1a30f8f8cSSatish Balay 2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 3a30f8f8cSSatish Balay #include "mpisbaij.h" 4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 5a30f8f8cSSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 10177431f27SBarry Smith else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102a30f8f8cSSatish Balay if (nrow >= rmax) { \ 103a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1041302d50aSBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 105a30f8f8cSSatish Balay MatScalar *new_a; \ 106a30f8f8cSSatish Balay \ 10777431f27SBarry Smith if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 108a30f8f8cSSatish Balay \ 109a30f8f8cSSatish Balay /* malloc new storage space */ \ 1101302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 11182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1121302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 113a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 114a30f8f8cSSatish Balay \ 115a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 116a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 117a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 1181302d50aSBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1201302d50aSBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12287828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 124a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay /* free up old matrix storage */ \ 126a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 128a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 130a30f8f8cSSatish Balay } \ 131a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 132a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 133a30f8f8cSSatish Balay \ 134a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 135a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 13652e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \ 1376c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 138a30f8f8cSSatish Balay a->reallocs++; \ 1396c6c5352SBarry Smith a->nz++; \ 140a30f8f8cSSatish Balay } \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay a_noinsert:; \ 151a30f8f8cSSatish Balay ailen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 154a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 155a30f8f8cSSatish Balay { \ 156a30f8f8cSSatish Balay brow = row/bs; \ 157a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 158a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 159a30f8f8cSSatish Balay bcol = col/bs; \ 160a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 161a30f8f8cSSatish Balay low = 0; high = nrow; \ 162a30f8f8cSSatish Balay while (high-low > 3) { \ 163a30f8f8cSSatish Balay t = (low+high)/2; \ 164a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 165a30f8f8cSSatish Balay else low = t; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 168a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 169a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 170a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 171a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 172a30f8f8cSSatish Balay else *bap = value; \ 173a30f8f8cSSatish Balay goto b_noinsert; \ 174a30f8f8cSSatish Balay } \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 17777431f27SBarry Smith else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 178a30f8f8cSSatish Balay if (nrow >= rmax) { \ 179a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1801302d50aSBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 181a30f8f8cSSatish Balay MatScalar *new_a; \ 182a30f8f8cSSatish Balay \ 18377431f27SBarry Smith if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 184a30f8f8cSSatish Balay \ 185a30f8f8cSSatish Balay /* malloc new storage space */ \ 1861302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 18782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1881302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 189a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 190a30f8f8cSSatish Balay \ 191a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 192a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 193a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 1941302d50aSBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 195a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 1961302d50aSBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 200a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay /* free up old matrix storage */ \ 202a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 204a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 208a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 209a30f8f8cSSatish Balay \ 210a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 211a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 21252e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 214a30f8f8cSSatish Balay b->reallocs++; \ 215a30f8f8cSSatish Balay b->nz++; \ 216a30f8f8cSSatish Balay } \ 217a30f8f8cSSatish Balay N = nrow++ - 1; \ 218a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 219a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 220a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 221a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 224a30f8f8cSSatish Balay rp[_i] = bcol; \ 225a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 226a30f8f8cSSatish Balay b_noinsert:; \ 227a30f8f8cSSatish Balay bilen[brow] = nrow; \ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay #endif 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 235a30f8f8cSSatish Balay { 236a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 237dfbe8321SBarry Smith PetscErrorCode ierr; 2381302d50aSBarry Smith PetscInt i,N = m*n; 239a30f8f8cSSatish Balay MatScalar *vsingle; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay PetscFunctionBegin; 242a30f8f8cSSatish Balay if (N > b->setvalueslen) { 243a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 245a30f8f8cSSatish Balay b->setvalueslen = N; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay for (i=0; i<N; i++) { 250a30f8f8cSSatish Balay vsingle[i] = v[i]; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 260a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 261dfbe8321SBarry Smith PetscErrorCode ierr; 2621302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 263a30f8f8cSSatish Balay MatScalar *vsingle; 264a30f8f8cSSatish Balay 265a30f8f8cSSatish Balay PetscFunctionBegin; 266a30f8f8cSSatish Balay if (N > b->setvalueslen) { 267a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 269a30f8f8cSSatish Balay b->setvalueslen = N; 270a30f8f8cSSatish Balay } 271a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 272a30f8f8cSSatish Balay for (i=0; i<N; i++) { 273a30f8f8cSSatish Balay vsingle[i] = v[i]; 274a30f8f8cSSatish Balay } 275a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 276a30f8f8cSSatish Balay PetscFunctionReturn(0); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay #endif 279a30f8f8cSSatish Balay 280a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 281a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 282a30f8f8cSSatish Balay */ 2834a2ae208SSatish Balay #undef __FUNCT__ 284e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 2851302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 286a30f8f8cSSatish Balay { 287a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 288a30f8f8cSSatish Balay MatScalar value; 289b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 290dfbe8321SBarry Smith PetscErrorCode ierr; 2911302d50aSBarry Smith PetscInt i,j,row,col; 2921302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 2931302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 294521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 295a30f8f8cSSatish Balay 296a30f8f8cSSatish Balay /* Some Variables required in the macro */ 297a30f8f8cSSatish Balay Mat A = baij->A; 298a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2991302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 300a30f8f8cSSatish Balay MatScalar *aa=a->a; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay Mat B = baij->B; 303a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 3041302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 305a30f8f8cSSatish Balay MatScalar *ba=b->a; 306a30f8f8cSSatish Balay 3071302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 3081302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 309a30f8f8cSSatish Balay MatScalar *ap,*bap; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay /* for stash */ 3121302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 313f65c83cfSHong Zhang MatScalar *v_loc=0; 314a30f8f8cSSatish Balay 315a30f8f8cSSatish Balay PetscFunctionBegin; 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay if(!baij->donotstash){ 3181302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 31982502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay 322a30f8f8cSSatish Balay for (i=0; i<m; i++) { 323a30f8f8cSSatish Balay if (im[i] < 0) continue; 3242515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 32577431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 326a30f8f8cSSatish Balay #endif 327a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 328a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 329a30f8f8cSSatish Balay for (j=0; j<n; j++) { 330f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 331a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 332a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 333a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 334a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 335a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 336a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 337a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 338a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 34077431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 341a30f8f8cSSatish Balay #endif 342a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 343a30f8f8cSSatish Balay if (mat->was_assembled) { 344a30f8f8cSSatish Balay if (!baij->colmap) { 345653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 346a30f8f8cSSatish Balay } 347a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 348a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 34971730473SSatish Balay col = col - 1; 350a30f8f8cSSatish Balay #else 35171730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 352a30f8f8cSSatish Balay #endif 353a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 354a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 355a30f8f8cSSatish Balay col = in[j]; 356a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 357a30f8f8cSSatish Balay B = baij->B; 358a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 359a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 360a30f8f8cSSatish Balay ba=b->a; 36171730473SSatish Balay } else col += in[j]%bs; 362a30f8f8cSSatish Balay } else col = in[j]; 363a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 364a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 365a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 366a30f8f8cSSatish Balay } 367a30f8f8cSSatish Balay } 368a30f8f8cSSatish Balay } else { /* off processor entry */ 369a30f8f8cSSatish Balay if (!baij->donotstash) { 370a30f8f8cSSatish Balay n_loc = 0; 371a30f8f8cSSatish Balay for (j=0; j<n; j++){ 372f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 373a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 374a30f8f8cSSatish Balay if (roworiented) { 375a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 376a30f8f8cSSatish Balay } else { 377a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 378a30f8f8cSSatish Balay } 379a30f8f8cSSatish Balay n_loc++; 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay } 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay 386a30f8f8cSSatish Balay if(!baij->donotstash){ 387a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 388a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 389a30f8f8cSSatish Balay } 390a30f8f8cSSatish Balay PetscFunctionReturn(0); 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay 3934a2ae208SSatish Balay #undef __FUNCT__ 394e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 396a30f8f8cSSatish Balay { 3970880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 398f15d580aSBarry Smith const MatScalar *value; 399f15d580aSBarry Smith MatScalar *barray=baij->barray; 