith         if (is == ADD_VALUES) {
35736bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
35836bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
35936bd2089SBarry Smith               bap[jj] += *value++;
36036bd2089SBarry Smith             }
36136bd2089SBarry Smith           }
36236bd2089SBarry Smith         } else {
36336bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
36436bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
36536bd2089SBarry Smith               bap[jj] = *value++;
36636bd2089SBarry Smith             }
36736bd2089SBarry Smith           }
36836bd2089SBarry Smith         }
36936bd2089SBarry Smith       } else {
37036bd2089SBarry Smith         if (is == ADD_VALUES) {
37136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37236bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
37336bd2089SBarry Smith               *bap++ += *value++;
37436bd2089SBarry Smith             }
37536bd2089SBarry Smith           }
37636bd2089SBarry Smith         } else {
37736bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37836bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
37936bd2089SBarry Smith               *bap++  = *value++;
38036bd2089SBarry Smith             }
38136bd2089SBarry Smith           }
38236bd2089SBarry Smith         }
38336bd2089SBarry Smith       }
38436bd2089SBarry Smith       goto noinsert2;
38536bd2089SBarry Smith     }
38636bd2089SBarry Smith   }
38736bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
38836bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
38936bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
39036bd2089SBarry Smith   N = nrow++ - 1; high++;
39136bd2089SBarry Smith   /* shift up all the later entries in this row */
392580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
393580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
39436bd2089SBarry Smith   rp[i] = col;
39536bd2089SBarry Smith   bap   = ap +  bs2*i;
39636bd2089SBarry Smith   if (roworiented) {
39736bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
39836bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
39936bd2089SBarry Smith         bap[jj] = *value++;
40036bd2089SBarry Smith       }
40136bd2089SBarry Smith     }
40236bd2089SBarry Smith   } else {
40336bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
40436bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
40536bd2089SBarry Smith         *bap++ = *value++;
40636bd2089SBarry Smith       }
40736bd2089SBarry Smith     }
40836bd2089SBarry Smith   }
40936bd2089SBarry Smith   noinsert2:;
41036bd2089SBarry Smith   ailen[row] = nrow;
41136bd2089SBarry Smith   PetscFunctionReturn(0);
41236bd2089SBarry Smith }
41336bd2089SBarry Smith 
41436bd2089SBarry Smith /*
41536bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
41636bd2089SBarry Smith */
41736bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
41836bd2089SBarry Smith {
41936bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
42036bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
42136bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
42236bd2089SBarry Smith   PetscErrorCode    ierr;
42336bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
42436bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
42536bd2089SBarry Smith   const PetscScalar *value     = v;
42636bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
42736bd2089SBarry Smith 
42836bd2089SBarry Smith   PetscFunctionBegin;
42936bd2089SBarry Smith   rp   = aj + ai[row];
43036bd2089SBarry Smith   ap   = aa + bs2*ai[row];
43136bd2089SBarry Smith   rmax = imax[row];
43236bd2089SBarry Smith   nrow = ailen[row];
43336bd2089SBarry Smith   low  = 0;
43436bd2089SBarry Smith   high = nrow;
43536bd2089SBarry Smith   value = v;
43636bd2089SBarry Smith   while (high-low > 7) {
43736bd2089SBarry Smith     t = (low+high)/2;
43836bd2089SBarry Smith     if (rp[t] > col) high = t;
43936bd2089SBarry Smith     else             low  = t;
44036bd2089SBarry Smith   }
44136bd2089SBarry Smith   for (i=low; i<high; i++) {
44236bd2089SBarry Smith     if (rp[i] > col) break;
44336bd2089SBarry Smith     if (rp[i] == col) {
44436bd2089SBarry Smith       bap = ap +  bs2*i;
44536bd2089SBarry Smith       if (roworiented) {
44636bd2089SBarry Smith         if (is == ADD_VALUES) {
44736bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
44836bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
44936bd2089SBarry Smith               bap[jj] += *value++;
45036bd2089SBarry Smith             }
45136bd2089SBarry Smith           }
45236bd2089SBarry Smith         } else {
45336bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
45436bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
45536bd2089SBarry Smith               bap[jj] = *value++;
45636bd2089SBarry Smith             }
45736bd2089SBarry Smith           }
45836bd2089SBarry Smith         }
45936bd2089SBarry Smith       } else {
46036bd2089SBarry Smith         if (is == ADD_VALUES) {
46136bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
46236bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
46336bd2089SBarry Smith               bap[jj] += value[jj];
46436bd2089SBarry Smith             }
46536bd2089SBarry Smith             bap += bs;
46636bd2089SBarry Smith           }
46736bd2089SBarry Smith         } else {
46836bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
46936bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
47036bd2089SBarry Smith               bap[jj]  = value[jj];
47136bd2089SBarry Smith             }
47236bd2089SBarry Smith             bap += bs;
47336bd2089SBarry Smith           }
47436bd2089SBarry Smith         }
47536bd2089SBarry Smith       }
47636bd2089SBarry Smith       goto noinsert2;
47736bd2089SBarry Smith     }
47836bd2089SBarry Smith   }
47936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
48036bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
48136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
48236bd2089SBarry Smith   N = nrow++ - 1; high++;
48336bd2089SBarry Smith   /* shift up all the later entries in this row */
484580bdb30SBarry Smith   ierr  = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
485580bdb30SBarry Smith   ierr  = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
48636bd2089SBarry Smith   rp[i] = col;
48736bd2089SBarry Smith   bap   = ap +  bs2*i;
48836bd2089SBarry Smith   if (roworiented) {
48936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
49036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
49136bd2089SBarry Smith         bap[jj] = *value++;
49236bd2089SBarry Smith       }
49336bd2089SBarry Smith     }
49436bd2089SBarry Smith   } else {
49536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
49636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
49736bd2089SBarry Smith         *bap++ = *value++;
49836bd2089SBarry Smith       }
49936bd2089SBarry Smith     }
50036bd2089SBarry Smith   }
50136bd2089SBarry Smith   noinsert2:;
50236bd2089SBarry Smith   ailen[row] = nrow;
50336bd2089SBarry Smith   PetscFunctionReturn(0);
50436bd2089SBarry Smith }
50536bd2089SBarry Smith 
50636bd2089SBarry Smith /*
50736bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
50836bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
50936bd2089SBarry Smith */
510dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
511a30f8f8cSSatish Balay {
5120880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
513f15d580aSBarry Smith   const MatScalar *value;
514f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
515ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
516dfbe8321SBarry Smith   PetscErrorCode  ierr;
517899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
518899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
519d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5200880e062SHong Zhang 
521a30f8f8cSSatish Balay   PetscFunctionBegin;
5220880e062SHong Zhang   if (!barray) {
523785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
5240880e062SHong Zhang     baij->barray = barray;
5250880e062SHong Zhang   }
5260880e062SHong Zhang 
5270880e062SHong Zhang   if (roworiented) {
5280880e062SHong Zhang     stepval = (n-1)*bs;
5290880e062SHong Zhang   } else {
5300880e062SHong Zhang     stepval = (m-1)*bs;
5310880e062SHong Zhang   }
5320880e062SHong Zhang   for (i=0; i<m; i++) {
5330880e062SHong Zhang     if (im[i] < 0) continue;
5342515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
535bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
5360880e062SHong Zhang #endif
5370880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5380880e062SHong Zhang       row = im[i] - rstart;
5390880e062SHong Zhang       for (j=0; j<n; j++) {
540f3f98c53SJed Brown         if (im[i] > in[j]) {
541f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
542e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
543f3f98c53SJed Brown         }
5440880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5450880e062SHong Zhang         if ((roworiented) && (n == 1)) {
546f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5470880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
548f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5490880e062SHong Zhang         } else { /* Here a copy is required */
5500880e062SHong Zhang           if (roworiented) {
5510880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5520880e062SHong Zhang           } else {
5530880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5540880e062SHong Zhang           }
5550880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5560880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5570880e062SHong Zhang               *barray++ = *value++;
5580880e062SHong Zhang             }
5590880e062SHong Zhang           }
5600880e062SHong Zhang           barray -=bs2;
5610880e062SHong Zhang         }
5620880e062SHong Zhang 
5630880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5640880e062SHong Zhang           col  = in[j] - cstart;
56536bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
56626fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
5672515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
568bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5690880e062SHong Zhang #endif
5700880e062SHong Zhang         else {
5710880e062SHong Zhang           if (mat->was_assembled) {
5720880e062SHong Zhang             if (!baij->colmap) {
573ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5740880e062SHong Zhang             }
5750880e062SHong Zhang 
5762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5770880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5781302d50aSBarry Smith             { PetscInt data;
5790880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
580e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5810880e062SHong Zhang             }
5820880e062SHong Zhang #else
583e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5840880e062SHong Zhang #endif
5850880e062SHong Zhang #endif
5860880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5870880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5880880e062SHong Zhang             col  = (col - 1)/bs;
5890880e062SHong Zhang #else
5900880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5910880e062SHong Zhang #endif
5920880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
593ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5940880e062SHong Zhang               col  = in[j];
5950880e062SHong Zhang             }
59626fbe8dcSKarl Rupp           } else col = in[j];
59736bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
5980880e062SHong Zhang         }
5990880e062SHong Zhang       }
6000880e062SHong Zhang     } else {
601bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6020880e062SHong Zhang       if (!baij->donotstash) {
6030880e062SHong Zhang         if (roworiented) {
6040880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6050880e062SHong Zhang         } else {
6060880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6070880e062SHong Zhang         }
6080880e062SHong Zhang       }
6090880e062SHong Zhang     }
6100880e062SHong Zhang   }
6110880e062SHong Zhang   PetscFunctionReturn(0);
612a30f8f8cSSatish Balay }
613a30f8f8cSSatish Balay 
6141302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
615a30f8f8cSSatish Balay {
616f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
6176849ba73SBarry Smith   PetscErrorCode ierr;
618d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
619d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
620a30f8f8cSSatish Balay 
621a30f8f8cSSatish Balay   PetscFunctionBegin;
622a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
623e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
624e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
625a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
626a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
627a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
628e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
629e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
630a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
631a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
632c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
633a30f8f8cSSatish Balay         } else {
634a30f8f8cSSatish Balay           if (!baij->colmap) {
635ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
636a30f8f8cSSatish Balay           }
637a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
638a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
639a30f8f8cSSatish Balay           data--;
640a30f8f8cSSatish Balay #else
641a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
642a30f8f8cSSatish Balay #endif
643a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
644a30f8f8cSSatish Balay           else {
645a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
646e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
647a30f8f8cSSatish Balay           }
648a30f8f8cSSatish Balay         }
649a30f8f8cSSatish Balay       }
650f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
651a30f8f8cSSatish Balay   }
652a30f8f8cSSatish Balay   PetscFunctionReturn(0);
653a30f8f8cSSatish Balay }
654a30f8f8cSSatish Balay 
655dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
656a30f8f8cSSatish Balay {
657a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
658dfbe8321SBarry Smith   PetscErrorCode ierr;
659a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
660a30f8f8cSSatish Balay 
661a30f8f8cSSatish Balay   PetscFunctionBegin;
662a30f8f8cSSatish Balay   if (baij->size == 1) {
663a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
664a30f8f8cSSatish Balay   } else {
665a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
666785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
667a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
668a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
669a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
670a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
671b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6728f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
673a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6740b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6750b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6760b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6770b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
678899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
679d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6800b8dc8d2SHong Zhang       MatScalar    *v;
6810b8dc8d2SHong Zhang 
682dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
683580bdb30SBarry Smith       ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr);
6840b8dc8d2SHong Zhang       /* Amat */
6850b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6860b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6870b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6880b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6890b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6900b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6910b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6920b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6930b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6940b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6950b8dc8d2SHong Zhang               /* non-diagonal block */
6960b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
6970b8dc8d2SHong Zhang             }
6980b8dc8d2SHong Zhang           }
6990b8dc8d2SHong Zhang         }
70051f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7010b8dc8d2SHong Zhang       }
7020b8dc8d2SHong Zhang       /* Bmat */
7030b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7040b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7050b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7060b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7070b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7080b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7090b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7100b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7110b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7120b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7130b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7140b8dc8d2SHong Zhang             }
7150b8dc8d2SHong Zhang           }
7160b8dc8d2SHong Zhang         }
71751f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7180b8dc8d2SHong Zhang       }
719b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7200b8dc8d2SHong Zhang       *norm = 0.0;
721d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7220b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7230b8dc8d2SHong Zhang       }
72474ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
725f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
726a30f8f8cSSatish Balay   }
727a30f8f8cSSatish Balay   PetscFunctionReturn(0);
728a30f8f8cSSatish Balay }
729a30f8f8cSSatish Balay 
730dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
731a30f8f8cSSatish Balay {
732a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
733dfbe8321SBarry Smith   PetscErrorCode ierr;
7341302d50aSBarry Smith   PetscInt       nstash,reallocs;
735a30f8f8cSSatish Balay 
736a30f8f8cSSatish Balay   PetscFunctionBegin;
73726fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
738a30f8f8cSSatish Balay 
739d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
7401e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
741a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7421e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
743a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7441e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
745a30f8f8cSSatish Balay   PetscFunctionReturn(0);
746a30f8f8cSSatish Balay }
747a30f8f8cSSatish Balay 
748dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
749a30f8f8cSSatish Balay {
750a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
751a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
7526849ba73SBarry Smith   PetscErrorCode ierr;
