xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 0880e06233d9681dd0ed22d6e02e81e220065bc9)
173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h"
5a30f8f8cSSatish Balay #include "mpisbaij.h"
6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
7a30f8f8cSSatish Balay 
8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat);
940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat);
11a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int);
12a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **);
1387828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *);
1487828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode);
1587828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat);
1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec);
22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2587828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
26a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
27a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
28a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
29a30f8f8cSSatish Balay    into the single precision data structures.
30a30f8f8cSSatish Balay */
31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
35a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
36a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
37a30f8f8cSSatish Balay #else
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
43a30f8f8cSSatish Balay #endif
44a30f8f8cSSatish Balay 
45a30f8f8cSSatish Balay EXTERN_C_BEGIN
464a2ae208SSatish Balay #undef __FUNCT__
474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
48a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat)
49a30f8f8cSSatish Balay {
50f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
51a30f8f8cSSatish Balay   int          ierr;
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay   PetscFunctionBegin;
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
56a30f8f8cSSatish Balay   PetscFunctionReturn(0);
57a30f8f8cSSatish Balay }
58a30f8f8cSSatish Balay EXTERN_C_END
59a30f8f8cSSatish Balay 
60a30f8f8cSSatish Balay EXTERN_C_BEGIN
614a2ae208SSatish Balay #undef __FUNCT__
624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
63a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat)
64a30f8f8cSSatish Balay {
65f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
66a30f8f8cSSatish Balay   int          ierr;
67a30f8f8cSSatish Balay 
68a30f8f8cSSatish Balay   PetscFunctionBegin;
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
71a30f8f8cSSatish Balay   PetscFunctionReturn(0);
72a30f8f8cSSatish Balay }
73a30f8f8cSSatish Balay EXTERN_C_END
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay /*
76a30f8f8cSSatish Balay      Local utility routine that creates a mapping from the global column
77a30f8f8cSSatish Balay    number to the local number in the off-diagonal part of the local
78a30f8f8cSSatish Balay    storage of the matrix.  This is done in a non scable way since the
79a30f8f8cSSatish Balay    length of colmap equals the global matrix length.
80a30f8f8cSSatish Balay */
814a2ae208SSatish Balay #undef __FUNCT__
824a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private"
83a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat)
84a30f8f8cSSatish Balay {
85a30f8f8cSSatish Balay   PetscFunctionBegin;
8629bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
8796e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
88a30f8f8cSSatish Balay }
89a30f8f8cSSatish Balay 
90a30f8f8cSSatish Balay #define CHUNKSIZE  10
91a30f8f8cSSatish Balay 
92a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
93a30f8f8cSSatish Balay { \
94a30f8f8cSSatish Balay  \
95a30f8f8cSSatish Balay     brow = row/bs;  \
96a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
97a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
98a30f8f8cSSatish Balay       bcol = col/bs; \
99a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
100a30f8f8cSSatish Balay       low = 0; high = nrow; \
101a30f8f8cSSatish Balay       while (high-low > 3) { \
102a30f8f8cSSatish Balay         t = (low+high)/2; \
103a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
104a30f8f8cSSatish Balay         else              low  = t; \
105a30f8f8cSSatish Balay       } \
106a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
107a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
108a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
109a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
110a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
111a30f8f8cSSatish Balay           else                    *bap  = value;  \
112a30f8f8cSSatish Balay           goto a_noinsert; \
113a30f8f8cSSatish Balay         } \
114a30f8f8cSSatish Balay       } \
115a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
11629bbc08cSBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
117a30f8f8cSSatish Balay       if (nrow >= rmax) { \
118a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
119a30f8f8cSSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
120a30f8f8cSSatish Balay         MatScalar *new_a; \
121a30f8f8cSSatish Balay  \
12229bbc08cSBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
123a30f8f8cSSatish Balay  \
124a30f8f8cSSatish Balay         /* malloc new storage space */ \
125a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \
12682502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
127a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
128a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
129a30f8f8cSSatish Balay  \
130a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
131a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
132a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
133a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
134a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
135a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
136a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
13787828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
138a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
139a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
140a30f8f8cSSatish Balay         /* free up old matrix storage */ \
141a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
142a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
143a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
144a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
145a30f8f8cSSatish Balay         } \
146a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
147a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
148a30f8f8cSSatish Balay  \
149a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
150a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
151b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
152a30f8f8cSSatish Balay         a->s_maxnz += bs2*CHUNKSIZE; \
153a30f8f8cSSatish Balay         a->reallocs++; \
154a30f8f8cSSatish Balay         a->s_nz++; \
155a30f8f8cSSatish Balay       } \
156a30f8f8cSSatish Balay       N = nrow++ - 1;  \
157a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
158a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
159a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
160a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
161a30f8f8cSSatish Balay       } \
162a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
163a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
164a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
165a30f8f8cSSatish Balay       a_noinsert:; \
166a30f8f8cSSatish Balay     ailen[brow] = nrow; \
167a30f8f8cSSatish Balay }
168a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
169a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
170a30f8f8cSSatish Balay { \
171a30f8f8cSSatish Balay     brow = row/bs;  \
172a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
173a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
174a30f8f8cSSatish Balay       bcol = col/bs; \
175a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
176a30f8f8cSSatish Balay       low = 0; high = nrow; \
177a30f8f8cSSatish Balay       while (high-low > 3) { \
178a30f8f8cSSatish Balay         t = (low+high)/2; \
179a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
180a30f8f8cSSatish Balay         else              low  = t; \
181a30f8f8cSSatish Balay       } \
182a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
183a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
184a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
185a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
186a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
187a30f8f8cSSatish Balay           else                    *bap  = value;  \
188a30f8f8cSSatish Balay           goto b_noinsert; \
189a30f8f8cSSatish Balay         } \
190a30f8f8cSSatish Balay       } \
191a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
19229bbc08cSBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
193a30f8f8cSSatish Balay       if (nrow >= rmax) { \
194a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
195a30f8f8cSSatish Balay         int       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
196a30f8f8cSSatish Balay         MatScalar *new_a; \
197a30f8f8cSSatish Balay  \
19829bbc08cSBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
199a30f8f8cSSatish Balay  \
200a30f8f8cSSatish Balay         /* malloc new storage space */ \
201a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \
20282502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
203a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
204a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
205a30f8f8cSSatish Balay  \
206a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
207a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
208a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
209a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
210a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
211a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
212a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
213a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
214a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
215a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
216a30f8f8cSSatish Balay         /* free up old matrix storage */ \
217a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
218a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
219a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
220a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
221a30f8f8cSSatish Balay         } \
222a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
223a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
224a30f8f8cSSatish Balay  \
225a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
226a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
227b0a32e0cSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
228a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
229a30f8f8cSSatish Balay         b->reallocs++; \
230a30f8f8cSSatish Balay         b->nz++; \
231a30f8f8cSSatish Balay       } \
232a30f8f8cSSatish Balay       N = nrow++ - 1;  \
233a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
234a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
235a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
236a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
237a30f8f8cSSatish Balay       } \
238a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
239a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
240a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
241a30f8f8cSSatish Balay       b_noinsert:; \
242a30f8f8cSSatish Balay     bilen[brow] = nrow; \
243a30f8f8cSSatish Balay }
244a30f8f8cSSatish Balay #endif
245a30f8f8cSSatish Balay 
246a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2474a2ae208SSatish Balay #undef __FUNCT__
2484a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
24987828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
250a30f8f8cSSatish Balay {
251a30f8f8cSSatish Balay   Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data;
252a30f8f8cSSatish Balay   int          ierr,i,N = m*n;
253a30f8f8cSSatish Balay   MatScalar    *vsingle;
254a30f8f8cSSatish Balay 
255a30f8f8cSSatish Balay   PetscFunctionBegin;
256a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
257a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
25882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
259a30f8f8cSSatish Balay     b->setvalueslen  = N;
260a30f8f8cSSatish Balay   }
261a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
262a30f8f8cSSatish Balay 
263a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
264a30f8f8cSSatish Balay     vsingle[i] = v[i];
265a30f8f8cSSatish Balay   }
266a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
267a30f8f8cSSatish Balay   PetscFunctionReturn(0);
268a30f8f8cSSatish Balay }
269a30f8f8cSSatish Balay 
2704a2ae208SSatish Balay #undef __FUNCT__
2714a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
27287828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
273a30f8f8cSSatish Balay {
274a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
275a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
276a30f8f8cSSatish Balay   MatScalar   *vsingle;
277a30f8f8cSSatish Balay 
278a30f8f8cSSatish Balay   PetscFunctionBegin;
279a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
280a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
28182502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
282a30f8f8cSSatish Balay     b->setvalueslen  = N;
283a30f8f8cSSatish Balay   }
284a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
285a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
286a30f8f8cSSatish Balay     vsingle[i] = v[i];
287a30f8f8cSSatish Balay   }
288a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
289a30f8f8cSSatish Balay   PetscFunctionReturn(0);
290a30f8f8cSSatish Balay }
291a30f8f8cSSatish Balay 
2924a2ae208SSatish Balay #undef __FUNCT__
2934a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
29487828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
295a30f8f8cSSatish Balay {
296a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
297a30f8f8cSSatish Balay   int         ierr,i,N = m*n;
298a30f8f8cSSatish Balay   MatScalar   *vsingle;
299a30f8f8cSSatish Balay 
300a30f8f8cSSatish Balay   PetscFunctionBegin;
30129bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3024d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
303a30f8f8cSSatish Balay }
304a30f8f8cSSatish Balay 
3054a2ae208SSatish Balay #undef __FUNCT__
3064a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
30787828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
308a30f8f8cSSatish Balay {
309a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
310a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
311a30f8f8cSSatish Balay   MatScalar   *vsingle;
312a30f8f8cSSatish Balay 
313a30f8f8cSSatish Balay   PetscFunctionBegin;
31429bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3154d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
316a30f8f8cSSatish Balay }
317a30f8f8cSSatish Balay #endif
318a30f8f8cSSatish Balay 
319a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
320a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
321a30f8f8cSSatish Balay */
3224a2ae208SSatish Balay #undef __FUNCT__
3234a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
324a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
325a30f8f8cSSatish Balay {
326a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
327a30f8f8cSSatish Balay   MatScalar    value;
328b5df2d14SHong Zhang   PetscTruth   roworiented = baij->roworiented;
329a30f8f8cSSatish Balay   int          ierr,i,j,row,col;
330b5df2d14SHong Zhang   int          rstart_orig=baij->rstart_bs;
331a30f8f8cSSatish Balay   int          rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
