xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 0b8dc8d2aad2e8b6c929528b6bafed2bccee6aac)
1a30f8f8cSSatish Balay 
2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
3a30f8f8cSSatish Balay #include "mpisbaij.h"
4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
5a30f8f8cSSatish Balay 
6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
10177431f27SBarry Smith       else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102a30f8f8cSSatish Balay       if (nrow >= rmax) { \
103a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1041302d50aSBarry Smith         PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
105a30f8f8cSSatish Balay         MatScalar *new_a; \
106a30f8f8cSSatish Balay  \
10777431f27SBarry Smith         if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
108a30f8f8cSSatish Balay  \
109a30f8f8cSSatish Balay         /* malloc new storage space */ \
1101302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \
11182502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1121302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
113a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
114a30f8f8cSSatish Balay  \
115a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
116a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
117a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
1181302d50aSBarry Smith         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
119a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
1201302d50aSBarry Smith         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
121a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
12287828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
124a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
125a30f8f8cSSatish Balay         /* free up old matrix storage */ \
126a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
127a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
128a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
129a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
130a30f8f8cSSatish Balay         } \
131a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
132a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
133a30f8f8cSSatish Balay  \
134a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
135a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
13652e6d16bSBarry Smith         ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \
1376c6c5352SBarry Smith         a->maxnz += bs2*CHUNKSIZE; \
138a30f8f8cSSatish Balay         a->reallocs++; \
1396c6c5352SBarry Smith         a->nz++; \
140a30f8f8cSSatish Balay       } \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       a_noinsert:; \
151a30f8f8cSSatish Balay     ailen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
154a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
155a30f8f8cSSatish Balay { \
156a30f8f8cSSatish Balay     brow = row/bs;  \
157a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
158a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
159a30f8f8cSSatish Balay       bcol = col/bs; \
160a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
161a30f8f8cSSatish Balay       low = 0; high = nrow; \
162a30f8f8cSSatish Balay       while (high-low > 3) { \
163a30f8f8cSSatish Balay         t = (low+high)/2; \
164a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
165a30f8f8cSSatish Balay         else              low  = t; \
166a30f8f8cSSatish Balay       } \
167a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
168a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
169a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
170a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
171a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
172a30f8f8cSSatish Balay           else                    *bap  = value;  \
173a30f8f8cSSatish Balay           goto b_noinsert; \
174a30f8f8cSSatish Balay         } \
175a30f8f8cSSatish Balay       } \
176a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
17777431f27SBarry Smith       else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
178a30f8f8cSSatish Balay       if (nrow >= rmax) { \
179a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1801302d50aSBarry Smith         PetscInt  new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
181a30f8f8cSSatish Balay         MatScalar *new_a; \
182a30f8f8cSSatish Balay  \
18377431f27SBarry Smith         if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
184a30f8f8cSSatish Balay  \
185a30f8f8cSSatish Balay         /* malloc new storage space */ \
1861302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \
18782502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1881302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
189a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
190a30f8f8cSSatish Balay  \
191a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
192a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
193a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
1941302d50aSBarry Smith         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
195a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
1961302d50aSBarry Smith         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
197a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
198a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
199a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
200a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
201a30f8f8cSSatish Balay         /* free up old matrix storage */ \
202a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
203a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
204a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
205a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
206a30f8f8cSSatish Balay         } \
207a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
208a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
209a30f8f8cSSatish Balay  \
210a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
211a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
21252e6d16bSBarry Smith         ierr = PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \
213a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
214a30f8f8cSSatish Balay         b->reallocs++; \
215a30f8f8cSSatish Balay         b->nz++; \
216a30f8f8cSSatish Balay       } \
217a30f8f8cSSatish Balay       N = nrow++ - 1;  \
218a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
219a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
220a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
221a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
222a30f8f8cSSatish Balay       } \
223a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
224a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
225a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
226a30f8f8cSSatish Balay       b_noinsert:; \
227a30f8f8cSSatish Balay     bilen[brow] = nrow; \
228a30f8f8cSSatish Balay }
229a30f8f8cSSatish Balay #endif
230a30f8f8cSSatish Balay 
231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2324a2ae208SSatish Balay #undef __FUNCT__
2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
235a30f8f8cSSatish Balay {
236a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
237dfbe8321SBarry Smith   PetscErrorCode ierr;
2381302d50aSBarry Smith   PetscInt       i,N = m*n;
239a30f8f8cSSatish Balay   MatScalar      *vsingle;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   PetscFunctionBegin;
242a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
243a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
24482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
245a30f8f8cSSatish Balay     b->setvalueslen  = N;
246a30f8f8cSSatish Balay   }
247a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
248a30f8f8cSSatish Balay 
249a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
250a30f8f8cSSatish Balay     vsingle[i] = v[i];
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
254a30f8f8cSSatish Balay }
255a30f8f8cSSatish Balay 
2564a2ae208SSatish Balay #undef __FUNCT__
2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
259a30f8f8cSSatish Balay {
260a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
261dfbe8321SBarry Smith   PetscErrorCode ierr;
2621302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
263a30f8f8cSSatish Balay   MatScalar      *vsingle;
264a30f8f8cSSatish Balay 
265a30f8f8cSSatish Balay   PetscFunctionBegin;
266a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
267a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
26882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
269a30f8f8cSSatish Balay     b->setvalueslen  = N;
270a30f8f8cSSatish Balay   }
271a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
272a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
273a30f8f8cSSatish Balay     vsingle[i] = v[i];
274a30f8f8cSSatish Balay   }
275a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
276a30f8f8cSSatish Balay   PetscFunctionReturn(0);
277a30f8f8cSSatish Balay }
278a30f8f8cSSatish Balay #endif
279a30f8f8cSSatish Balay 
280a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
281a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
282a30f8f8cSSatish Balay */
2834a2ae208SSatish Balay #undef __FUNCT__
284e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
2851302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
286a30f8f8cSSatish Balay {
287a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
288a30f8f8cSSatish Balay   MatScalar      value;
289b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
290dfbe8321SBarry Smith   PetscErrorCode ierr;
2911302d50aSBarry Smith   PetscInt       i,j,row,col;
2921302d50aSBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
2931302d50aSBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
294521d7252SBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=mat->bs;
295a30f8f8cSSatish Balay 
296a30f8f8cSSatish Balay   /* Some Variables required in the macro */
297a30f8f8cSSatish Balay   Mat            A = baij->A;
298a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2991302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
300a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
301a30f8f8cSSatish Balay 
302a30f8f8cSSatish Balay   Mat            B = baij->B;
303a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
3041302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
305a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
306a30f8f8cSSatish Balay 
3071302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
3081302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
309a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   /* for stash */
3121302d50aSBarry Smith   PetscInt      n_loc, *in_loc=0;
313f65c83cfSHong Zhang   MatScalar     *v_loc=0;
314a30f8f8cSSatish Balay 
315a30f8f8cSSatish Balay   PetscFunctionBegin;
316a30f8f8cSSatish Balay 
317a30f8f8cSSatish Balay   if(!baij->donotstash){
3181302d50aSBarry Smith     ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr);
31982502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
320a30f8f8cSSatish Balay   }
321a30f8f8cSSatish Balay 
322a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
323a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3242515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
32577431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
326a30f8f8cSSatish Balay #endif
327a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
328a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
329a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
330f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
331a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
332a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
333a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
334a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
335a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
336a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
337a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
338a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
34077431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
341a30f8f8cSSatish Balay #endif
342a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
343a30f8f8cSSatish Balay           if (mat->was_assembled) {
344a30f8f8cSSatish Balay             if (!baij->colmap) {
345653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
346a30f8f8cSSatish Balay             }
347a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
348a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
34971730473SSatish Balay             col  = col - 1;
350a30f8f8cSSatish Balay #else
35171730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
352a30f8f8cSSatish Balay #endif
353a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
354a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
355a30f8f8cSSatish Balay               col =  in[j];
356a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
357a30f8f8cSSatish Balay               B = baij->B;
358a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
359a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
360a30f8f8cSSatish Balay               ba=b->a;
36171730473SSatish Balay             } else col += in[j]%bs;
362a30f8f8cSSatish Balay           } else col = in[j];
363a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
364a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
365a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
366a30f8f8cSSatish Balay         }
367a30f8f8cSSatish Balay       }
368a30f8f8cSSatish Balay     } else {  /* off processor entry */
369a30f8f8cSSatish Balay       if (!baij->donotstash) {
370a30f8f8cSSatish Balay         n_loc = 0;
371a30f8f8cSSatish Balay         for (j=0; j<n; j++){
372f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
373a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
374a30f8f8cSSatish Balay           if (roworiented) {
375a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
376a30f8f8cSSatish Balay           } else {
377a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
378a30f8f8cSSatish Balay           }
379a30f8f8cSSatish Balay           n_loc++;
380a30f8f8cSSatish Balay         }
381a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
382a30f8f8cSSatish Balay       }
383a30f8f8cSSatish Balay     }
384a30f8f8cSSatish Balay   }