75313f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
754e44c0bd4SBarry Smith   PetscInt       *row,*col;
755ace3abfcSBarry Smith   PetscBool      other_disassembled;
75613f74950SBarry Smith   PetscMPIInt    n;
757ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
758a30f8f8cSSatish Balay   MatScalar      *val;
759a30f8f8cSSatish Balay 
76091c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
761a30f8f8cSSatish Balay   PetscFunctionBegin;
7624cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
763a30f8f8cSSatish Balay     while (1) {
764a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
765a30f8f8cSSatish Balay       if (!flg) break;
766a30f8f8cSSatish Balay 
767a30f8f8cSSatish Balay       for (i=0; i<n;) {
768a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
76926fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
77026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
77126fbe8dcSKarl Rupp         }
772a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
773a30f8f8cSSatish Balay         else       ncols = n-i;
774a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7754b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
776a30f8f8cSSatish Balay         i    = j;
777a30f8f8cSSatish Balay       }
778a30f8f8cSSatish Balay     }
779a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
780a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
781a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
782a30f8f8cSSatish Balay        restore the original flags */
783a30f8f8cSSatish Balay     r1 = baij->roworiented;
784a30f8f8cSSatish Balay     r2 = a->roworiented;
78591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
78626fbe8dcSKarl Rupp 
787a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
788a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
78926fbe8dcSKarl Rupp 
79091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
791a30f8f8cSSatish Balay     while (1) {
792a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
793a30f8f8cSSatish Balay       if (!flg) break;
794a30f8f8cSSatish Balay 
795a30f8f8cSSatish Balay       for (i=0; i<n;) {
796a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
79726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
79826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
79926fbe8dcSKarl Rupp         }
800a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
801a30f8f8cSSatish Balay         else       ncols = n-i;
8024b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
803a30f8f8cSSatish Balay         i    = j;
804a30f8f8cSSatish Balay       }
805a30f8f8cSSatish Balay     }
806a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
80726fbe8dcSKarl Rupp 
808a30f8f8cSSatish Balay     baij->roworiented = r1;
809a30f8f8cSSatish Balay     a->roworiented    = r2;
81026fbe8dcSKarl Rupp 
81191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
812a30f8f8cSSatish Balay   }
813a30f8f8cSSatish Balay 
814a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
815a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
816a30f8f8cSSatish Balay 
817a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
818a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
819a30f8f8cSSatish Balay   /*
820a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
821a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
822a30f8f8cSSatish Balay   */
823a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
824b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
825a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
826ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
827a30f8f8cSSatish Balay     }
828a30f8f8cSSatish Balay   }
829a30f8f8cSSatish Balay 
830a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
83140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
832a30f8f8cSSatish Balay   }
833a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
834a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
835a30f8f8cSSatish Balay 
83674ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
83726fbe8dcSKarl Rupp 
838a30f8f8cSSatish Balay   baij->rowvalues = 0;
8394f9cfa9eSBarry Smith 
8404f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8414f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
842e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
843b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
844e56f5c9eSBarry Smith   }
845a30f8f8cSSatish Balay   PetscFunctionReturn(0);
846a30f8f8cSSatish Balay }
847a30f8f8cSSatish Balay 
848dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8499804daf3SBarry Smith #include <petscdraw.h>
8506849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
851a30f8f8cSSatish Balay {
852a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
853dfbe8321SBarry Smith   PetscErrorCode    ierr;
854d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8557da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
856ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
857b0a32e0cSBarry Smith   PetscViewer       sviewer;
858f3ef73ceSBarry Smith   PetscViewerFormat format;
859a30f8f8cSSatish Balay 
860a30f8f8cSSatish Balay   PetscFunctionBegin;
861251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
862251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
86332077d6dSBarry Smith   if (iascii) {
864b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
865456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
866a30f8f8cSSatish Balay       MatInfo info;
867ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
868a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8691575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
870b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
871a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
872e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
873a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
874e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
875b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8761575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
87707d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
878a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
879a30f8f8cSSatish Balay       PetscFunctionReturn(0);
880fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
88177431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
882a30f8f8cSSatish Balay       PetscFunctionReturn(0);
883c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
884c1490034SHong Zhang       PetscFunctionReturn(0);
885a30f8f8cSSatish Balay     }
886a30f8f8cSSatish Balay   }
887a30f8f8cSSatish Balay 
888a30f8f8cSSatish Balay   if (isdraw) {
889b0a32e0cSBarry Smith     PetscDraw draw;
890ace3abfcSBarry Smith     PetscBool isnull;
891b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
89245f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
89345f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
894a30f8f8cSSatish Balay   }
895a30f8f8cSSatish Balay 
8967da1fb6eSBarry Smith   {
897a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
898a30f8f8cSSatish Balay     Mat          A;
89965d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
90065d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
901d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
902a30f8f8cSSatish Balay     MatScalar    *a;
9033e219373SBarry Smith     const char   *matname;
904a30f8f8cSSatish Balay 
905f204ca49SKris Buschelman     /* Should this be the same type as mat? */
906ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
907a30f8f8cSSatish Balay     if (!rank) {
908f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
909a30f8f8cSSatish Balay     } else {
910f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
911a30f8f8cSSatish Balay     }
912f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
9130298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
9142b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
9153bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
916a30f8f8cSSatish Balay 
917a30f8f8cSSatish Balay     /* copy over the A part */
91865d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
919a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
920785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
921a30f8f8cSSatish Balay 
922a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
923e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
92426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
925a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
926e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
927a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
928dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
92926fbe8dcSKarl Rupp           col++;
93026fbe8dcSKarl Rupp           a += bs;
931a30f8f8cSSatish Balay         }
932a30f8f8cSSatish Balay       }
933a30f8f8cSSatish Balay     }
934a30f8f8cSSatish Balay     /* copy over the B part */
93565d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
93665d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
937a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
938e9f7bc9eSHong Zhang 
939e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
94026fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
941a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
942a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
943a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
944799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
94526fbe8dcSKarl Rupp           col++;
94626fbe8dcSKarl Rupp           a += bs;
947a30f8f8cSSatish Balay         }
948a30f8f8cSSatish Balay       }
949a30f8f8cSSatish Balay     }
950a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
951a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
952a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
953a30f8f8cSSatish Balay     /*
954a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
955b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
956a30f8f8cSSatish Balay     */
9573f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
958ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9593e219373SBarry Smith     if (!rank) {
960ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
961383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
962a30f8f8cSSatish Balay     }
9633f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9641575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9656bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
966a30f8f8cSSatish Balay   }
967a30f8f8cSSatish Balay   PetscFunctionReturn(0);
968a30f8f8cSSatish Balay }
969a30f8f8cSSatish Balay 
970d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer)
971d1654148SHong Zhang {
972d1654148SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)mat->data;
973d1654148SHong Zhang   Mat_SeqSBAIJ   *A = (Mat_SeqSBAIJ*)a->A->data;
974d1654148SHong Zhang   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
975d1654148SHong Zhang   PetscErrorCode ierr;
976d1654148SHong Zhang   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
977d1654148SHong Zhang   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
978d1654148SHong Zhang   int            fd;
979d1654148SHong Zhang   PetscScalar    *column_values;
980d1654148SHong Zhang   FILE           *file;
981d1654148SHong Zhang   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
982d1654148SHong Zhang   PetscInt       message_count,flowcontrolcount;
983d1654148SHong Zhang 
984d1654148SHong Zhang   PetscFunctionBegin;
985d1654148SHong Zhang   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
986d1654148SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
987d1654148SHong Zhang   nz   = bs2*(A->nz + B->nz);
988d1654148SHong Zhang   rlen = mat->rmap->n;
989d1654148SHong Zhang   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
990d1654148SHong Zhang   if (!rank) {
991d1654148SHong Zhang     header[0] = MAT_FILE_CLASSID;
992d1654148SHong Zhang     header[1] = mat->rmap->N;
993d1654148SHong Zhang     header[2] = mat->cmap->N;
994d1654148SHong Zhang 
995d1654148SHong Zhang     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
996d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
997d1654148SHong Zhang     /* get largest number of rows any processor has */
998d1654148SHong Zhang     range = mat->rmap->range;
999d1654148SHong Zhang     for (i=1; i<size; i++) {
1000d1654148SHong Zhang       rlen = PetscMax(rlen,range[i+1] - range[i]);
1001d1654148SHong Zhang     }
1002d1654148SHong Zhang   } else {
1003d1654148SHong Zhang     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1004d1654148SHong Zhang   }
1005d1654148SHong Zhang 
1006d1654148SHong Zhang   ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr);
1007d1654148SHong Zhang   /* compute lengths of each row  */
1008d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1009d1654148SHong Zhang     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1010d1654148SHong Zhang   }
1011d1654148SHong Zhang   /* store the row lengths to the file */
1012d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1013d1654148SHong Zhang   if (!rank) {
1014d1654148SHong Zhang     MPI_Status status;
1015d1654148SHong Zhang     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
1016d1654148SHong Zhang     rlen = (range[1] - range[0])/bs;
1017d1654148SHong Zhang     for (i=0; i<rlen; i++) {
1018d1654148SHong Zhang       for (j=0; j<bs; j++) {
1019d1654148SHong Zhang         row_lens[i*bs+j] = bs*crow_lens[i];
1020d1654148SHong Zhang       }
1021d1654148SHong Zhang     }
1022d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1023d1654148SHong Zhang     for (i=1; i<size; i++) {
1024d1654148SHong Zhang       rlen = (range[i+1] - range[i])/bs;
1025d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1026d1654148SHong Zhang       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1027d1654148SHong Zhang       for (k=0; k<rlen; k++) {
1028d1654148SHong Zhang         for (j=0; j<bs; j++) {
1029d1654148SHong Zhang           row_lens[k*bs+j] = bs*crow_lens[k];
1030d1654148SHong Zhang         }
1031d1654148SHong Zhang       }
1032d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1033d1654148SHong Zhang     }
1034d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1035d1654148SHong Zhang     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1036d1654148SHong Zhang   } else {
1037d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1038d1654148SHong Zhang     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1039d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1040d1654148SHong Zhang   }
1041d1654148SHong Zhang   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1042d1654148SHong Zhang 
1043d1654148SHong Zhang   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1044d1654148SHong Zhang      information needed to make it for each row from a block row. This does require more communication but still not more than
1045d1654148SHong Zhang      the communication needed for the nonzero values  */
1046d1654148SHong Zhang   nzmax = nz; /*  space a largest processor needs */
1047d1654148SHong Zhang   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1048d1654148SHong Zhang   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
1049d1654148SHong Zhang   cnt   = 0;
1050d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1051d1654148SHong Zhang     pcnt = cnt;
1052d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1053d1654148SHong Zhang       if ((col = garray[B->j[j]]) > cstart) break;
1054d1654148SHong Zhang       for (l=0; l<bs; l++) {
1055d1654148SHong Zhang         column_indices[cnt++] = bs*col+l;
1056d1654148SHong Zhang       }
1057d1654148SHong Zhang     }
1058d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1059d1654148SHong Zhang       for (l=0; l<bs; l++) {
1060d1654148SHong Zhang         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1061d1654148SHong Zhang       }
1062d1654148SHong Zhang     }
1063d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1064d1654148SHong Zhang       for (l=0; l<bs; l++) {
1065d1654148SHong Zhang         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1066d1654148SHong Zhang       }
1067d1654148SHong Zhang     }
1068d1654148SHong Zhang     len = cnt - pcnt;
1069d1654148SHong Zhang     for (k=1; k<bs; k++) {
1070580bdb30SBarry Smith       ierr = PetscArraycpy(&column_indices[cnt],&column_indices[pcnt],len);CHKERRQ(ierr);
1071d1654148SHong Zhang       cnt += len;
1072d1654148SHong Zhang     }
1073d1654148SHong Zhang   }
1074d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1075d1654148SHong Zhang 
1076d1654148SHong Zhang   /* store the columns to the file */
1077d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1078d1654148SHong Zhang   if (!rank) {
1079d1654148SHong Zhang     MPI_Status status;
1080d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1081d1654148SHong Zhang     for (i=1; i<size; i++) {
1082d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1083d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1084d1654148SHong Zhang       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1085d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1086d1654148SHong Zhang     }
1087d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1088d1654148SHong Zhang   } else {
1089d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1090d1654148SHong Zhang     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1091d1654148SHong Zhang     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1092d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1093d1654148SHong Zhang   }
1094d1654148SHong Zhang   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1095d1654148SHong Zhang 
1096d1654148SHong Zhang   /* load up the numerical values */
1097d1654148SHong Zhang   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1098d1654148SHong Zhang   cnt  = 0;
1099d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1100d1654148SHong Zhang     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1101d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1102d1654148SHong Zhang       if (garray[B->j[j]] > cstart) break;
1103d1654148SHong Zhang       for (l=0; l<bs; l++) {
1104d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1105d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1106d1654148SHong Zhang         }
1107d1654148SHong Zhang       }
1108d1654148SHong Zhang       cnt += bs;
1109d1654148SHong Zhang     }
1110d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1111d1654148SHong Zhang       for (l=0; l<bs; l++) {
1112d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1113d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1114d1654148SHong Zhang         }
1115d1654148SHong Zhang       }
1116d1654148SHong Zhang       cnt += bs;
1117d1654148SHong Zhang     }
1118d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1119d1654148SHong Zhang       for (l=0; l<bs; l++) {
1120d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1121d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1122d1654148SHong Zhang         }
1123d1654148SHong Zhang       }
1124d1654148SHong Zhang       cnt += bs;
1125d1654148SHong Zhang     }
1126d1654148SHong Zhang     cnt += (bs-1)*rlen;