332a30f8f8cSSatish Balay   int          cend_orig=baij->cend_bs,bs=baij->bs;
333a30f8f8cSSatish Balay 
334a30f8f8cSSatish Balay   /* Some Variables required in the macro */
335a30f8f8cSSatish Balay   Mat          A = baij->A;
336a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data;
337a30f8f8cSSatish Balay   int          *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
338a30f8f8cSSatish Balay   MatScalar    *aa=a->a;
339a30f8f8cSSatish Balay 
340a30f8f8cSSatish Balay   Mat          B = baij->B;
341a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(B)->data;
342a30f8f8cSSatish Balay   int          *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
343a30f8f8cSSatish Balay   MatScalar    *ba=b->a;
344a30f8f8cSSatish Balay 
345a30f8f8cSSatish Balay   int          *rp,ii,nrow,_i,rmax,N,brow,bcol;
346a30f8f8cSSatish Balay   int          low,high,t,ridx,cidx,bs2=a->bs2;
347a30f8f8cSSatish Balay   MatScalar    *ap,*bap;
348a30f8f8cSSatish Balay 
349a30f8f8cSSatish Balay   /* for stash */
350f65c83cfSHong Zhang   int          n_loc, *in_loc=0;
351f65c83cfSHong Zhang   MatScalar    *v_loc=0;
352a30f8f8cSSatish Balay 
353a30f8f8cSSatish Balay   PetscFunctionBegin;
354a30f8f8cSSatish Balay 
355a30f8f8cSSatish Balay   if(!baij->donotstash){
35682502324SSatish Balay     ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr);
35782502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
358a30f8f8cSSatish Balay   }
359a30f8f8cSSatish Balay 
360a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
361a30f8f8cSSatish Balay     if (im[i] < 0) continue;
362a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
363b5df2d14SHong Zhang     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
364a30f8f8cSSatish Balay #endif
365a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
366a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
367a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
368f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
369a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
370a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
371a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
372a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
373a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
374a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
375a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
376a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
377a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
378b5df2d14SHong Zhang         else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");}
379a30f8f8cSSatish Balay #endif
380a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
381a30f8f8cSSatish Balay           if (mat->was_assembled) {
382a30f8f8cSSatish Balay             if (!baij->colmap) {
383a30f8f8cSSatish Balay               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
384a30f8f8cSSatish Balay             }
385a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
386a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
38771730473SSatish Balay             col  = col - 1;
388a30f8f8cSSatish Balay #else
38971730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
390a30f8f8cSSatish Balay #endif
391a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
392a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
393a30f8f8cSSatish Balay               col =  in[j];
394a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
395a30f8f8cSSatish Balay               B = baij->B;
396a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
397a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
398a30f8f8cSSatish Balay               ba=b->a;
39971730473SSatish Balay             } else col += in[j]%bs;
400a30f8f8cSSatish Balay           } else col = in[j];
401a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
402a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
403a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
404a30f8f8cSSatish Balay         }
405a30f8f8cSSatish Balay       }
406a30f8f8cSSatish Balay     } else {  /* off processor entry */
407a30f8f8cSSatish Balay       if (!baij->donotstash) {
408a30f8f8cSSatish Balay         n_loc = 0;
409a30f8f8cSSatish Balay         for (j=0; j<n; j++){
410f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
411a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
412a30f8f8cSSatish Balay           if (roworiented) {
413a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
414a30f8f8cSSatish Balay           } else {
415a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
416a30f8f8cSSatish Balay           }
417a30f8f8cSSatish Balay           n_loc++;
418a30f8f8cSSatish Balay         }
419a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       }
421a30f8f8cSSatish Balay     }
422a30f8f8cSSatish Balay   }
423a30f8f8cSSatish Balay 
424a30f8f8cSSatish Balay   if(!baij->donotstash){
425a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
426a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
427a30f8f8cSSatish Balay   }
428a30f8f8cSSatish Balay   PetscFunctionReturn(0);
429a30f8f8cSSatish Balay }
430a30f8f8cSSatish Balay 
4314a2ae208SSatish Balay #undef __FUNCT__
4324a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
433*0880e062SHong Zhang int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
434a30f8f8cSSatish Balay {
435*0880e062SHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
436*0880e062SHong Zhang   MatScalar    *value,*barray=baij->barray;
437*0880e062SHong Zhang   PetscTruth   roworiented = baij->roworiented;
438*0880e062SHong Zhang   int          ierr,i,j,ii,jj,row,col,rstart=baij->rstart;
439*0880e062SHong Zhang   int          rend=baij->rend,cstart=baij->cstart,stepval;
440*0880e062SHong Zhang   int          cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
441*0880e062SHong Zhang 
442a30f8f8cSSatish Balay   PetscFunctionBegin;
443*0880e062SHong Zhang   if(!barray) {
444*0880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
445*0880e062SHong Zhang     baij->barray = barray;
446*0880e062SHong Zhang   }
447*0880e062SHong Zhang 
448*0880e062SHong Zhang   if (roworiented) {
449*0880e062SHong Zhang     stepval = (n-1)*bs;
450*0880e062SHong Zhang   } else {
451*0880e062SHong Zhang     stepval = (m-1)*bs;
452*0880e062SHong Zhang   }
453*0880e062SHong Zhang   for (i=0; i<m; i++) {
454*0880e062SHong Zhang     if (im[i] < 0) continue;
455*0880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
456*0880e062SHong Zhang     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs);
457*0880e062SHong Zhang #endif
458*0880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
459*0880e062SHong Zhang       row = im[i] - rstart;
460*0880e062SHong Zhang       for (j=0; j<n; j++) {
461*0880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
462*0880e062SHong Zhang         if ((roworiented) && (n == 1)) {
463*0880e062SHong Zhang           barray = v + i*bs2;
464*0880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
465*0880e062SHong Zhang           barray = v + j*bs2;
466*0880e062SHong Zhang         } else { /* Here a copy is required */
467*0880e062SHong Zhang           if (roworiented) {
468*0880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
469*0880e062SHong Zhang           } else {
470*0880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
471*0880e062SHong Zhang           }
472*0880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
473*0880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
474*0880e062SHong Zhang               *barray++  = *value++;
475*0880e062SHong Zhang             }
476*0880e062SHong Zhang           }
477*0880e062SHong Zhang           barray -=bs2;
478*0880e062SHong Zhang         }
479*0880e062SHong Zhang 
480*0880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
481*0880e062SHong Zhang           col  = in[j] - cstart;
482*0880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
483*0880e062SHong Zhang         }
484*0880e062SHong Zhang         else if (in[j] < 0) continue;
485*0880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
486*0880e062SHong Zhang         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs);}
487*0880e062SHong Zhang #endif
488*0880e062SHong Zhang         else {
489*0880e062SHong Zhang           if (mat->was_assembled) {
490*0880e062SHong Zhang             if (!baij->colmap) {
491*0880e062SHong Zhang               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
492*0880e062SHong Zhang             }
493*0880e062SHong Zhang 
494*0880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
495*0880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
496*0880e062SHong Zhang             { int data;
497*0880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
498*0880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
499*0880e062SHong Zhang             }
500*0880e062SHong Zhang #else
501*0880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
502*0880e062SHong Zhang #endif
503*0880e062SHong Zhang #endif
504*0880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
505*0880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
506*0880e062SHong Zhang             col  = (col - 1)/bs;
507*0880e062SHong Zhang #else
508*0880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
509*0880e062SHong Zhang #endif
510*0880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
511*0880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
512*0880e062SHong Zhang               col =  in[j];
513*0880e062SHong Zhang             }
514*0880e062SHong Zhang           }
515*0880e062SHong Zhang           else col = in[j];
516*0880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
517*0880e062SHong Zhang         }
518*0880e062SHong Zhang       }
519*0880e062SHong Zhang     } else {
520*0880e062SHong Zhang       if (!baij->donotstash) {
521*0880e062SHong Zhang         if (roworiented) {
522*0880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
523*0880e062SHong Zhang         } else {
524*0880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
525*0880e062SHong Zhang         }
526*0880e062SHong Zhang       }
527*0880e062SHong Zhang     }
528*0880e062SHong Zhang   }
529*0880e062SHong Zhang   PetscFunctionReturn(0);
530a30f8f8cSSatish Balay }
531a30f8f8cSSatish Balay 
532a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
533a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
534a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
535a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
5364a2ae208SSatish Balay #undef __FUNCT__
5374a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
538a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
539a30f8f8cSSatish Balay {
540a30f8f8cSSatish Balay   PetscFunctionBegin;
54129bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
54296e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
543a30f8f8cSSatish Balay }
544a30f8f8cSSatish Balay 
5454a2ae208SSatish Balay #undef __FUNCT__
5464a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
547a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
548a30f8f8cSSatish Balay {
549a30f8f8cSSatish Balay   PetscFunctionBegin;
55029bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
55196e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
552a30f8f8cSSatish Balay }
553a30f8f8cSSatish Balay 
5544a2ae208SSatish Balay #undef __FUNCT__
5554a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
55687828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v)
557a30f8f8cSSatish Balay {
558f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
559a30f8f8cSSatish Balay   int          bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
560a30f8f8cSSatish Balay   int          bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
561a30f8f8cSSatish Balay 
562a30f8f8cSSatish Balay   PetscFunctionBegin;
563a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
56429bbc08cSBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
565b5df2d14SHong Zhang     if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
566a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
567a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
568a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
56929bbc08cSBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column");
570b5df2d14SHong Zhang         if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
571a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
572a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
573c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
574a30f8f8cSSatish Balay         } else {
575a30f8f8cSSatish Balay           if (!baij->colmap) {
576a30f8f8cSSatish Balay             ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
577a30f8f8cSSatish Balay           }
578a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
579a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
580a30f8f8cSSatish Balay           data --;
581a30f8f8cSSatish Balay #else
582a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
583a30f8f8cSSatish Balay #endif
584a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
585a30f8f8cSSatish Balay           else {
586a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
587c8407628SSatish Balay             ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
588a30f8f8cSSatish Balay           }
589a30f8f8cSSatish Balay         }
590a30f8f8cSSatish Balay       }
591a30f8f8cSSatish Balay     } else {
59229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
593a30f8f8cSSatish Balay     }
594a30f8f8cSSatish Balay   }
595a30f8f8cSSatish Balay  PetscFunctionReturn(0);
596a30f8f8cSSatish Balay }
597a30f8f8cSSatish Balay 
5984a2ae208SSatish Balay #undef __FUNCT__
5994a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
600a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
601a30f8f8cSSatish Balay {
602a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
603bc0ba53dSHong Zhang   /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */
604bc0ba53dSHong Zhang   /* Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ*)baij->B->data; */
605a30f8f8cSSatish Balay   int        ierr;
606a30f8f8cSSatish Balay   PetscReal  sum[2],*lnorm2;
607a30f8f8cSSatish Balay 
608a30f8f8cSSatish Balay   PetscFunctionBegin;
609a30f8f8cSSatish Balay   if (baij->size == 1) {
610a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
611a30f8f8cSSatish Balay   } else {
612a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
613f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
614a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
615a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
616a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
617a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
618a30f8f8cSSatish Balay       /*
619a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr);
620a30f8f8cSSatish Balay       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]);
621a30f8f8cSSatish Balay       */
622d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
623a30f8f8cSSatish Balay       /*
624a30f8f8cSSatish Balay       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]);
625a30f8f8cSSatish Balay       PetscSynchronizedFlush(PETSC_COMM_WORLD); */
626a30f8f8cSSatish Balay 
627a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
628a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
629a30f8f8cSSatish Balay     } else {
63029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
631a30f8f8cSSatish Balay     }
632a30f8f8cSSatish Balay   }
633a30f8f8cSSatish Balay   PetscFunctionReturn(0);
634a30f8f8cSSatish Balay }
635a30f8f8cSSatish Balay 
636a30f8f8cSSatish Balay /*
637a30f8f8cSSatish Balay   Creates the hash table, and sets the table
638a30f8f8cSSatish Balay   This table is created only once.
639a30f8f8cSSatish Balay   If new entried need to be added to the matrix
640a30f8f8cSSatish Balay   then the hash table has to be destroyed and
641a30f8f8cSSatish Balay   recreated.