4000880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 401dfbe8321SBarry Smith PetscErrorCode ierr; 4021302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 4031302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 404521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 4050880e062SHong Zhang 406a30f8f8cSSatish Balay PetscFunctionBegin; 4070880e062SHong Zhang if(!barray) { 4080880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4090880e062SHong Zhang baij->barray = barray; 4100880e062SHong Zhang } 4110880e062SHong Zhang 4120880e062SHong Zhang if (roworiented) { 4130880e062SHong Zhang stepval = (n-1)*bs; 4140880e062SHong Zhang } else { 4150880e062SHong Zhang stepval = (m-1)*bs; 4160880e062SHong Zhang } 4170880e062SHong Zhang for (i=0; i<m; i++) { 4180880e062SHong Zhang if (im[i] < 0) continue; 4192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 42077431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 4210880e062SHong Zhang #endif 4220880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4230880e062SHong Zhang row = im[i] - rstart; 4240880e062SHong Zhang for (j=0; j<n; j++) { 4250880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4260880e062SHong Zhang if ((roworiented) && (n == 1)) { 427f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4280880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 429f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4300880e062SHong Zhang } else { /* Here a copy is required */ 4310880e062SHong Zhang if (roworiented) { 4320880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4330880e062SHong Zhang } else { 4340880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4350880e062SHong Zhang } 4360880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4370880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4380880e062SHong Zhang *barray++ = *value++; 4390880e062SHong Zhang } 4400880e062SHong Zhang } 4410880e062SHong Zhang barray -=bs2; 4420880e062SHong Zhang } 4430880e062SHong Zhang 4440880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4450880e062SHong Zhang col = in[j] - cstart; 4460880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4470880e062SHong Zhang } 4480880e062SHong Zhang else if (in[j] < 0) continue; 4492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 45077431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 4510880e062SHong Zhang #endif 4520880e062SHong Zhang else { 4530880e062SHong Zhang if (mat->was_assembled) { 4540880e062SHong Zhang if (!baij->colmap) { 455653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4560880e062SHong Zhang } 4570880e062SHong Zhang 4582515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 4590880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4601302d50aSBarry Smith { PetscInt data; 4610880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4620880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4630880e062SHong Zhang } 4640880e062SHong Zhang #else 4650880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4660880e062SHong Zhang #endif 4670880e062SHong Zhang #endif 4680880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4690880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4700880e062SHong Zhang col = (col - 1)/bs; 4710880e062SHong Zhang #else 4720880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4730880e062SHong Zhang #endif 4740880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4750880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4760880e062SHong Zhang col = in[j]; 4770880e062SHong Zhang } 4780880e062SHong Zhang } 4790880e062SHong Zhang else col = in[j]; 480e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4810880e062SHong Zhang } 4820880e062SHong Zhang } 4830880e062SHong Zhang } else { 4840880e062SHong Zhang if (!baij->donotstash) { 4850880e062SHong Zhang if (roworiented) { 4860880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4870880e062SHong Zhang } else { 4880880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4890880e062SHong Zhang } 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang } 4930880e062SHong Zhang PetscFunctionReturn(0); 494a30f8f8cSSatish Balay } 495a30f8f8cSSatish Balay 4964a2ae208SSatish Balay #undef __FUNCT__ 4974a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4981302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 499a30f8f8cSSatish Balay { 500f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5016849ba73SBarry Smith PetscErrorCode ierr; 502521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 5031302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 504a30f8f8cSSatish Balay 505a30f8f8cSSatish Balay PetscFunctionBegin; 506a30f8f8cSSatish Balay for (i=0; i<m; i++) { 50777431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 50877431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 509a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 510a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 511a30f8f8cSSatish Balay for (j=0; j<n; j++) { 51277431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 51377431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 514a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 515a30f8f8cSSatish Balay col = idxn[j] - bscstart; 516c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 517a30f8f8cSSatish Balay } else { 518a30f8f8cSSatish Balay if (!baij->colmap) { 519653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 520a30f8f8cSSatish Balay } 521a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 522a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 523a30f8f8cSSatish Balay data --; 524a30f8f8cSSatish Balay #else 525a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 526a30f8f8cSSatish Balay #endif 527a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 528a30f8f8cSSatish Balay else { 529a30f8f8cSSatish Balay col = data + idxn[j]%bs; 530e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 531a30f8f8cSSatish Balay } 532a30f8f8cSSatish Balay } 533a30f8f8cSSatish Balay } 534a30f8f8cSSatish Balay } else { 53529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 536a30f8f8cSSatish Balay } 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay PetscFunctionReturn(0); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay 5414a2ae208SSatish Balay #undef __FUNCT__ 5424a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 543dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 544a30f8f8cSSatish Balay { 545a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 546dfbe8321SBarry Smith PetscErrorCode ierr; 547a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 548a30f8f8cSSatish Balay 549a30f8f8cSSatish Balay PetscFunctionBegin; 550a30f8f8cSSatish Balay if (baij->size == 1) { 551a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 552a30f8f8cSSatish Balay } else { 553a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 554f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 555a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 556a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 557a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 558a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 559d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 560a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 561a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 562*0b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 563*0b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 564*0b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 565*0b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 566*0b8dc8d2SHong Zhang PetscInt *jj,*garray=baij->garray,rstart=baij->rstart,nz; 567*0b8dc8d2SHong Zhang PetscInt brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs; 568*0b8dc8d2SHong Zhang MatScalar *v; 569*0b8dc8d2SHong Zhang 570*0b8dc8d2SHong Zhang ierr = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 571*0b8dc8d2SHong Zhang rsum2 = rsum + mat->N; 572*0b8dc8d2SHong Zhang ierr = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr); 573*0b8dc8d2SHong Zhang /* Amat */ 574*0b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 575*0b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 576*0b8dc8d2SHong Zhang grow = bs*(rstart + brow); 577*0b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 578*0b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 579*0b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 580*0b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 581*0b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 582*0b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 583*0b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 584*0b8dc8d2SHong Zhang /* non-diagonal block */ 585*0b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 586*0b8dc8d2SHong Zhang } 587*0b8dc8d2SHong Zhang } 588*0b8dc8d2SHong Zhang } 589*0b8dc8d2SHong Zhang } 590*0b8dc8d2SHong Zhang /* Bmat */ 591*0b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 592*0b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 593*0b8dc8d2SHong Zhang grow = bs*(rstart + brow); 594*0b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 595*0b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 596*0b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 597*0b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 598*0b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 599*0b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 600*0b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 601*0b8dc8d2SHong Zhang rsum[grow+row] += vabs; 602*0b8dc8d2SHong Zhang } 603*0b8dc8d2SHong Zhang } 604*0b8dc8d2SHong Zhang } 605*0b8dc8d2SHong Zhang } 606*0b8dc8d2SHong Zhang ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 607*0b8dc8d2SHong Zhang *norm = 0.0; 608*0b8dc8d2SHong Zhang for (col=0; col<mat->N; col++) { 609*0b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 610*0b8dc8d2SHong Zhang } 611*0b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 612a30f8f8cSSatish Balay } else { 61329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 614a30f8f8cSSatish Balay } 615a30f8f8cSSatish Balay } 616a30f8f8cSSatish Balay PetscFunctionReturn(0); 617a30f8f8cSSatish Balay } 618a30f8f8cSSatish Balay 6194a2ae208SSatish Balay #undef __FUNCT__ 6204a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 621dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 622a30f8f8cSSatish Balay { 623a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 624dfbe8321SBarry Smith PetscErrorCode ierr; 6251302d50aSBarry Smith PetscInt nstash,reallocs; 626a30f8f8cSSatish Balay InsertMode addv; 627a30f8f8cSSatish Balay 628a30f8f8cSSatish Balay PetscFunctionBegin; 629a30f8f8cSSatish Balay if (baij->donotstash) { 630a30f8f8cSSatish Balay PetscFunctionReturn(0); 631a30f8f8cSSatish Balay } 632a30f8f8cSSatish Balay 633a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 634a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 635a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 63629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 637a30f8f8cSSatish Balay } 638a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 639a30f8f8cSSatish Balay 640a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 641a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 642a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 64363ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 644a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 64563ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 646a30f8f8cSSatish Balay PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay 6494a2ae208SSatish Balay #undef __FUNCT__ 6504a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 651dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 652a30f8f8cSSatish Balay { 653a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 654a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 655a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 6566849ba73SBarry Smith PetscErrorCode ierr; 65713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 6581302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 65913f74950SBarry Smith PetscMPIInt n; 660a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 661a30f8f8cSSatish Balay MatScalar *val; 662a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 663a30f8f8cSSatish Balay 664a30f8f8cSSatish Balay PetscFunctionBegin; 665a30f8f8cSSatish Balay 666a30f8f8cSSatish Balay if (!baij->donotstash) { 667a30f8f8cSSatish Balay while (1) { 