1127d1654148SHong Zhang   }
1128d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1129d1654148SHong Zhang 
1130d1654148SHong Zhang   /* store the column values to the file */
1131d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1132d1654148SHong Zhang   if (!rank) {
1133d1654148SHong Zhang     MPI_Status status;
1134d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1135d1654148SHong Zhang     for (i=1; i<size; i++) {
1136d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1137d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1138d1654148SHong Zhang       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1139d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1140d1654148SHong Zhang     }
1141d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1142d1654148SHong Zhang   } else {
1143d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1144d1654148SHong Zhang     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1145d1654148SHong Zhang     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1146d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1147d1654148SHong Zhang   }
1148d1654148SHong Zhang   ierr = PetscFree(column_values);CHKERRQ(ierr);
1149d1654148SHong Zhang 
1150d1654148SHong Zhang   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1151d1654148SHong Zhang   if (file) {
1152d1654148SHong Zhang     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1153d1654148SHong Zhang   }
1154d1654148SHong Zhang   PetscFunctionReturn(0);
1155d1654148SHong Zhang }
1156d1654148SHong Zhang 
1157dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
1158a30f8f8cSSatish Balay {
1159dfbe8321SBarry Smith   PetscErrorCode ierr;
1160ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
1161a30f8f8cSSatish Balay 
1162a30f8f8cSSatish Balay   PetscFunctionBegin;
1163251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1164251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1165251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1166251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1167d1654148SHong Zhang   if (iascii || isdraw || issocket) {
1168a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1169d1654148SHong Zhang   } else if (isbinary) {
1170d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1171a30f8f8cSSatish Balay   }
1172a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1173a30f8f8cSSatish Balay }
1174a30f8f8cSSatish Balay 
1175dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1176a30f8f8cSSatish Balay {
1177a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1178dfbe8321SBarry Smith   PetscErrorCode ierr;
1179a30f8f8cSSatish Balay 
1180a30f8f8cSSatish Balay   PetscFunctionBegin;
1181a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1182d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
1183a30f8f8cSSatish Balay #endif
1184a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1185a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
11866bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
11876bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1188a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
11896bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1190a30f8f8cSSatish Balay #else
119105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1192a30f8f8cSSatish Balay #endif
119305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
11946bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
11956bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
11966bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
11976bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
11986bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
11996bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
12006bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
12016bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
12025755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
120305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
120405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
12056bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
12066bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
12076bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1208ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
120905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1210a30f8f8cSSatish Balay #endif
121159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
121259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1213899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1214bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1215901853e0SKris Buschelman 
1216dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1217bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1218bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1219bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
12206214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
12216214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
12226214f412SHong Zhang #endif
1223b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr);
1224b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr);
1225a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1226a30f8f8cSSatish Balay }
1227a30f8f8cSSatish Balay 
1228547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1229547795f9SHong Zhang {
1230547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1231547795f9SHong Zhang   PetscErrorCode    ierr;
1232547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
12336de40e93SBarry Smith   PetscScalar       *from;
12346de40e93SBarry Smith   const PetscScalar *x;
1235547795f9SHong Zhang 
1236547795f9SHong Zhang   PetscFunctionBegin;
1237547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1238e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1239547795f9SHong Zhang 
1240547795f9SHong Zhang   /* diagonal part */
1241547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1242547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1243547795f9SHong Zhang 
1244547795f9SHong Zhang   /* subdiagonal part */
1245547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1246547795f9SHong Zhang 
1247547795f9SHong Zhang   /* copy x into the vec slvec0 */
1248547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
12496de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1250547795f9SHong Zhang 
1251580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1252547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
12536de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1254547795f9SHong Zhang 
1255547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1256547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1257547795f9SHong Zhang   /* supperdiagonal part */
1258547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1259547795f9SHong Zhang   PetscFunctionReturn(0);
1260547795f9SHong Zhang }
1261547795f9SHong Zhang 
1262dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1263a9d4b620SHong Zhang {
1264a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1265dfbe8321SBarry Smith   PetscErrorCode    ierr;
1266d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1267d9ca1df4SBarry Smith   PetscScalar       *from;
1268d9ca1df4SBarry Smith   const PetscScalar *x;
1269a9d4b620SHong Zhang 
1270a9d4b620SHong Zhang   PetscFunctionBegin;
1271a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1272e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1273a9d4b620SHong Zhang 
1274a9d4b620SHong Zhang   /* diagonal part */
1275a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1276fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1277a9d4b620SHong Zhang 
1278a9d4b620SHong Zhang   /* subdiagonal part */
1279a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1280fc165ae2SBarry Smith 
1281a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
12821ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1283d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1284a9d4b620SHong Zhang 
1285580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1286fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1287d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1288fc165ae2SBarry Smith 
1289fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1290ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1291a9d4b620SHong Zhang   /* supperdiagonal part */
1292a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1293a9d4b620SHong Zhang   PetscFunctionReturn(0);
1294a9d4b620SHong Zhang }
1295a9d4b620SHong Zhang 
1296dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1297a30f8f8cSSatish Balay {
1298a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1299dfbe8321SBarry Smith   PetscErrorCode ierr;
13001302d50aSBarry Smith   PetscInt       nt;
1301a30f8f8cSSatish Balay 
1302a30f8f8cSSatish Balay   PetscFunctionBegin;
1303a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1304e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1305e7e72b3dSBarry Smith 
1306a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1307e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
130865d70643SHong Zhang 
1309ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1310b941877fSHong Zhang   /* do diagonal part */
1311b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1312b941877fSHong Zhang   /* do supperdiagonal part */
1313ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1314b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1315b941877fSHong Zhang   /* do subdiagonal part */
1316b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1317ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1318ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1319a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1320a30f8f8cSSatish Balay }
1321a30f8f8cSSatish Balay 
1322dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1323a30f8f8cSSatish Balay {
1324de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1325dfbe8321SBarry Smith   PetscErrorCode    ierr;
1326d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1327d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1328d9ca1df4SBarry Smith   const PetscScalar *x;
1329a9d4b620SHong Zhang 
1330a9d4b620SHong Zhang   PetscFunctionBegin;
1331a9d4b620SHong Zhang   /*
1332ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
13330ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1334a9d4b620SHong Zhang   */
1335a9d4b620SHong Zhang   /* diagonal part */
1336a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
13372dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1338a9d4b620SHong Zhang 
1339a9d4b620SHong Zhang   /* subdiagonal part */
1340a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1341a9d4b620SHong Zhang 
1342a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
13431ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1344d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1345580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
13461ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1347a9d4b620SHong Zhang 
1348ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1349d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1350ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1351a9d4b620SHong Zhang 
1352a9d4b620SHong Zhang   /* supperdiagonal part */
1353a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1354a9d4b620SHong Zhang   PetscFunctionReturn(0);
1355a9d4b620SHong Zhang }
1356a9d4b620SHong Zhang 
1357dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1358a9d4b620SHong Zhang {
1359a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1360dfbe8321SBarry Smith   PetscErrorCode ierr;
1361a30f8f8cSSatish Balay 
1362a30f8f8cSSatish Balay   PetscFunctionBegin;
1363ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1364b941877fSHong Zhang   /* do diagonal part */
1365b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1366b941877fSHong Zhang   /* do supperdiagonal part */
1367ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1368de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1369de8b6608SHong Zhang 
1370b941877fSHong Zhang   /* do subdiagonal part */
1371a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1372ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1373ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1374a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1375a30f8f8cSSatish Balay }
1376a30f8f8cSSatish Balay 
1377a30f8f8cSSatish Balay /*
1378a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1379a30f8f8cSSatish Balay    diagonal block
1380a30f8f8cSSatish Balay */
1381dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1382a30f8f8cSSatish Balay {
1383a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1384dfbe8321SBarry Smith   PetscErrorCode ierr;
1385a30f8f8cSSatish Balay 
1386a30f8f8cSSatish Balay   PetscFunctionBegin;
1387e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1388a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1389a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1390a30f8f8cSSatish Balay }
1391a30f8f8cSSatish Balay 
1392f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1393a30f8f8cSSatish Balay {
1394a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1395dfbe8321SBarry Smith   PetscErrorCode ierr;
1396a30f8f8cSSatish Balay 
1397a30f8f8cSSatish Balay   PetscFunctionBegin;
1398f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1399f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1400a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1401a30f8f8cSSatish Balay }
1402a30f8f8cSSatish Balay 
14031302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1404a30f8f8cSSatish Balay {
1405d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1406d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1407d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1408d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1409d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1410899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1411d0d4cfc2SHong Zhang 
1412a30f8f8cSSatish Balay   PetscFunctionBegin;
1413e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1414d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1415d0d4cfc2SHong Zhang 
1416d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1417d0d4cfc2SHong Zhang     /*
1418d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1419d0d4cfc2SHong Zhang     */
1420d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1421d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1422d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1423d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1424d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
142526fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1426d0d4cfc2SHong Zhang     }
1427dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1428d0d4cfc2SHong Zhang   }
1429d0d4cfc2SHong Zhang 
1430e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1431d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1432d0d4cfc2SHong Zhang 
1433d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1434d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1435d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1436d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1437d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1438d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1439d0d4cfc2SHong Zhang 
1440d0d4cfc2SHong Zhang   cmap = mat->garray;
1441d0d4cfc2SHong Zhang   if (v  || idx) {
1442d0d4cfc2SHong Zhang     if (nztot) {
1443d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1444d0d4cfc2SHong Zhang       PetscInt imark = -1;
1445d0d4cfc2SHong Zhang       if (v) {
1446d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1447d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1448d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1449d0d4cfc2SHong Zhang           else break;
1450d0d4cfc2SHong Zhang         }
1451d0d4cfc2SHong Zhang         imark = i;
1452d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1453d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1454d0d4cfc2SHong Zhang       }
1455d0d4cfc2SHong Zhang       if (idx) {
1456d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1457d0d4cfc2SHong Zhang         if (imark > -1) {
1458d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1459d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1460d0d4cfc2SHong Zhang           }
1461d0d4cfc2SHong Zhang         } else {
1462d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
146326fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1464d0d4cfc2SHong Zhang             else break;
1465d0d4cfc2SHong Zhang           }
1466d0d4cfc2SHong Zhang           imark = i;
1467d0d4cfc2SHong Zhang         }
1468d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1469d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1470d0d4cfc2SHong Zhang       }
1471d0d4cfc2SHong Zhang     } else {
1472d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1473d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1474d0d4cfc2SHong Zhang     }
1475d0d4cfc2SHong Zhang   }
1476d0d4cfc2SHong Zhang   *nz  = nztot;
1477d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1478d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1479a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1480a30f8f8cSSatish Balay }
1481a30f8f8cSSatish Balay 
14821302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1483a30f8f8cSSatish Balay {
1484a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1485a30f8f8cSSatish Balay 
1486a30f8f8cSSatish Balay   PetscFunctionBegin;
1487e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1488a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1489a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1490a30f8f8cSSatish Balay }
1491a30f8f8cSSatish Balay 
1492d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1493d0d4cfc2SHong Zhang {
1494d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1495d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1496d0d4cfc2SHong Zhang 
1497d0d4cfc2SHong Zhang   PetscFunctionBegin;
1498d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1499d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1500d0d4cfc2SHong Zhang }
1501d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1502d0d4cfc2SHong Zhang {
1503d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1504d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1505d0d4cfc2SHong Zhang 
1506d0d4cfc2SHong Zhang   PetscFunctionBegin;
1507d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1508d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1509d0d4cfc2SHong Zhang }
1510d0d4cfc2SHong Zhang 
151199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
151299cafbc1SBarry Smith {
151399cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
151499cafbc1SBarry Smith   PetscErrorCode ierr;
151599cafbc1SBarry Smith 
151699cafbc1SBarry Smith   PetscFunctionBegin;
151799cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
151899cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
151999cafbc1SBarry Smith   PetscFunctionReturn(0);
152099cafbc1SBarry Smith }
152199cafbc1SBarry Smith 
152299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