642a30f8f8cSSatish Balay */
6434a2ae208SSatish Balay #undef __FUNCT__
6444a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
645a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
646a30f8f8cSSatish Balay {
647a30f8f8cSSatish Balay   PetscFunctionBegin;
64829bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
64996e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
650a30f8f8cSSatish Balay }
651a30f8f8cSSatish Balay 
6524a2ae208SSatish Balay #undef __FUNCT__
6534a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
654a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
655a30f8f8cSSatish Balay {
656a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
657a30f8f8cSSatish Balay   int         ierr,nstash,reallocs;
658a30f8f8cSSatish Balay   InsertMode  addv;
659a30f8f8cSSatish Balay 
660a30f8f8cSSatish Balay   PetscFunctionBegin;
661a30f8f8cSSatish Balay   if (baij->donotstash) {
662a30f8f8cSSatish Balay     PetscFunctionReturn(0);
663a30f8f8cSSatish Balay   }
664a30f8f8cSSatish Balay 
665a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
666a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
667a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
66829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
669a30f8f8cSSatish Balay   }
670a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
671a30f8f8cSSatish Balay 
672a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
673a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
674a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
675b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs);
676a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
677b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
678a30f8f8cSSatish Balay   PetscFunctionReturn(0);
679a30f8f8cSSatish Balay }
680a30f8f8cSSatish Balay 
6814a2ae208SSatish Balay #undef __FUNCT__
6824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
683a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
684a30f8f8cSSatish Balay {
685a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data;
686a30f8f8cSSatish Balay   Mat_SeqSBAIJ  *a=(Mat_SeqSBAIJ*)baij->A->data;
687a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b=(Mat_SeqBAIJ*)baij->B->data;
688a30f8f8cSSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
689a30f8f8cSSatish Balay   int         *row,*col,other_disassembled;
690a30f8f8cSSatish Balay   PetscTruth  r1,r2,r3;
691a30f8f8cSSatish Balay   MatScalar   *val;
692a30f8f8cSSatish Balay   InsertMode  addv = mat->insertmode;
6935222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES)
6945222a1afSHong Zhang   PetscTruth  flag;
6955222a1afSHong Zhang #endif
696a30f8f8cSSatish Balay 
697a30f8f8cSSatish Balay   PetscFunctionBegin;
698a30f8f8cSSatish Balay 
699a30f8f8cSSatish Balay   if (!baij->donotstash) {
700a30f8f8cSSatish Balay     while (1) {
701a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
702a30f8f8cSSatish Balay       /*
703a30f8f8cSSatish Balay       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg);
704a30f8f8cSSatish Balay       PetscSynchronizedFlush(PETSC_COMM_WORLD);
705a30f8f8cSSatish Balay       */
706a30f8f8cSSatish Balay       if (!flg) break;
707a30f8f8cSSatish Balay 
708a30f8f8cSSatish Balay       for (i=0; i<n;) {
709a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
710a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
711a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
712a30f8f8cSSatish Balay         else       ncols = n-i;
713a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
714a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
715a30f8f8cSSatish Balay         i = j;
716a30f8f8cSSatish Balay       }
717a30f8f8cSSatish Balay     }
718a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
719a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
720a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
721a30f8f8cSSatish Balay        restore the original flags */
722a30f8f8cSSatish Balay     r1 = baij->roworiented;
723a30f8f8cSSatish Balay     r2 = a->roworiented;
724a30f8f8cSSatish Balay     r3 = b->roworiented;
725a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
726a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
727a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
728a30f8f8cSSatish Balay     while (1) {
729a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
730a30f8f8cSSatish Balay       if (!flg) break;
731a30f8f8cSSatish Balay 
732a30f8f8cSSatish Balay       for (i=0; i<n;) {
733a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
734a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
735a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
736a30f8f8cSSatish Balay         else       ncols = n-i;
737a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
738a30f8f8cSSatish Balay         i = j;
739a30f8f8cSSatish Balay       }
740a30f8f8cSSatish Balay     }
741a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
742a30f8f8cSSatish Balay     baij->roworiented = r1;
743a30f8f8cSSatish Balay     a->roworiented    = r2;
744a30f8f8cSSatish Balay     b->roworiented    = r3;
745a30f8f8cSSatish Balay   }
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
748a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
749a30f8f8cSSatish Balay 
750a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
751a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
752a30f8f8cSSatish Balay   /*
753a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
754a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
755a30f8f8cSSatish Balay   */
756a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
757a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
758a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
759c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
760a30f8f8cSSatish Balay     }
761a30f8f8cSSatish Balay   }
762a30f8f8cSSatish Balay 
763a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
76440781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
765a30f8f8cSSatish Balay   }
766a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
767a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
768a30f8f8cSSatish Balay 
769a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
770a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
771f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
772a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
773a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
774a30f8f8cSSatish Balay   }
775a30f8f8cSSatish Balay #endif
776a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
777c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
778a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
779a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
780a30f8f8cSSatish Balay   }
781a30f8f8cSSatish Balay 
782a30f8f8cSSatish Balay   if (baij->rowvalues) {
783a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
784a30f8f8cSSatish Balay     baij->rowvalues = 0;
785a30f8f8cSSatish Balay   }
7865222a1afSHong Zhang 
7875222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES)
7882c535e4dSHong Zhang   ierr = PetscOptionsHasName(mat->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
7895222a1afSHong Zhang   if (flag) { ierr = MatUseSpooles_MPISBAIJ(mat);CHKERRQ(ierr); }
7905222a1afSHong Zhang #endif
791a30f8f8cSSatish Balay   PetscFunctionReturn(0);
792a30f8f8cSSatish Balay }
793a30f8f8cSSatish Balay 
7944a2ae208SSatish Balay #undef __FUNCT__
7954a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
796b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
797a30f8f8cSSatish Balay {
798a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
799fb9695e5SSatish Balay   int               ierr,bs = baij->bs,size = baij->size,rank = baij->rank;
800a30f8f8cSSatish Balay   PetscTruth        isascii,isdraw;
801b0a32e0cSBarry Smith   PetscViewer       sviewer;
802f3ef73ceSBarry Smith   PetscViewerFormat format;
803a30f8f8cSSatish Balay 
804a30f8f8cSSatish Balay   PetscFunctionBegin;
805b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
806fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
807a30f8f8cSSatish Balay   if (isascii) {
808b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
809456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
810a30f8f8cSSatish Balay       MatInfo info;
811a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
812a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
813b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
814b5df2d14SHong Zhang               rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
815a30f8f8cSSatish Balay               baij->bs,(int)info.memory);CHKERRQ(ierr);
816a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
817b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
818a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
819b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
820b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
821a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
822a30f8f8cSSatish Balay       PetscFunctionReturn(0);
823fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
824b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
825a30f8f8cSSatish Balay       PetscFunctionReturn(0);
826a30f8f8cSSatish Balay     }
827a30f8f8cSSatish Balay   }
828a30f8f8cSSatish Balay 
829a30f8f8cSSatish Balay   if (isdraw) {
830b0a32e0cSBarry Smith     PetscDraw       draw;
831a30f8f8cSSatish Balay     PetscTruth isnull;
832b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
833b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
834a30f8f8cSSatish Balay   }
835a30f8f8cSSatish Balay 
836a30f8f8cSSatish Balay   if (size == 1) {
837e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
838a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
839a30f8f8cSSatish Balay   } else {
840a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
841a30f8f8cSSatish Balay     Mat         A;
84265d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84365d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
844b5df2d14SHong Zhang     int         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
845a30f8f8cSSatish Balay     MatScalar   *a;
846a30f8f8cSSatish Balay 
847a30f8f8cSSatish Balay     if (!rank) {
848bc0ba53dSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
849a30f8f8cSSatish Balay     } else {
850f65c83cfSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
851a30f8f8cSSatish Balay     }
852b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
853a30f8f8cSSatish Balay 
854a30f8f8cSSatish Balay     /* copy over the A part */
85565d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
856a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
85782502324SSatish Balay     ierr  = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
858a30f8f8cSSatish Balay 
859a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
860a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
861a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
862a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
863a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
864a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
865a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
866a30f8f8cSSatish Balay           col++; a += bs;
867a30f8f8cSSatish Balay         }
868a30f8f8cSSatish Balay       }
869a30f8f8cSSatish Balay     }
870a30f8f8cSSatish Balay     /* copy over the B part */
87165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
87265d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
873a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
874a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
875a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
876a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
877a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
878a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
879a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
880a30f8f8cSSatish Balay           col++; a += bs;
881a30f8f8cSSatish Balay         }
882a30f8f8cSSatish Balay       }
883a30f8f8cSSatish Balay     }
884a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
885a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
886a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
887a30f8f8cSSatish Balay     /*
888a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
889b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
890a30f8f8cSSatish Balay     */
891b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
89265d70643SHong Zhang     if (!rank) {
893e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
894a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
895a30f8f8cSSatish Balay     }
896b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
897a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
898a30f8f8cSSatish Balay   }
899a30f8f8cSSatish Balay   PetscFunctionReturn(0);
900a30f8f8cSSatish Balay }
901a30f8f8cSSatish Balay 
9024a2ae208SSatish Balay #undef __FUNCT__
9034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
904b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
905a30f8f8cSSatish Balay {
906a30f8f8cSSatish Balay   int        ierr;
907a30f8f8cSSatish Balay   PetscTruth isascii,isdraw,issocket,isbinary;
908a30f8f8cSSatish Balay 
909a30f8f8cSSatish Balay   PetscFunctionBegin;
910b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
911fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
912b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
913fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
914a30f8f8cSSatish Balay   if (isascii || isdraw || issocket || isbinary) {
915a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
916a30f8f8cSSatish Balay   } else {
91729bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
918a30f8f8cSSatish Balay   }
919a30f8f8cSSatish Balay   PetscFunctionReturn(0);
920a30f8f8cSSatish Balay }
921a30f8f8cSSatish Balay 
9224a2ae208SSatish Balay #undef __FUNCT__
9234a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
924a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat)
925a30f8f8cSSatish Balay {
926a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
927a30f8f8cSSatish Balay   int         ierr;
928a30f8f8cSSatish Balay 
929a30f8f8cSSatish Balay   PetscFunctionBegin;
930a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
931b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N);
932a30f8f8cSSatish Balay #endif
933a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
934a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
935a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
936a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
937a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
938a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
939a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
940a30f8f8cSSatish Balay #else
941a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
942a30f8f8cSSatish Balay #endif
943a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
944a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
945a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
94640781036SHong Zhang   if (baij->slvec0) {
94740781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
94840781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
94940781036SHong Zhang   }
95040781036SHong Zhang   if (baij->slvec1) {
95140781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
95240781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
95340781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
95440781036SHong Zhang   }
95540781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
956a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
957a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
958a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
959a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
960a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
961a30f8f8cSSatish Balay #endif
962a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
963a30f8f8cSSatish Balay   PetscFunctionReturn(0);
964a30f8f8cSSatish Balay }
965a30f8f8cSSatish Balay 
9664a2ae208SSatish Balay #undef __FUNCT__
967a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
968a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
969a9d4b620SHong Zhang {
970a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
9714024bf32SHong Zhang   int         ierr,nt,mbs=a->mbs,bs=a->bs;
972a9d4b620SHong Zhang   PetscScalar *x,*from,zero=0.0;
973a9d4b620SHong Zhang 
974a9d4b620SHong Zhang   PetscFunctionBegin;
975a9d4b620SHong Zhang   /*
976a9d4b620SHong Zhang   PetscSynchronizedPrintf(PETSC_COMM_WORLD," _1comm is called ...\n");
977a9d4b620SHong Zhang   PetscSynchronizedFlush(PETSC_COMM_WORLD);
978a9d4b620SHong Zhang   */
979a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
980a9d4b620SHong Zhang   if (nt != A->n) {