668a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 669a30f8f8cSSatish Balay if (!flg) break; 670a30f8f8cSSatish Balay 671a30f8f8cSSatish Balay for (i=0; i<n;) { 672a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 673a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 674a30f8f8cSSatish Balay if (j < n) ncols = j-i; 675a30f8f8cSSatish Balay else ncols = n-i; 676a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 677a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 678a30f8f8cSSatish Balay i = j; 679a30f8f8cSSatish Balay } 680a30f8f8cSSatish Balay } 681a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 682a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 683a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 684a30f8f8cSSatish Balay restore the original flags */ 685a30f8f8cSSatish Balay r1 = baij->roworiented; 686a30f8f8cSSatish Balay r2 = a->roworiented; 687a30f8f8cSSatish Balay r3 = b->roworiented; 688a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 689a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 690a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 691a30f8f8cSSatish Balay while (1) { 692a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 693a30f8f8cSSatish Balay if (!flg) break; 694a30f8f8cSSatish Balay 695a30f8f8cSSatish Balay for (i=0; i<n;) { 696a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 697a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 698a30f8f8cSSatish Balay if (j < n) ncols = j-i; 699a30f8f8cSSatish Balay else ncols = n-i; 700a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 701a30f8f8cSSatish Balay i = j; 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 705a30f8f8cSSatish Balay baij->roworiented = r1; 706a30f8f8cSSatish Balay a->roworiented = r2; 707a30f8f8cSSatish Balay b->roworiented = r3; 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay 710a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 711a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 712a30f8f8cSSatish Balay 713a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 714a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 715a30f8f8cSSatish Balay /* 716a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 717a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 718a30f8f8cSSatish Balay */ 719a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 720a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 721a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 722c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay } 725a30f8f8cSSatish Balay 726a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 72740781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 728a30f8f8cSSatish Balay } 7294eb6d288SHong Zhang b->compressedrow.use = PETSC_TRUE; 730a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 731a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 732a30f8f8cSSatish Balay 733a30f8f8cSSatish Balay if (baij->rowvalues) { 734a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 735a30f8f8cSSatish Balay baij->rowvalues = 0; 736a30f8f8cSSatish Balay } 7375222a1afSHong Zhang 738a30f8f8cSSatish Balay PetscFunctionReturn(0); 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay 7414a2ae208SSatish Balay #undef __FUNCT__ 7424a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7436849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 744a30f8f8cSSatish Balay { 745a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 746dfbe8321SBarry Smith PetscErrorCode ierr; 747521d7252SBarry Smith PetscInt bs = mat->bs; 7481302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 74932077d6dSBarry Smith PetscTruth iascii,isdraw; 750b0a32e0cSBarry Smith PetscViewer sviewer; 751f3ef73ceSBarry Smith PetscViewerFormat format; 752a30f8f8cSSatish Balay 753a30f8f8cSSatish Balay PetscFunctionBegin; 75432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 755fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 75632077d6dSBarry Smith if (iascii) { 757b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 758456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 759a30f8f8cSSatish Balay MatInfo info; 760a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 761a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 76277431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 76377431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 764521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 765a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 76677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 767a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 76877431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 769b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 770a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 771a30f8f8cSSatish Balay PetscFunctionReturn(0); 772fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 77377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 774a30f8f8cSSatish Balay PetscFunctionReturn(0); 775a30f8f8cSSatish Balay } 776a30f8f8cSSatish Balay } 777a30f8f8cSSatish Balay 778a30f8f8cSSatish Balay if (isdraw) { 779b0a32e0cSBarry Smith PetscDraw draw; 780a30f8f8cSSatish Balay PetscTruth isnull; 781b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 782b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 783a30f8f8cSSatish Balay } 784a30f8f8cSSatish Balay 785a30f8f8cSSatish Balay if (size == 1) { 786e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 787a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 788a30f8f8cSSatish Balay } else { 789a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 790a30f8f8cSSatish Balay Mat A; 79165d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 79265d70643SHong Zhang Mat_SeqBAIJ *Bloc; 7931302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 794a30f8f8cSSatish Balay MatScalar *a; 795a30f8f8cSSatish Balay 796f204ca49SKris Buschelman /* Should this be the same type as mat? */ 797a30f8f8cSSatish Balay if (!rank) { 798f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 799a30f8f8cSSatish Balay } else { 800f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 801a30f8f8cSSatish Balay } 802f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 803521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 80452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 805a30f8f8cSSatish Balay 806a30f8f8cSSatish Balay /* copy over the A part */ 80765d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 808a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 8091302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 810a30f8f8cSSatish Balay 811a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 812a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 813a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 814a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 815a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 816a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 817a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 818a30f8f8cSSatish Balay col++; a += bs; 819a30f8f8cSSatish Balay } 820a30f8f8cSSatish Balay } 821a30f8f8cSSatish Balay } 822a30f8f8cSSatish Balay /* copy over the B part */ 82365d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 82465d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 825a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 826a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 827a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 828a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 829a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 830a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 831a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 832a30f8f8cSSatish Balay col++; a += bs; 833a30f8f8cSSatish Balay } 834a30f8f8cSSatish Balay } 835a30f8f8cSSatish Balay } 836a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 837a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 838a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 839a30f8f8cSSatish Balay /* 840a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 841b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 842a30f8f8cSSatish Balay */ 843b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 84465d70643SHong Zhang if (!rank) { 845e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 846a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 847a30f8f8cSSatish Balay } 848b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 849a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 850a30f8f8cSSatish Balay } 851a30f8f8cSSatish Balay PetscFunctionReturn(0); 852a30f8f8cSSatish Balay } 853a30f8f8cSSatish Balay 8544a2ae208SSatish Balay #undef __FUNCT__ 8554a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 856dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 857a30f8f8cSSatish Balay { 858dfbe8321SBarry Smith PetscErrorCode ierr; 85932077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 860a30f8f8cSSatish Balay 861a30f8f8cSSatish Balay PetscFunctionBegin; 86232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 863fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 864b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 865fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 86632077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 867a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 868a30f8f8cSSatish Balay } else { 8691302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 870a30f8f8cSSatish Balay } 871a30f8f8cSSatish Balay PetscFunctionReturn(0); 872a30f8f8cSSatish Balay } 873a30f8f8cSSatish Balay 8744a2ae208SSatish Balay #undef __FUNCT__ 8754a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 876dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 877a30f8f8cSSatish Balay { 878a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 879dfbe8321SBarry Smith PetscErrorCode ierr; 880a30f8f8cSSatish Balay 881a30f8f8cSSatish Balay PetscFunctionBegin; 882a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 88377431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 884a30f8f8cSSatish Balay #endif 885a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 886a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 887a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 888a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 889a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 890a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 891a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 892a30f8f8cSSatish Balay #else 893a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 894a30f8f8cSSatish Balay #endif 895a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 896a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 897a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 89840781036SHong Zhang if (baij->slvec0) { 89940781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 90040781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 90140781036SHong Zhang } 90240781036SHong Zhang if (baij->slvec1) { 90340781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 90440781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 90540781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 90640781036SHong Zhang } 90740781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 908a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 909a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 910a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 911a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 912a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 913a30f8f8cSSatish Balay #endif 914a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 915901853e0SKris Buschelman 916901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 917901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 918901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 919901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 920a30f8f8cSSatish Balay PetscFunctionReturn(0); 921a30f8f8cSSatish Balay } 922a30f8f8cSSatish Balay 9234a2ae208SSatish Balay #undef __FUNCT__ 924a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 925dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 926a9d4b620SHong Zhang { 927a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 928dfbe8321SBarry Smith PetscErrorCode ierr; 929521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 930a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 931a9d4b620SHong