152399cafbc1SBarry Smith {
152499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
152599cafbc1SBarry Smith   PetscErrorCode ierr;
152699cafbc1SBarry Smith 
152799cafbc1SBarry Smith   PetscFunctionBegin;
152899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
152999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
153099cafbc1SBarry Smith   PetscFunctionReturn(0);
153199cafbc1SBarry Smith }
153299cafbc1SBarry Smith 
15337dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
153436032a97SHong Zhang    Input: isrow       - distributed(parallel),
153536032a97SHong Zhang           iscol_local - locally owned (seq)
153636032a97SHong Zhang */
153736032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
15388f46ffcaSHong Zhang {
15398f46ffcaSHong Zhang   PetscErrorCode ierr;
15408f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
15418f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
154236032a97SHong Zhang 
154336032a97SHong Zhang   PetscFunctionBegin;
15448f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
15458f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
15461098a8e8SHong Zhang   if (sz1 > sz2) {
15471098a8e8SHong Zhang     *flg = PETSC_FALSE;
15481098a8e8SHong Zhang     PetscFunctionReturn(0);
15491098a8e8SHong Zhang   }
15508f46ffcaSHong Zhang 
15518f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
15528f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15538f46ffcaSHong Zhang 
15548f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
15558f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
1556580bdb30SBarry Smith   ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr);
1557580bdb30SBarry Smith   ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr);
15588f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
15598f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
15608f46ffcaSHong Zhang 
15618f46ffcaSHong Zhang   nmatch=0;
15628f46ffcaSHong Zhang   k     = 0;
15638f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
15648f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
15658f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
15668f46ffcaSHong Zhang         k = j; nmatch++;
15678f46ffcaSHong Zhang         break;
15688f46ffcaSHong Zhang       }
15698f46ffcaSHong Zhang     }
15708f46ffcaSHong Zhang   }
15718f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
15728f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15738f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
15748f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
15751098a8e8SHong Zhang   if (nmatch < sz1) {
15761098a8e8SHong Zhang     *flg = PETSC_FALSE;
15771098a8e8SHong Zhang   } else {
15781098a8e8SHong Zhang     *flg = PETSC_TRUE;
15791098a8e8SHong Zhang   }
158036032a97SHong Zhang   PetscFunctionReturn(0);
15818f46ffcaSHong Zhang }
158236032a97SHong Zhang 
15837dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
158436032a97SHong Zhang {
158536032a97SHong Zhang   PetscErrorCode ierr;
158636032a97SHong Zhang   IS             iscol_local;
158736032a97SHong Zhang   PetscInt       csize;
158836032a97SHong Zhang   PetscBool      isequal;
158936032a97SHong Zhang 
159036032a97SHong Zhang   PetscFunctionBegin;
159136032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
159236032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
159336032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
159436032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
159536032a97SHong Zhang   } else {
159636032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
159736032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
159836032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
15998f46ffcaSHong Zhang   }
16008f46ffcaSHong Zhang 
16017dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
16027dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
16038f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
16048f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
16058f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
16068f46ffcaSHong Zhang   }
16078f46ffcaSHong Zhang   PetscFunctionReturn(0);
16088f46ffcaSHong Zhang }
16098f46ffcaSHong Zhang 
1610dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1611a30f8f8cSSatish Balay {
1612a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1613dfbe8321SBarry Smith   PetscErrorCode ierr;
1614a30f8f8cSSatish Balay 
1615a30f8f8cSSatish Balay   PetscFunctionBegin;
1616a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1617a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1618a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1619a30f8f8cSSatish Balay }
1620a30f8f8cSSatish Balay 
1621dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1622a30f8f8cSSatish Balay {
1623a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1624a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1625dfbe8321SBarry Smith   PetscErrorCode ierr;
1626a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1627a30f8f8cSSatish Balay 
1628a30f8f8cSSatish Balay   PetscFunctionBegin;
1629d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
163026fbe8dcSKarl Rupp 
1631a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
163226fbe8dcSKarl Rupp 
1633a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1634a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
163526fbe8dcSKarl Rupp 
1636a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
163726fbe8dcSKarl Rupp 
1638a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1639a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1640a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1641a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1642a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1643a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1644a30f8f8cSSatish Balay     info->memory       = isend[3];
1645a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1646a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1647b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
164826fbe8dcSKarl Rupp 
1649a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1650a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1651a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1652a30f8f8cSSatish Balay     info->memory       = irecv[3];
1653a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1654a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1655b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
165626fbe8dcSKarl Rupp 
1657a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1658a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1659a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1660a30f8f8cSSatish Balay     info->memory       = irecv[3];
1661a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1662f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1663a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1664a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1665a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1666a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1667a30f8f8cSSatish Balay }
1668a30f8f8cSSatish Balay 
1669ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1670a30f8f8cSSatish Balay {
1671a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1672d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1673dfbe8321SBarry Smith   PetscErrorCode ierr;
1674a30f8f8cSSatish Balay 
1675a30f8f8cSSatish Balay   PetscFunctionBegin;
1676e98b92d7SKris Buschelman   switch (op) {
1677512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1678e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167928b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1680a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1681c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1682e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
168343674050SBarry Smith     MatCheckPreallocated(A,1);
16844e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16854e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1686e98b92d7SKris Buschelman     break;
1687e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
168843674050SBarry Smith     MatCheckPreallocated(A,1);
16894e0d8c25SBarry Smith     a->roworiented = flg;
169026fbe8dcSKarl Rupp 
16914e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16924e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1693e98b92d7SKris Buschelman     break;
16944e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1695*071fcb05SBarry Smith   case MAT_SORTED_FULL:
1696290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1697e98b92d7SKris Buschelman     break;
1698e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
16994e0d8c25SBarry Smith     a->donotstash = flg;
1700e98b92d7SKris Buschelman     break;
1701e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
17024e0d8c25SBarry Smith     a->ht_flag = flg;
1703e98b92d7SKris Buschelman     break;
17049a4540c5SBarry Smith   case MAT_HERMITIAN:
170543674050SBarry Smith     MatCheckPreallocated(A,1);
1706e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1707eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
17080f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1709547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
17100f2140c7SStefano Zampini #endif
1711eeffb40dSHong Zhang     break;
1712ffa07934SHong Zhang   case MAT_SPD:
1713ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1714ffa07934SHong Zhang     A->spd     = flg;
1715ffa07934SHong Zhang     if (flg) {
1716ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1717ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1718ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1719ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1720ffa07934SHong Zhang     }
1721ffa07934SHong Zhang     break;
172277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
172343674050SBarry Smith     MatCheckPreallocated(A,1);
1724eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1725eeffb40dSHong Zhang     break;
172677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
172743674050SBarry Smith     MatCheckPreallocated(A,1);
1728eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1729eeffb40dSHong Zhang     break;
17309a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1731e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1732290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
173377e54ba9SKris Buschelman     break;
1734d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
17354e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1736d0d4cfc2SHong Zhang     break;
1737d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
17384e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1739d0d4cfc2SHong Zhang     break;
1740d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
17414e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1742d0d4cfc2SHong Zhang     break;
1743e98b92d7SKris Buschelman   default:
1744e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1745a30f8f8cSSatish Balay   }
1746a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1747a30f8f8cSSatish Balay }
1748a30f8f8cSSatish Balay 
1749fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1750a30f8f8cSSatish Balay {
1751dfbe8321SBarry Smith   PetscErrorCode ierr;
17526e111a19SKarl Rupp 
1753a30f8f8cSSatish Balay   PetscFunctionBegin;
1754cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1755999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1756cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1757cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1758fc4dec0aSBarry Smith   }
17598115998fSBarry Smith   PetscFunctionReturn(0);
1760a30f8f8cSSatish Balay }
1761a30f8f8cSSatish Balay 
1762dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1763a30f8f8cSSatish Balay {
1764a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1765a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1766dfbe8321SBarry Smith   PetscErrorCode ierr;
17675e90f9d9SHong Zhang   PetscInt       nv,m,n;
1768ace3abfcSBarry Smith   PetscBool      flg;
1769a30f8f8cSSatish Balay 
1770a30f8f8cSSatish Balay   PetscFunctionBegin;
1771a30f8f8cSSatish Balay   if (ll != rr) {
1772b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1773e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1774a30f8f8cSSatish Balay   }
1775b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1776b3bf805bSHong Zhang 
17775e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1778e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1779b3bf805bSHong Zhang 
17805e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1781e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
17825e90f9d9SHong Zhang 
1783ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17845e90f9d9SHong Zhang 
17855e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
17860298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
17875e90f9d9SHong Zhang 
17885e90f9d9SHong Zhang   /* scale the diagonal part */
1789a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1790a30f8f8cSSatish Balay 
17915e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1792ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17930298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1794a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1795a30f8f8cSSatish Balay }
1796a30f8f8cSSatish Balay 
1797dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1798a30f8f8cSSatish Balay {
1799f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1800dfbe8321SBarry Smith   PetscErrorCode ierr;
1801a30f8f8cSSatish Balay 
1802a30f8f8cSSatish Balay   PetscFunctionBegin;
1803a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1804a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1805a30f8f8cSSatish Balay }
1806a30f8f8cSSatish Balay 
18076849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1808a30f8f8cSSatish Balay 
1809ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1810a30f8f8cSSatish Balay {
1811a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1812a30f8f8cSSatish Balay   Mat            a,b,c,d;
1813ace3abfcSBarry Smith   PetscBool      flg;
1814dfbe8321SBarry Smith   PetscErrorCode ierr;
1815a30f8f8cSSatish Balay 
1816a30f8f8cSSatish Balay   PetscFunctionBegin;
1817a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1818a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1819a30f8f8cSSatish Balay 
1820a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1821abc0a331SBarry Smith   if (flg) {
1822a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1823a30f8f8cSSatish Balay   }
1824b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1825a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1826a30f8f8cSSatish Balay }
1827a30f8f8cSSatish Balay 
18283c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
18293c896bc6SHong Zhang {
18303c896bc6SHong Zhang   PetscErrorCode ierr;
18314c7a3774SStefano Zampini   PetscBool      isbaij;
18323c896bc6SHong Zhang 
18333c896bc6SHong Zhang   PetscFunctionBegin;
18344c7a3774SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr);
18354c7a3774SStefano Zampini   if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
18363c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18373c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1838d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
18393c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1840d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
18413c896bc6SHong Zhang   } else {
18424c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
18434c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
18444c7a3774SStefano Zampini 
18453c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18463c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18473c896bc6SHong Zhang   }
1848cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
18493c896bc6SHong Zhang   PetscFunctionReturn(0);
18503c896bc6SHong Zhang }
18513c896bc6SHong Zhang 
18524994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1853273d9f13SBarry Smith {
1854dfbe8321SBarry Smith   PetscErrorCode ierr;
1855273d9f13SBarry Smith 
1856273d9f13SBarry Smith   PetscFunctionBegin;
1857535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1858273d9f13SBarry Smith   PetscFunctionReturn(0);
1859273d9f13SBarry Smith }
1860a5e6ed63SBarry Smith 
18614fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18624fe895cdSHong Zhang {
18634fe895cdSHong Zhang   PetscErrorCode ierr;
18644fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
18654fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18664fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
18674fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
18684fe895cdSHong Zhang 
18694fe895cdSHong Zhang   PetscFunctionBegin;
18704fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18714fe895cdSHong Zhang     PetscScalar alpha = a;
18724fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
18734fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1874c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
18758b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
18764fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
18774fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1878c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
18798b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1880a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1881ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1882ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1883ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1884ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
18854fe895cdSHong Zhang   } else {
18864de5dceeSHong Zhang     Mat      B;
18874de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
18884de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1889d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
18904de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
18914de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
18924de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
18934de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
18944de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
18954de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
18964de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
18974de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
18984de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
18994de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
19004de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
19014de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
190228be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
19034de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
19044de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1905d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
19064de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
19074fe895cdSHong Zhang   }
19084fe895cdSHong Zhang   PetscFunctionReturn(0);
19094fe895cdSHong Zhang }
19104fe895cdSHong Zhang 
19117dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1912a5e6ed63SBarry Smith {
19136849ba73SBarry Smith   PetscErrorCode ierr;
19141302d50aSBarry Smith   PetscInt       i;