385a30f8f8cSSatish Balay 
386a30f8f8cSSatish Balay   if(!baij->donotstash){
387a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
388a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
389a30f8f8cSSatish Balay   }
390a30f8f8cSSatish Balay   PetscFunctionReturn(0);
391a30f8f8cSSatish Balay }
392a30f8f8cSSatish Balay 
3934a2ae208SSatish Balay #undef __FUNCT__
394e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
396a30f8f8cSSatish Balay {
3970880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
398f15d580aSBarry Smith   const MatScalar *value;
399f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
4000880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
401dfbe8321SBarry Smith   PetscErrorCode  ierr;
4021302d50aSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
4031302d50aSBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
404521d7252SBarry Smith   PetscInt        cend=baij->cend,bs=mat->bs,bs2=baij->bs2;
4050880e062SHong Zhang 
406a30f8f8cSSatish Balay   PetscFunctionBegin;
4070880e062SHong Zhang   if(!barray) {
4080880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4090880e062SHong Zhang     baij->barray = barray;
4100880e062SHong Zhang   }
4110880e062SHong Zhang 
4120880e062SHong Zhang   if (roworiented) {
4130880e062SHong Zhang     stepval = (n-1)*bs;
4140880e062SHong Zhang   } else {
4150880e062SHong Zhang     stepval = (m-1)*bs;
4160880e062SHong Zhang   }
4170880e062SHong Zhang   for (i=0; i<m; i++) {
4180880e062SHong Zhang     if (im[i] < 0) continue;
4192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
42077431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
4210880e062SHong Zhang #endif
4220880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4230880e062SHong Zhang       row = im[i] - rstart;
4240880e062SHong Zhang       for (j=0; j<n; j++) {
4250880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4260880e062SHong Zhang         if ((roworiented) && (n == 1)) {
427f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4280880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
429f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4300880e062SHong Zhang         } else { /* Here a copy is required */
4310880e062SHong Zhang           if (roworiented) {
4320880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4330880e062SHong Zhang           } else {
4340880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4350880e062SHong Zhang           }
4360880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4370880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4380880e062SHong Zhang               *barray++  = *value++;
4390880e062SHong Zhang             }
4400880e062SHong Zhang           }
4410880e062SHong Zhang           barray -=bs2;
4420880e062SHong Zhang         }
4430880e062SHong Zhang 
4440880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4450880e062SHong Zhang           col  = in[j] - cstart;
4460880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4470880e062SHong Zhang         }
4480880e062SHong Zhang         else if (in[j] < 0) continue;
4492515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
45077431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
4510880e062SHong Zhang #endif
4520880e062SHong Zhang         else {
4530880e062SHong Zhang           if (mat->was_assembled) {
4540880e062SHong Zhang             if (!baij->colmap) {
455653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
4560880e062SHong Zhang             }
4570880e062SHong Zhang 
4582515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
4590880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4601302d50aSBarry Smith             { PetscInt data;
4610880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4620880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4630880e062SHong Zhang             }
4640880e062SHong Zhang #else
4650880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4660880e062SHong Zhang #endif
4670880e062SHong Zhang #endif
4680880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4690880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4700880e062SHong Zhang             col  = (col - 1)/bs;
4710880e062SHong Zhang #else
4720880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4730880e062SHong Zhang #endif
4740880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4750880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4760880e062SHong Zhang               col =  in[j];
4770880e062SHong Zhang             }
4780880e062SHong Zhang           }
4790880e062SHong Zhang           else col = in[j];
480e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4810880e062SHong Zhang         }
4820880e062SHong Zhang       }
4830880e062SHong Zhang     } else {
4840880e062SHong Zhang       if (!baij->donotstash) {
4850880e062SHong Zhang         if (roworiented) {
4860880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4870880e062SHong Zhang         } else {
4880880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4890880e062SHong Zhang         }
4900880e062SHong Zhang       }
4910880e062SHong Zhang     }
4920880e062SHong Zhang   }
4930880e062SHong Zhang   PetscFunctionReturn(0);
494a30f8f8cSSatish Balay }
495a30f8f8cSSatish Balay 
4964a2ae208SSatish Balay #undef __FUNCT__
4974a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4981302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
499a30f8f8cSSatish Balay {
500f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5016849ba73SBarry Smith   PetscErrorCode ierr;
502521d7252SBarry Smith   PetscInt       bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
5031302d50aSBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
504a30f8f8cSSatish Balay 
505a30f8f8cSSatish Balay   PetscFunctionBegin;
506a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
50777431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
50877431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
509a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
510a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
511a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
51277431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
51377431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
514a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
515a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
516c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
517a30f8f8cSSatish Balay         } else {
518a30f8f8cSSatish Balay           if (!baij->colmap) {
519653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
520a30f8f8cSSatish Balay           }
521a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
522a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
523a30f8f8cSSatish Balay           data --;
524a30f8f8cSSatish Balay #else
525a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
526a30f8f8cSSatish Balay #endif
527a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
528a30f8f8cSSatish Balay           else {
529a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
530e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
531a30f8f8cSSatish Balay           }
532a30f8f8cSSatish Balay         }
533a30f8f8cSSatish Balay       }
534a30f8f8cSSatish Balay     } else {
53529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
536a30f8f8cSSatish Balay     }
537a30f8f8cSSatish Balay   }
538a30f8f8cSSatish Balay  PetscFunctionReturn(0);
539a30f8f8cSSatish Balay }
540a30f8f8cSSatish Balay 
5414a2ae208SSatish Balay #undef __FUNCT__
5424a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
543dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
544a30f8f8cSSatish Balay {
545a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
546dfbe8321SBarry Smith   PetscErrorCode ierr;
547a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
548a30f8f8cSSatish Balay 
549a30f8f8cSSatish Balay   PetscFunctionBegin;
550a30f8f8cSSatish Balay   if (baij->size == 1) {
551a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
552a30f8f8cSSatish Balay   } else {
553a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
554f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
555a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
556a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
557a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
558a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
559d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
560a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
561a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
562*0b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
563*0b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
564*0b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
565*0b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
566*0b8dc8d2SHong Zhang       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstart,nz;
567*0b8dc8d2SHong Zhang       PetscInt     brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs;
568*0b8dc8d2SHong Zhang       MatScalar    *v;
569*0b8dc8d2SHong Zhang 
570*0b8dc8d2SHong Zhang       ierr  = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
571*0b8dc8d2SHong Zhang       rsum2 = rsum + mat->N;
572*0b8dc8d2SHong Zhang       ierr  = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr);
573*0b8dc8d2SHong Zhang       /* Amat */
574*0b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
575*0b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
576*0b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
577*0b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
578*0b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
579*0b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
580*0b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
581*0b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
582*0b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
583*0b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
584*0b8dc8d2SHong Zhang               /* non-diagonal block */
585*0b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
586*0b8dc8d2SHong Zhang             }
587*0b8dc8d2SHong Zhang           }
588*0b8dc8d2SHong Zhang         }
589*0b8dc8d2SHong Zhang       }
590*0b8dc8d2SHong Zhang       /* Bmat */
591*0b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
592*0b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
593*0b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
594*0b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
595*0b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
596*0b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
597*0b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
598*0b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
599*0b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
600*0b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
601*0b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
602*0b8dc8d2SHong Zhang             }
603*0b8dc8d2SHong Zhang           }
604*0b8dc8d2SHong Zhang         }
605*0b8dc8d2SHong Zhang       }
606*0b8dc8d2SHong Zhang       ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
607*0b8dc8d2SHong Zhang       *norm = 0.0;
608*0b8dc8d2SHong Zhang       for (col=0; col<mat->N; col++) {
609*0b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
610*0b8dc8d2SHong Zhang       }
611*0b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
612a30f8f8cSSatish Balay     } else {
61329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
614a30f8f8cSSatish Balay     }
615a30f8f8cSSatish Balay   }
616a30f8f8cSSatish Balay   PetscFunctionReturn(0);
617a30f8f8cSSatish Balay }
618a30f8f8cSSatish Balay 
6194a2ae208SSatish Balay #undef __FUNCT__
6204a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
621dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
622a30f8f8cSSatish Balay {
623a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
624dfbe8321SBarry Smith   PetscErrorCode ierr;
6251302d50aSBarry Smith   PetscInt       nstash,reallocs;
626a30f8f8cSSatish Balay   InsertMode     addv;
627a30f8f8cSSatish Balay 
628a30f8f8cSSatish Balay   PetscFunctionBegin;
629a30f8f8cSSatish Balay   if (baij->donotstash) {
630a30f8f8cSSatish Balay     PetscFunctionReturn(0);
631a30f8f8cSSatish Balay   }
632a30f8f8cSSatish Balay 
633a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
634a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
635a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
63629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
637a30f8f8cSSatish Balay   }
638a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
639a30f8f8cSSatish Balay 
640a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
641a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
642a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
64363ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
644a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
64563ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
646a30f8f8cSSatish Balay   PetscFunctionReturn(0);
647a30f8f8cSSatish Balay }
648a30f8f8cSSatish Balay 
6494a2ae208SSatish Balay #undef __FUNCT__
6504a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
651dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
652a30f8f8cSSatish Balay {
653a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
654a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
655a30f8f8cSSatish Balay   Mat_SeqBAIJ    *b=(Mat_SeqBAIJ*)baij->B->data;
6566849ba73SBarry Smith   PetscErrorCode ierr;
65713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
6581302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
65913f74950SBarry Smith   PetscMPIInt    n;
660a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
661a30f8f8cSSatish Balay   MatScalar      *val;
662a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
663a30f8f8cSSatish Balay 
664a30f8f8cSSatish Balay   PetscFunctionBegin;
665a30f8f8cSSatish Balay 
666a30f8f8cSSatish Balay   if (!baij->donotstash) {
667a30f8f8cSSatish Balay     while (1) {
668a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
669a30f8f8cSSatish Balay       if (!flg) break;
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay       for (i=0; i<n;) {
672a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
673a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
674a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
675a30f8f8cSSatish Balay         else       ncols = n-i;