981a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
982a9d4b620SHong Zhang   }
983a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
984a9d4b620SHong Zhang   if (nt != A->m) {
985a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
986a9d4b620SHong Zhang   }
987a9d4b620SHong Zhang 
988a9d4b620SHong Zhang   /* diagonal part */
989a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
990a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
991a9d4b620SHong Zhang 
992a9d4b620SHong Zhang   /* subdiagonal part */
993a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
994a9d4b620SHong Zhang 
995a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
996a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
997a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
998a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
999a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1000a9d4b620SHong Zhang 
1001a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1002a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1003a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1004a9d4b620SHong Zhang 
1005a9d4b620SHong Zhang   /* supperdiagonal part */
1006a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1007a9d4b620SHong Zhang 
1008a9d4b620SHong Zhang   PetscFunctionReturn(0);
1009a9d4b620SHong Zhang }
1010a9d4b620SHong Zhang 
1011a9d4b620SHong Zhang #undef __FUNCT__
101240781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
101340781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1014a30f8f8cSSatish Balay {
1015a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1016a30f8f8cSSatish Balay   int         ierr,nt;
1017a30f8f8cSSatish Balay 
1018a30f8f8cSSatish Balay   PetscFunctionBegin;
1019a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1020b5df2d14SHong Zhang   if (nt != A->n) {
102129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1022a30f8f8cSSatish Balay   }
1023a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1024b5df2d14SHong Zhang   if (nt != A->m) {
102529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1026a30f8f8cSSatish Balay   }
102765d70643SHong Zhang 
1028b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1029b941877fSHong Zhang   /* do diagonal part */
1030b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1031b941877fSHong Zhang   /* do supperdiagonal part */
1032b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1033b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1034b941877fSHong Zhang   /* do subdiagonal part */
1035b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1036b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1037b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
103865d70643SHong Zhang 
1039a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1040a30f8f8cSSatish Balay }
1041a30f8f8cSSatish Balay 
10424a2ae208SSatish Balay #undef __FUNCT__
10434a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1044a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1045a30f8f8cSSatish Balay {
1046de8b6608SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1047a9d4b620SHong Zhang   int          ierr,mbs=a->mbs,bs=a->bs;
1048a9d4b620SHong Zhang   PetscScalar  *x,*from,zero=0.0;
1049a9d4b620SHong Zhang 
1050a9d4b620SHong Zhang   PetscFunctionBegin;
1051a9d4b620SHong Zhang   /*
1052a9d4b620SHong Zhang   PetscSynchronizedPrintf(PETSC_COMM_WORLD," MatMultAdd is called ...\n");
1053a9d4b620SHong Zhang   PetscSynchronizedFlush(PETSC_COMM_WORLD);
1054a9d4b620SHong Zhang   */
1055a9d4b620SHong Zhang   /* diagonal part */
1056a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1057a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1058a9d4b620SHong Zhang 
1059a9d4b620SHong Zhang   /* subdiagonal part */
1060a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1061a9d4b620SHong Zhang 
1062a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
1063a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1064a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1065a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1066a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1067a9d4b620SHong Zhang 
1068a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1069a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1070a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1071a9d4b620SHong Zhang 
1072a9d4b620SHong Zhang   /* supperdiagonal part */
1073a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1074a9d4b620SHong Zhang 
1075a9d4b620SHong Zhang   PetscFunctionReturn(0);
1076a9d4b620SHong Zhang }
1077a9d4b620SHong Zhang 
1078a9d4b620SHong Zhang #undef __FUNCT__
1079a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1080a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1081a9d4b620SHong Zhang {
1082a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1083aa482183SHong Zhang   int        ierr;
1084a30f8f8cSSatish Balay 
1085a30f8f8cSSatish Balay   PetscFunctionBegin;
1086b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1087b941877fSHong Zhang   /* do diagonal part */
1088b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1089b941877fSHong Zhang   /* do supperdiagonal part */
1090b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1091de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1092de8b6608SHong Zhang 
1093b941877fSHong Zhang   /* do subdiagonal part */
1094a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1095a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1096a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1097aa482183SHong Zhang 
1098a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1099a30f8f8cSSatish Balay }
1100a30f8f8cSSatish Balay 
11014a2ae208SSatish Balay #undef __FUNCT__
11024a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1103a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1104a30f8f8cSSatish Balay {
1105a30f8f8cSSatish Balay   PetscFunctionBegin;
110629bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMult().");
110796e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1108a30f8f8cSSatish Balay }
1109a30f8f8cSSatish Balay 
11104a2ae208SSatish Balay #undef __FUNCT__
11114a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1112a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1113a30f8f8cSSatish Balay {
1114a30f8f8cSSatish Balay   PetscFunctionBegin;
111529bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMultAdd().");
111696e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1117a30f8f8cSSatish Balay }
1118a30f8f8cSSatish Balay 
1119a30f8f8cSSatish Balay /*
1120a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1121a30f8f8cSSatish Balay    diagonal block
1122a30f8f8cSSatish Balay */
11234a2ae208SSatish Balay #undef __FUNCT__
11244a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1125a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1126a30f8f8cSSatish Balay {
1127a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1128a30f8f8cSSatish Balay   int         ierr;
1129a30f8f8cSSatish Balay 
1130a30f8f8cSSatish Balay   PetscFunctionBegin;
113129bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1132a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1133a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1134a30f8f8cSSatish Balay }
1135a30f8f8cSSatish Balay 
11364a2ae208SSatish Balay #undef __FUNCT__
11374a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
113887828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A)
1139a30f8f8cSSatish Balay {
1140a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1141a30f8f8cSSatish Balay   int         ierr;
1142a30f8f8cSSatish Balay 
1143a30f8f8cSSatish Balay   PetscFunctionBegin;
1144a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1145a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1146a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1147a30f8f8cSSatish Balay }
1148a30f8f8cSSatish Balay 
11494a2ae208SSatish Balay #undef __FUNCT__
11504a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
115187828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
1152a30f8f8cSSatish Balay {
1153a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
115487828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1155a30f8f8cSSatish Balay   int            bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB;
1156a30f8f8cSSatish Balay   int            nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1157a30f8f8cSSatish Balay   int            *cmap,*idx_p,cstart = mat->cstart;
1158a30f8f8cSSatish Balay 
1159a30f8f8cSSatish Balay   PetscFunctionBegin;
116029bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1161a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1162a30f8f8cSSatish Balay 
1163a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1164a30f8f8cSSatish Balay     /*
1165a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1166a30f8f8cSSatish Balay     */
1167a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1168a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1169a30f8f8cSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1170a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1171a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1172a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1173a30f8f8cSSatish Balay     }
117487828ca2SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1175a30f8f8cSSatish Balay     mat->rowindices = (int*)(mat->rowvalues + max*bs2);
1176a30f8f8cSSatish Balay   }
1177a30f8f8cSSatish Balay 
117829bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1179a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1180a30f8f8cSSatish Balay 
1181a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1182a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1183a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1184a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1185a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1186a30f8f8cSSatish Balay   nztot = nzA + nzB;
1187a30f8f8cSSatish Balay 
1188a30f8f8cSSatish Balay   cmap  = mat->garray;
1189a30f8f8cSSatish Balay   if (v  || idx) {
1190a30f8f8cSSatish Balay     if (nztot) {
1191a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1192a30f8f8cSSatish Balay       int imark = -1;
1193a30f8f8cSSatish Balay       if (v) {
1194a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1195a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1196a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1197a30f8f8cSSatish Balay           else break;
1198a30f8f8cSSatish Balay         }
1199a30f8f8cSSatish Balay         imark = i;
1200a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1201a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1202a30f8f8cSSatish Balay       }
1203a30f8f8cSSatish Balay       if (idx) {
1204a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1205a30f8f8cSSatish Balay         if (imark > -1) {
1206a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1207a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1208a30f8f8cSSatish Balay           }
1209a30f8f8cSSatish Balay         } else {
1210a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1211a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1212a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1213a30f8f8cSSatish Balay             else break;
1214a30f8f8cSSatish Balay           }
1215a30f8f8cSSatish Balay           imark = i;
1216a30f8f8cSSatish Balay         }
1217a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1218a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1219a30f8f8cSSatish Balay       }
1220a30f8f8cSSatish Balay     } else {
1221a30f8f8cSSatish Balay       if (idx) *idx = 0;
1222a30f8f8cSSatish Balay       if (v)   *v   = 0;
1223a30f8f8cSSatish Balay     }
1224a30f8f8cSSatish Balay   }
1225a30f8f8cSSatish Balay   *nz = nztot;
1226a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1227a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1228a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1229a30f8f8cSSatish Balay }
1230a30f8f8cSSatish Balay 
12314a2ae208SSatish Balay #undef __FUNCT__
12324a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
123387828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
1234a30f8f8cSSatish Balay {
1235a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1236a30f8f8cSSatish Balay 
1237a30f8f8cSSatish Balay   PetscFunctionBegin;
1238a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
123929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1240a30f8f8cSSatish Balay   }
1241a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1242a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1243a30f8f8cSSatish Balay }
1244a30f8f8cSSatish Balay 
12454a2ae208SSatish Balay #undef __FUNCT__
12464a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ"
1247a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs)
1248a30f8f8cSSatish Balay {
1249a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1250a30f8f8cSSatish Balay 
1251a30f8f8cSSatish Balay   PetscFunctionBegin;
1252a30f8f8cSSatish Balay   *bs = baij->bs;
1253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1254a30f8f8cSSatish Balay }
1255a30f8f8cSSatish Balay 
12564a2ae208SSatish Balay #undef __FUNCT__
12574a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1258a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A)
1259a30f8f8cSSatish Balay {
1260a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data;
1261a30f8f8cSSatish Balay   int         ierr;
1262a30f8f8cSSatish Balay 
1263a30f8f8cSSatish Balay   PetscFunctionBegin;
1264a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1265a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1266a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1267a30f8f8cSSatish Balay }
1268a30f8f8cSSatish Balay 
12694a2ae208SSatish Balay #undef __FUNCT__
12704a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1271a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1272a30f8f8cSSatish Balay {
1273a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data;
1274a30f8f8cSSatish Balay   Mat         A = a->A,B = a->B;
1275a30f8f8cSSatish Balay   int         ierr;
1276a30f8f8cSSatish Balay   PetscReal   isend[5],irecv[5];
1277a30f8f8cSSatish Balay 
1278a30f8f8cSSatish Balay   PetscFunctionBegin;
1279f6275e2eSBarry Smith   info->block_size     = (PetscReal)a->bs;
1280a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1281a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1282a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1283a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1284a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1285a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1286a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1287a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1288a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1289a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1290a30f8f8cSSatish Balay     info->memory       = isend[3];
1291a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1292a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1293d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1294a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1295a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1296a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1297a30f8f8cSSatish Balay     info->memory       = irecv[3];
1298a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1299a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1300d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1301a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1302a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1303a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1304a30f8f8cSSatish Balay     info->memory       = irecv[3];
1305a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1306a30f8f8cSSatish Balay   } else {
130729bbc08cSBarry Smith     SETERRQ1(1,"Unknown MatInfoType argument %d",flag);
1308a30f8f8cSSatish Balay   }
1309f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1310f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1311f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1312f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1313a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1314a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1315a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1316a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1317a30f8f8cSSatish Balay }
1318a30f8f8cSSatish Balay 
13194a2ae208SSatish Balay #undef __FUNCT__
13204a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1321a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op)
1322a30f8f8cSSatish Balay {
1323a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1324a30f8f8cSSatish Balay   int         ierr;
1325a30f8f8cSSatish Balay 
1326a30f8f8cSSatish Balay   PetscFunctionBegin;
1327e98b92d7SKris Buschelman   switch (op) {