1915afebec48SHong Zhang   PetscBool      flg;
1916a5e6ed63SBarry Smith 
19176849ba73SBarry Smith   PetscFunctionBegin;
19187dae84e0SHong Zhang   ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1919a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1920a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1921afebec48SHong Zhang     if (!flg) {
1922b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1923a5e6ed63SBarry Smith     }
19244dcd73b1SHong Zhang   }
1925a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1926a5e6ed63SBarry Smith }
1927a5e6ed63SBarry Smith 
19287d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
19297d68702bSBarry Smith {
19307d68702bSBarry Smith   PetscErrorCode ierr;
19317d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
19326f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
19337d68702bSBarry Smith 
19347d68702bSBarry Smith   PetscFunctionBegin;
19356f33a894SBarry Smith   if (!Y->preallocated) {
19367d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
19376f33a894SBarry Smith   } else if (!aij->nz) {
1938b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
19396f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1940b83222d8SBarry Smith     aij->nonew = nonew;
19417d68702bSBarry Smith   }
19427d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
19437d68702bSBarry Smith   PetscFunctionReturn(0);
19447d68702bSBarry Smith }
19457d68702bSBarry Smith 
19463b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
19473b49f96aSBarry Smith {
19483b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
19493b49f96aSBarry Smith   PetscErrorCode ierr;
19503b49f96aSBarry Smith 
19513b49f96aSBarry Smith   PetscFunctionBegin;
19523b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
19533b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
19543b49f96aSBarry Smith   if (d) {
19553b49f96aSBarry Smith     PetscInt rstart;
19563b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
19573b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
19583b49f96aSBarry Smith 
19593b49f96aSBarry Smith   }
19603b49f96aSBarry Smith   PetscFunctionReturn(0);
19613b49f96aSBarry Smith }
19623b49f96aSBarry Smith 
1963a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1964a5b7ff6bSBarry Smith {
1965a5b7ff6bSBarry Smith   PetscFunctionBegin;
1966a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1967a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1968a5b7ff6bSBarry Smith }
19693b49f96aSBarry Smith 
1970a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
19713964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1972a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1973a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1974a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
197597304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1976431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1977431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1978a30f8f8cSSatish Balay                                        0,
1979a30f8f8cSSatish Balay                                        0,
1980a30f8f8cSSatish Balay                                        0,
198197304618SKris Buschelman                                /* 10*/ 0,
1982a30f8f8cSSatish Balay                                        0,
1983a30f8f8cSSatish Balay                                        0,
198441f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1985a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
198697304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1987a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1988a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1989a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1990a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
199197304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1992a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1993a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1994a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1995d519adbfSMatthew Knepley                                /* 24*/ 0,
1996a30f8f8cSSatish Balay                                        0,
1997a30f8f8cSSatish Balay                                        0,
1998a30f8f8cSSatish Balay                                        0,
1999a30f8f8cSSatish Balay                                        0,
20004994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
2001b5df2d14SHong Zhang                                        0,
2002a30f8f8cSSatish Balay                                        0,
2003a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
2004a30f8f8cSSatish Balay                                        0,
2005d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
2006a30f8f8cSSatish Balay                                        0,
2007a30f8f8cSSatish Balay                                        0,
2008a30f8f8cSSatish Balay                                        0,
2009a30f8f8cSSatish Balay                                        0,
2010d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
20117dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
2012d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
2013a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
20143c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
2015d519adbfSMatthew Knepley                                /* 44*/ 0,
2016a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
20177d68702bSBarry Smith                                        MatShift_MPISBAIJ,
2018a30f8f8cSSatish Balay                                        0,
2019a30f8f8cSSatish Balay                                        0,
2020f73d5cc4SBarry Smith                                /* 49*/ 0,
2021a30f8f8cSSatish Balay                                        0,
2022a30f8f8cSSatish Balay                                        0,
2023a30f8f8cSSatish Balay                                        0,
2024a30f8f8cSSatish Balay                                        0,
2025d519adbfSMatthew Knepley                                /* 54*/ 0,
2026a30f8f8cSSatish Balay                                        0,
2027a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
2028a30f8f8cSSatish Balay                                        0,
2029a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
20307dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
2031a30f8f8cSSatish Balay                                        0,
2032a30f8f8cSSatish Balay                                        0,
2033357abbc8SBarry Smith                                        0,
203424d5174aSHong Zhang                                        0,
2035d519adbfSMatthew Knepley                                /* 64*/ 0,
203624d5174aSHong Zhang                                        0,
203724d5174aSHong Zhang                                        0,
203824d5174aSHong Zhang                                        0,
203924d5174aSHong Zhang                                        0,
2040d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
204124d5174aSHong Zhang                                        0,
204297304618SKris Buschelman                                        0,
204397304618SKris Buschelman                                        0,
204497304618SKris Buschelman                                        0,
2045d519adbfSMatthew Knepley                                /* 74*/ 0,
204697304618SKris Buschelman                                        0,
204797304618SKris Buschelman                                        0,
204897304618SKris Buschelman                                        0,
204997304618SKris Buschelman                                        0,
2050d519adbfSMatthew Knepley                                /* 79*/ 0,
205197304618SKris Buschelman                                        0,
205297304618SKris Buschelman                                        0,
205397304618SKris Buschelman                                        0,
20545bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
2055d519adbfSMatthew Knepley                                /* 84*/ 0,
2056865e5f61SKris Buschelman                                        0,
2057865e5f61SKris Buschelman                                        0,
2058865e5f61SKris Buschelman                                        0,
2059865e5f61SKris Buschelman                                        0,
2060d519adbfSMatthew Knepley                                /* 89*/ 0,
2061865e5f61SKris Buschelman                                        0,
2062865e5f61SKris Buschelman                                        0,
2063865e5f61SKris Buschelman                                        0,
2064865e5f61SKris Buschelman                                        0,
2065d519adbfSMatthew Knepley                                /* 94*/ 0,
2066865e5f61SKris Buschelman                                        0,
2067865e5f61SKris Buschelman                                        0,
206899cafbc1SBarry Smith                                        0,
206999cafbc1SBarry Smith                                        0,
2070d519adbfSMatthew Knepley                                /* 99*/ 0,
207199cafbc1SBarry Smith                                        0,
207299cafbc1SBarry Smith                                        0,
207399cafbc1SBarry Smith                                        0,
207499cafbc1SBarry Smith                                        0,
2075d519adbfSMatthew Knepley                                /*104*/ 0,
207699cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
2077d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
2078d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
207995936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
208095936485SShri Abhyankar                                /*109*/ 0,
208195936485SShri Abhyankar                                        0,
208295936485SShri Abhyankar                                        0,
208395936485SShri Abhyankar                                        0,
20843b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
208595936485SShri Abhyankar                                /*114*/ 0,
208695936485SShri Abhyankar                                        0,
208795936485SShri Abhyankar                                        0,
208895936485SShri Abhyankar                                        0,
208995936485SShri Abhyankar                                        0,
209095936485SShri Abhyankar                                /*119*/ 0,
209195936485SShri Abhyankar                                        0,
209295936485SShri Abhyankar                                        0,
20933964eb88SJed Brown                                        0,
20943964eb88SJed Brown                                        0,
20953964eb88SJed Brown                                /*124*/ 0,
20963964eb88SJed Brown                                        0,
20973964eb88SJed Brown                                        0,
20983964eb88SJed Brown                                        0,
20993964eb88SJed Brown                                        0,
21003964eb88SJed Brown                                /*129*/ 0,
21013964eb88SJed Brown                                        0,
21023964eb88SJed Brown                                        0,
21033964eb88SJed Brown                                        0,
21043964eb88SJed Brown                                        0,
21053964eb88SJed Brown                                /*134*/ 0,
21063964eb88SJed Brown                                        0,
21073964eb88SJed Brown                                        0,
21083964eb88SJed Brown                                        0,
21093964eb88SJed Brown                                        0,
211046533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2111f9426fe0SMark Adams                                        0,
211259f5e6ceSHong Zhang                                        0,
211359f5e6ceSHong Zhang                                        0,
211459f5e6ceSHong Zhang                                        0,
211559f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
211699cafbc1SBarry Smith };
2117a30f8f8cSSatish Balay 
2118b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2119a23d5eceSKris Buschelman {
2120a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
2121dfbe8321SBarry Smith   PetscErrorCode ierr;
2122535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
21235d2a9ed1SStefano Zampini   PetscMPIInt    size;
2124a23d5eceSKris Buschelman 
2125a23d5eceSKris Buschelman   PetscFunctionBegin;
212633d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
212726283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
212826283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2129e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2130899cda47SBarry Smith 
2131a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
2132d0f46423SBarry Smith   mbs = B->rmap->n/bs;
2133d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
2134c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
2135a23d5eceSKris Buschelman 
2136d0f46423SBarry Smith   B->rmap->bs = bs;
2137a23d5eceSKris Buschelman   b->bs2      = bs*bs;
2138a23d5eceSKris Buschelman   b->mbs      = mbs;
2139a23d5eceSKris Buschelman   b->Mbs      = Mbs;
2140de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
2141de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
2142a23d5eceSKris Buschelman 
2143a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2144d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2145a23d5eceSKris Buschelman   }
2146d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2147d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2148a23d5eceSKris Buschelman 
2149d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2150d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2151a23d5eceSKris Buschelman 
2152cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2153cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2154cb7b82ddSBarry Smith #else
2155cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2156cb7b82ddSBarry Smith #endif
2157cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2158cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2159cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2160cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
2161cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
2162cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
2163cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
2164cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
2165cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
2166cb7b82ddSBarry Smith 
2167cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
21685d2a9ed1SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2169cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2170cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
21715d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2172cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2173cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2174cb7b82ddSBarry Smith 
2175526dfc15SBarry Smith   if (!B->preallocated) {
2176f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2177d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
21789c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
21793bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2180ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2181526dfc15SBarry Smith   }
2182a23d5eceSKris Buschelman 
2183526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2184526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
218526fbe8dcSKarl Rupp 
2186526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2187cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2188cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2189a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2190a23d5eceSKris Buschelman }
2191a23d5eceSKris Buschelman 
2192dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2193dfb205c3SBarry Smith {
2194dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
2195dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2196dfb205c3SBarry Smith   const PetscInt *JJ    =0;
2197dfb205c3SBarry Smith   PetscScalar    *values=0;
2198dfb205c3SBarry Smith   PetscErrorCode ierr;
2199dfb205c3SBarry Smith 
2200dfb205c3SBarry Smith   PetscFunctionBegin;
2201ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2202dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2203dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2204dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2205dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2206e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2207dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2208dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2209dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
2210dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2211dfb205c3SBarry Smith 
2212dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2213dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2214dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2215dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2216dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2217dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
2218dfb205c3SBarry Smith     JJ     = jj + ii[i];
2219dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
2220dfb205c3SBarry Smith       if (*JJ >= cstart) break;
2221dfb205c3SBarry Smith       JJ++;
2222dfb205c3SBarry Smith     }
2223dfb205c3SBarry Smith     d = 0;
2224dfb205c3SBarry Smith     for (; j<nz; j++) {
2225dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2226dfb205c3SBarry Smith       d++;
2227dfb205c3SBarry Smith     }
2228dfb205c3SBarry Smith     d_nnz[i] = d;
2229dfb205c3SBarry Smith     o_nnz[i] = nz - d;
2230dfb205c3SBarry Smith   }
2231dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2232dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2233dfb205c3SBarry Smith 
2234dfb205c3SBarry Smith   values = (PetscScalar*)V;
2235dfb205c3SBarry Smith   if (!values) {
2236580bdb30SBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2237dfb205c3SBarry Smith   }
2238dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2239dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2240dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2241dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2242dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2243dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2244dfb205c3SBarry Smith   }
2245dfb205c3SBarry Smith 
2246dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2247dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2248dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22497827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2250dfb205c3SBarry Smith   PetscFunctionReturn(0);
2251dfb205c3SBarry Smith }
2252dfb205c3SBarry Smith 
22530bad9183SKris Buschelman /*MC
2254fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2255828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2256828413b8SBarry Smith    the matrix is stored.