676a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
677a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
678a30f8f8cSSatish Balay         i = j;
679a30f8f8cSSatish Balay       }
680a30f8f8cSSatish Balay     }
681a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
682a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
683a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
684a30f8f8cSSatish Balay        restore the original flags */
685a30f8f8cSSatish Balay     r1 = baij->roworiented;
686a30f8f8cSSatish Balay     r2 = a->roworiented;
687a30f8f8cSSatish Balay     r3 = b->roworiented;
688a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
689a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
690a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
691a30f8f8cSSatish Balay     while (1) {
692a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
693a30f8f8cSSatish Balay       if (!flg) break;
694a30f8f8cSSatish Balay 
695a30f8f8cSSatish Balay       for (i=0; i<n;) {
696a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
697a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
698a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
699a30f8f8cSSatish Balay         else       ncols = n-i;
700a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
701a30f8f8cSSatish Balay         i = j;
702a30f8f8cSSatish Balay       }
703a30f8f8cSSatish Balay     }
704a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     baij->roworiented = r1;
706a30f8f8cSSatish Balay     a->roworiented    = r2;
707a30f8f8cSSatish Balay     b->roworiented    = r3;
708a30f8f8cSSatish Balay   }
709a30f8f8cSSatish Balay 
710a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
711a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
712a30f8f8cSSatish Balay 
713a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
714a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
715a30f8f8cSSatish Balay   /*
716a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
717a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
718a30f8f8cSSatish Balay   */
719a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
720a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
721a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
722c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
723a30f8f8cSSatish Balay     }
724a30f8f8cSSatish Balay   }
725a30f8f8cSSatish Balay 
726a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
72740781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
728a30f8f8cSSatish Balay   }
7294eb6d288SHong Zhang   b->compressedrow.use = PETSC_TRUE;
730a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
731a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
732a30f8f8cSSatish Balay 
733a30f8f8cSSatish Balay   if (baij->rowvalues) {
734a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
735a30f8f8cSSatish Balay     baij->rowvalues = 0;
736a30f8f8cSSatish Balay   }
7375222a1afSHong Zhang 
738a30f8f8cSSatish Balay   PetscFunctionReturn(0);
739a30f8f8cSSatish Balay }
740a30f8f8cSSatish Balay 
7414a2ae208SSatish Balay #undef __FUNCT__
7424a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7436849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
744a30f8f8cSSatish Balay {
745a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
746dfbe8321SBarry Smith   PetscErrorCode    ierr;
747521d7252SBarry Smith   PetscInt          bs = mat->bs;
7481302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
74932077d6dSBarry Smith   PetscTruth        iascii,isdraw;
750b0a32e0cSBarry Smith   PetscViewer       sviewer;
751f3ef73ceSBarry Smith   PetscViewerFormat format;
752a30f8f8cSSatish Balay 
753a30f8f8cSSatish Balay   PetscFunctionBegin;
75432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
755fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
75632077d6dSBarry Smith   if (iascii) {
757b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
758456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
759a30f8f8cSSatish Balay       MatInfo info;
760a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
761a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
76277431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
76377431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
764521d7252SBarry Smith               mat->bs,(PetscInt)info.memory);CHKERRQ(ierr);
765a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
76677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
767a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
76877431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
769b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
770a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
771a30f8f8cSSatish Balay       PetscFunctionReturn(0);
772fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
77377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
774a30f8f8cSSatish Balay       PetscFunctionReturn(0);
775a30f8f8cSSatish Balay     }
776a30f8f8cSSatish Balay   }
777a30f8f8cSSatish Balay 
778a30f8f8cSSatish Balay   if (isdraw) {
779b0a32e0cSBarry Smith     PetscDraw       draw;
780a30f8f8cSSatish Balay     PetscTruth isnull;
781b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
782b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
783a30f8f8cSSatish Balay   }
784a30f8f8cSSatish Balay 
785a30f8f8cSSatish Balay   if (size == 1) {
786e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
787a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
788a30f8f8cSSatish Balay   } else {
789a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
790a30f8f8cSSatish Balay     Mat         A;
79165d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
79265d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
7931302d50aSBarry Smith     PetscInt         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
794a30f8f8cSSatish Balay     MatScalar   *a;
795a30f8f8cSSatish Balay 
796f204ca49SKris Buschelman     /* Should this be the same type as mat? */
797a30f8f8cSSatish Balay     if (!rank) {
798f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr);
799a30f8f8cSSatish Balay     } else {
800f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr);
801a30f8f8cSSatish Balay     }
802f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
803521d7252SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
80452e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
805a30f8f8cSSatish Balay 
806a30f8f8cSSatish Balay     /* copy over the A part */
80765d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
808a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
8091302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
810a30f8f8cSSatish Balay 
811a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
812a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
813a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
814a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
815a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
816a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
817a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
818a30f8f8cSSatish Balay           col++; a += bs;
819a30f8f8cSSatish Balay         }
820a30f8f8cSSatish Balay       }
821a30f8f8cSSatish Balay     }
822a30f8f8cSSatish Balay     /* copy over the B part */
82365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
82465d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
825a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
826a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
827a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
828a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
829a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
830a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
831a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
832a30f8f8cSSatish Balay           col++; a += bs;
833a30f8f8cSSatish Balay         }
834a30f8f8cSSatish Balay       }
835a30f8f8cSSatish Balay     }
836a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
837a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
838a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
839a30f8f8cSSatish Balay     /*
840a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
841b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
842a30f8f8cSSatish Balay     */
843b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
84465d70643SHong Zhang     if (!rank) {
845e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
846a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
847a30f8f8cSSatish Balay     }
848b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
849a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
850a30f8f8cSSatish Balay   }
851a30f8f8cSSatish Balay   PetscFunctionReturn(0);
852a30f8f8cSSatish Balay }
853a30f8f8cSSatish Balay 
8544a2ae208SSatish Balay #undef __FUNCT__
8554a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
856dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
857a30f8f8cSSatish Balay {
858dfbe8321SBarry Smith   PetscErrorCode ierr;
85932077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
860a30f8f8cSSatish Balay 
861a30f8f8cSSatish Balay   PetscFunctionBegin;
86232077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
863fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
864b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
865fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
86632077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
867a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
868a30f8f8cSSatish Balay   } else {
8691302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
870a30f8f8cSSatish Balay   }
871a30f8f8cSSatish Balay   PetscFunctionReturn(0);
872a30f8f8cSSatish Balay }
873a30f8f8cSSatish Balay 
8744a2ae208SSatish Balay #undef __FUNCT__
8754a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
876dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
877a30f8f8cSSatish Balay {
878a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
879dfbe8321SBarry Smith   PetscErrorCode ierr;
880a30f8f8cSSatish Balay 
881a30f8f8cSSatish Balay   PetscFunctionBegin;
882a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
88377431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
884a30f8f8cSSatish Balay #endif
885a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
886a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
887a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
888a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
889a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
890a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
891a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
892a30f8f8cSSatish Balay #else
893a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
894a30f8f8cSSatish Balay #endif
895a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
896a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
897a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
89840781036SHong Zhang   if (baij->slvec0) {
89940781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
90040781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
90140781036SHong Zhang   }
90240781036SHong Zhang   if (baij->slvec1) {
90340781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
90440781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
90540781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
90640781036SHong Zhang   }
90740781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
908a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
909a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
910a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
911a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
912a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
913a30f8f8cSSatish Balay #endif
914a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
915901853e0SKris Buschelman 
916901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
917901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
918901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
919901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
920a30f8f8cSSatish Balay   PetscFunctionReturn(0);
921a30f8f8cSSatish Balay }
922a30f8f8cSSatish Balay 
9234a2ae208SSatish Balay #undef __FUNCT__
924a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
925dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
926a9d4b620SHong Zhang {
927a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
928dfbe8321SBarry Smith   PetscErrorCode ierr;
929521d7252SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->bs;
930a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
931a9d4b620SHong Zhang 
932a9d4b620SHong Zhang   PetscFunctionBegin;
933a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
934a9d4b620SHong Zhang   if (nt != A->n) {
935a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
936a9d4b620SHong Zhang   }
937a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
938a9d4b620SHong Zhang   if (nt != A->m) {
939a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
940a9d4b620SHong Zhang   }
941a9d4b620SHong Zhang 
942a9d4b620SHong Zhang   /* diagonal part */
943a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
944a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
945a9d4b620SHong Zhang 
946a9d4b620SHong Zhang   /* subdiagonal part */
947a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
948a9d4b620SHong Zhang 
949a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9501ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9511ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
952a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9531ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
954a9d4b620SHong Zhang 
955a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9561ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
957a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
958a9d4b620SHong Zhang 
959a9d4b620SHong Zhang   /* supperdiagonal part */
960a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
961a9d4b620SHong Zhang 
962a9d4b620SHong Zhang   PetscFunctionReturn(0);
963a9d4b620SHong Zhang }
964a9d4b620SHong Zhang 
965a9d4b620SHong Zhang #undef __FUNCT__
96640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
967dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
968a30f8f8cSSatish Balay {