1328e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1329e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1330e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1331e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1332e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1333e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1334e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1335a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1336a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1337e98b92d7SKris Buschelman     break;
1338e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1339a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1340a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1341a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1342e98b92d7SKris Buschelman     break;
1343e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1344e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1345e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1346d03495bdSKris Buschelman   case MAT_USE_SINGLE_PRECISION_SOLVES:
1347b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1348e98b92d7SKris Buschelman     break;
1349e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1350a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1351a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1352a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1353e98b92d7SKris Buschelman     break;
1354e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1355a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1356e98b92d7SKris Buschelman     break;
1357e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
135829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1359e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1360a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1361e98b92d7SKris Buschelman     break;
1362e98b92d7SKris Buschelman   default:
136329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1364a30f8f8cSSatish Balay   }
1365a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1366a30f8f8cSSatish Balay }
1367a30f8f8cSSatish Balay 
13684a2ae208SSatish Balay #undef __FUNCT__
13698115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
13708115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B)
1371a30f8f8cSSatish Balay {
13728115998fSBarry Smith   int ierr;
1373a30f8f8cSSatish Balay   PetscFunctionBegin;
1374999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13758115998fSBarry Smith   PetscFunctionReturn(0);
1376a30f8f8cSSatish Balay }
1377a30f8f8cSSatish Balay 
13784a2ae208SSatish Balay #undef __FUNCT__
13794a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1380a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1381a30f8f8cSSatish Balay {
1382a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1383a30f8f8cSSatish Balay   Mat         a = baij->A,b = baij->B;
1384a30f8f8cSSatish Balay   int         ierr,s1,s2,s3;
1385a30f8f8cSSatish Balay 
1386a30f8f8cSSatish Balay   PetscFunctionBegin;
1387a30f8f8cSSatish Balay   if (ll != rr) {
138829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1389a30f8f8cSSatish Balay   }
1390a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1391a30f8f8cSSatish Balay   if (rr) {
1392a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
139329bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1394a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1395a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1396a30f8f8cSSatish Balay     /*} if (ll) { */
1397a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
139829bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1399a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1400a30f8f8cSSatish Balay     /* } */
1401a30f8f8cSSatish Balay   /* scale  the diagonal block */
1402a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1403a30f8f8cSSatish Balay 
1404a30f8f8cSSatish Balay   /* if (rr) { */
1405a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1406a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1407a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1408a30f8f8cSSatish Balay   }
1409a30f8f8cSSatish Balay 
1410a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1411a30f8f8cSSatish Balay }
1412a30f8f8cSSatish Balay 
14134a2ae208SSatish Balay #undef __FUNCT__
14144a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
141587828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag)
1416a30f8f8cSSatish Balay {
1417a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1418a30f8f8cSSatish Balay   int            i,ierr,N,*rows,*owners = l->rowners,size = l->size;
141935d8aa7fSBarry Smith   int            *procs,*nprocs,j,idx,nsends,*work,row;
1420a30f8f8cSSatish Balay   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
1421a30f8f8cSSatish Balay   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
1422a30f8f8cSSatish Balay   int            *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs;
1423a30f8f8cSSatish Balay   MPI_Comm       comm = A->comm;
1424a30f8f8cSSatish Balay   MPI_Request    *send_waits,*recv_waits;
1425a30f8f8cSSatish Balay   MPI_Status     recv_status,*send_status;
1426a30f8f8cSSatish Balay   IS             istmp;
142735d8aa7fSBarry Smith   PetscTruth     found;
1428a30f8f8cSSatish Balay 
1429a30f8f8cSSatish Balay   PetscFunctionBegin;
1430a30f8f8cSSatish Balay   ierr = ISGetSize(is,&N);CHKERRQ(ierr);
1431a30f8f8cSSatish Balay   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
1432a30f8f8cSSatish Balay 
1433a30f8f8cSSatish Balay   /*  first count number of contributors to each processor */
143482502324SSatish Balay   ierr  = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr);
1435a30f8f8cSSatish Balay   ierr  = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr);
1436a30f8f8cSSatish Balay   procs = nprocs + size;
1437b0a32e0cSBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/
1438a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
1439a30f8f8cSSatish Balay     idx   = rows[i];
144035d8aa7fSBarry Smith     found = PETSC_FALSE;
1441a30f8f8cSSatish Balay     for (j=0; j<size; j++) {
1442a30f8f8cSSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
144335d8aa7fSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break;
1444a30f8f8cSSatish Balay       }
1445a30f8f8cSSatish Balay     }
144629bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
1447a30f8f8cSSatish Balay   }
1448a30f8f8cSSatish Balay   nsends = 0;  for (i=0; i<size; i++) { nsends += procs[i];}
1449a30f8f8cSSatish Balay 
1450a30f8f8cSSatish Balay   /* inform other processors of number of messages and max length*/
145182502324SSatish Balay   ierr   = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr);
1452a30f8f8cSSatish Balay   ierr   = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr);
1453a30f8f8cSSatish Balay   nmax   = work[rank];
1454a30f8f8cSSatish Balay   nrecvs = work[size+rank];
1455a30f8f8cSSatish Balay   ierr   = PetscFree(work);CHKERRQ(ierr);
1456a30f8f8cSSatish Balay 
1457a30f8f8cSSatish Balay   /* post receives:   */
1458b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr);
1459b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
1460a30f8f8cSSatish Balay   for (i=0; i<nrecvs; i++) {
1461a30f8f8cSSatish Balay     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
1462a30f8f8cSSatish Balay   }
1463a30f8f8cSSatish Balay 
1464a30f8f8cSSatish Balay   /* do sends:
1465a30f8f8cSSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
1466a30f8f8cSSatish Balay      the ith processor
1467a30f8f8cSSatish Balay   */
1468b0a32e0cSBarry Smith   ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr);
1469b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1470b0a32e0cSBarry Smith   ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr);
1471a30f8f8cSSatish Balay   starts[0]  = 0;
1472a30f8f8cSSatish Balay   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
1473a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
1474a30f8f8cSSatish Balay     svalues[starts[owner[i]]++] = rows[i];
1475a30f8f8cSSatish Balay   }
1476a30f8f8cSSatish Balay   ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr);
1477a30f8f8cSSatish Balay 
1478a30f8f8cSSatish Balay   starts[0] = 0;
1479a30f8f8cSSatish Balay   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
1480a30f8f8cSSatish Balay   count = 0;
1481a30f8f8cSSatish Balay   for (i=0; i<size; i++) {
1482a30f8f8cSSatish Balay     if (procs[i]) {
1483a30f8f8cSSatish Balay       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
1484a30f8f8cSSatish Balay     }
1485a30f8f8cSSatish Balay   }
1486a30f8f8cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
1487a30f8f8cSSatish Balay 
1488a30f8f8cSSatish Balay   base = owners[rank]*bs;
1489a30f8f8cSSatish Balay 
1490a30f8f8cSSatish Balay   /*  wait on receives */
1491b0a32e0cSBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr);
1492a30f8f8cSSatish Balay   source = lens + nrecvs;
1493a30f8f8cSSatish Balay   count  = nrecvs; slen = 0;
1494a30f8f8cSSatish Balay   while (count) {
1495a30f8f8cSSatish Balay     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
1496a30f8f8cSSatish Balay     /* unpack receives into our local space */
1497a30f8f8cSSatish Balay     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
1498a30f8f8cSSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
1499a30f8f8cSSatish Balay     lens[imdex]    = n;
1500a30f8f8cSSatish Balay     slen          += n;
1501a30f8f8cSSatish Balay     count--;
1502a30f8f8cSSatish Balay   }
1503a30f8f8cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
1504a30f8f8cSSatish Balay 
1505a30f8f8cSSatish Balay   /* move the data into the send scatter */
1506b0a32e0cSBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr);
1507a30f8f8cSSatish Balay   count = 0;
1508a30f8f8cSSatish Balay   for (i=0; i<nrecvs; i++) {
1509a30f8f8cSSatish Balay     values = rvalues + i*nmax;
1510a30f8f8cSSatish Balay     for (j=0; j<lens[i]; j++) {
1511a30f8f8cSSatish Balay       lrows[count++] = values[j] - base;
1512a30f8f8cSSatish Balay     }
1513a30f8f8cSSatish Balay   }
1514a30f8f8cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1515a30f8f8cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1516a30f8f8cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1517a30f8f8cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
1518a30f8f8cSSatish Balay 
1519a30f8f8cSSatish Balay   /* actually zap the local rows */
1520a30f8f8cSSatish Balay   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
1521b0a32e0cSBarry Smith   PetscLogObjectParent(A,istmp);
1522a30f8f8cSSatish Balay 
1523a30f8f8cSSatish Balay   /*
1524a30f8f8cSSatish Balay         Zero the required rows. If the "diagonal block" of the matrix
1525a30f8f8cSSatish Balay      is square and the user wishes to set the diagonal we use seperate
1526a30f8f8cSSatish Balay      code so that MatSetValues() is not called for each diagonal allocating
1527a30f8f8cSSatish Balay      new memory, thus calling lots of mallocs and slowing things down.
1528a30f8f8cSSatish Balay 
1529a30f8f8cSSatish Balay        Contributed by: Mathew Knepley
1530a30f8f8cSSatish Balay   */
1531a30f8f8cSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1532ff64ff16SBarry Smith   ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr);
1533a30f8f8cSSatish Balay   if (diag && (l->A->M == l->A->N)) {
1534a30f8f8cSSatish Balay     ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr);
1535a30f8f8cSSatish Balay   } else if (diag) {
1536a30f8f8cSSatish Balay     ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1537a30f8f8cSSatish Balay     if (((Mat_SeqSBAIJ*)l->A->data)->nonew) {
153829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1539a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
1540a30f8f8cSSatish Balay     }
1541a30f8f8cSSatish Balay     for (i=0; i<slen; i++) {
1542a30f8f8cSSatish Balay       row  = lrows[i] + rstart_bs;
1543a30f8f8cSSatish Balay       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
1544a30f8f8cSSatish Balay     }
1545a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1546a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1547a30f8f8cSSatish Balay   } else {
1548a30f8f8cSSatish Balay     ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1549a30f8f8cSSatish Balay   }
1550a30f8f8cSSatish Balay 
1551a30f8f8cSSatish Balay   ierr = ISDestroy(istmp);CHKERRQ(ierr);
1552a30f8f8cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1553a30f8f8cSSatish Balay 
1554a30f8f8cSSatish Balay   /* wait on sends */
1555a30f8f8cSSatish Balay   if (nsends) {
155682502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1557a30f8f8cSSatish Balay     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1558a30f8f8cSSatish Balay     ierr        = PetscFree(send_status);CHKERRQ(ierr);
1559a30f8f8cSSatish Balay   }
1560a30f8f8cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1561a30f8f8cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
1562a30f8f8cSSatish Balay 
1563a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1564a30f8f8cSSatish Balay }
1565a30f8f8cSSatish Balay 
15664a2ae208SSatish Balay #undef __FUNCT__
15674a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1568a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A)
1569a30f8f8cSSatish Balay {
1570a30f8f8cSSatish Balay   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1571a30f8f8cSSatish Balay   MPI_Comm    comm = A->comm;
1572a30f8f8cSSatish Balay   static int  called = 0;
1573a30f8f8cSSatish Balay   int         ierr;
1574a30f8f8cSSatish Balay 
1575a30f8f8cSSatish Balay   PetscFunctionBegin;
1576a30f8f8cSSatish Balay   if (!a->rank) {
1577a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1578a30f8f8cSSatish Balay   }
1579a30f8f8cSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1580a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1581a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1582a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1583a30f8f8cSSatish Balay }
1584a30f8f8cSSatish Balay 
15854a2ae208SSatish Balay #undef __FUNCT__
15864a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1587a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A)
1588a30f8f8cSSatish Balay {
1589f3566a2aSHong Zhang   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1590a30f8f8cSSatish Balay   int         ierr;
1591a30f8f8cSSatish Balay 
1592a30f8f8cSSatish Balay   PetscFunctionBegin;
1593a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1594a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1595a30f8f8cSSatish Balay }
1596a30f8f8cSSatish Balay 
1597a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1598a30f8f8cSSatish Balay 
15994a2ae208SSatish Balay #undef __FUNCT__
16004a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1601a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1602a30f8f8cSSatish Balay {
1603a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1604a30f8f8cSSatish Balay   Mat         a,b,c,d;
1605a30f8f8cSSatish Balay   PetscTruth  flg;
1606a30f8f8cSSatish Balay   int         ierr;
1607a30f8f8cSSatish Balay 
1608a30f8f8cSSatish Balay   PetscFunctionBegin;
1609b5df2d14SHong Zhang   ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr);
1610b5df2d14SHong Zhang   if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type");
1611a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1612a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1613a30f8f8cSSatish Balay 
1614a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1615a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1616a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1617a30f8f8cSSatish Balay   }
1618a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1619a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1620a30f8f8cSSatish Balay }
1621a30f8f8cSSatish Balay 
16224a2ae208SSatish Balay #undef __FUNCT__
16234a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1624273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A)
1625273d9f13SBarry Smith {
1626273d9f13SBarry Smith   int        ierr;
1627273d9f13SBarry Smith 
1628273d9f13SBarry Smith   PetscFunctionBegin;
1629273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1630273d9f13SBarry Smith   PetscFunctionReturn(0);
1631273d9f13SBarry Smith }
1632a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1633a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1634a30f8f8cSSatish Balay   MatSetValues_MPISBAIJ,
1635a30f8f8cSSatish Balay   MatGetRow_MPISBAIJ,
1636a30f8f8cSSatish Balay   MatRestoreRow_MPISBAIJ,
1637a9d4b620SHong Zhang   MatMult_MPISBAIJ,
1638a30f8f8cSSatish Balay   MatMultAdd_MPISBAIJ,
1639a30f8f8cSSatish Balay   MatMultTranspose_MPISBAIJ,
1640a30f8f8cSSatish Balay   MatMultTransposeAdd_MPISBAIJ,
1641a30f8f8cSSatish Balay   0,
1642a30f8f8cSSatish Balay   0,
1643a30f8f8cSSatish Balay   0,
1644a30f8f8cSSatish Balay   0,
1645a30f8f8cSSatish Balay   0,
1646a30f8f8cSSatish Balay   0,