2257828413b8SBarry Smith 
2258828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2259828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
22600bad9183SKris Buschelman 
22610bad9183SKris Buschelman    Options Database Keys:
22620bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
22630bad9183SKris Buschelman 
22640bad9183SKris Buschelman   Level: beginner
22650bad9183SKris Buschelman 
22660bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
22670bad9183SKris Buschelman M*/
22680bad9183SKris Buschelman 
22698cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2270b5df2d14SHong Zhang {
2271b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2272dfbe8321SBarry Smith   PetscErrorCode ierr;
227394ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2274b5df2d14SHong Zhang 
2275b5df2d14SHong Zhang   PetscFunctionBegin;
2276b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2277b0a32e0cSBarry Smith   B->data = (void*)b;
2278b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2279b5df2d14SHong Zhang 
2280b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2281b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2282b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2283b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
228426fbe8dcSKarl Rupp 
2285ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2286ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2287b5df2d14SHong Zhang 
2288b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2289854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2290b5df2d14SHong Zhang 
2291b5df2d14SHong Zhang   /* build cache for off array entries formed */
2292ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
229326fbe8dcSKarl Rupp 
2294b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
22950298fd71SBarry Smith   b->colmap      = NULL;
22960298fd71SBarry Smith   b->garray      = NULL;
2297b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2298b5df2d14SHong Zhang 
2299b5df2d14SHong Zhang   /* stuff used in block assembly */
2300b5df2d14SHong Zhang   b->barray = 0;
2301b5df2d14SHong Zhang 
2302b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2303b5df2d14SHong Zhang   b->lvec    = 0;
2304b5df2d14SHong Zhang   b->Mvctx   = 0;
230540781036SHong Zhang   b->slvec0  = 0;
230640781036SHong Zhang   b->slvec0b = 0;
230740781036SHong Zhang   b->slvec1  = 0;
230840781036SHong Zhang   b->slvec1a = 0;
230940781036SHong Zhang   b->slvec1b = 0;
231040781036SHong Zhang   b->sMvctx  = 0;
2311b5df2d14SHong Zhang 
2312b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2313b5df2d14SHong Zhang   b->rowindices   = 0;
2314b5df2d14SHong Zhang   b->rowvalues    = 0;
2315b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2316b5df2d14SHong Zhang 
2317b5df2d14SHong Zhang   /* hash table stuff */
2318b5df2d14SHong Zhang   b->ht           = 0;
2319b5df2d14SHong Zhang   b->hd           = 0;
2320b5df2d14SHong Zhang   b->ht_size      = 0;
2321b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2322b5df2d14SHong Zhang   b->ht_fact      = 0;
2323b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2324b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2325b5df2d14SHong Zhang 
23267dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
23277a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
23287a868f3eSHong Zhang 
232959ffdab8SBarry Smith   b->in_loc = 0;
233059ffdab8SBarry Smith   b->v_loc  = 0;
233159ffdab8SBarry Smith   b->n_loc  = 0;
233294ae4db5SBarry Smith 
2333bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2334bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2335bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2336bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
23376214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
23386214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
23396214f412SHong Zhang #endif
2340b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_XAIJ);CHKERRQ(ierr);
2341b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_XAIJ);CHKERRQ(ierr);
2342aa5a9175SDahai Guo 
234323ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
234423ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
234523ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
234623ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
23479899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
234826fbe8dcSKarl Rupp 
234913647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
235013647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
235113647f61SHong Zhang 
235217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
235394ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
235494ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
235594ae4db5SBarry Smith   if (flg) {
235694ae4db5SBarry Smith     PetscReal fact = 1.39;
235794ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
235894ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
235994ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
236094ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
236194ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
236294ae4db5SBarry Smith   }
236394ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2364b5df2d14SHong Zhang   PetscFunctionReturn(0);
2365b5df2d14SHong Zhang }
2366b5df2d14SHong Zhang 
2367209238afSKris Buschelman /*MC
2368002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2369209238afSKris Buschelman 
2370209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2371209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2372209238afSKris Buschelman 
2373209238afSKris Buschelman    Options Database Keys:
2374209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2375209238afSKris Buschelman 
2376209238afSKris Buschelman   Level: beginner
2377209238afSKris Buschelman 
2378209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2379209238afSKris Buschelman M*/
2380209238afSKris Buschelman 
2381b5df2d14SHong Zhang /*@C
2382b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2383b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2384b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2385b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2386b5df2d14SHong Zhang 
2387b5df2d14SHong Zhang    Collective on Mat
2388b5df2d14SHong Zhang 
2389b5df2d14SHong Zhang    Input Parameters:
23901c4f3114SJed Brown +  B - the matrix
2391bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2392bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2393b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2394b5df2d14SHong Zhang            submatrix  (same for all local rows)
2395b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
23966d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
23970298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
239895742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2399b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2400b5df2d14SHong Zhang            submatrix (same for all local rows).
2401b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2402c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
24030298fd71SBarry Smith            (possibly different for each block row) or NULL.
2404b5df2d14SHong Zhang 
2405b5df2d14SHong Zhang 
2406b5df2d14SHong Zhang    Options Database Keys:
2407b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
2408b5df2d14SHong Zhang                      block calculations (much slower)
2409b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
2410b5df2d14SHong Zhang 
2411b5df2d14SHong Zhang    Notes:
2412b5df2d14SHong Zhang 
2413b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2414b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2415b5df2d14SHong Zhang 
241649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
241749a6f317SBarry Smith 
2418b5df2d14SHong Zhang    Storage Information:
2419b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2420b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2421b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2422b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2423b5df2d14SHong Zhang 
2424b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2425b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
24260298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2427b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2428b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2429b5df2d14SHong Zhang 
2430aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2431aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2432aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2433aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2434aa95bbe8SBarry Smith 
2435b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2436b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2437b5df2d14SHong Zhang 
2438b5df2d14SHong Zhang .vb
2439b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2440a4b1a0f6SJed Brown           --------------------------
2441c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2442c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2443c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2444a4b1a0f6SJed Brown           --------------------------
2445b5df2d14SHong Zhang .ve
2446b5df2d14SHong Zhang 
2447b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2448b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
24496d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
24506d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2451b5df2d14SHong Zhang 
24526d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
24536d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2454c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2455c2fc9fa9SBarry Smith 
2456b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2457b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2458b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2459b5df2d14SHong Zhang    matrices.
2460b5df2d14SHong Zhang 
2461b5df2d14SHong Zhang    Level: intermediate
2462b5df2d14SHong Zhang 
2463ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2464b5df2d14SHong Zhang @*/
24657087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2466b5df2d14SHong Zhang {
24674ac538c5SBarry Smith   PetscErrorCode ierr;
2468b5df2d14SHong Zhang 
2469b5df2d14SHong Zhang   PetscFunctionBegin;
24706ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
24716ba663aaSJed Brown   PetscValidType(B,1);
24726ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
24734ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2474b5df2d14SHong Zhang   PetscFunctionReturn(0);
2475b5df2d14SHong Zhang }
2476b5df2d14SHong Zhang 
2477a30f8f8cSSatish Balay /*@C
247869b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2479a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2480a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2481a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2482a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2483a30f8f8cSSatish Balay 
2484d083f849SBarry Smith    Collective
2485a30f8f8cSSatish Balay 
2486a30f8f8cSSatish Balay    Input Parameters:
2487a30f8f8cSSatish Balay +  comm - MPI communicator
2488bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2489bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2490a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2491a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2492a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2493a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2494a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2495a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2496a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2497a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2498a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2499a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2500a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
25016d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
25020298fd71SBarry Smith            (possibly different for each block block row) or NULL.
250395742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
250495742e49SBarry Smith            set its value even if it is zero.
2505a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2506a30f8f8cSSatish Balay            submatrix (same for all local rows).
2507a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2508a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
25090298fd71SBarry Smith            each block row) or NULL.
2510a30f8f8cSSatish Balay 
2511a30f8f8cSSatish Balay    Output Parameter:
2512a30f8f8cSSatish Balay .  A - the matrix
2513a30f8f8cSSatish Balay 
2514a30f8f8cSSatish Balay    Options Database Keys:
2515a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2516a30f8f8cSSatish Balay                      block calculations (much slower)
2517a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2518a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2519a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2520a30f8f8cSSatish Balay 
2521175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2522f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2523175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2524175b88e8SBarry Smith 
2525a30f8f8cSSatish Balay    Notes:
2526d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
25276d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2528d1be2dadSMatthew Knepley 
2529a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2530a30f8f8cSSatish Balay    (possibly both).
2531a30f8f8cSSatish Balay 
2532a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2533a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2534a30f8f8cSSatish Balay 
253549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
253649a6f317SBarry Smith 
2537a30f8f8cSSatish Balay    Storage Information:
2538a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2539a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2540a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2541a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2542a30f8f8cSSatish Balay 
2543a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2544a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
25450298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2546a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2547a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2548a30f8f8cSSatish Balay 
2549a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2550a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2551a30f8f8cSSatish Balay 
2552a30f8f8cSSatish Balay .vb
2553a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2554a4b1a0f6SJed Brown           --------------------------
2555c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2556c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2557c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2558a4b1a0f6SJed Brown           --------------------------
2559a30f8f8cSSatish Balay .ve
2560a30f8f8cSSatish Balay 
2561a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2562a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
25636d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
25646d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2565a30f8f8cSSatish Balay 
25666d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
25676d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2568a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2569a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2570a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2571a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2572a30f8f8cSSatish Balay    matrices.