Zhang 932a9d4b620SHong Zhang PetscFunctionBegin; 933a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 934a9d4b620SHong Zhang if (nt != A->n) { 935a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 936a9d4b620SHong Zhang } 937a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 938a9d4b620SHong Zhang if (nt != A->m) { 939a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 940a9d4b620SHong Zhang } 941a9d4b620SHong Zhang 942a9d4b620SHong Zhang /* diagonal part */ 943a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 944a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 945a9d4b620SHong Zhang 946a9d4b620SHong Zhang /* subdiagonal part */ 947a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 948a9d4b620SHong Zhang 949a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9501ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9511ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 952a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9531ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 954a9d4b620SHong Zhang 955a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9561ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 957a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 958a9d4b620SHong Zhang 959a9d4b620SHong Zhang /* supperdiagonal part */ 960a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 961a9d4b620SHong Zhang 962a9d4b620SHong Zhang PetscFunctionReturn(0); 963a9d4b620SHong Zhang } 964a9d4b620SHong Zhang 965a9d4b620SHong Zhang #undef __FUNCT__ 96640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 967dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 968a30f8f8cSSatish Balay { 969a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 970dfbe8321SBarry Smith PetscErrorCode ierr; 9711302d50aSBarry Smith PetscInt nt; 972a30f8f8cSSatish Balay 973a30f8f8cSSatish Balay PetscFunctionBegin; 974a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 975b5df2d14SHong Zhang if (nt != A->n) { 97629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 977a30f8f8cSSatish Balay } 978a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 979b5df2d14SHong Zhang if (nt != A->m) { 98029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 981a30f8f8cSSatish Balay } 98265d70643SHong Zhang 983b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 984b941877fSHong Zhang /* do diagonal part */ 985b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 986b941877fSHong Zhang /* do supperdiagonal part */ 987b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 988b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 989b941877fSHong Zhang /* do subdiagonal part */ 990b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 991b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 992b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 99365d70643SHong Zhang 994a30f8f8cSSatish Balay PetscFunctionReturn(0); 995a30f8f8cSSatish Balay } 996a30f8f8cSSatish Balay 9974a2ae208SSatish Balay #undef __FUNCT__ 9984a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 999dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1000a30f8f8cSSatish Balay { 1001de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1002dfbe8321SBarry Smith PetscErrorCode ierr; 1003521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 1004a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1005a9d4b620SHong Zhang 1006a9d4b620SHong Zhang PetscFunctionBegin; 1007a9d4b620SHong Zhang /* 100856faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 100956faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1010a9d4b620SHong Zhang */ 1011a9d4b620SHong Zhang /* diagonal part */ 1012a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1013a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1014a9d4b620SHong Zhang 1015a9d4b620SHong Zhang /* subdiagonal part */ 1016a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1017a9d4b620SHong Zhang 1018a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10191ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10201ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1021a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 10221ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1023a9d4b620SHong Zhang 1024a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 10251ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1026a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1027a9d4b620SHong Zhang 1028a9d4b620SHong Zhang /* supperdiagonal part */ 1029a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1030a9d4b620SHong Zhang 1031a9d4b620SHong Zhang PetscFunctionReturn(0); 1032a9d4b620SHong Zhang } 1033a9d4b620SHong Zhang 1034a9d4b620SHong Zhang #undef __FUNCT__ 1035a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1036dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1037a9d4b620SHong Zhang { 1038a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1039dfbe8321SBarry Smith PetscErrorCode ierr; 1040a30f8f8cSSatish Balay 1041a30f8f8cSSatish Balay PetscFunctionBegin; 1042b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1043b941877fSHong Zhang /* do diagonal part */ 1044b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1045b941877fSHong Zhang /* do supperdiagonal part */ 1046b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1047de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1048de8b6608SHong Zhang 1049b941877fSHong Zhang /* do subdiagonal part */ 1050a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1051a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1052a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1053aa482183SHong Zhang 1054a30f8f8cSSatish Balay PetscFunctionReturn(0); 1055a30f8f8cSSatish Balay } 1056a30f8f8cSSatish Balay 10574a2ae208SSatish Balay #undef __FUNCT__ 10584a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1059dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1060a30f8f8cSSatish Balay { 1061dfbe8321SBarry Smith PetscErrorCode ierr; 10625a7c0312SHong Zhang 1063a30f8f8cSSatish Balay PetscFunctionBegin; 10645a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10655a7c0312SHong Zhang PetscFunctionReturn(0); 1066a30f8f8cSSatish Balay } 1067a30f8f8cSSatish Balay 10684a2ae208SSatish Balay #undef __FUNCT__ 10694a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1070dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1071a30f8f8cSSatish Balay { 1072dfbe8321SBarry Smith PetscErrorCode ierr; 10735a7c0312SHong Zhang 1074a30f8f8cSSatish Balay PetscFunctionBegin; 10755a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 10765a7c0312SHong Zhang PetscFunctionReturn(0); 1077a30f8f8cSSatish Balay } 1078a30f8f8cSSatish Balay 1079a30f8f8cSSatish Balay /* 1080a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1081a30f8f8cSSatish Balay diagonal block 1082a30f8f8cSSatish Balay */ 10834a2ae208SSatish Balay #undef __FUNCT__ 10844a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1085dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1086a30f8f8cSSatish Balay { 1087a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1088dfbe8321SBarry Smith PetscErrorCode ierr; 1089a30f8f8cSSatish Balay 1090a30f8f8cSSatish Balay PetscFunctionBegin; 109129bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1092a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1093a30f8f8cSSatish Balay PetscFunctionReturn(0); 1094a30f8f8cSSatish Balay } 1095a30f8f8cSSatish Balay 10964a2ae208SSatish Balay #undef __FUNCT__ 10974a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1098dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1099a30f8f8cSSatish Balay { 1100a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1101dfbe8321SBarry Smith PetscErrorCode ierr; 1102a30f8f8cSSatish Balay 1103a30f8f8cSSatish Balay PetscFunctionBegin; 1104a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1105a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1106a30f8f8cSSatish Balay PetscFunctionReturn(0); 1107a30f8f8cSSatish Balay } 1108a30f8f8cSSatish Balay 11094a2ae208SSatish Balay #undef __FUNCT__ 11104a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11111302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1112a30f8f8cSSatish Balay { 1113a30f8f8cSSatish Balay PetscFunctionBegin; 111480e57f9fSHong Zhang SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format"); 1115a30f8f8cSSatish Balay PetscFunctionReturn(0); 1116a30f8f8cSSatish Balay } 1117a30f8f8cSSatish Balay 11184a2ae208SSatish Balay #undef __FUNCT__ 11194a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11201302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1121a30f8f8cSSatish Balay { 1122a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1123a30f8f8cSSatish Balay 1124a30f8f8cSSatish Balay PetscFunctionBegin; 1125abc0a331SBarry Smith if (!baij->getrowactive) { 1126abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1127a30f8f8cSSatish Balay } 1128a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1129a30f8f8cSSatish Balay PetscFunctionReturn(0); 1130a30f8f8cSSatish Balay } 1131a30f8f8cSSatish Balay 11324a2ae208SSatish Balay #undef __FUNCT__ 11334a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1134dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1135a30f8f8cSSatish Balay { 1136a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1137dfbe8321SBarry Smith PetscErrorCode ierr; 1138a30f8f8cSSatish Balay 1139a30f8f8cSSatish Balay PetscFunctionBegin; 1140a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1141a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1142a30f8f8cSSatish Balay PetscFunctionReturn(0); 1143a30f8f8cSSatish Balay } 1144a30f8f8cSSatish Balay 11454a2ae208SSatish Balay #undef __FUNCT__ 11464a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1147dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1148a30f8f8cSSatish Balay { 1149a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1150a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1151dfbe8321SBarry Smith PetscErrorCode ierr; 1152a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1153a30f8f8cSSatish Balay 1154a30f8f8cSSatish Balay PetscFunctionBegin; 1155521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1156a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1157a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1158a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1159a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1160a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1161a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1162a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1163a30f8f8cSSatish Balay info->nz_used = isend[0]; 1164a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1165a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1166a30f8f8cSSatish Balay info->memory = isend[3]; 1167a30f8f8cSSatish Balay info->mallocs = isend[4]; 1168a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1169d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1170a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1171a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1172a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1173a30f8f8cSSatish Balay info->memory = irecv[3]; 1174a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1175a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1176d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1177a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1178a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1179a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1180a30f8f8cSSatish Balay info->memory = irecv[3]; 1181a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1182a30f8f8cSSatish Balay } else { 118377431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1184a30f8f8cSSatish Balay } 1185f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1186f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1187f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1188f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1189a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1190a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1191a30f8f8cSSatish Balay info->factor_mallocs = 0; 1192a30f8f8cSSatish Balay PetscFunctionReturn(0); 1193a30f8f8cSSatish Balay } 1194a30f8f8cSSatish Balay 11954a2ae208SSatish Balay #undef __FUNCT__ 11964a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1197dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1198a30f8f8cSSatish Balay { 1199a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1200dfbe8321SBarry