969a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
970dfbe8321SBarry Smith   PetscErrorCode ierr;
9711302d50aSBarry Smith   PetscInt       nt;
972a30f8f8cSSatish Balay 
973a30f8f8cSSatish Balay   PetscFunctionBegin;
974a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
975b5df2d14SHong Zhang   if (nt != A->n) {
97629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
977a30f8f8cSSatish Balay   }
978a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
979b5df2d14SHong Zhang   if (nt != A->m) {
98029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
981a30f8f8cSSatish Balay   }
98265d70643SHong Zhang 
983b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
984b941877fSHong Zhang   /* do diagonal part */
985b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
986b941877fSHong Zhang   /* do supperdiagonal part */
987b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
988b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
989b941877fSHong Zhang   /* do subdiagonal part */
990b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
991b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
992b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
99365d70643SHong Zhang 
994a30f8f8cSSatish Balay   PetscFunctionReturn(0);
995a30f8f8cSSatish Balay }
996a30f8f8cSSatish Balay 
9974a2ae208SSatish Balay #undef __FUNCT__
9984a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
999dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1000a30f8f8cSSatish Balay {
1001de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1002dfbe8321SBarry Smith   PetscErrorCode ierr;
1003521d7252SBarry Smith   PetscInt       mbs=a->mbs,bs=A->bs;
1004a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
1005a9d4b620SHong Zhang 
1006a9d4b620SHong Zhang   PetscFunctionBegin;
1007a9d4b620SHong Zhang   /*
100856faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
100956faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
1010a9d4b620SHong Zhang   */
1011a9d4b620SHong Zhang   /* diagonal part */
1012a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1013a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1014a9d4b620SHong Zhang 
1015a9d4b620SHong Zhang   /* subdiagonal part */
1016a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1017a9d4b620SHong Zhang 
1018a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10191ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10201ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1021a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
10221ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1023a9d4b620SHong Zhang 
1024a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
10251ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1026a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1027a9d4b620SHong Zhang 
1028a9d4b620SHong Zhang   /* supperdiagonal part */
1029a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1030a9d4b620SHong Zhang 
1031a9d4b620SHong Zhang   PetscFunctionReturn(0);
1032a9d4b620SHong Zhang }
1033a9d4b620SHong Zhang 
1034a9d4b620SHong Zhang #undef __FUNCT__
1035a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1036dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1037a9d4b620SHong Zhang {
1038a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1039dfbe8321SBarry Smith   PetscErrorCode ierr;
1040a30f8f8cSSatish Balay 
1041a30f8f8cSSatish Balay   PetscFunctionBegin;
1042b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1043b941877fSHong Zhang   /* do diagonal part */
1044b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1045b941877fSHong Zhang   /* do supperdiagonal part */
1046b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1047de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1048de8b6608SHong Zhang 
1049b941877fSHong Zhang   /* do subdiagonal part */
1050a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1051a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1052a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1053aa482183SHong Zhang 
1054a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1055a30f8f8cSSatish Balay }
1056a30f8f8cSSatish Balay 
10574a2ae208SSatish Balay #undef __FUNCT__
10584a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1059dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1060a30f8f8cSSatish Balay {
1061dfbe8321SBarry Smith   PetscErrorCode ierr;
10625a7c0312SHong Zhang 
1063a30f8f8cSSatish Balay   PetscFunctionBegin;
10645a7c0312SHong Zhang   ierr = MatMult(A,xx,yy);CHKERRQ(ierr);
10655a7c0312SHong Zhang   PetscFunctionReturn(0);
1066a30f8f8cSSatish Balay }
1067a30f8f8cSSatish Balay 
10684a2ae208SSatish Balay #undef __FUNCT__
10694a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1070dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1071a30f8f8cSSatish Balay {
1072dfbe8321SBarry Smith   PetscErrorCode ierr;
10735a7c0312SHong Zhang 
1074a30f8f8cSSatish Balay   PetscFunctionBegin;
10755a7c0312SHong Zhang   ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr);
10765a7c0312SHong Zhang   PetscFunctionReturn(0);
1077a30f8f8cSSatish Balay }
1078a30f8f8cSSatish Balay 
1079a30f8f8cSSatish Balay /*
1080a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1081a30f8f8cSSatish Balay    diagonal block
1082a30f8f8cSSatish Balay */
10834a2ae208SSatish Balay #undef __FUNCT__
10844a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1085dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1086a30f8f8cSSatish Balay {
1087a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1088dfbe8321SBarry Smith   PetscErrorCode ierr;
1089a30f8f8cSSatish Balay 
1090a30f8f8cSSatish Balay   PetscFunctionBegin;
109129bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1092a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1093a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1094a30f8f8cSSatish Balay }
1095a30f8f8cSSatish Balay 
10964a2ae208SSatish Balay #undef __FUNCT__
10974a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1098dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A)
1099a30f8f8cSSatish Balay {
1100a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1101dfbe8321SBarry Smith   PetscErrorCode ierr;
1102a30f8f8cSSatish Balay 
1103a30f8f8cSSatish Balay   PetscFunctionBegin;
1104a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1105a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1106a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1107a30f8f8cSSatish Balay }
1108a30f8f8cSSatish Balay 
11094a2ae208SSatish Balay #undef __FUNCT__
11104a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11111302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1112a30f8f8cSSatish Balay {
1113a30f8f8cSSatish Balay   PetscFunctionBegin;
111480e57f9fSHong Zhang   SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format");
1115a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1116a30f8f8cSSatish Balay }
1117a30f8f8cSSatish Balay 
11184a2ae208SSatish Balay #undef __FUNCT__
11194a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
11201302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1121a30f8f8cSSatish Balay {
1122a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1123a30f8f8cSSatish Balay 
1124a30f8f8cSSatish Balay   PetscFunctionBegin;
1125abc0a331SBarry Smith   if (!baij->getrowactive) {
1126abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1127a30f8f8cSSatish Balay   }
1128a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1129a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1130a30f8f8cSSatish Balay }
1131a30f8f8cSSatish Balay 
11324a2ae208SSatish Balay #undef __FUNCT__
11334a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1134dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1135a30f8f8cSSatish Balay {
1136a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1137dfbe8321SBarry Smith   PetscErrorCode ierr;
1138a30f8f8cSSatish Balay 
1139a30f8f8cSSatish Balay   PetscFunctionBegin;
1140a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1141a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1142a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1143a30f8f8cSSatish Balay }
1144a30f8f8cSSatish Balay 
11454a2ae208SSatish Balay #undef __FUNCT__
11464a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1147dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1148a30f8f8cSSatish Balay {
1149a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1150a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1151dfbe8321SBarry Smith   PetscErrorCode ierr;
1152a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1153a30f8f8cSSatish Balay 
1154a30f8f8cSSatish Balay   PetscFunctionBegin;
1155521d7252SBarry Smith   info->block_size     = (PetscReal)matin->bs;
1156a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1157a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1158a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1159a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1160a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1161a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1162a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1163a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1164a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1165a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1166a30f8f8cSSatish Balay     info->memory       = isend[3];
1167a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1168a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1169d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1170a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1171a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1172a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1173a30f8f8cSSatish Balay     info->memory       = irecv[3];
1174a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1175a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1176d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1177a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1178a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1179a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1180a30f8f8cSSatish Balay     info->memory       = irecv[3];
1181a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1182a30f8f8cSSatish Balay   } else {
118377431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1184a30f8f8cSSatish Balay   }
1185f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1186f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1187f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1188f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1189a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1190a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1191a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1192a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1193a30f8f8cSSatish Balay }
1194a30f8f8cSSatish Balay 
11954a2ae208SSatish Balay #undef __FUNCT__
11964a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1197dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1198a30f8f8cSSatish Balay {
1199a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1200dfbe8321SBarry Smith   PetscErrorCode ierr;
1201a30f8f8cSSatish Balay 
1202a30f8f8cSSatish Balay   PetscFunctionBegin;
1203e98b92d7SKris Buschelman   switch (op) {
1204e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1205e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1206e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1207e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1208e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1209e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1210e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1211a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1212a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1213e98b92d7SKris Buschelman     break;
1214e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1215a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1216a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1217a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1218e98b92d7SKris Buschelman     break;
1219e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1220e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1221e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
122263ba0a88SBarry Smith     ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr);
1223e98b92d7SKris Buschelman     break;
1224e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1225a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1226a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1227a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1228e98b92d7SKris Buschelman     break;
1229e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1230a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1231e98b92d7SKris Buschelman     break;
1232e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
123329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1234e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1235a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1236e98b92d7SKris Buschelman     break;
12379a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
12389a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
12399a4540c5SBarry Smith   case MAT_HERMITIAN:
12409a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
124177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
124277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12439a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
12449a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12459a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
124677e54ba9SKris Buschelman     break;
1247e98b92d7SKris Buschelman   default:
124829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1249a30f8f8cSSatish Balay   }
1250a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1251a30f8f8cSSatish Balay }
1252a30f8f8cSSatish Balay 
12534a2ae208SSatish Balay #undef __FUNCT__
12548115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1255dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1256a30f8f8cSSatish Balay {
1257dfbe8321SBarry Smith   PetscErrorCode ierr;
1258a30f8f8cSSatish Balay   PetscFunctionBegin;
1259999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
12608115998fSBarry Smith   PetscFunctionReturn(0);
1261a30f8f8cSSatish Balay }
1262a30f8f8cSSatish Balay 
12634a2ae208SSatish Balay #undef __FUNCT__