16472798e883SHong Zhang   MatRelax_MPISBAIJ,
1648a30f8f8cSSatish Balay   MatTranspose_MPISBAIJ,
1649a30f8f8cSSatish Balay   MatGetInfo_MPISBAIJ,
1650a30f8f8cSSatish Balay   MatEqual_MPISBAIJ,
1651a30f8f8cSSatish Balay   MatGetDiagonal_MPISBAIJ,
1652a30f8f8cSSatish Balay   MatDiagonalScale_MPISBAIJ,
1653a30f8f8cSSatish Balay   MatNorm_MPISBAIJ,
1654a30f8f8cSSatish Balay   MatAssemblyBegin_MPISBAIJ,
1655a30f8f8cSSatish Balay   MatAssemblyEnd_MPISBAIJ,
1656a30f8f8cSSatish Balay   0,
1657a30f8f8cSSatish Balay   MatSetOption_MPISBAIJ,
1658a30f8f8cSSatish Balay   MatZeroEntries_MPISBAIJ,
1659a30f8f8cSSatish Balay   MatZeroRows_MPISBAIJ,
1660a30f8f8cSSatish Balay   0,
1661a30f8f8cSSatish Balay   0,
1662a30f8f8cSSatish Balay   0,
1663a30f8f8cSSatish Balay   0,
1664273d9f13SBarry Smith   MatSetUpPreallocation_MPISBAIJ,
1665b5df2d14SHong Zhang   0,
1666a30f8f8cSSatish Balay   0,
1667a30f8f8cSSatish Balay   0,
1668a30f8f8cSSatish Balay   0,
1669a30f8f8cSSatish Balay   MatDuplicate_MPISBAIJ,
1670a30f8f8cSSatish Balay   0,
1671a30f8f8cSSatish Balay   0,
1672a30f8f8cSSatish Balay   0,
1673a30f8f8cSSatish Balay   0,
1674a30f8f8cSSatish Balay   0,
1675a30f8f8cSSatish Balay   MatGetSubMatrices_MPISBAIJ,
1676a30f8f8cSSatish Balay   MatIncreaseOverlap_MPISBAIJ,
1677a30f8f8cSSatish Balay   MatGetValues_MPISBAIJ,
1678a30f8f8cSSatish Balay   0,
1679a30f8f8cSSatish Balay   MatPrintHelp_MPISBAIJ,
1680a30f8f8cSSatish Balay   MatScale_MPISBAIJ,
1681a30f8f8cSSatish Balay   0,
1682a30f8f8cSSatish Balay   0,
1683a30f8f8cSSatish Balay   0,
1684a30f8f8cSSatish Balay   MatGetBlockSize_MPISBAIJ,
1685a30f8f8cSSatish Balay   0,
1686a30f8f8cSSatish Balay   0,
1687a30f8f8cSSatish Balay   0,
1688a30f8f8cSSatish Balay   0,
1689a30f8f8cSSatish Balay   0,
1690a30f8f8cSSatish Balay   0,
1691a30f8f8cSSatish Balay   MatSetUnfactored_MPISBAIJ,
1692a30f8f8cSSatish Balay   0,
1693a30f8f8cSSatish Balay   MatSetValuesBlocked_MPISBAIJ,
1694a30f8f8cSSatish Balay   0,
1695a30f8f8cSSatish Balay   0,
1696a30f8f8cSSatish Balay   0,
16978a124369SBarry Smith   MatGetPetscMaps_Petsc,
169824d5174aSHong Zhang   0,
169924d5174aSHong Zhang   0,
170024d5174aSHong Zhang   0,
170124d5174aSHong Zhang   0,
170224d5174aSHong Zhang   0,
170324d5174aSHong Zhang   0,
170424d5174aSHong Zhang   MatGetRowMax_MPISBAIJ};
1705a30f8f8cSSatish Balay 
1706a30f8f8cSSatish Balay 
1707a30f8f8cSSatish Balay EXTERN_C_BEGIN
17084a2ae208SSatish Balay #undef __FUNCT__
17094a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1710a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1711a30f8f8cSSatish Balay {
1712a30f8f8cSSatish Balay   PetscFunctionBegin;
1713a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1714a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1715a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1716a30f8f8cSSatish Balay }
1717a30f8f8cSSatish Balay EXTERN_C_END
1718a30f8f8cSSatish Balay 
1719273d9f13SBarry Smith EXTERN_C_BEGIN
17204a2ae208SSatish Balay #undef __FUNCT__
17214a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1722b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B)
1723b5df2d14SHong Zhang {
1724b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1725ca54ac64SHong Zhang   int          ierr;
1726b5df2d14SHong Zhang   PetscTruth   flg;
1727b5df2d14SHong Zhang 
1728b5df2d14SHong Zhang   PetscFunctionBegin;
1729b5df2d14SHong Zhang 
1730b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1731b0a32e0cSBarry Smith   B->data = (void*)b;
1732b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1733b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1734b5df2d14SHong Zhang 
1735b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1736b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1737b5df2d14SHong Zhang   B->mapping    = 0;
1738b5df2d14SHong Zhang   B->factor     = 0;
1739b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1740b5df2d14SHong Zhang 
1741b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1742b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1743b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1744b5df2d14SHong Zhang 
1745b5df2d14SHong Zhang   /* build local table of row and column ownerships */
174682502324SSatish Balay   ierr          = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1747273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1748273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
1749b0a32e0cSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1750b5df2d14SHong Zhang 
1751b5df2d14SHong Zhang   /* build cache for off array entries formed */
1752b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1753b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1754b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1755b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1756b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1757b5df2d14SHong Zhang 
1758f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1759b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
176064a35ccbSBarry Smith   b->setvalueslen     = 0;
1761b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1762b5df2d14SHong Zhang #endif
1763b5df2d14SHong Zhang 
1764b5df2d14SHong Zhang   /* stuff used in block assembly */
1765b5df2d14SHong Zhang   b->barray       = 0;
1766b5df2d14SHong Zhang 
1767b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1768b5df2d14SHong Zhang   b->lvec         = 0;
1769b5df2d14SHong Zhang   b->Mvctx        = 0;
177040781036SHong Zhang   b->slvec0       = 0;
177140781036SHong Zhang   b->slvec0b      = 0;
177240781036SHong Zhang   b->slvec1       = 0;
177340781036SHong Zhang   b->slvec1a      = 0;
177440781036SHong Zhang   b->slvec1b      = 0;
177540781036SHong Zhang   b->sMvctx       = 0;
1776b5df2d14SHong Zhang 
1777b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1778b5df2d14SHong Zhang   b->rowindices   = 0;
1779b5df2d14SHong Zhang   b->rowvalues    = 0;
1780b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1781b5df2d14SHong Zhang 
1782b5df2d14SHong Zhang   /* hash table stuff */
1783b5df2d14SHong Zhang   b->ht           = 0;
1784b5df2d14SHong Zhang   b->hd           = 0;
1785b5df2d14SHong Zhang   b->ht_size      = 0;
1786b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1787b5df2d14SHong Zhang   b->ht_fact      = 0;
1788b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1789b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1790b5df2d14SHong Zhang 
1791e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1792b5df2d14SHong Zhang   if (flg) {
1793f6275e2eSBarry Smith     PetscReal fact = 1.39;
1794b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1795e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1796b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1797b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1798b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1799b5df2d14SHong Zhang   }
1800b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1801b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1802b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1803b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1804b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1805b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1806b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1807b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1808b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1809b5df2d14SHong Zhang   PetscFunctionReturn(0);
1810b5df2d14SHong Zhang }
1811273d9f13SBarry Smith EXTERN_C_END
1812b5df2d14SHong Zhang 
18134a2ae208SSatish Balay #undef __FUNCT__
18144a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1815b5df2d14SHong Zhang /*@C
1816b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1817b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1818b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1819b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1820b5df2d14SHong Zhang 
1821b5df2d14SHong Zhang    Collective on Mat
1822b5df2d14SHong Zhang 
1823b5df2d14SHong Zhang    Input Parameters:
1824b5df2d14SHong Zhang +  A - the matrix
1825b5df2d14SHong Zhang .  bs   - size of blockk
1826b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1827b5df2d14SHong Zhang            submatrix  (same for all local rows)
1828b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18296d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18306d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18316d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1832b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1833b5df2d14SHong Zhang            submatrix (same for all local rows).
1834b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1835b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1836b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1837b5df2d14SHong Zhang 
1838b5df2d14SHong Zhang 
1839b5df2d14SHong Zhang    Options Database Keys:
1840b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1841b5df2d14SHong Zhang                      block calculations (much slower)
1842b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1843b5df2d14SHong Zhang 
1844b5df2d14SHong Zhang    Notes:
1845b5df2d14SHong Zhang 
1846b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1847b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1848b5df2d14SHong Zhang 
1849b5df2d14SHong Zhang    Storage Information:
1850b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1851b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1852b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1853b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1854b5df2d14SHong Zhang 
1855b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1856b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1857b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1858b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1859b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1860b5df2d14SHong Zhang 
1861b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1862b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang .vb
1865b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1866b5df2d14SHong Zhang           -------------------
1867b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1868b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1869b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1870b5df2d14SHong Zhang           -------------------
1871b5df2d14SHong Zhang .ve
1872b5df2d14SHong Zhang 
1873b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1874b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18756d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18766d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1877b5df2d14SHong Zhang 
18786d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18796d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1880b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1881b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1882b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1883b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1884b5df2d14SHong Zhang    matrices.
1885b5df2d14SHong Zhang 
1886b5df2d14SHong Zhang    Level: intermediate
1887b5df2d14SHong Zhang 
1888b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1889b5df2d14SHong Zhang 
1890b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1891b5df2d14SHong Zhang @*/
1892b5df2d14SHong Zhang 
1893b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
1894b5df2d14SHong Zhang {
1895b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1896eb7adc28SSatish Balay   int          ierr,i,mbs,Mbs;
1897273d9f13SBarry Smith   PetscTruth   flg2;
1898b5df2d14SHong Zhang 
1899b5df2d14SHong Zhang   PetscFunctionBegin;
1900273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr);
1901273d9f13SBarry Smith   if (!flg2) PetscFunctionReturn(0);
1902273d9f13SBarry Smith 
1903e82a3eeeSBarry Smith   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1904b5df2d14SHong Zhang 
1905b5df2d14SHong Zhang   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1906435da068SBarry Smith   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1907435da068SBarry Smith   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1908435da068SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
1909435da068SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
1910b5df2d14SHong Zhang   if (d_nnz) {
1911b5df2d14SHong Zhang     for (i=0; i<B->m/bs; i++) {
1912b5df2d14SHong Zhang       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
1913b5df2d14SHong Zhang     }
1914b5df2d14SHong Zhang   }
1915b5df2d14SHong Zhang   if (o_nnz) {
1916b5df2d14SHong Zhang     for (i=0; i<B->m/bs; i++) {
1917b5df2d14SHong Zhang       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
1918b5df2d14SHong Zhang     }
1919b5df2d14SHong Zhang   }
192019138431SHong Zhang   B->preallocated = PETSC_TRUE;
192119138431SHong Zhang   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
192219138431SHong Zhang   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
19238a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
19248a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1925b5df2d14SHong Zhang 
1926b5df2d14SHong Zhang   b   = (Mat_MPISBAIJ*)B->data;
1927b5df2d14SHong Zhang   mbs = B->m/bs;
1928b5df2d14SHong Zhang   Mbs = B->M/bs;
1929b5df2d14SHong Zhang   if (mbs*bs != B->m) {
193019138431SHong Zhang     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs);
1931b5df2d14SHong Zhang   }
1932b5df2d14SHong Zhang 
1933b5df2d14SHong Zhang   b->bs  = bs;
1934b5df2d14SHong Zhang   b->bs2 = bs*bs;
1935b5df2d14SHong Zhang   b->mbs = mbs;
1936b5df2d14SHong Zhang   b->nbs = mbs;
1937b5df2d14SHong Zhang   b->Mbs = Mbs;
1938b5df2d14SHong Zhang   b->Nbs = Mbs;
1939b5df2d14SHong Zhang 
1940b5df2d14SHong Zhang   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
1941b5df2d14SHong Zhang   b->rowners[0]    = 0;
1942b5df2d14SHong Zhang   for (i=2; i<=b->size; i++) {
1943b5df2d14SHong Zhang     b->rowners[i] += b->rowners[i-1];
1944b5df2d14SHong Zhang   }
1945b5df2d14SHong Zhang   b->rstart    = b->rowners[b->rank];
1946b5df2d14SHong Zhang   b->rend      = b->rowners[b->rank+1];
1947b5df2d14SHong Zhang   b->cstart    = b->rstart;
1948b5df2d14SHong Zhang   b->cend      = b->rend;
1949b5df2d14SHong Zhang   for (i=0; i<=b->size; i++) {
1950b5df2d14SHong Zhang     b->rowners_bs[i] = b->rowners[i]*bs;
1951b5df2d14SHong Zhang   }
1952b5df2d14SHong Zhang   b->rstart_bs = b-> rstart*bs;
1953b5df2d14SHong Zhang   b->rend_bs   = b->rend*bs;
1954b5df2d14SHong Zhang 
1955b5df2d14SHong Zhang   b->cstart_bs = b->cstart*bs;
1956b5df2d14SHong Zhang   b->cend_bs   = b->cend*bs;
1957b5df2d14SHong Zhang 
1958b5df2d14SHong Zhang 
1959b5df2d14SHong Zhang   ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
1960b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->A);
1961b5df2d14SHong Zhang   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
1962b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->B);
1963b5df2d14SHong Zhang 
1964b5df2d14SHong Zhang   /* build cache for off array entries formed */
1965b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1966b5df2d14SHong Zhang 
1967b5df2d14SHong Zhang   PetscFunctionReturn(0);
1968b5df2d14SHong Zhang }
1969b5df2d14SHong Zhang 
19704a2ae208SSatish Balay #undef __FUNCT__
19714a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1972a30f8f8cSSatish Balay /*@C
1973a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1974a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1975a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1976a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1977a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1978a30f8f8cSSatish Balay 
1979a30f8f8cSSatish Balay    Collective on MPI_Comm
1980a30f8f8cSSatish Balay 
1981a30f8f8cSSatish Balay    Input Parameters:
1982a30f8f8cSSatish Balay +  comm - MPI communicator
1983a30f8f8cSSatish Balay .  bs   - size of blockk
1984a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1985a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1986a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1987a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1988a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1989a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1990a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1991a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1992a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1993a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1994a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19956d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19966d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19976d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1998a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1999a30f8f8cSSatish Balay            submatrix (same for all local rows).