2573a30f8f8cSSatish Balay 
2574a30f8f8cSSatish Balay    Level: intermediate
2575a30f8f8cSSatish Balay 
257669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2577a30f8f8cSSatish Balay @*/
2578a30f8f8cSSatish Balay 
257969b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2580a30f8f8cSSatish Balay {
25816849ba73SBarry Smith   PetscErrorCode ierr;
25821302d50aSBarry Smith   PetscMPIInt    size;
2583a30f8f8cSSatish Balay 
2584a30f8f8cSSatish Balay   PetscFunctionBegin;
2585f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2586f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2587273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2588273d9f13SBarry Smith   if (size > 1) {
2589b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2590b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2591273d9f13SBarry Smith   } else {
2592273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2593273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2594273d9f13SBarry Smith   }
2595a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2596a30f8f8cSSatish Balay }
2597a30f8f8cSSatish Balay 
2598a30f8f8cSSatish Balay 
25996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2600a30f8f8cSSatish Balay {
2601a30f8f8cSSatish Balay   Mat            mat;
2602a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2603dfbe8321SBarry Smith   PetscErrorCode ierr;
2604d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2605387bc808SHong Zhang   PetscScalar    *array;
2606a30f8f8cSSatish Balay 
2607a30f8f8cSSatish Balay   PetscFunctionBegin;
2608a30f8f8cSSatish Balay   *newmat = 0;
260926fbe8dcSKarl Rupp 
2610ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2611d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
26127adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
26131e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
26141e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2615e1b6402fSHong Zhang 
2616d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2617273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
261882327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
26197fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26207fff6886SHong Zhang 
2621b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2622a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2623a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2624a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2625a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2626a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2627a30f8f8cSSatish Balay 
2628a30f8f8cSSatish Balay   a->size         = oldmat->size;
2629a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2630a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2631a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2632a30f8f8cSSatish Balay   a->rowindices   = 0;
2633a30f8f8cSSatish Balay   a->rowvalues    = 0;
2634a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2635a30f8f8cSSatish Balay   a->barray       = 0;
2636899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2637899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2638899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2639899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2640a30f8f8cSSatish Balay 
2641a30f8f8cSSatish Balay   /* hash table stuff */
2642a30f8f8cSSatish Balay   a->ht           = 0;
2643a30f8f8cSSatish Balay   a->hd           = 0;
2644a30f8f8cSSatish Balay   a->ht_size      = 0;
2645a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2646a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2647a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2648a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2649a30f8f8cSSatish Balay 
2650580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr);
2651a30f8f8cSSatish Balay   if (oldmat->colmap) {
2652a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2653a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2654a30f8f8cSSatish Balay #else
2655854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
26563bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2657580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
2658a30f8f8cSSatish Balay #endif
2659a30f8f8cSSatish Balay   } else a->colmap = 0;
2660387bc808SHong Zhang 
2661a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2662785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
26633bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2664580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
2665a30f8f8cSSatish Balay   } else a->garray = 0;
2666a30f8f8cSSatish Balay 
2667ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2668a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
26693bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2670a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
26713bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
267282327fa8SHong Zhang 
267382327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
26743bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
267582327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
26763bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2677387bc808SHong Zhang 
2678387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
26791ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2680778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2681778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
26821ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
26831ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2684778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
26851ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
26863bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
26873bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
26883bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
26893bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
26903bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2691387bc808SHong Zhang 
2692387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2693387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2694387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
26953bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
269682327fa8SHong Zhang 
2697a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
26983bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2699a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
27003bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2701140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2702a30f8f8cSSatish Balay   *newmat = mat;
2703a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2704a30f8f8cSSatish Balay }
2705a30f8f8cSSatish Balay 
2706112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
270795936485SShri Abhyankar {
270895936485SShri Abhyankar   PetscErrorCode ierr;
270995936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
271095936485SShri Abhyankar   PetscScalar    *vals,*buf;
2711ce94432eSBarry Smith   MPI_Comm       comm;
271295936485SShri Abhyankar   MPI_Status     status;
2713adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2714adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
271595936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
27163059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
271795936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2718461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
271995936485SShri Abhyankar   int            fd;
27207f489da9SVaclav Hapla   PetscBool      isbinary;
272195936485SShri Abhyankar 
272295936485SShri Abhyankar   PetscFunctionBegin;
27237f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
27247f489da9SVaclav Hapla   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name);
27257f489da9SVaclav Hapla 
2726c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2727c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2728ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
27290298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
27300298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
273195936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
27323059b6faSBarry Smith   if (bs < 0) bs = 1;
273395936485SShri Abhyankar 
273495936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
273595936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
273695936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
27375872f025SBarry Smith   if (!rank) {
27389860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,(char*)header,4,NULL,PETSC_INT);CHKERRQ(ierr);
273995936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
274002f61395SBarry Smith     if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
274195936485SShri Abhyankar   }
274295936485SShri Abhyankar 
274395936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
274426fbe8dcSKarl Rupp   M    = header[1];
274526fbe8dcSKarl Rupp   N    = header[2];
274695936485SShri Abhyankar 
274795936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2748461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2749461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
275095936485SShri Abhyankar 
275195936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
275295936485SShri Abhyankar 
275395936485SShri Abhyankar   /*
275495936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
275595936485SShri Abhyankar      divisible by the blocksize
275695936485SShri Abhyankar   */
275795936485SShri Abhyankar   Mbs        = M/bs;
275895936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
275995936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
276095936485SShri Abhyankar   else                  Mbs++;
276195936485SShri Abhyankar   if (extra_rows &&!rank) {
276295936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
276395936485SShri Abhyankar   }
276495936485SShri Abhyankar 
276595936485SShri Abhyankar   /* determine ownership of all rows */
276695936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
276795936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
276895936485SShri Abhyankar     m   = mbs*bs;
276995936485SShri Abhyankar   } else { /* User Set */
277095936485SShri Abhyankar     m   = newmat->rmap->n;
277195936485SShri Abhyankar     mbs = m/bs;
277295936485SShri Abhyankar   }
2773dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
27744dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
277595936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
277695936485SShri Abhyankar   rowners[0] = 0;
277795936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
277895936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
277995936485SShri Abhyankar   rstart = rowners[rank];
278095936485SShri Abhyankar   rend   = rowners[rank+1];
278195936485SShri Abhyankar 
278295936485SShri Abhyankar   /* distribute row lengths to all processors */
2783785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
278495936485SShri Abhyankar   if (!rank) {
2785854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
27869860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,rowlengths,M,NULL,PETSC_INT);CHKERRQ(ierr);
278795936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2788785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
278995936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
279095936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
279195936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
279295936485SShri Abhyankar   } else {
279395936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
279495936485SShri Abhyankar   }
279595936485SShri Abhyankar 
279695936485SShri Abhyankar   if (!rank) {   /* procs[0] */
279795936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2798580bdb30SBarry Smith     ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr);
279995936485SShri Abhyankar     for (i=0; i<size; i++) {
280095936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
280195936485SShri Abhyankar         procsnz[i] += rowlengths[j];
280295936485SShri Abhyankar       }
280395936485SShri Abhyankar     }
280495936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
280595936485SShri Abhyankar 
280695936485SShri Abhyankar     /* determine max buffer needed and allocate it */
280795936485SShri Abhyankar     maxnz = 0;
280895936485SShri Abhyankar     for (i=0; i<size; i++) {
280995936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
281095936485SShri Abhyankar     }
2811785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
281295936485SShri Abhyankar 
281395936485SShri Abhyankar     /* read in my part of the matrix column indices  */
281495936485SShri Abhyankar     nz     = procsnz[0];
2815785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
281695936485SShri Abhyankar     mycols = ibuf;
281795936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
28189860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,mycols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
281926fbe8dcSKarl Rupp     if (size == 1) {
282026fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
282126fbe8dcSKarl Rupp     }
282295936485SShri Abhyankar 
282395936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
282495936485SShri Abhyankar     for (i=1; i<size-1; i++) {
282595936485SShri Abhyankar       nz   = procsnz[i];
28269860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
282795936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
282895936485SShri Abhyankar     }
282995936485SShri Abhyankar     /* read in the stuff for the last proc */
283095936485SShri Abhyankar     if (size != 1) {
283195936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
28329860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
283395936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
283495936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
283595936485SShri Abhyankar     }
283695936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
283795936485SShri Abhyankar   } else {  /* procs[i], i>0 */
283895936485SShri Abhyankar     /* determine buffer space needed for message */
283995936485SShri Abhyankar     nz = 0;
284026fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2841785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
284295936485SShri Abhyankar     mycols = ibuf;
284395936485SShri Abhyankar     /* receive message of column indices*/
284495936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
284595936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
284695936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
284795936485SShri Abhyankar   }
284895936485SShri Abhyankar 
284995936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2850dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2851580bdb30SBarry Smith   ierr     = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
285295936485SShri Abhyankar   rowcount = 0;
285395936485SShri Abhyankar   nzcount  = 0;
285495936485SShri Abhyankar   for (i=0; i<mbs; i++) {
285595936485SShri Abhyankar     dcount  = 0;
285695936485SShri Abhyankar     odcount = 0;
285795936485SShri Abhyankar     for (j=0; j<bs; j++) {
285895936485SShri Abhyankar       kmax = locrowlens[rowcount];
285995936485SShri Abhyankar       for (k=0; k<kmax; k++) {
286095936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
286195936485SShri Abhyankar         if (!mask[tmp]) {
286295936485SShri Abhyankar           mask[tmp] = 1;
286395936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
286495936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
286595936485SShri Abhyankar         }
286695936485SShri Abhyankar       }
286795936485SShri Abhyankar       rowcount++;
286895936485SShri Abhyankar     }
286995936485SShri Abhyankar 
287095936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
287195936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
287295936485SShri Abhyankar 
287395936485SShri Abhyankar     /* zero out the mask elements we set */
287495936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
287595936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
287695936485SShri Abhyankar   }
287795936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
287895936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
28796816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
288095936485SShri Abhyankar 
288195936485SShri Abhyankar   if (!rank) {
2882785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
288395936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
288495936485SShri Abhyankar     nz     = procsnz[0];
288595936485SShri Abhyankar     vals   = buf;
288695936485SShri Abhyankar     mycols = ibuf;
288795936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
28889860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
288926fbe8dcSKarl Rupp     if (size == 1) {
289026fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
289126fbe8dcSKarl Rupp     }
289295936485SShri Abhyankar 
289395936485SShri Abhyankar     /* insert into matrix */
289495936485SShri Abhyankar     jj = rstart*bs;
289595936485SShri Abhyankar     for (i=0; i<m; i++) {
289695936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
289795936485SShri Abhyankar       mycols += locrowlens[i];
289895936485SShri Abhyankar       vals   += locrowlens[i];
289995936485SShri Abhyankar       jj++;
290095936485SShri Abhyankar     }
290195936485SShri Abhyankar 
290295936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
290395936485SShri Abhyankar     for (i=1; i<size-1; i++) {
290495936485SShri Abhyankar       nz   = procsnz[i];
290595936485SShri Abhyankar       vals = buf;
29069860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
290795936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
290895936485SShri Abhyankar     }
290995936485SShri Abhyankar     /* the last proc */
291095936485SShri Abhyankar     if (size != 1) {
291195936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
291295936485SShri Abhyankar       vals = buf;
29139860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
291495936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
291595936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
291695936485SShri Abhyankar     }
291795936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
291895936485SShri Abhyankar 
291995936485SShri Abhyankar   } else {
292095936485SShri Abhyankar     /* receive numeric values */
2921785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
292295936485SShri Abhyankar 
292395936485SShri Abhyankar     /* receive message of values*/
292495936485SShri Abhyankar     vals   = buf;
292595936485SShri Abhyankar     mycols = ibuf;
292695936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
292795936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
292895936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
292995936485SShri Abhyankar 
293095936485SShri Abhyankar     /* insert into matrix */
293195936485SShri Abhyankar     jj = rstart*bs;
293295936485SShri Abhyankar     for (i=0; i<m; i++) {
293395936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
293495936485SShri Abhyankar       mycols += locrowlens[i];
293595936485SShri Abhyankar       vals   += locrowlens[i];
293695936485SShri Abhyankar       jj++;
293795936485SShri Abhyankar     }
293895936485SShri Abhyankar   }
293995936485SShri Abhyankar 
294095936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
294195936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
294295936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
294395936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
294495936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
294595936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
294695936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
294795936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
294895936485SShri Abhyankar   PetscFunctionReturn(0);
294995936485SShri Abhyankar }
295095936485SShri Abhyankar 
2951dcf5cc72SBarry Smith /*XXXXX@