12644a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1265dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1266a30f8f8cSSatish Balay {
1267a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1268a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1269dfbe8321SBarry Smith   PetscErrorCode ierr;
12705e90f9d9SHong Zhang   PetscInt       nv,m,n;
1271b3bf805bSHong Zhang   PetscTruth     flg;
1272a30f8f8cSSatish Balay 
1273a30f8f8cSSatish Balay   PetscFunctionBegin;
1274a30f8f8cSSatish Balay   if (ll != rr){
1275b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1276b3bf805bSHong Zhang     if (!flg)
127729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1278a30f8f8cSSatish Balay   }
1279b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1280b3bf805bSHong Zhang 
12815e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12825e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1283b3bf805bSHong Zhang 
12845e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12855e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12865e90f9d9SHong Zhang 
1287a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
12885e90f9d9SHong Zhang 
12895e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1290a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12915e90f9d9SHong Zhang 
12925e90f9d9SHong Zhang   /* scale the diagonal part */
1293a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1294a30f8f8cSSatish Balay 
12955e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1296a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1297a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1298a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1299a30f8f8cSSatish Balay }
1300a30f8f8cSSatish Balay 
13014a2ae208SSatish Balay #undef __FUNCT__
13024a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1303dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1304a30f8f8cSSatish Balay {
1305a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1306a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
13071302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1308dfbe8321SBarry Smith   PetscErrorCode    ierr;
1309a30f8f8cSSatish Balay 
1310a30f8f8cSSatish Balay   PetscFunctionBegin;
1311a30f8f8cSSatish Balay   if (!a->rank) {
1312a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1313a30f8f8cSSatish Balay   }
13141302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1315a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1316a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1317a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1318a30f8f8cSSatish Balay }
1319a30f8f8cSSatish Balay 
13204a2ae208SSatish Balay #undef __FUNCT__
13214a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1322dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1323a30f8f8cSSatish Balay {
1324f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1325dfbe8321SBarry Smith   PetscErrorCode ierr;
1326a30f8f8cSSatish Balay 
1327a30f8f8cSSatish Balay   PetscFunctionBegin;
1328a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1329a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1330a30f8f8cSSatish Balay }
1331a30f8f8cSSatish Balay 
13326849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1333a30f8f8cSSatish Balay 
13344a2ae208SSatish Balay #undef __FUNCT__
13354a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1336dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1337a30f8f8cSSatish Balay {
1338a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1339a30f8f8cSSatish Balay   Mat            a,b,c,d;
1340a30f8f8cSSatish Balay   PetscTruth     flg;
1341dfbe8321SBarry Smith   PetscErrorCode ierr;
1342a30f8f8cSSatish Balay 
1343a30f8f8cSSatish Balay   PetscFunctionBegin;
1344a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1345a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1346a30f8f8cSSatish Balay 
1347a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1348abc0a331SBarry Smith   if (flg) {
1349a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1350a30f8f8cSSatish Balay   }
1351a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1352a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1353a30f8f8cSSatish Balay }
1354a30f8f8cSSatish Balay 
13554a2ae208SSatish Balay #undef __FUNCT__
13564a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1357dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1358273d9f13SBarry Smith {
1359dfbe8321SBarry Smith   PetscErrorCode ierr;
1360273d9f13SBarry Smith 
1361273d9f13SBarry Smith   PetscFunctionBegin;
1362273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1363273d9f13SBarry Smith   PetscFunctionReturn(0);
1364273d9f13SBarry Smith }
1365a5e6ed63SBarry Smith 
1366a5e6ed63SBarry Smith #undef __FUNCT__
1367a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
13681302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1369a5e6ed63SBarry Smith {
13706849ba73SBarry Smith   PetscErrorCode ierr;
13711302d50aSBarry Smith   PetscInt       i;
1372a5e6ed63SBarry Smith   PetscTruth     flg;
1373a5e6ed63SBarry Smith 
13746849ba73SBarry Smith   PetscFunctionBegin;
1375a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1376a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1377a5e6ed63SBarry Smith     if (!flg) {
13781302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1379a5e6ed63SBarry Smith     }
1380a5e6ed63SBarry Smith   }
1381a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1382a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1383a5e6ed63SBarry Smith }
1384a5e6ed63SBarry Smith 
1385a5e6ed63SBarry Smith 
1386a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1387a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1388a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1389a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1390a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1391a9d4b620SHong Zhang        MatMult_MPISBAIJ,
139297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1393a30f8f8cSSatish Balay        MatMultTranspose_MPISBAIJ,
1394a30f8f8cSSatish Balay        MatMultTransposeAdd_MPISBAIJ,
1395a30f8f8cSSatish Balay        0,
1396a30f8f8cSSatish Balay        0,
1397a30f8f8cSSatish Balay        0,
139897304618SKris Buschelman /*10*/ 0,
1399a30f8f8cSSatish Balay        0,
1400a30f8f8cSSatish Balay        0,
14012798e883SHong Zhang        MatRelax_MPISBAIJ,
1402a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
140397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1404a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1405a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1406a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1407a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
140897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1409a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1410a30f8f8cSSatish Balay        0,
1411a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1412a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1413dcf5cc72SBarry Smith /*25*/ 0,
1414a30f8f8cSSatish Balay        0,
1415a30f8f8cSSatish Balay        0,
1416a30f8f8cSSatish Balay        0,
1417a30f8f8cSSatish Balay        0,
141897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1419b5df2d14SHong Zhang        0,
1420a30f8f8cSSatish Balay        0,
1421a30f8f8cSSatish Balay        0,
1422a30f8f8cSSatish Balay        0,
142397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1424a30f8f8cSSatish Balay        0,
1425a30f8f8cSSatish Balay        0,
1426a30f8f8cSSatish Balay        0,
1427a30f8f8cSSatish Balay        0,
142897304618SKris Buschelman /*40*/ 0,
1429a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1430d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1431a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1432a30f8f8cSSatish Balay        0,
143397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1434a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1435a30f8f8cSSatish Balay        0,
1436a30f8f8cSSatish Balay        0,
1437a30f8f8cSSatish Balay        0,
1438521d7252SBarry Smith /*50*/ 0,
1439a30f8f8cSSatish Balay        0,
1440a30f8f8cSSatish Balay        0,
1441a30f8f8cSSatish Balay        0,
1442a30f8f8cSSatish Balay        0,
144397304618SKris Buschelman /*55*/ 0,
1444a30f8f8cSSatish Balay        0,
1445a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1446a30f8f8cSSatish Balay        0,
1447a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
144897304618SKris Buschelman /*60*/ 0,
1449a30f8f8cSSatish Balay        0,
1450a30f8f8cSSatish Balay        0,
14518a124369SBarry Smith        MatGetPetscMaps_Petsc,
145224d5174aSHong Zhang        0,
145397304618SKris Buschelman /*65*/ 0,
145424d5174aSHong Zhang        0,
145524d5174aSHong Zhang        0,
145624d5174aSHong Zhang        0,
145724d5174aSHong Zhang        0,
145897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
145924d5174aSHong Zhang        0,
146097304618SKris Buschelman        0,
146197304618SKris Buschelman        0,
146297304618SKris Buschelman        0,
146397304618SKris Buschelman /*75*/ 0,
146497304618SKris Buschelman        0,
146597304618SKris Buschelman        0,
146697304618SKris Buschelman        0,
146797304618SKris Buschelman        0,
146897304618SKris Buschelman /*80*/ 0,
146997304618SKris Buschelman        0,
147097304618SKris Buschelman        0,
147197304618SKris Buschelman        0,
1472865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1473865e5f61SKris Buschelman /*85*/ 0,
1474865e5f61SKris Buschelman        0,
1475865e5f61SKris Buschelman        0,
1476865e5f61SKris Buschelman        0,
1477865e5f61SKris Buschelman        0,
1478865e5f61SKris Buschelman /*90*/ 0,
1479865e5f61SKris Buschelman        0,
1480865e5f61SKris Buschelman        0,
1481865e5f61SKris Buschelman        0,
1482865e5f61SKris Buschelman        0,
1483865e5f61SKris Buschelman /*95*/ 0,
1484865e5f61SKris Buschelman        0,
1485865e5f61SKris Buschelman        0,
1486865e5f61SKris Buschelman        0};
1487a30f8f8cSSatish Balay 
1488a30f8f8cSSatish Balay 
1489a30f8f8cSSatish Balay EXTERN_C_BEGIN
14904a2ae208SSatish Balay #undef __FUNCT__
14914a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1492dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1493a30f8f8cSSatish Balay {
1494a30f8f8cSSatish Balay   PetscFunctionBegin;
1495a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1496a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1497a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1498a30f8f8cSSatish Balay }
1499a30f8f8cSSatish Balay EXTERN_C_END
1500a30f8f8cSSatish Balay 
1501273d9f13SBarry Smith EXTERN_C_BEGIN
15024a2ae208SSatish Balay #undef __FUNCT__
1503a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
15041302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1505a23d5eceSKris Buschelman {
1506a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1507dfbe8321SBarry Smith   PetscErrorCode ierr;
15081302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1509a23d5eceSKris Buschelman 
1510a23d5eceSKris Buschelman   PetscFunctionBegin;
1511a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1512a23d5eceSKris Buschelman 
1513a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1514a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1515a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
151677431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
151777431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1518a23d5eceSKris Buschelman   if (d_nnz) {
1519a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
152077431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1521a23d5eceSKris Buschelman     }
1522a23d5eceSKris Buschelman   }
1523a23d5eceSKris Buschelman   if (o_nnz) {
1524a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
152577431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1526a23d5eceSKris Buschelman     }
1527a23d5eceSKris Buschelman   }
1528a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1529a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1530a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1531a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1532a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1533a23d5eceSKris Buschelman 
1534a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1535a23d5eceSKris Buschelman   mbs = B->m/bs;
1536a23d5eceSKris Buschelman   Mbs = B->M/bs;
1537a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
153877431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs);
1539a23d5eceSKris Buschelman   }
1540a23d5eceSKris Buschelman 
1541521d7252SBarry Smith   B->bs  = bs;
1542a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1543a23d5eceSKris Buschelman   b->mbs = mbs;
1544a23d5eceSKris Buschelman   b->nbs = mbs;
1545a23d5eceSKris Buschelman   b->Mbs = Mbs;
1546a23d5eceSKris Buschelman   b->Nbs = Mbs;
1547a23d5eceSKris Buschelman 
1548a7cc72afSBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
1549a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1550a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1551a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1552a23d5eceSKris Buschelman   }
1553a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1554a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1555a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1556a23d5eceSKris Buschelman   b->cend      = b->rend;
1557a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1558a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1559a23d5eceSKris Buschelman   }
1560a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1561a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1562a23d5eceSKris Buschelman 
1563a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1564a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1565a23d5eceSKris Buschelman 
15669c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr);
15679c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1568c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
156952e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
15709c097c71SKris Buschelman 
15719c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr);
15724aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1573589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
157452e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1575a23d5eceSKris Buschelman 