Smith PetscErrorCode ierr; 1201a30f8f8cSSatish Balay 1202a30f8f8cSSatish Balay PetscFunctionBegin; 1203e98b92d7SKris Buschelman switch (op) { 1204e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1205e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1206e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1207e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1208e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1209e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1210e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1211a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1212a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1213e98b92d7SKris Buschelman break; 1214e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1215a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1216a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1217a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1218e98b92d7SKris Buschelman break; 1219e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1220e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1221e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 122263ba0a88SBarry Smith ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr); 1223e98b92d7SKris Buschelman break; 1224e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1225a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1226a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1227a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1228e98b92d7SKris Buschelman break; 1229e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1230a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1231e98b92d7SKris Buschelman break; 1232e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 123329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1234e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1235a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1236e98b92d7SKris Buschelman break; 12379a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12389a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12399a4540c5SBarry Smith case MAT_HERMITIAN: 12409a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 124177e54ba9SKris Buschelman case MAT_SYMMETRIC: 124277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12439a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12449a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12459a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 124677e54ba9SKris Buschelman break; 1247e98b92d7SKris Buschelman default: 124829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1249a30f8f8cSSatish Balay } 1250a30f8f8cSSatish Balay PetscFunctionReturn(0); 1251a30f8f8cSSatish Balay } 1252a30f8f8cSSatish Balay 12534a2ae208SSatish Balay #undef __FUNCT__ 12548115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1255dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1256a30f8f8cSSatish Balay { 1257dfbe8321SBarry Smith PetscErrorCode ierr; 1258a30f8f8cSSatish Balay PetscFunctionBegin; 1259999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 12608115998fSBarry Smith PetscFunctionReturn(0); 1261a30f8f8cSSatish Balay } 1262a30f8f8cSSatish Balay 12634a2ae208SSatish Balay #undef __FUNCT__ 12644a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1265dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1266a30f8f8cSSatish Balay { 1267a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1268a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1269dfbe8321SBarry Smith PetscErrorCode ierr; 12705e90f9d9SHong Zhang PetscInt nv,m,n; 1271b3bf805bSHong Zhang PetscTruth flg; 1272a30f8f8cSSatish Balay 1273a30f8f8cSSatish Balay PetscFunctionBegin; 1274a30f8f8cSSatish Balay if (ll != rr){ 1275b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1276b3bf805bSHong Zhang if (!flg) 127729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1278a30f8f8cSSatish Balay } 1279b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1280b3bf805bSHong Zhang 12815e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12825e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1283b3bf805bSHong Zhang 12845e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12855e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12865e90f9d9SHong Zhang 1287a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 12885e90f9d9SHong Zhang 12895e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1290a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12915e90f9d9SHong Zhang 12925e90f9d9SHong Zhang /* scale the diagonal part */ 1293a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1294a30f8f8cSSatish Balay 12955e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1296a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1297a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1298a30f8f8cSSatish Balay PetscFunctionReturn(0); 1299a30f8f8cSSatish Balay } 1300a30f8f8cSSatish Balay 13014a2ae208SSatish Balay #undef __FUNCT__ 13024a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1303dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1304a30f8f8cSSatish Balay { 1305a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1306a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 13071302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1308dfbe8321SBarry Smith PetscErrorCode ierr; 1309a30f8f8cSSatish Balay 1310a30f8f8cSSatish Balay PetscFunctionBegin; 1311a30f8f8cSSatish Balay if (!a->rank) { 1312a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1313a30f8f8cSSatish Balay } 13141302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1315a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1316a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1317a30f8f8cSSatish Balay PetscFunctionReturn(0); 1318a30f8f8cSSatish Balay } 1319a30f8f8cSSatish Balay 13204a2ae208SSatish Balay #undef __FUNCT__ 13214a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1322dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1323a30f8f8cSSatish Balay { 1324f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1325dfbe8321SBarry Smith PetscErrorCode ierr; 1326a30f8f8cSSatish Balay 1327a30f8f8cSSatish Balay PetscFunctionBegin; 1328a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1329a30f8f8cSSatish Balay PetscFunctionReturn(0); 1330a30f8f8cSSatish Balay } 1331a30f8f8cSSatish Balay 13326849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1333a30f8f8cSSatish Balay 13344a2ae208SSatish Balay #undef __FUNCT__ 13354a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1336dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1337a30f8f8cSSatish Balay { 1338a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1339a30f8f8cSSatish Balay Mat a,b,c,d; 1340a30f8f8cSSatish Balay PetscTruth flg; 1341dfbe8321SBarry Smith PetscErrorCode ierr; 1342a30f8f8cSSatish Balay 1343a30f8f8cSSatish Balay PetscFunctionBegin; 1344a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1345a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1346a30f8f8cSSatish Balay 1347a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1348abc0a331SBarry Smith if (flg) { 1349a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1350a30f8f8cSSatish Balay } 1351a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1352a30f8f8cSSatish Balay PetscFunctionReturn(0); 1353a30f8f8cSSatish Balay } 1354a30f8f8cSSatish Balay 13554a2ae208SSatish Balay #undef __FUNCT__ 13564a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1357dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1358273d9f13SBarry Smith { 1359dfbe8321SBarry Smith PetscErrorCode ierr; 1360273d9f13SBarry Smith 1361273d9f13SBarry Smith PetscFunctionBegin; 1362273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1363273d9f13SBarry Smith PetscFunctionReturn(0); 1364273d9f13SBarry Smith } 1365a5e6ed63SBarry Smith 1366a5e6ed63SBarry Smith #undef __FUNCT__ 1367a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 13681302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1369a5e6ed63SBarry Smith { 13706849ba73SBarry Smith PetscErrorCode ierr; 13711302d50aSBarry Smith PetscInt i; 1372a5e6ed63SBarry Smith PetscTruth flg; 1373a5e6ed63SBarry Smith 13746849ba73SBarry Smith PetscFunctionBegin; 1375a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1376a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1377a5e6ed63SBarry Smith if (!flg) { 13781302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1379a5e6ed63SBarry Smith } 1380a5e6ed63SBarry Smith } 1381a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1382a5e6ed63SBarry Smith PetscFunctionReturn(0); 1383a5e6ed63SBarry Smith } 1384a5e6ed63SBarry Smith 1385a5e6ed63SBarry Smith 1386a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1387a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1388a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1389a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1390a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1391a9d4b620SHong Zhang MatMult_MPISBAIJ, 139297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1393a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1394a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1395a30f8f8cSSatish Balay 0, 1396a30f8f8cSSatish Balay 0, 1397a30f8f8cSSatish Balay 0, 139897304618SKris Buschelman /*10*/ 0, 1399a30f8f8cSSatish Balay 0, 1400a30f8f8cSSatish Balay 0, 14012798e883SHong Zhang MatRelax_MPISBAIJ, 1402a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 140397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1404a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1405a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1406a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1407a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 140897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1409a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1410a30f8f8cSSatish Balay 0, 1411a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1412a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1413dcf5cc72SBarry Smith /*25*/ 0, 1414a30f8f8cSSatish Balay 0, 1415a30f8f8cSSatish Balay 0, 1416a30f8f8cSSatish Balay 0, 1417a30f8f8cSSatish Balay 0, 141897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1419b5df2d14SHong Zhang 0, 1420a30f8f8cSSatish Balay 0, 1421a30f8f8cSSatish Balay 0, 1422a30f8f8cSSatish Balay 0, 142397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1424a30f8f8cSSatish Balay 0, 1425a30f8f8cSSatish Balay 0, 1426a30f8f8cSSatish Balay 0, 1427a30f8f8cSSatish Balay 0, 142897304618SKris Buschelman /*40*/ 0, 1429a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1430d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1431a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1432a30f8f8cSSatish Balay 0, 143397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1434a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1435a30f8f8cSSatish Balay 0, 1436a30f8f8cSSatish Balay 0, 1437a30f8f8cSSatish Balay 0, 1438521d7252SBarry Smith /*50*/ 0, 1439a30f8f8cSSatish Balay 0, 1440a30f8f8cSSatish Balay 0, 1441a30f8f8cSSatish Balay 0, 1442a30f8f8cSSatish Balay 0, 144397304618SKris Buschelman /*55*/ 0, 1444a30f8f8cSSatish Balay 0, 1445a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1446a30f8f8cSSatish Balay 0, 1447a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 144897304618SKris Buschelman /*60*/ 0, 1449a30f8f8cSSatish Balay 0, 1450a30f8f8cSSatish Balay 0, 14518a124369SBarry Smith MatGetPetscMaps_Petsc, 145224d5174aSHong Zhang 0, 145397304618SKris Buschelman /*65*/ 0, 145424d5174aSHong Zhang 0, 145524d5174aSHong Zhang 0, 145624d5174aSHong Zhang 0, 145724d5174aSHong Zhang 0, 145897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 145924d5174aSHong Zhang 0, 146097304618SKris Buschelman 0, 146197304618SKris Buschelman 0, 146297304618SKris Buschelman 0, 146397304618SKris Buschelman /*75*/ 0, 146497304618SKris Buschelman 0, 146597304618SKris Buschelman 0, 146697304618SKris Buschelman 0, 146797304618SKris Buschelman 0, 146897304618SKris Buschelman /*80*/ 0, 146997304618SKris Buschelman 0, 147097304618SKris Buschelman 0, 147197304618SKris Buschelman 0, 1472865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1473865e5f61SKris Buschelman /*85*/ 0, 1474865e5f61SKris Buschelman 0, 1475865e5f61SKris Buschelman 0, 1476865e5f61SKris Buschelman 0, 1477865e5f61SKris Buschelman 0, 1478865e5f61SKris Buschelman /*90*/ 0, 1479865e5f61SKris Buschelman 0, 1480865e5f61SKris Buschelman 0, 1481865e5f61SKris Buschelman 0, 1482865e5f61SKris