2952a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2953a30f8f8cSSatish Balay 
2954a30f8f8cSSatish Balay    Input Parameters:
2955a30f8f8cSSatish Balay .  mat  - the matrix
2956a30f8f8cSSatish Balay .  fact - factor
2957a30f8f8cSSatish Balay 
2958c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2959a30f8f8cSSatish Balay 
2960a30f8f8cSSatish Balay    Level: advanced
2961a30f8f8cSSatish Balay 
2962a30f8f8cSSatish Balay   Notes:
2963a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2964a30f8f8cSSatish Balay 
2965a30f8f8cSSatish Balay .seealso: MatSetOption()
2966dcf5cc72SBarry Smith @XXXXX*/
2967dcf5cc72SBarry Smith 
296824d5174aSHong Zhang 
2969985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
297024d5174aSHong Zhang {
297124d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2972f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2973ca54ac64SHong Zhang   PetscReal      atmp;
297487828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2975dfbe8321SBarry Smith   PetscErrorCode ierr;
29761302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
29771302d50aSBarry Smith   PetscMPIInt    rank,size;
29781302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
297987828ca2SBarry Smith   PetscScalar    *va;
29808a1c53f2SBarry Smith   MatScalar      *ba;
2981f4c0e9e4SHong Zhang   MPI_Status     stat;
298224d5174aSHong Zhang 
298324d5174aSHong Zhang   PetscFunctionBegin;
2984e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
29850298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
29861ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2987f4c0e9e4SHong Zhang 
2988ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2989ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2990f4c0e9e4SHong Zhang 
2991d0f46423SBarry Smith   bs  = A->rmap->bs;
2992f4c0e9e4SHong Zhang   mbs = a->mbs;
2993f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2994f4c0e9e4SHong Zhang   ba  = b->a;
2995f4c0e9e4SHong Zhang   bi  = b->i;
2996f4c0e9e4SHong Zhang   bj  = b->j;
2997f4c0e9e4SHong Zhang 
2998f4c0e9e4SHong Zhang   /* find ownerships */
2999d0f46423SBarry Smith   rowners_bs = A->rmap->range;
3000f4c0e9e4SHong Zhang 
3001f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
3002580bdb30SBarry Smith   ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr);
3003f4c0e9e4SHong Zhang 
3004f4c0e9e4SHong Zhang   /* row_max for B */
3005b8475685SHong Zhang   if (rank != size-1) {
3006f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
3007f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
3008f4c0e9e4SHong Zhang       brow  = bs*i;
3009f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
3010f4c0e9e4SHong Zhang         bcol = bs*(*bj);
3011f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
3012ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
301304d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
3014f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
3015f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
3016ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
3017ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
3018f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
3019f4c0e9e4SHong Zhang           }
3020f4c0e9e4SHong Zhang         }
3021f4c0e9e4SHong Zhang         bj++;
3022f4c0e9e4SHong Zhang       }
3023f4c0e9e4SHong Zhang     }
3024f4c0e9e4SHong Zhang 
3025f4c0e9e4SHong Zhang     /* send values to its owners */
3026f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
3027f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
3028ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
3029ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
3030ca54ac64SHong Zhang     }
3031f4c0e9e4SHong Zhang   }
3032f4c0e9e4SHong Zhang 
3033f4c0e9e4SHong Zhang   /* receive values */
3034ca54ac64SHong Zhang   if (rank) {
3035f4c0e9e4SHong Zhang     rvalues = work;
3036ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
3037f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
3038ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
3039f4c0e9e4SHong Zhang       /* process values */
3040f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
3041ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
3042f4c0e9e4SHong Zhang       }
3043f4c0e9e4SHong Zhang     }
3044ca54ac64SHong Zhang   }
3045f4c0e9e4SHong Zhang 
30461ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
3047ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
304824d5174aSHong Zhang   PetscFunctionReturn(0);
304924d5174aSHong Zhang }
30502798e883SHong Zhang 
305141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
30522798e883SHong Zhang {
30532798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
3054dfbe8321SBarry Smith   PetscErrorCode    ierr;
3055d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
30563649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
3057ffe4fb16SHong Zhang   Vec               bb1;
30583649974fSBarry Smith   const PetscScalar *b;
3059ffe4fb16SHong Zhang 
3060ffe4fb16SHong Zhang   PetscFunctionBegin;
3061e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3062e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
3063ffe4fb16SHong Zhang 
3064a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
306541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3066a2b30743SBarry Smith     PetscFunctionReturn(0);
3067a2b30743SBarry Smith   }
3068a2b30743SBarry Smith 
3069ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
3070ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
307141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
3072ffe4fb16SHong Zhang       its--;
3073ffe4fb16SHong Zhang     }
3074ffe4fb16SHong Zhang 
3075ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
3076ffe4fb16SHong Zhang     while (its--) {
3077ffe4fb16SHong Zhang 
3078ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
3079ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3080ffe4fb16SHong Zhang 
3081ffe4fb16SHong Zhang       /* copy xx into slvec0a */
30821ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
30831ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3084580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr);
30851ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
3086ffe4fb16SHong Zhang 
3087efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
3088ffe4fb16SHong Zhang 
3089ffe4fb16SHong Zhang       /* copy bb into slvec1a */
30901ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
30913649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
3092580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr);
30931ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
3094ffe4fb16SHong Zhang 
3095ffe4fb16SHong Zhang       /* set slvec1b = 0 */
3096fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3097ffe4fb16SHong Zhang 
3098ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
30991ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3100a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
3101ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3102ffe4fb16SHong Zhang 
3103ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
3104ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
3105ffe4fb16SHong Zhang 
3106ffe4fb16SHong Zhang       /* local diagonal sweep */
310741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
3108ffe4fb16SHong Zhang     }
31096bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
3110fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
311141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3112fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
311341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3114fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
3115fa22f6d0SBarry Smith     Vec               xx1;
3116ace3abfcSBarry Smith     PetscBool         hasop;
311720f1ed55SBarry Smith     const PetscScalar *diag;
3118887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
311920f1ed55SBarry Smith     PetscInt          i,n;
3120fa22f6d0SBarry Smith 
3121fa22f6d0SBarry Smith     if (!mat->xx1) {
3122fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
3123fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
3124fa22f6d0SBarry Smith     }
3125fa22f6d0SBarry Smith     xx1 = mat->xx1;
3126fa22f6d0SBarry Smith     bb1 = mat->bb1;
3127fa22f6d0SBarry Smith 
312841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
3129fa22f6d0SBarry Smith 
3130fa22f6d0SBarry Smith     if (!mat->diag) {
3131effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
31322a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
3133fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
3134fa22f6d0SBarry Smith     }
3135fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
3136fa22f6d0SBarry Smith 
3137fa22f6d0SBarry Smith     if (hasop) {
3138fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
3139887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
314020f1ed55SBarry Smith     } else {
314120f1ed55SBarry Smith       /*
314220f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
314320f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
3144887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
314520f1ed55SBarry Smith       */
314620f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
31473649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
31483649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
314920f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
315020f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
3151887ee2caSBarry Smith       if (omega == 1.0) {
315226fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
315320f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
3154887ee2caSBarry Smith       } else {
315526fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
3156887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
3157887ee2caSBarry Smith       }
315820f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
31593649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
31603649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
316120f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
316220f1ed55SBarry Smith     }
3163fa22f6d0SBarry Smith 
3164fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
3165fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3166fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3167fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
3168fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3169580bdb30SBarry Smith     ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
3170fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
3171fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3172fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3173fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3174effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
3175fa22f6d0SBarry Smith 
3176fa22f6d0SBarry Smith     /* local sweep */
317741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
3178fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
3179f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
3180ffe4fb16SHong Zhang   PetscFunctionReturn(0);
3181ffe4fb16SHong Zhang }
3182ffe4fb16SHong Zhang 
318341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
3184ffe4fb16SHong Zhang {
3185ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
3186dfbe8321SBarry Smith   PetscErrorCode ierr;
31872798e883SHong Zhang   Vec            lvec1,bb1;
31882798e883SHong Zhang 
31892798e883SHong Zhang   PetscFunctionBegin;
3190e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3191e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
31922798e883SHong Zhang 
3193c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
31942798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
319541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
31962798e883SHong Zhang       its--;
31972798e883SHong Zhang     }
31982798e883SHong Zhang 
31992798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
32002798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
32012798e883SHong Zhang     while (its--) {
3202ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32032798e883SHong Zhang 
32042798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
32052798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3206efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
32072798e883SHong Zhang 
3208ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32092798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3210ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32112798e883SHong Zhang 
32122798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3213efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
32142798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
32152798e883SHong Zhang 
3216ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32172798e883SHong Zhang 
3218c14dc6b6SHong Zhang       /* diagonal sweep */
321941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
32202798e883SHong Zhang     }
32216bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
32226bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
32236bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
32242798e883SHong Zhang   PetscFunctionReturn(0);
32252798e883SHong Zhang }
32262798e883SHong Zhang 
3227dfb205c3SBarry Smith /*@
3228dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3229dfb205c3SBarry Smith          CSR format the local rows.
3230dfb205c3SBarry Smith 
3231d083f849SBarry Smith    Collective
3232dfb205c3SBarry Smith 
3233dfb205c3SBarry Smith    Input Parameters:
3234dfb205c3SBarry Smith +  comm - MPI communicator
3235dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3236dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3237dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3238dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3239dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3240dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3241dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3242483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
3243dfb205c3SBarry Smith .   j - column indices
3244dfb205c3SBarry Smith -   a - matrix values
3245dfb205c3SBarry Smith 
3246dfb205c3SBarry Smith    Output Parameter:
3247dfb205c3SBarry Smith .   mat - the matrix
3248dfb205c3SBarry Smith 
3249dfb205c3SBarry Smith    Level: intermediate
3250dfb205c3SBarry Smith 
3251dfb205c3SBarry Smith    Notes:
3252dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3253dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3254dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3255dfb205c3SBarry Smith 
3256dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3257dfb205c3SBarry Smith 
3258dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
325969b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3260dfb205c3SBarry Smith @*/
32617087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3262dfb205c3SBarry Smith {
3263dfb205c3SBarry Smith   PetscErrorCode ierr;
3264dfb205c3SBarry Smith 
3265dfb205c3SBarry Smith 
3266dfb205c3SBarry Smith   PetscFunctionBegin;
3267f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3268dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3269dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3270dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3271dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3272dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3273dfb205c3SBarry Smith   PetscFunctionReturn(0);
3274dfb205c3SBarry Smith }
3275dfb205c3SBarry Smith 
3276dfb205c3SBarry Smith 
3277dfb205c3SBarry Smith /*@C
3278dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
3279dfb205c3SBarry Smith    (the default parallel PETSc format).
3280dfb205c3SBarry Smith 
3281d083f849SBarry Smith    Collective
3282dfb205c3SBarry Smith 
3283dfb205c3SBarry Smith    Input Parameters:
32841c4f3114SJed Brown +  B - the matrix
3285dfb205c3SBarry Smith .  bs - the block size
3286dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3287dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3288dfb205c3SBarry Smith -  v - optional values in the matrix
3289dfb205c3SBarry Smith 
3290dfb205c3SBarry Smith    Level: developer
3291dfb205c3SBarry Smith 
329269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3293dfb205c3SBarry Smith @*/
32947087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3295dfb205c3SBarry Smith {
32964ac538c5SBarry Smith   PetscErrorCode ierr;
3297dfb205c3SBarry Smith 
3298dfb205c3SBarry Smith   PetscFunctionBegin;
32994ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3300dfb205c3SBarry Smith   PetscFunctionReturn(0);
3301dfb205c3SBarry Smith }
3302dfb205c3SBarry Smith 
330310c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
33044dcd73b1SHong Zhang {
33054dcd73b1SHong Zhang   PetscErrorCode ierr;
330610c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
330710c56fdeSHong Zhang   PetscInt       *indx;
330810c56fdeSHong Zhang   PetscScalar    *values;
3309dfb205c3SBarry Smith 
33104dcd73b1SHong Zhang   PetscFunctionBegin;
33114dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
331210c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
331310c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
331410c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
331510c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
33164dcd73b1SHong Zhang 
331710c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
331810c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
331910c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
332010c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
332110c56fdeSHong Zhang     }
332210c56fdeSHong Zhang     /* Check sum(n) = Nbs */
3323b2566f29SBarry Smith     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
332410c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
332510c56fdeSHong Zhang 
332610c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
332710c56fdeSHong Zhang     rstart -= mbs;
33284dcd73b1SHong Zhang 
33294dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
333010c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3331e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
333210c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
33334dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
33344dcd73b1SHong Zhang       nnz  = nnz/bs;
33354dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
33364dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
33374dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
33384dcd73b1SHong Zhang     }
3339e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
33404dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
33414dcd73b1SHong Zhang 
33424dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
334310c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
33444dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
33454dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
33464dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
33474dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
33484dcd73b1SHong Zhang   }
33494dcd73b1SHong Zhang 
335010c56fdeSHong Zhang   /* numeric phase */
33514dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
335210c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
33534dcd73b1SHong Zhang 
3354e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
33554dcd73b1SHong Zhang   for (i=0; i<m; i++) {
33564dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
33574dcd73b1SHong Zhang     Ii   = i + rstart;
335810c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
33594dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
33604dcd73b1SHong Zhang   }
3361e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
336210c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
336310c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
33644dcd73b1SHong Zhang   PetscFunctionReturn(0);
33654dcd73b1SHong Zhang }
3366