1576a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1577a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1578a23d5eceSKris Buschelman 
1579a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1580a23d5eceSKris Buschelman }
1581a23d5eceSKris Buschelman EXTERN_C_END
1582a23d5eceSKris Buschelman 
15830bad9183SKris Buschelman /*MC
1584fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
15850bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
15860bad9183SKris Buschelman 
15870bad9183SKris Buschelman    Options Database Keys:
15880bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
15890bad9183SKris Buschelman 
15900bad9183SKris Buschelman   Level: beginner
15910bad9183SKris Buschelman 
15920bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
15930bad9183SKris Buschelman M*/
15940bad9183SKris Buschelman 
1595a23d5eceSKris Buschelman EXTERN_C_BEGIN
1596a23d5eceSKris Buschelman #undef __FUNCT__
15974a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1598dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1599b5df2d14SHong Zhang {
1600b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1601dfbe8321SBarry Smith   PetscErrorCode ierr;
1602b5df2d14SHong Zhang   PetscTruth     flg;
1603b5df2d14SHong Zhang 
1604b5df2d14SHong Zhang   PetscFunctionBegin;
1605b5df2d14SHong Zhang 
1606b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1607b0a32e0cSBarry Smith   B->data = (void*)b;
1608b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1609b5df2d14SHong Zhang 
1610b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1611b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1612b5df2d14SHong Zhang   B->mapping    = 0;
1613b5df2d14SHong Zhang   B->factor     = 0;
1614b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1615b5df2d14SHong Zhang 
1616b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1617b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1618b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1619b5df2d14SHong Zhang 
1620b5df2d14SHong Zhang   /* build local table of row and column ownerships */
16211302d50aSBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
1622273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1623273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
162452e6d16bSBarry Smith   ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1625b5df2d14SHong Zhang 
1626b5df2d14SHong Zhang   /* build cache for off array entries formed */
1627b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1628b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1629b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1630b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1631b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1632b5df2d14SHong Zhang 
1633f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1634b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
163564a35ccbSBarry Smith   b->setvalueslen     = 0;
1636b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1637b5df2d14SHong Zhang #endif
1638b5df2d14SHong Zhang 
1639b5df2d14SHong Zhang   /* stuff used in block assembly */
1640b5df2d14SHong Zhang   b->barray       = 0;
1641b5df2d14SHong Zhang 
1642b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1643b5df2d14SHong Zhang   b->lvec         = 0;
1644b5df2d14SHong Zhang   b->Mvctx        = 0;
164540781036SHong Zhang   b->slvec0       = 0;
164640781036SHong Zhang   b->slvec0b      = 0;
164740781036SHong Zhang   b->slvec1       = 0;
164840781036SHong Zhang   b->slvec1a      = 0;
164940781036SHong Zhang   b->slvec1b      = 0;
165040781036SHong Zhang   b->sMvctx       = 0;
1651b5df2d14SHong Zhang 
1652b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1653b5df2d14SHong Zhang   b->rowindices   = 0;
1654b5df2d14SHong Zhang   b->rowvalues    = 0;
1655b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1656b5df2d14SHong Zhang 
1657b5df2d14SHong Zhang   /* hash table stuff */
1658b5df2d14SHong Zhang   b->ht           = 0;
1659b5df2d14SHong Zhang   b->hd           = 0;
1660b5df2d14SHong Zhang   b->ht_size      = 0;
1661b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1662b5df2d14SHong Zhang   b->ht_fact      = 0;
1663b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1664b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1665b5df2d14SHong Zhang 
1666e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1667b5df2d14SHong Zhang   if (flg) {
1668f6275e2eSBarry Smith     PetscReal fact = 1.39;
1669b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1670e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1671b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1672b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
167363ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr);
1674b5df2d14SHong Zhang   }
1675b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1676b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1677b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1678b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1679b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1680b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1681b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1682b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1683b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1684a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1685a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1686a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
168723ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
168823ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
168923ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
169023ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1691b5df2d14SHong Zhang   PetscFunctionReturn(0);
1692b5df2d14SHong Zhang }
1693273d9f13SBarry Smith EXTERN_C_END
1694b5df2d14SHong Zhang 
1695209238afSKris Buschelman /*MC
1696002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1697209238afSKris Buschelman 
1698209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1699209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1700209238afSKris Buschelman 
1701209238afSKris Buschelman    Options Database Keys:
1702209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1703209238afSKris Buschelman 
1704209238afSKris Buschelman   Level: beginner
1705209238afSKris Buschelman 
1706209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1707209238afSKris Buschelman M*/
1708209238afSKris Buschelman 
1709209238afSKris Buschelman EXTERN_C_BEGIN
1710209238afSKris Buschelman #undef __FUNCT__
1711209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1712dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A)
1713dfbe8321SBarry Smith {
17146849ba73SBarry Smith   PetscErrorCode ierr;
17151302d50aSBarry Smith   PetscMPIInt    size;
1716209238afSKris Buschelman 
1717209238afSKris Buschelman   PetscFunctionBegin;
1718209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1719209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1720209238afSKris Buschelman   if (size == 1) {
1721209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1722209238afSKris Buschelman   } else {
1723209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1724209238afSKris Buschelman   }
1725209238afSKris Buschelman   PetscFunctionReturn(0);
1726209238afSKris Buschelman }
1727209238afSKris Buschelman EXTERN_C_END
1728209238afSKris Buschelman 
17294a2ae208SSatish Balay #undef __FUNCT__
17304a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1731b5df2d14SHong Zhang /*@C
1732b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1733b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1734b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1735b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1736b5df2d14SHong Zhang 
1737b5df2d14SHong Zhang    Collective on Mat
1738b5df2d14SHong Zhang 
1739b5df2d14SHong Zhang    Input Parameters:
1740b5df2d14SHong Zhang +  A - the matrix
1741b5df2d14SHong Zhang .  bs   - size of blockk
1742b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1743b5df2d14SHong Zhang            submatrix  (same for all local rows)
1744b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17456d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17466d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17476d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1748b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1749b5df2d14SHong Zhang            submatrix (same for all local rows).
1750b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1751b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1752b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1753b5df2d14SHong Zhang 
1754b5df2d14SHong Zhang 
1755b5df2d14SHong Zhang    Options Database Keys:
1756b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1757b5df2d14SHong Zhang                      block calculations (much slower)
1758b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1759b5df2d14SHong Zhang 
1760b5df2d14SHong Zhang    Notes:
1761b5df2d14SHong Zhang 
1762b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1763b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1764b5df2d14SHong Zhang 
176549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
176649a6f317SBarry Smith 
1767b5df2d14SHong Zhang    Storage Information:
1768b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1769b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1770b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1771b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1772b5df2d14SHong Zhang 
1773b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1774b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1775b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1776b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1777b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1778b5df2d14SHong Zhang 
1779b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1780b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1781b5df2d14SHong Zhang 
1782b5df2d14SHong Zhang .vb
1783b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1784b5df2d14SHong Zhang           -------------------
1785b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1786b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1787b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1788b5df2d14SHong Zhang           -------------------
1789b5df2d14SHong Zhang .ve
1790b5df2d14SHong Zhang 
1791b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1792b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17936d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17946d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1795b5df2d14SHong Zhang 
17966d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
17976d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1798b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1799b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1800b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1801b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1802b5df2d14SHong Zhang    matrices.
1803b5df2d14SHong Zhang 
1804b5df2d14SHong Zhang    Level: intermediate
1805b5df2d14SHong Zhang 
1806b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1807b5df2d14SHong Zhang 
1808b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1809b5df2d14SHong Zhang @*/
18101302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1811b5df2d14SHong Zhang {
18121302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1813b5df2d14SHong Zhang 
1814b5df2d14SHong Zhang   PetscFunctionBegin;
1815a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1816a23d5eceSKris Buschelman   if (f) {
1817a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1818b5df2d14SHong Zhang   }
1819b5df2d14SHong Zhang   PetscFunctionReturn(0);
1820b5df2d14SHong Zhang }
1821b5df2d14SHong Zhang 
18224a2ae208SSatish Balay #undef __FUNCT__
18234a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1824a30f8f8cSSatish Balay /*@C
1825a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1826a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1827a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1828a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1829a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1830a30f8f8cSSatish Balay 
1831a30f8f8cSSatish Balay    Collective on MPI_Comm
1832a30f8f8cSSatish Balay 
1833a30f8f8cSSatish Balay    Input Parameters:
1834a30f8f8cSSatish Balay +  comm - MPI communicator
1835a30f8f8cSSatish Balay .  bs   - size of blockk
1836a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1837a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1838a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1839a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1840a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1841a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1842a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1843a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1844a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1845a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1846a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
18476d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
18486d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
18496d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1850a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1851a30f8f8cSSatish Balay            submatrix (same for all local rows).
1852a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1853a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1854a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1855a30f8f8cSSatish Balay 
1856a30f8f8cSSatish Balay    Output Parameter:
1857a30f8f8cSSatish Balay .  A - the matrix
1858a30f8f8cSSatish Balay 
1859a30f8f8cSSatish Balay    Options Database Keys:
1860a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1861a30f8f8cSSatish Balay                      block calculations (much slower)
1862a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1863a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1864a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1865a30f8f8cSSatish Balay 
1866a30f8f8cSSatish Balay    Notes:
1867d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1868d1be2dadSMatthew Knepley 
1869a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1870a30f8f8cSSatish Balay    (possibly both).