Buschelman 0, 1483865e5f61SKris Buschelman /*95*/ 0, 1484865e5f61SKris Buschelman 0, 1485865e5f61SKris Buschelman 0, 1486865e5f61SKris Buschelman 0}; 1487a30f8f8cSSatish Balay 1488a30f8f8cSSatish Balay 1489a30f8f8cSSatish Balay EXTERN_C_BEGIN 14904a2ae208SSatish Balay #undef __FUNCT__ 14914a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1492dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1493a30f8f8cSSatish Balay { 1494a30f8f8cSSatish Balay PetscFunctionBegin; 1495a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1496a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1497a30f8f8cSSatish Balay PetscFunctionReturn(0); 1498a30f8f8cSSatish Balay } 1499a30f8f8cSSatish Balay EXTERN_C_END 1500a30f8f8cSSatish Balay 1501273d9f13SBarry Smith EXTERN_C_BEGIN 15024a2ae208SSatish Balay #undef __FUNCT__ 1503a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 15041302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1505a23d5eceSKris Buschelman { 1506a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1507dfbe8321SBarry Smith PetscErrorCode ierr; 15081302d50aSBarry Smith PetscInt i,mbs,Mbs; 1509a23d5eceSKris Buschelman 1510a23d5eceSKris Buschelman PetscFunctionBegin; 1511a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1512a23d5eceSKris Buschelman 1513a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1514a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1515a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 151677431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 151777431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1518a23d5eceSKris Buschelman if (d_nnz) { 1519a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 152077431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1521a23d5eceSKris Buschelman } 1522a23d5eceSKris Buschelman } 1523a23d5eceSKris Buschelman if (o_nnz) { 1524a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 152577431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1526a23d5eceSKris Buschelman } 1527a23d5eceSKris Buschelman } 1528a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1529a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1530a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1531a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1532a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1533a23d5eceSKris Buschelman 1534a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1535a23d5eceSKris Buschelman mbs = B->m/bs; 1536a23d5eceSKris Buschelman Mbs = B->M/bs; 1537a23d5eceSKris Buschelman if (mbs*bs != B->m) { 153877431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1539a23d5eceSKris Buschelman } 1540a23d5eceSKris Buschelman 1541521d7252SBarry Smith B->bs = bs; 1542a23d5eceSKris Buschelman b->bs2 = bs*bs; 1543a23d5eceSKris Buschelman b->mbs = mbs; 1544a23d5eceSKris Buschelman b->nbs = mbs; 1545a23d5eceSKris Buschelman b->Mbs = Mbs; 1546a23d5eceSKris Buschelman b->Nbs = Mbs; 1547a23d5eceSKris Buschelman 1548a7cc72afSBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 1549a23d5eceSKris Buschelman b->rowners[0] = 0; 1550a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1551a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1552a23d5eceSKris Buschelman } 1553a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1554a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1555a23d5eceSKris Buschelman b->cstart = b->rstart; 1556a23d5eceSKris Buschelman b->cend = b->rend; 1557a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1558a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1559a23d5eceSKris Buschelman } 1560a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1561a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1562a23d5eceSKris Buschelman 1563a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1564a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1565a23d5eceSKris Buschelman 15669c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 15679c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1568c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 156952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 15709c097c71SKris Buschelman 15719c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 15724aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1573589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 157452e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1575a23d5eceSKris Buschelman 1576a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1577a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1578a23d5eceSKris Buschelman 1579a23d5eceSKris Buschelman PetscFunctionReturn(0); 1580a23d5eceSKris Buschelman } 1581a23d5eceSKris Buschelman EXTERN_C_END 1582a23d5eceSKris Buschelman 15830bad9183SKris Buschelman /*MC 1584fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 15850bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 15860bad9183SKris Buschelman 15870bad9183SKris Buschelman Options Database Keys: 15880bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 15890bad9183SKris Buschelman 15900bad9183SKris Buschelman Level: beginner 15910bad9183SKris Buschelman 15920bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 15930bad9183SKris Buschelman M*/ 15940bad9183SKris Buschelman 1595a23d5eceSKris Buschelman EXTERN_C_BEGIN 1596a23d5eceSKris Buschelman #undef __FUNCT__ 15974a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1598dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1599b5df2d14SHong Zhang { 1600b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1601dfbe8321SBarry Smith PetscErrorCode ierr; 1602b5df2d14SHong Zhang PetscTruth flg; 1603b5df2d14SHong Zhang 1604b5df2d14SHong Zhang PetscFunctionBegin; 1605b5df2d14SHong Zhang 1606b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1607b0a32e0cSBarry Smith B->data = (void*)b; 1608b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1609b5df2d14SHong Zhang 1610b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1611b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1612b5df2d14SHong Zhang B->mapping = 0; 1613b5df2d14SHong Zhang B->factor = 0; 1614b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1615b5df2d14SHong Zhang 1616b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1617b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1618b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1619b5df2d14SHong Zhang 1620b5df2d14SHong Zhang /* build local table of row and column ownerships */ 16211302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1622273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1623273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 162452e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1625b5df2d14SHong Zhang 1626b5df2d14SHong Zhang /* build cache for off array entries formed */ 1627b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1628b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1629b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1630b5df2d14SHong Zhang b->garray = PETSC_NULL; 1631b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1632b5df2d14SHong Zhang 1633f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1634b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 163564a35ccbSBarry Smith b->setvalueslen = 0; 1636b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1637b5df2d14SHong Zhang #endif 1638b5df2d14SHong Zhang 1639b5df2d14SHong Zhang /* stuff used in block assembly */ 1640b5df2d14SHong Zhang b->barray = 0; 1641b5df2d14SHong Zhang 1642b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1643b5df2d14SHong Zhang b->lvec = 0; 1644b5df2d14SHong Zhang b->Mvctx = 0; 164540781036SHong Zhang b->slvec0 = 0; 164640781036SHong Zhang b->slvec0b = 0; 164740781036SHong Zhang b->slvec1 = 0; 164840781036SHong Zhang b->slvec1a = 0; 164940781036SHong Zhang b->slvec1b = 0; 165040781036SHong Zhang b->sMvctx = 0; 1651b5df2d14SHong Zhang 1652b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1653b5df2d14SHong Zhang b->rowindices = 0; 1654b5df2d14SHong Zhang b->rowvalues = 0; 1655b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1656b5df2d14SHong Zhang 1657b5df2d14SHong Zhang /* hash table stuff */ 1658b5df2d14SHong Zhang b->ht = 0; 1659b5df2d14SHong Zhang b->hd = 0; 1660b5df2d14SHong Zhang b->ht_size = 0; 1661b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1662b5df2d14SHong Zhang b->ht_fact = 0; 1663b5df2d14SHong Zhang b->ht_total_ct = 0; 1664b5df2d14SHong Zhang b->ht_insert_ct = 0; 1665b5df2d14SHong Zhang 1666e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1667b5df2d14SHong Zhang if (flg) { 1668f6275e2eSBarry Smith PetscReal fact = 1.39; 1669b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1670e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1671b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1672b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 167363ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr); 1674b5df2d14SHong Zhang } 1675b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1676b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1677b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1678b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1679b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1680b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1681b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1682b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1683b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1684a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1685a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1686a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 168723ce1328SBarry Smith B->symmetric = PETSC_TRUE; 168823ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 168923ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 169023ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1691b5df2d14SHong Zhang PetscFunctionReturn(0); 1692b5df2d14SHong Zhang } 1693273d9f13SBarry Smith EXTERN_C_END 1694b5df2d14SHong Zhang 1695209238afSKris Buschelman /*MC 1696002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1697209238afSKris Buschelman 1698209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1699209238afSKris Buschelman and MATMPISBAIJ otherwise. 1700209238afSKris Buschelman 1701209238afSKris Buschelman Options Database Keys: 1702209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1703209238afSKris Buschelman 1704209238afSKris Buschelman Level: beginner 1705209238afSKris Buschelman 1706209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1707209238afSKris Buschelman M*/ 1708209238afSKris Buschelman 1709209238afSKris Buschelman EXTERN_C_BEGIN 1710209238afSKris Buschelman #undef __FUNCT__ 1711209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1712dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A) 1713dfbe8321SBarry Smith { 17146849ba73SBarry Smith PetscErrorCode ierr; 17151302d50aSBarry Smith PetscMPIInt size; 1716209238afSKris Buschelman 1717209238afSKris Buschelman PetscFunctionBegin; 1718209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1719209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1720209238afSKris Buschelman if (size == 1) { 1721209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1722209238afSKris Buschelman } else { 1723209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1724209238afSKris Buschelman } 1725209238afSKris Buschelman PetscFunctionReturn(0); 1726209238afSKris Buschelman } 1727209238afSKris Buschelman EXTERN_C_END 1728209238afSKris Buschelman 17294a2ae208SSatish Balay #undef __FUNCT__ 17304a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1731b5df2d14SHong Zhang /*@C 1732b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1733b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1734b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1735b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1736b5df2d14SHong Zhang 1737b5df2d14SHong Zhang Collective on Mat 1738b5df2d14SHong Zhang 1739b5df2d14SHong Zhang Input Parameters: 1740b5df2d14SHong Zhang + A - the matrix 1741b5df2d14SHong Zhang . bs - size of blockk 1742b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1743b5df2d14SHong Zhang submatrix (same for all local rows) 1744b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 17456d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 17466d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 17476d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1748b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1749b5df2d14SHong Zhang submatrix (same for all local rows). 