2000a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2001a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
2002a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
2003a30f8f8cSSatish Balay 
2004a30f8f8cSSatish Balay    Output Parameter:
2005a30f8f8cSSatish Balay .  A - the matrix
2006a30f8f8cSSatish Balay 
2007a30f8f8cSSatish Balay    Options Database Keys:
2008a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2009a30f8f8cSSatish Balay                      block calculations (much slower)
2010a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2011a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2012a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2013a30f8f8cSSatish Balay 
2014a30f8f8cSSatish Balay    Notes:
2015a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2016a30f8f8cSSatish Balay    (possibly both).
2017a30f8f8cSSatish Balay 
2018a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2019a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2020a30f8f8cSSatish Balay 
2021a30f8f8cSSatish Balay    Storage Information:
2022a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2023a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2024a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2025a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2026a30f8f8cSSatish Balay 
2027a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2028a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
2029a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2030a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2031a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2032a30f8f8cSSatish Balay 
2033a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2034a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2035a30f8f8cSSatish Balay 
2036a30f8f8cSSatish Balay .vb
2037a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2038a30f8f8cSSatish Balay           -------------------
2039a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
2040a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2041a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2042a30f8f8cSSatish Balay           -------------------
2043a30f8f8cSSatish Balay .ve
2044a30f8f8cSSatish Balay 
2045a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2046a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20476d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20486d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2049a30f8f8cSSatish Balay 
20506d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20516d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2052a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2053a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2054a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2055a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2056a30f8f8cSSatish Balay    matrices.
2057a30f8f8cSSatish Balay 
2058a30f8f8cSSatish Balay    Level: intermediate
2059a30f8f8cSSatish Balay 
2060a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2061a30f8f8cSSatish Balay 
2062a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2063a30f8f8cSSatish Balay @*/
2064a30f8f8cSSatish Balay 
2065a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
2066a30f8f8cSSatish Balay {
2067273d9f13SBarry Smith   int ierr,size;
2068a30f8f8cSSatish Balay 
2069a30f8f8cSSatish Balay   PetscFunctionBegin;
2070b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2071273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2072273d9f13SBarry Smith   if (size > 1) {
2073b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2074b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2075273d9f13SBarry Smith   } else {
2076273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2077273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2078273d9f13SBarry Smith   }
2079a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2080a30f8f8cSSatish Balay }
2081a30f8f8cSSatish Balay 
2082a30f8f8cSSatish Balay 
20834a2ae208SSatish Balay #undef __FUNCT__
20844a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
2085a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2086a30f8f8cSSatish Balay {
2087a30f8f8cSSatish Balay   Mat          mat;
2088a30f8f8cSSatish Balay   Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2089a30f8f8cSSatish Balay   int          ierr,len=0;
2090a30f8f8cSSatish Balay 
2091a30f8f8cSSatish Balay   PetscFunctionBegin;
2092a30f8f8cSSatish Balay   *newmat       = 0;
2093b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2094b5df2d14SHong Zhang   ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr);
2095273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
2096b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2097a30f8f8cSSatish Balay   a->bs  = oldmat->bs;
2098a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2099a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2100a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2101a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2102a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2103a30f8f8cSSatish Balay 
2104a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
2105a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
2106a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
2107a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
2108a30f8f8cSSatish Balay   a->size         = oldmat->size;
2109a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2110a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2111a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2112a30f8f8cSSatish Balay   a->rowindices   = 0;
2113a30f8f8cSSatish Balay   a->rowvalues    = 0;
2114a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2115a30f8f8cSSatish Balay   a->barray       = 0;
2116a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
2117a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
2118a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
2119a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
2120a30f8f8cSSatish Balay 
2121a30f8f8cSSatish Balay   /* hash table stuff */
2122a30f8f8cSSatish Balay   a->ht           = 0;
2123a30f8f8cSSatish Balay   a->hd           = 0;
2124a30f8f8cSSatish Balay   a->ht_size      = 0;
2125a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2126a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2127a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2128a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2129a30f8f8cSSatish Balay 
213082502324SSatish Balay   ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr);
2131b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
2132a30f8f8cSSatish Balay   a->cowners    = a->rowners + a->size + 2;
2133a30f8f8cSSatish Balay   a->rowners_bs = a->cowners + a->size + 2;
2134a30f8f8cSSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
2135a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2136a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
2137a30f8f8cSSatish Balay   if (oldmat->colmap) {
2138a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2139a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2140a30f8f8cSSatish Balay #else
214182502324SSatish Balay     ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr);
2142b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2143a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
2144a30f8f8cSSatish Balay #endif
2145a30f8f8cSSatish Balay   } else a->colmap = 0;
2146a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
214782502324SSatish Balay     ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr);
2148b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
2149a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
2150a30f8f8cSSatish Balay   } else a->garray = 0;
2151a30f8f8cSSatish Balay 
2152a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2153b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2154a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2155a30f8f8cSSatish Balay 
2156b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
2157a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2158b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2159a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2160b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2161b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2162a30f8f8cSSatish Balay   *newmat = mat;
2163a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2164a30f8f8cSSatish Balay }
2165a30f8f8cSSatish Balay 
2166a30f8f8cSSatish Balay #include "petscsys.h"
2167a30f8f8cSSatish Balay 
2168273d9f13SBarry Smith EXTERN_C_BEGIN
21694a2ae208SSatish Balay #undef __FUNCT__
21704a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2171b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat)
2172a30f8f8cSSatish Balay {
2173a30f8f8cSSatish Balay   Mat          A;
2174a30f8f8cSSatish Balay   int          i,nz,ierr,j,rstart,rend,fd;
217587828ca2SBarry Smith   PetscScalar  *vals,*buf;
2176a30f8f8cSSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
2177a30f8f8cSSatish Balay   MPI_Status   status;
2178a30f8f8cSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
2179a30f8f8cSSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
2180a30f8f8cSSatish Balay   int          tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
2181a30f8f8cSSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2182a30f8f8cSSatish Balay   int          dcount,kmax,k,nzcount,tmp;
2183a30f8f8cSSatish Balay 
2184a30f8f8cSSatish Balay   PetscFunctionBegin;
2185b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2186a30f8f8cSSatish Balay 
2187a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2188a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   if (!rank) {
2190b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2191a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2192552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2193a30f8f8cSSatish Balay     if (header[3] < 0) {
219429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2195a30f8f8cSSatish Balay     }
2196a30f8f8cSSatish Balay   }
2197a30f8f8cSSatish Balay 
2198a30f8f8cSSatish Balay   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
2199a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2200a30f8f8cSSatish Balay 
220129bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2202a30f8f8cSSatish Balay 
2203a30f8f8cSSatish Balay   /*
2204a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2205a30f8f8cSSatish Balay      divisible by the blocksize
2206a30f8f8cSSatish Balay   */
2207a30f8f8cSSatish Balay   Mbs        = M/bs;
2208a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2209a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2210a30f8f8cSSatish Balay   else                  Mbs++;
2211a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2212b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2213a30f8f8cSSatish Balay   }
2214a30f8f8cSSatish Balay 
2215a30f8f8cSSatish Balay   /* determine ownership of all rows */
2216a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2217a30f8f8cSSatish Balay   m          = mbs*bs;
2218b0a32e0cSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
2219a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2220a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay   rowners[0] = 0;
2222a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2223a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2224a30f8f8cSSatish Balay   rstart = rowners[rank];
2225a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2226a30f8f8cSSatish Balay 
2227a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
222882502324SSatish Balay   ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr);
2229a30f8f8cSSatish Balay   if (!rank) {
2230b0a32e0cSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2232a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
223382502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
2234a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2235a30f8f8cSSatish Balay     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2236a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2237a30f8f8cSSatish Balay   } else {
2238a30f8f8cSSatish Balay     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2239a30f8f8cSSatish Balay   }
2240a30f8f8cSSatish Balay 
22410222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2242a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
224382502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
2244a30f8f8cSSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
2245a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2246a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2247a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2248a30f8f8cSSatish Balay       }
2249a30f8f8cSSatish Balay     }
2250a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2251a30f8f8cSSatish Balay 
2252a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2253a30f8f8cSSatish Balay     maxnz = 0;
2254a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2255a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2256a30f8f8cSSatish Balay     }
225782502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay 
2259a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2260a30f8f8cSSatish Balay     nz     = procsnz[0];
226182502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2262a30f8f8cSSatish Balay     mycols = ibuf;
2263a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2264a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2266a30f8f8cSSatish Balay 
2267a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2268a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2269a30f8f8cSSatish Balay       nz   = procsnz[i];
2270a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2271a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
2272a30f8f8cSSatish Balay     }
2273a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2274a30f8f8cSSatish Balay     if (size != 1) {
2275a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2276a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2277a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2278a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
2279a30f8f8cSSatish Balay     }
2280a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22810222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2282a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2283a30f8f8cSSatish Balay     nz = 0;
2284a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2285a30f8f8cSSatish Balay       nz += locrowlens[i];
2286a30f8f8cSSatish Balay     }
228782502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2288a30f8f8cSSatish Balay     mycols = ibuf;
2289a30f8f8cSSatish Balay     /* receive message of column indices*/
2290a30f8f8cSSatish Balay     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2291a30f8f8cSSatish Balay     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
229229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2293a30f8f8cSSatish Balay   }
2294a30f8f8cSSatish Balay 
2295a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
229682502324SSatish Balay   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr);
2297a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
229882502324SSatish Balay   ierr     = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr);
2299a30f8f8cSSatish Balay   ierr     = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
2300a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2301a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2302a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2303a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2304a30f8f8cSSatish Balay     dcount  = 0;
2305a30f8f8cSSatish Balay     odcount = 0;
2306a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2307a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2308a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
23090222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2310a30f8f8cSSatish Balay         if (!mask[tmp]) {
2311a30f8f8cSSatish Balay           mask[tmp] = 1;