1871a30f8f8cSSatish Balay 
1872a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1873a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1874a30f8f8cSSatish Balay 
187549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
187649a6f317SBarry Smith 
1877a30f8f8cSSatish Balay    Storage Information:
1878a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1879a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1880a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1881a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1882a30f8f8cSSatish Balay 
1883a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1884a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1885a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1886a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1887a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1888a30f8f8cSSatish Balay 
1889a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1890a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1891a30f8f8cSSatish Balay 
1892a30f8f8cSSatish Balay .vb
1893a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1894a30f8f8cSSatish Balay           -------------------
1895a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1896a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1897a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1898a30f8f8cSSatish Balay           -------------------
1899a30f8f8cSSatish Balay .ve
1900a30f8f8cSSatish Balay 
1901a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1902a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19036d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19046d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1905a30f8f8cSSatish Balay 
19066d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19076d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1908a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1909a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1910a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1911a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1912a30f8f8cSSatish Balay    matrices.
1913a30f8f8cSSatish Balay 
1914a30f8f8cSSatish Balay    Level: intermediate
1915a30f8f8cSSatish Balay 
1916a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1917a30f8f8cSSatish Balay 
1918a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1919a30f8f8cSSatish Balay @*/
1920a30f8f8cSSatish Balay 
19211302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
1922a30f8f8cSSatish Balay {
19236849ba73SBarry Smith   PetscErrorCode ierr;
19241302d50aSBarry Smith   PetscMPIInt    size;
1925a30f8f8cSSatish Balay 
1926a30f8f8cSSatish Balay   PetscFunctionBegin;
1927b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
1928273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1929273d9f13SBarry Smith   if (size > 1) {
1930b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1931b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1932273d9f13SBarry Smith   } else {
1933273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1934273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1935273d9f13SBarry Smith   }
1936a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1937a30f8f8cSSatish Balay }
1938a30f8f8cSSatish Balay 
1939a30f8f8cSSatish Balay 
19404a2ae208SSatish Balay #undef __FUNCT__
19414a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
19426849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1943a30f8f8cSSatish Balay {
1944a30f8f8cSSatish Balay   Mat            mat;
1945a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1946dfbe8321SBarry Smith   PetscErrorCode ierr;
1947521d7252SBarry Smith   PetscInt       len=0,nt,bs=matin->bs,mbs=oldmat->mbs;
1948387bc808SHong Zhang   PetscScalar    *array;
1949a30f8f8cSSatish Balay 
1950a30f8f8cSSatish Balay   PetscFunctionBegin;
1951a30f8f8cSSatish Balay   *newmat       = 0;
1952b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
1953be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
19541d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1955e1b6402fSHong Zhang 
195682327fa8SHong Zhang   mat->factor       = matin->factor;
1957273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
195882327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
19597fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
19607fff6886SHong Zhang 
1961b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1962521d7252SBarry Smith   mat->bs  = matin->bs;
1963a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
1964a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
1965a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
1966a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
1967a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
1968a30f8f8cSSatish Balay 
1969a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
1970a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
1971a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
1972a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
1973a30f8f8cSSatish Balay   a->size         = oldmat->size;
1974a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1975a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1976a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1977a30f8f8cSSatish Balay   a->rowindices   = 0;
1978a30f8f8cSSatish Balay   a->rowvalues    = 0;
1979a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1980a30f8f8cSSatish Balay   a->barray       = 0;
1981a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
1982a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
1983a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
1984a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
1985a30f8f8cSSatish Balay 
1986a30f8f8cSSatish Balay   /* hash table stuff */
1987a30f8f8cSSatish Balay   a->ht           = 0;
1988a30f8f8cSSatish Balay   a->hd           = 0;
1989a30f8f8cSSatish Balay   a->ht_size      = 0;
1990a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
1991a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
1992a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
1993a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
1994a30f8f8cSSatish Balay 
19951302d50aSBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
1996a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
1997521d7252SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr);
1998a30f8f8cSSatish Balay   if (oldmat->colmap) {
1999a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2000a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2001a30f8f8cSSatish Balay #else
20021302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
200352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20041302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2005a30f8f8cSSatish Balay #endif
2006a30f8f8cSSatish Balay   } else a->colmap = 0;
2007387bc808SHong Zhang 
2008a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20091302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
201052e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20111302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2012a30f8f8cSSatish Balay   } else a->garray = 0;
2013a30f8f8cSSatish Balay 
2014a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
201552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2016a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
201752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
201882327fa8SHong Zhang 
201982327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
202052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
202182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
202252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2023387bc808SHong Zhang 
2024387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
20251ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2026387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2027387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
20281ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
20291ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2030387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
20311ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
203252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
203352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
203452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
203552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
203652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2037387bc808SHong Zhang 
2038387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2039387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2040387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
204152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
204282327fa8SHong Zhang 
2043a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
204452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2045a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
204652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2047b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2048a30f8f8cSSatish Balay   *newmat = mat;
2049a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2050a30f8f8cSSatish Balay }
2051a30f8f8cSSatish Balay 
2052a30f8f8cSSatish Balay #include "petscsys.h"
2053a30f8f8cSSatish Balay 
20544a2ae208SSatish Balay #undef __FUNCT__
20554a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2056dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat)
2057a30f8f8cSSatish Balay {
2058a30f8f8cSSatish Balay   Mat            A;
20596849ba73SBarry Smith   PetscErrorCode ierr;
206013f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
206187828ca2SBarry Smith   PetscScalar    *vals,*buf;
2062a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2063a30f8f8cSSatish Balay   MPI_Status     status;
206413f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners;
206513f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
206613f74950SBarry Smith   PetscInt       *locrowlens,*procsnz = 0,jj,*mycols,*ibuf;
20671302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
20681302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
20691302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
207013f74950SBarry Smith   int            fd;
2071a30f8f8cSSatish Balay 
2072a30f8f8cSSatish Balay   PetscFunctionBegin;
2073b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2074a30f8f8cSSatish Balay 
2075a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2076a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2077a30f8f8cSSatish Balay   if (!rank) {
2078b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2079a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2080552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2081a30f8f8cSSatish Balay     if (header[3] < 0) {
208229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2083a30f8f8cSSatish Balay     }
2084a30f8f8cSSatish Balay   }
2085a30f8f8cSSatish Balay 
2086a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2087a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2088a30f8f8cSSatish Balay 
208929bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2090a30f8f8cSSatish Balay 
2091a30f8f8cSSatish Balay   /*
2092a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2093a30f8f8cSSatish Balay      divisible by the blocksize
2094a30f8f8cSSatish Balay   */
2095a30f8f8cSSatish Balay   Mbs        = M/bs;
2096a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2097a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2098a30f8f8cSSatish Balay   else                  Mbs++;
2099a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
210063ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr);
2101a30f8f8cSSatish Balay   }
2102a30f8f8cSSatish Balay 
2103a30f8f8cSSatish Balay   /* determine ownership of all rows */
2104a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2105a30f8f8cSSatish Balay   m          = mbs*bs;
2106a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2107a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2108a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2109a30f8f8cSSatish Balay   rowners[0] = 0;
2110a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2111a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2112a30f8f8cSSatish Balay   rstart = rowners[rank];
2113a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2114a30f8f8cSSatish Balay 
2115a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
21161302d50aSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
2117a30f8f8cSSatish Balay   if (!rank) {
21181302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2119a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2120a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2121a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2122a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2123a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2124a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2125a30f8f8cSSatish Balay   } else {
2126a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2127a30f8f8cSSatish Balay   }
2128a30f8f8cSSatish Balay 
21290222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2130a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
21311302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
21321302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2133a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2134a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2135a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2136a30f8f8cSSatish Balay       }
2137a30f8f8cSSatish Balay     }
2138a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2139a30f8f8cSSatish Balay 
2140a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2141a30f8f8cSSatish Balay     maxnz = 0;
2142a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2143a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2144a30f8f8cSSatish Balay     }
21451302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2146a30f8f8cSSatish Balay 
2147a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2148a30f8f8cSSatish Balay     nz     = procsnz[0];
21491302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2150a30f8f8cSSatish Balay     mycols = ibuf;
2151a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2152a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2153a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2154a30f8f8cSSatish Balay 
2155a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2156a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2157a30f8f8cSSatish Balay       nz   = procsnz[i];
2158a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2159a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2160a30f8f8cSSatish Balay     }
2161a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2162a30f8f8cSSatish Balay     if (size != 1) {
2163a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2164a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2165a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2166a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2167a30f8f8cSSatish Balay     }
2168a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21690222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2170a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2171a30f8f8cSSatish Balay     nz = 0;
2172a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2173a30f8f8cSSatish Balay       nz += locrowlens[i];
2174a30f8f8cSSatish Balay     }
21751302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2176a30f8f8cSSatish Balay     mycols = ibuf;
2177a30f8f8cSSatish Balay     /* receive message of column indices*/