1750b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1751b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1752b5df2d14SHong Zhang each block row) or PETSC_NULL. 1753b5df2d14SHong Zhang 1754b5df2d14SHong Zhang 1755b5df2d14SHong Zhang Options Database Keys: 1756b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1757b5df2d14SHong Zhang block calculations (much slower) 1758b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1759b5df2d14SHong Zhang 1760b5df2d14SHong Zhang Notes: 1761b5df2d14SHong Zhang 1762b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1763b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1764b5df2d14SHong Zhang 176549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 176649a6f317SBarry Smith 1767b5df2d14SHong Zhang Storage Information: 1768b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1769b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1770b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1771b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1772b5df2d14SHong Zhang 1773b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1774b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1775b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1776b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1777b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1778b5df2d14SHong Zhang 1779b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1780b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1781b5df2d14SHong Zhang 1782b5df2d14SHong Zhang .vb 1783b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1784b5df2d14SHong Zhang ------------------- 1785b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1786b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1787b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1788b5df2d14SHong Zhang ------------------- 1789b5df2d14SHong Zhang .ve 1790b5df2d14SHong Zhang 1791b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1792b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 17936d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 17946d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1795b5df2d14SHong Zhang 17966d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 17976d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1798b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1799b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1800b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1801b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1802b5df2d14SHong Zhang matrices. 1803b5df2d14SHong Zhang 1804b5df2d14SHong Zhang Level: intermediate 1805b5df2d14SHong Zhang 1806b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1807b5df2d14SHong Zhang 1808b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1809b5df2d14SHong Zhang @*/ 18101302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1811b5df2d14SHong Zhang { 18121302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1813b5df2d14SHong Zhang 1814b5df2d14SHong Zhang PetscFunctionBegin; 1815a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1816a23d5eceSKris Buschelman if (f) { 1817a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1818b5df2d14SHong Zhang } 1819b5df2d14SHong Zhang PetscFunctionReturn(0); 1820b5df2d14SHong Zhang } 1821b5df2d14SHong Zhang 18224a2ae208SSatish Balay #undef __FUNCT__ 18234a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1824a30f8f8cSSatish Balay /*@C 1825a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1826a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1827a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1828a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1829a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1830a30f8f8cSSatish Balay 1831a30f8f8cSSatish Balay Collective on MPI_Comm 1832a30f8f8cSSatish Balay 1833a30f8f8cSSatish Balay Input Parameters: 1834a30f8f8cSSatish Balay + comm - MPI communicator 1835a30f8f8cSSatish Balay . bs - size of blockk 1836a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1837a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1838a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1839a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1840a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1841a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1842a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1843a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1844a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1845a30f8f8cSSatish Balay submatrix (same for all local rows) 1846a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 18476d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 18486d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 18496d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1850a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1851a30f8f8cSSatish Balay submatrix (same for all local rows). 1852a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1853a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1854a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1855a30f8f8cSSatish Balay 1856a30f8f8cSSatish Balay Output Parameter: 1857a30f8f8cSSatish Balay . A - the matrix 1858a30f8f8cSSatish Balay 1859a30f8f8cSSatish Balay Options Database Keys: 1860a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1861a30f8f8cSSatish Balay block calculations (much slower) 1862a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1863a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1864a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1865a30f8f8cSSatish Balay 1866a30f8f8cSSatish Balay Notes: 1867d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1868d1be2dadSMatthew Knepley 1869a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1870a30f8f8cSSatish Balay (possibly both). 1871a30f8f8cSSatish Balay 1872a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1873a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1874a30f8f8cSSatish Balay 187549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187649a6f317SBarry Smith 1877a30f8f8cSSatish Balay Storage Information: 1878a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1879a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1880a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1881a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1882a30f8f8cSSatish Balay 1883a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1884a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1885a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1886a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1887a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1888a30f8f8cSSatish Balay 1889a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1890a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1891a30f8f8cSSatish Balay 1892a30f8f8cSSatish Balay .vb 1893a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1894a30f8f8cSSatish Balay ------------------- 1895a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1896a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1897a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1898a30f8f8cSSatish Balay ------------------- 1899a30f8f8cSSatish Balay .ve 1900a30f8f8cSSatish Balay 1901a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1902a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19036d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19046d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1905a30f8f8cSSatish Balay 19066d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19076d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1908a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1909a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1910a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1911a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1912a30f8f8cSSatish Balay matrices. 1913a30f8f8cSSatish Balay 1914a30f8f8cSSatish Balay Level: intermediate 1915a30f8f8cSSatish Balay 1916a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1917a30f8f8cSSatish Balay 1918a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1919a30f8f8cSSatish Balay @*/ 1920a30f8f8cSSatish Balay 19211302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1922a30f8f8cSSatish Balay { 19236849ba73SBarry Smith PetscErrorCode ierr; 19241302d50aSBarry Smith PetscMPIInt size; 1925a30f8f8cSSatish Balay 1926a30f8f8cSSatish Balay PetscFunctionBegin; 1927b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1928273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1929273d9f13SBarry Smith if (size > 1) { 1930b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1931b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1932273d9f13SBarry Smith } else { 1933273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1934273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1935273d9f13SBarry Smith } 1936a30f8f8cSSatish Balay PetscFunctionReturn(0); 1937a30f8f8cSSatish Balay } 1938a30f8f8cSSatish Balay 1939a30f8f8cSSatish Balay 19404a2ae208SSatish Balay #undef __FUNCT__ 19414a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 19426849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1943a30f8f8cSSatish Balay { 1944a30f8f8cSSatish Balay Mat mat; 1945a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1946dfbe8321SBarry Smith PetscErrorCode ierr; 1947521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 1948387bc808SHong Zhang PetscScalar *array; 1949a30f8f8cSSatish Balay 1950a30f8f8cSSatish Balay PetscFunctionBegin; 1951a30f8f8cSSatish Balay *newmat = 0; 1952b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1953be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 19541d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1955e1b6402fSHong Zhang 195682327fa8SHong Zhang mat->factor = matin->factor; 1957273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 195882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 19597fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 19607fff6886SHong Zhang 1961b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1962521d7252SBarry Smith mat->bs = matin->bs; 1963a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1964a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1965a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1966a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1967a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1968a30f8f8cSSatish Balay 1969a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1970a30f8f8cSSatish Balay a->rend = oldmat->rend; 1971a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1972a30f8f8cSSatish Balay a->cend = oldmat->cend; 1973a30f8f8cSSatish Balay a->size = oldmat->size; 1974a30f8f8cSSatish Balay a->rank = oldmat->rank; 1975a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1976a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1977a30f8f8cSSatish Balay a->rowindices = 0; 1978a30f8f8cSSatish Balay a->rowvalues = 0; 1979a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1980a30f8f8cSSatish Balay a->barray = 0; 1981a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1982a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1983a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1984a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1985a30f8f8cSSatish Balay 1986a30f8f8cSSatish Balay /* hash table stuff */ 1987a30f8f8cSSatish Balay a->ht = 0; 1988a30f8f8cSSatish Balay a->hd = 0; 1989a30f8f8cSSatish Balay a->ht_size = 0; 1990a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1991a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1992a30f8f8cSSatish Balay a->ht_total_ct = 0; 1993a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1994a30f8f8cSSatish Balay 19951302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 1996a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1997521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 1998a30f8f8cSSatish Balay if (oldmat->colmap) { 1999a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2000a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2001a30f8f8cSSatish Balay #else 20021302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 200352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20041302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2005a30f8f8cSSatish Balay #endif 2006a30f8f8cSSatish Balay } else a->colmap = 0; 2007387bc808SHong Zhang 