23120222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23130222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2314a30f8f8cSSatish Balay         }
2315a30f8f8cSSatish Balay       }
2316a30f8f8cSSatish Balay       rowcount++;
2317a30f8f8cSSatish Balay     }
2318a30f8f8cSSatish Balay 
23190222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23200222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2321a30f8f8cSSatish Balay 
2322a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2323a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2324a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2325a30f8f8cSSatish Balay   }
2326a30f8f8cSSatish Balay 
2327a30f8f8cSSatish Balay   /* create our matrix */
23287e06b45fSHong Zhang   ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat);
2329bfe19f1aSHong Zhang   CHKERRQ(ierr);
2330a30f8f8cSSatish Balay   A = *newmat;
2331273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2332a30f8f8cSSatish Balay 
2333a30f8f8cSSatish Balay   if (!rank) {
233487828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2335a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2336a30f8f8cSSatish Balay     nz = procsnz[0];
2337a30f8f8cSSatish Balay     vals = buf;
2338a30f8f8cSSatish Balay     mycols = ibuf;
2339a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2340a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2341a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2342a30f8f8cSSatish Balay 
2343a30f8f8cSSatish Balay     /* insert into matrix */
2344a30f8f8cSSatish Balay     jj      = rstart*bs;
2345a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23467e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2347a30f8f8cSSatish Balay       mycols += locrowlens[i];
2348a30f8f8cSSatish Balay       vals   += locrowlens[i];
2349a30f8f8cSSatish Balay       jj++;
2350a30f8f8cSSatish Balay     }
23517e06b45fSHong Zhang 
2352a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2353a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2354a30f8f8cSSatish Balay       nz   = procsnz[i];
2355a30f8f8cSSatish Balay       vals = buf;
2356a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2357a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2358a30f8f8cSSatish Balay     }
2359a30f8f8cSSatish Balay     /* the last proc */
2360a30f8f8cSSatish Balay     if (size != 1){
2361a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2362a30f8f8cSSatish Balay       vals = buf;
2363a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2364a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2365a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2366a30f8f8cSSatish Balay     }
2367a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23687e06b45fSHong Zhang 
2369a30f8f8cSSatish Balay   } else {
2370a30f8f8cSSatish Balay     /* receive numeric values */
237187828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2372a30f8f8cSSatish Balay 
2373a30f8f8cSSatish Balay     /* receive message of values*/
2374a30f8f8cSSatish Balay     vals   = buf;
2375a30f8f8cSSatish Balay     mycols = ibuf;
2376a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2377a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
237829bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2379a30f8f8cSSatish Balay 
2380a30f8f8cSSatish Balay     /* insert into matrix */
2381a30f8f8cSSatish Balay     jj      = rstart*bs;
2382a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2383a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2384a30f8f8cSSatish Balay       mycols += locrowlens[i];
2385a30f8f8cSSatish Balay       vals   += locrowlens[i];
2386a30f8f8cSSatish Balay       jj++;
2387a30f8f8cSSatish Balay     }
2388a30f8f8cSSatish Balay   }
23897e06b45fSHong Zhang 
2390a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2391a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2392a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2393a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2394a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2395a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2396a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2397a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2398a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2399a30f8f8cSSatish Balay }
2400273d9f13SBarry Smith EXTERN_C_END
2401a30f8f8cSSatish Balay 
24024a2ae208SSatish Balay #undef __FUNCT__
24034a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2404a30f8f8cSSatish Balay /*@
2405a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2406a30f8f8cSSatish Balay 
2407a30f8f8cSSatish Balay    Input Parameters:
2408a30f8f8cSSatish Balay .  mat  - the matrix
2409a30f8f8cSSatish Balay .  fact - factor
2410a30f8f8cSSatish Balay 
2411a30f8f8cSSatish Balay    Collective on Mat
2412a30f8f8cSSatish Balay 
2413a30f8f8cSSatish Balay    Level: advanced
2414a30f8f8cSSatish Balay 
2415a30f8f8cSSatish Balay   Notes:
2416a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2417a30f8f8cSSatish Balay 
2418a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2419a30f8f8cSSatish Balay 
2420a30f8f8cSSatish Balay .seealso: MatSetOption()
2421a30f8f8cSSatish Balay @*/
2422a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2423a30f8f8cSSatish Balay {
2424a30f8f8cSSatish Balay   PetscFunctionBegin;
242529bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
242696e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2427a30f8f8cSSatish Balay }
242824d5174aSHong Zhang 
24294a2ae208SSatish Balay #undef __FUNCT__
24304a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
243124d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v)
243224d5174aSHong Zhang {
243324d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
2434f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(a->B)->data;
2435ca54ac64SHong Zhang   PetscReal    atmp;
243687828ca2SBarry Smith   PetscReal    *work,*svalues,*rvalues;
2437ca54ac64SHong Zhang   int          ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
2438154bba0bSHong Zhang   int          rank,size,*rowners_bs,dest,count,source;
243987828ca2SBarry Smith   PetscScalar  *va;
24408a1c53f2SBarry Smith   MatScalar    *ba;
2441f4c0e9e4SHong Zhang   MPI_Status   stat;
244224d5174aSHong Zhang 
244324d5174aSHong Zhang   PetscFunctionBegin;
2444d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
2445f4c0e9e4SHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2446f4c0e9e4SHong Zhang 
2447ac355199SBarry Smith   ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr);
2448ac355199SBarry Smith   ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr);
2449f4c0e9e4SHong Zhang 
2450f4c0e9e4SHong Zhang   bs   = a->bs;
2451f4c0e9e4SHong Zhang   mbs  = a->mbs;
2452f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2453f4c0e9e4SHong Zhang   ba   = b->a;
2454f4c0e9e4SHong Zhang   bi   = b->i;
2455f4c0e9e4SHong Zhang   bj   = b->j;
2456ca54ac64SHong Zhang   /*
2457f4c0e9e4SHong Zhang   PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs);
2458f4c0e9e4SHong Zhang   PetscSynchronizedFlush(PETSC_COMM_WORLD);
2459ca54ac64SHong Zhang   */
2460f4c0e9e4SHong Zhang 
2461f4c0e9e4SHong Zhang   /* find ownerships */
2462f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2463f4c0e9e4SHong Zhang   /*
246404d41228SHong Zhang   if (!rank){
246504d41228SHong Zhang     for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]);
2466f4c0e9e4SHong Zhang   }
2467f4c0e9e4SHong Zhang   */
2468f4c0e9e4SHong Zhang 
2469f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
247082502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2471ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2472f4c0e9e4SHong Zhang 
2473f4c0e9e4SHong Zhang   /* row_max for B */
2474b8475685SHong Zhang   if (rank != size-1){
2475f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2476f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2477f4c0e9e4SHong Zhang       brow  = bs*i;
2478f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2479f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2480f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2481ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
248204d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2483ca54ac64SHong Zhang           /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */
2484f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2485f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2486ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2487f4c0e9e4SHong Zhang             /* printf("val[%d,%d]: %g\n",row,col,atmp); */
2488ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2489f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2490f4c0e9e4SHong Zhang           }
2491f4c0e9e4SHong Zhang         }
2492f4c0e9e4SHong Zhang         bj++;
2493f4c0e9e4SHong Zhang       }
2494f4c0e9e4SHong Zhang     }
249504d41228SHong Zhang     /*
249604d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank);
249704d41228SHong Zhang       for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]);
249804d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d]: \n");
249904d41228SHong Zhang       */
2500f4c0e9e4SHong Zhang 
2501f4c0e9e4SHong Zhang     /* send values to its owners */
2502f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2503f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2504ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2505d7d1e502SBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr);
2506ca54ac64SHong Zhang       /*
250704d41228SHong Zhang       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]);
2508f4c0e9e4SHong Zhang       PetscSynchronizedFlush(PETSC_COMM_WORLD);
2509ca54ac64SHong Zhang       */
2510ca54ac64SHong Zhang     }
2511f4c0e9e4SHong Zhang   }
2512f4c0e9e4SHong Zhang 
2513f4c0e9e4SHong Zhang   /* receive values */
2514ca54ac64SHong Zhang   if (rank){
2515f4c0e9e4SHong Zhang     rvalues = work;
2516ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2517f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
2518d7d1e502SBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr);
2519f4c0e9e4SHong Zhang       /* process values */
2520f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2521ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2522f4c0e9e4SHong Zhang       }
2523ca54ac64SHong Zhang       /*
252404d41228SHong Zhang       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]);
2525f4c0e9e4SHong Zhang       PetscSynchronizedFlush(PETSC_COMM_WORLD);
2526ca54ac64SHong Zhang       */
2527f4c0e9e4SHong Zhang     }
2528ca54ac64SHong Zhang   }
2529f4c0e9e4SHong Zhang 
2530f4c0e9e4SHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2531ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
253224d5174aSHong Zhang   PetscFunctionReturn(0);
253324d5174aSHong Zhang }
25342798e883SHong Zhang 
25352798e883SHong Zhang #undef __FUNCT__
25362798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
2537c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
25382798e883SHong Zhang {
25392798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2540ffe4fb16SHong Zhang   int            ierr,mbs=mat->mbs,bs=mat->bs;
2541ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2542ffe4fb16SHong Zhang   Vec            bb1;
2543ffe4fb16SHong Zhang 
2544ffe4fb16SHong Zhang   PetscFunctionBegin;
2545ffe4fb16SHong Zhang   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
2546ffe4fb16SHong Zhang   if (bs > 1)
2547ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2548ffe4fb16SHong Zhang 
2549ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2550ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2551ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2552ffe4fb16SHong Zhang       its--;
2553ffe4fb16SHong Zhang     }
2554ffe4fb16SHong Zhang 
2555ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2556ffe4fb16SHong Zhang     while (its--){
2557ffe4fb16SHong Zhang 
2558ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2559ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2560ffe4fb16SHong Zhang 
2561ffe4fb16SHong Zhang       /* copy xx into slvec0a */
2562ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2563ffe4fb16SHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2564ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2565ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2566ffe4fb16SHong Zhang 
2567ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2568ffe4fb16SHong Zhang 
2569ffe4fb16SHong Zhang       /* copy bb into slvec1a */
2570ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2571ffe4fb16SHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2572ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2573ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2574ffe4fb16SHong Zhang 
2575ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2576ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2577ffe4fb16SHong Zhang 
2578ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2579ffe4fb16SHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2580ffe4fb16SHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2581ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2582ffe4fb16SHong Zhang 
2583ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2584ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2585ffe4fb16SHong Zhang 
2586ffe4fb16SHong Zhang       /* local diagonal sweep */
2587ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2588ffe4fb16SHong Zhang     }
2589ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2590ffe4fb16SHong Zhang   } else {
2591ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2592ffe4fb16SHong Zhang   }
2593ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2594ffe4fb16SHong Zhang }
2595ffe4fb16SHong Zhang 
2596ffe4fb16SHong Zhang #undef __FUNCT__
2597ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
2598ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
2599ffe4fb16SHong Zhang {
2600ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
26012798e883SHong Zhang   int            ierr;
2602d05c616dSSatish Balay   PetscScalar    mone=-1.0;
26032798e883SHong Zhang   Vec            lvec1,bb1;
26042798e883SHong Zhang 
26052798e883SHong Zhang   PetscFunctionBegin;
260691723122SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
26072798e883SHong Zhang   if (mat->bs > 1)
26082798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26092798e883SHong Zhang 
2610c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26112798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2612bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26132798e883SHong Zhang       its--;
26142798e883SHong Zhang     }
26152798e883SHong Zhang 
26162798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26172798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26182798e883SHong Zhang     while (its--){
26192798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
26202798e883SHong Zhang 
26212798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26222798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
26232798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
26242798e883SHong Zhang 
26252798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
26262798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
26272798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
26282798e883SHong Zhang 
26292798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
26302798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
26312798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26322798e883SHong Zhang 
26332798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
26342798e883SHong Zhang 
2635c14dc6b6SHong Zhang       /* diagonal sweep */
2636bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26372798e883SHong Zhang     }
26382798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26392798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2640c14dc6b6SHong Zhang   } else {
2641c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2642c14dc6b6SHong Zhang   }
26432798e883SHong Zhang   PetscFunctionReturn(0);
26442798e883SHong Zhang }
26452798e883SHong Zhang 
2646