2178a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2179a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
218029bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2181a30f8f8cSSatish Balay   }
2182a30f8f8cSSatish Balay 
2183a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
21841302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2185a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
21861302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
21871302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2188a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2189a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2190a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2191a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2192a30f8f8cSSatish Balay     dcount  = 0;
2193a30f8f8cSSatish Balay     odcount = 0;
2194a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2195a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2196a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
21970222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2198a30f8f8cSSatish Balay         if (!mask[tmp]) {
2199a30f8f8cSSatish Balay           mask[tmp] = 1;
22000222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22010222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2202a30f8f8cSSatish Balay         }
2203a30f8f8cSSatish Balay       }
2204a30f8f8cSSatish Balay       rowcount++;
2205a30f8f8cSSatish Balay     }
2206a30f8f8cSSatish Balay 
22070222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22080222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2209a30f8f8cSSatish Balay 
2210a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2211a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2212a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2213a30f8f8cSSatish Balay   }
2214a30f8f8cSSatish Balay 
2215a30f8f8cSSatish Balay   /* create our matrix */
221622191285SKris Buschelman   ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr);
221722191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
221822191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2219273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay 
2221a30f8f8cSSatish Balay   if (!rank) {
222287828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2224a30f8f8cSSatish Balay     nz = procsnz[0];
2225a30f8f8cSSatish Balay     vals = buf;
2226a30f8f8cSSatish Balay     mycols = ibuf;
2227a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2228a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2229a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2230a30f8f8cSSatish Balay 
2231a30f8f8cSSatish Balay     /* insert into matrix */
2232a30f8f8cSSatish Balay     jj      = rstart*bs;
2233a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22347e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2235a30f8f8cSSatish Balay       mycols += locrowlens[i];
2236a30f8f8cSSatish Balay       vals   += locrowlens[i];
2237a30f8f8cSSatish Balay       jj++;
2238a30f8f8cSSatish Balay     }
22397e06b45fSHong Zhang 
2240a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2241a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2242a30f8f8cSSatish Balay       nz   = procsnz[i];
2243a30f8f8cSSatish Balay       vals = buf;
2244a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2245a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2246a30f8f8cSSatish Balay     }
2247a30f8f8cSSatish Balay     /* the last proc */
2248a30f8f8cSSatish Balay     if (size != 1){
2249a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2250a30f8f8cSSatish Balay       vals = buf;
2251a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2252a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2253a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2254a30f8f8cSSatish Balay     }
2255a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22567e06b45fSHong Zhang 
2257a30f8f8cSSatish Balay   } else {
2258a30f8f8cSSatish Balay     /* receive numeric values */
225987828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2260a30f8f8cSSatish Balay 
2261a30f8f8cSSatish Balay     /* receive message of values*/
2262a30f8f8cSSatish Balay     vals   = buf;
2263a30f8f8cSSatish Balay     mycols = ibuf;
2264a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
226629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2267a30f8f8cSSatish Balay 
2268a30f8f8cSSatish Balay     /* insert into matrix */
2269a30f8f8cSSatish Balay     jj      = rstart*bs;
2270a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2271a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2272a30f8f8cSSatish Balay       mycols += locrowlens[i];
2273a30f8f8cSSatish Balay       vals   += locrowlens[i];
2274a30f8f8cSSatish Balay       jj++;
2275a30f8f8cSSatish Balay     }
2276a30f8f8cSSatish Balay   }
22777e06b45fSHong Zhang 
2278a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2279a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2280a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2281a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2282a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2283a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2284a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2285a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
228622191285SKris Buschelman   *newmat = A;
2287a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2288a30f8f8cSSatish Balay }
2289a30f8f8cSSatish Balay 
22904a2ae208SSatish Balay #undef __FUNCT__
22914a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2292dcf5cc72SBarry Smith /*XXXXX@
2293a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2294a30f8f8cSSatish Balay 
2295a30f8f8cSSatish Balay    Input Parameters:
2296a30f8f8cSSatish Balay .  mat  - the matrix
2297a30f8f8cSSatish Balay .  fact - factor
2298a30f8f8cSSatish Balay 
2299a30f8f8cSSatish Balay    Collective on Mat
2300a30f8f8cSSatish Balay 
2301a30f8f8cSSatish Balay    Level: advanced
2302a30f8f8cSSatish Balay 
2303a30f8f8cSSatish Balay   Notes:
2304a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2305a30f8f8cSSatish Balay 
2306a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2307a30f8f8cSSatish Balay 
2308a30f8f8cSSatish Balay .seealso: MatSetOption()
2309dcf5cc72SBarry Smith @XXXXX*/
2310dcf5cc72SBarry Smith 
231124d5174aSHong Zhang 
23124a2ae208SSatish Balay #undef __FUNCT__
23134a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2314dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
231524d5174aSHong Zhang {
231624d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2317f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2318ca54ac64SHong Zhang   PetscReal      atmp;
231987828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2320dfbe8321SBarry Smith   PetscErrorCode ierr;
23211302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
23221302d50aSBarry Smith   PetscMPIInt    rank,size;
23231302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
232487828ca2SBarry Smith   PetscScalar    *va;
23258a1c53f2SBarry Smith   MatScalar      *ba;
2326f4c0e9e4SHong Zhang   MPI_Status     stat;
232724d5174aSHong Zhang 
232824d5174aSHong Zhang   PetscFunctionBegin;
2329d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
23301ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2331f4c0e9e4SHong Zhang 
233256faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
233356faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2334f4c0e9e4SHong Zhang 
2335521d7252SBarry Smith   bs   = A->bs;
2336f4c0e9e4SHong Zhang   mbs  = a->mbs;
2337f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2338f4c0e9e4SHong Zhang   ba   = b->a;
2339f4c0e9e4SHong Zhang   bi   = b->i;
2340f4c0e9e4SHong Zhang   bj   = b->j;
2341f4c0e9e4SHong Zhang 
2342f4c0e9e4SHong Zhang   /* find ownerships */
2343f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2344f4c0e9e4SHong Zhang 
2345f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
234682502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2347ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2348f4c0e9e4SHong Zhang 
2349f4c0e9e4SHong Zhang   /* row_max for B */
2350b8475685SHong Zhang   if (rank != size-1){
2351f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2352f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2353f4c0e9e4SHong Zhang       brow  = bs*i;
2354f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2355f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2356f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2357ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
235804d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2359f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2360f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2361ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2362ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2363f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2364f4c0e9e4SHong Zhang           }
2365f4c0e9e4SHong Zhang         }
2366f4c0e9e4SHong Zhang         bj++;
2367f4c0e9e4SHong Zhang       }
2368f4c0e9e4SHong Zhang     }
2369f4c0e9e4SHong Zhang 
2370f4c0e9e4SHong Zhang     /* send values to its owners */
2371f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2372f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2373ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
237456faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2375ca54ac64SHong Zhang     }
2376f4c0e9e4SHong Zhang   }
2377f4c0e9e4SHong Zhang 
2378f4c0e9e4SHong Zhang   /* receive values */
2379ca54ac64SHong Zhang   if (rank){
2380f4c0e9e4SHong Zhang     rvalues = work;
2381ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2382f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
238356faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2384f4c0e9e4SHong Zhang       /* process values */
2385f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2386ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2387f4c0e9e4SHong Zhang       }
2388f4c0e9e4SHong Zhang     }
2389ca54ac64SHong Zhang   }
2390f4c0e9e4SHong Zhang 
23911ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2392ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
239324d5174aSHong Zhang   PetscFunctionReturn(0);
239424d5174aSHong Zhang }
23952798e883SHong Zhang 
23962798e883SHong Zhang #undef __FUNCT__
23972798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
23981302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
23992798e883SHong Zhang {
24002798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2401dfbe8321SBarry Smith   PetscErrorCode ierr;
2402521d7252SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->bs;
2403ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2404ffe4fb16SHong Zhang   Vec            bb1;
2405ffe4fb16SHong Zhang 
2406ffe4fb16SHong Zhang   PetscFunctionBegin;
240777431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2408ffe4fb16SHong Zhang   if (bs > 1)
2409ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2410ffe4fb16SHong Zhang 
2411ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2412ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2413ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2414ffe4fb16SHong Zhang       its--;
2415ffe4fb16SHong Zhang     }
2416ffe4fb16SHong Zhang 
2417ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2418ffe4fb16SHong Zhang     while (its--){
2419ffe4fb16SHong Zhang 
2420ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2421ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2422ffe4fb16SHong Zhang 
2423ffe4fb16SHong Zhang       /* copy xx into slvec0a */
24241ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
24251ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2426ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24271ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2428ffe4fb16SHong Zhang 
2429ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2430ffe4fb16SHong Zhang 
2431ffe4fb16SHong Zhang       /* copy bb into slvec1a */
24321ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
24331ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2434ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24351ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2436ffe4fb16SHong Zhang 
2437ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2438ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2439ffe4fb16SHong Zhang 
2440ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
24411ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
24421ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2443ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2444ffe4fb16SHong Zhang 
2445ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2446ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2447ffe4fb16SHong Zhang 
2448ffe4fb16SHong Zhang       /* local diagonal sweep */
2449ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2450ffe4fb16SHong Zhang     }
2451ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2452ffe4fb16SHong Zhang   } else {
2453ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2454ffe4fb16SHong Zhang   }
2455ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2456ffe4fb16SHong Zhang }
2457ffe4fb16SHong Zhang 
2458ffe4fb16SHong Zhang #undef __FUNCT__
2459ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
24601302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2461ffe4fb16SHong Zhang {
2462ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2463dfbe8321SBarry Smith   PetscErrorCode ierr;
2464d05c616dSSatish Balay   PetscScalar    mone=-1.0;
24652798e883SHong Zhang   Vec            lvec1,bb1;
24662798e883SHong Zhang 
24672798e883SHong Zhang   PetscFunctionBegin;
246877431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2469521d7252SBarry Smith   if (matin->bs > 1)
24702798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
24712798e883SHong Zhang 
2472c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
24732798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2474bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
24752798e883SHong Zhang       its--;
24762798e883SHong Zhang     }
24772798e883SHong Zhang 
24782798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
24792798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24802798e883SHong Zhang     while (its--){
24812798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24822798e883SHong Zhang 
24832798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
24842798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
24852798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
24862798e883SHong Zhang 
24872798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24882798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
24892798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24902798e883SHong Zhang 
24912798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
24922798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
24932798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
24942798e883SHong Zhang 
24952798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24962798e883SHong Zhang 
2497c14dc6b6SHong Zhang       /* diagonal sweep */
2498bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
24992798e883SHong Zhang     }
25002798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25012798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2502c14dc6b6SHong Zhang   } else {
2503c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2504c14dc6b6SHong Zhang   }
25052798e883SHong Zhang   PetscFunctionReturn(0);
25062798e883SHong Zhang }
25072798e883SHong Zhang 
2508