2008a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20091302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 201052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 20111302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2012a30f8f8cSSatish Balay } else a->garray = 0; 2013a30f8f8cSSatish Balay 2014a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 201552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2016a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 201752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 201882327fa8SHong Zhang 201982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 202052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 202182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 202252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2023387bc808SHong Zhang 2024387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 20251ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2026387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2027387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 20281ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 20291ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2030387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 20311ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 203252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 203352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 203452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 203552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 203652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2037387bc808SHong Zhang 2038387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2039387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2040387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 204152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 204282327fa8SHong Zhang 2043a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 204452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2045a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 204652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2047b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2048a30f8f8cSSatish Balay *newmat = mat; 2049a30f8f8cSSatish Balay PetscFunctionReturn(0); 2050a30f8f8cSSatish Balay } 2051a30f8f8cSSatish Balay 2052a30f8f8cSSatish Balay #include "petscsys.h" 2053a30f8f8cSSatish Balay 20544a2ae208SSatish Balay #undef __FUNCT__ 20554a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2056dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2057a30f8f8cSSatish Balay { 2058a30f8f8cSSatish Balay Mat A; 20596849ba73SBarry Smith PetscErrorCode ierr; 206013f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 206187828ca2SBarry Smith PetscScalar *vals,*buf; 2062a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2063a30f8f8cSSatish Balay MPI_Status status; 206413f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners; 206513f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 206613f74950SBarry Smith PetscInt *locrowlens,*procsnz = 0,jj,*mycols,*ibuf; 20671302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 20681302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 20691302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 207013f74950SBarry Smith int fd; 2071a30f8f8cSSatish Balay 2072a30f8f8cSSatish Balay PetscFunctionBegin; 2073b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2074a30f8f8cSSatish Balay 2075a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2076a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2077a30f8f8cSSatish Balay if (!rank) { 2078b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2079a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2080552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2081a30f8f8cSSatish Balay if (header[3] < 0) { 208229bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2083a30f8f8cSSatish Balay } 2084a30f8f8cSSatish Balay } 2085a30f8f8cSSatish Balay 2086a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2087a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2088a30f8f8cSSatish Balay 208929bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2090a30f8f8cSSatish Balay 2091a30f8f8cSSatish Balay /* 2092a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2093a30f8f8cSSatish Balay divisible by the blocksize 2094a30f8f8cSSatish Balay */ 2095a30f8f8cSSatish Balay Mbs = M/bs; 2096a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2097a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2098a30f8f8cSSatish Balay else Mbs++; 2099a30f8f8cSSatish Balay if (extra_rows &&!rank) { 210063ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr); 2101a30f8f8cSSatish Balay } 2102a30f8f8cSSatish Balay 2103a30f8f8cSSatish Balay /* determine ownership of all rows */ 2104a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2105a30f8f8cSSatish Balay m = mbs*bs; 2106a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2107a30f8f8cSSatish Balay browners = rowners + size + 1; 2108a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2109a30f8f8cSSatish Balay rowners[0] = 0; 2110a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2111a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2112a30f8f8cSSatish Balay rstart = rowners[rank]; 2113a30f8f8cSSatish Balay rend = rowners[rank+1]; 2114a30f8f8cSSatish Balay 2115a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 21161302d50aSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 2117a30f8f8cSSatish Balay if (!rank) { 21181302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2119a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2120a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2121a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2122a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2123a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2124a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2125a30f8f8cSSatish Balay } else { 2126a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2127a30f8f8cSSatish Balay } 2128a30f8f8cSSatish Balay 21290222edb1SHong Zhang if (!rank) { /* procs[0] */ 2130a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 21311302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 21321302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2133a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2134a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2135a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2136a30f8f8cSSatish Balay } 2137a30f8f8cSSatish Balay } 2138a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2139a30f8f8cSSatish Balay 2140a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2141a30f8f8cSSatish Balay maxnz = 0; 2142a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2143a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2144a30f8f8cSSatish Balay } 21451302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay 2147a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2148a30f8f8cSSatish Balay nz = procsnz[0]; 21491302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2150a30f8f8cSSatish Balay mycols = ibuf; 2151a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2152a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2154a30f8f8cSSatish Balay 2155a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2156a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2157a30f8f8cSSatish Balay nz = procsnz[i]; 2158a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2159a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2160a30f8f8cSSatish Balay } 2161a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2162a30f8f8cSSatish Balay if (size != 1) { 2163a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2164a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2165a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2166a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2167a30f8f8cSSatish Balay } 2168a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21690222edb1SHong Zhang } else { /* procs[i], i>0 */ 2170a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2171a30f8f8cSSatish Balay nz = 0; 2172a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2173a30f8f8cSSatish Balay nz += locrowlens[i]; 2174a30f8f8cSSatish Balay } 21751302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2176a30f8f8cSSatish Balay mycols = ibuf; 2177a30f8f8cSSatish Balay /* receive message of column indices*/ 2178a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2179a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 218029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2181a30f8f8cSSatish Balay } 2182a30f8f8cSSatish Balay 2183a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 21841302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 21861302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 21871302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2188a30f8f8cSSatish Balay masked1 = mask + Mbs; 2189a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2190a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2191a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2192a30f8f8cSSatish Balay dcount = 0; 2193a30f8f8cSSatish Balay odcount = 0; 2194a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2195a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2196a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21970222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2198a30f8f8cSSatish Balay if (!mask[tmp]) { 2199a30f8f8cSSatish Balay mask[tmp] = 1; 22000222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22010222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2202a30f8f8cSSatish Balay } 2203a30f8f8cSSatish Balay } 2204a30f8f8cSSatish Balay rowcount++; 2205a30f8f8cSSatish Balay } 2206a30f8f8cSSatish Balay 22070222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22080222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2209a30f8f8cSSatish Balay 2210a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2211a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2212a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2213a30f8f8cSSatish Balay } 2214a30f8f8cSSatish Balay 2215a30f8f8cSSatish Balay /* create our matrix */ 221622191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 221722191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 221822191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2219273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay 2221a30f8f8cSSatish Balay if (!rank) { 222287828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2224a30f8f8cSSatish Balay nz = procsnz[0]; 2225a30f8f8cSSatish Balay vals = buf; 2226a30f8f8cSSatish Balay mycols = ibuf; 2227a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2228a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2229a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2230a30f8f8cSSatish Balay 2231a30f8f8cSSatish Balay /* insert into matrix */ 2232a30f8f8cSSatish Balay jj = rstart*bs; 2233a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22347e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2235a30f8f8cSSatish Balay mycols += locrowlens[i]; 2236a30f8f8cSSatish Balay vals += locrowlens[i]; 2237a30f8f8cSSatish Balay jj++; 2238a30f8f8cSSatish Balay } 22397e06b45fSHong Zhang 2240a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2241a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2242a30f8f8cSSatish Balay nz = procsnz[i]; 2243a30f8f8cSSatish Balay vals = buf; 2244a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2245a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2246a30f8f8cSSatish Balay } 2247a30f8f8cSSatish Balay /* the last proc */ 2248a30f8f8cSSatish Balay if (size != 1){ 2249a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2250a30f8f8cSSatish Balay vals = buf; 2251a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2253a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2254a30f8f8cSSatish Balay } 2255a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22567e06b45fSHong Zhang 2257a30f8f8cSSatish Balay } else { 2258a30f8f8cSSatish Balay /* receive numeric values */ 225987828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2260a30f8f8cSSatish Balay 2261a30f8f8cSSatish Balay /* receive message of values*/ 2262a30f8f8cSSatish Balay vals = buf; 2263a30f8f8cSSatish Balay mycols = ibuf; 2264a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 226629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2267a30f8f8cSSatish Balay 2268a30f8f8cSSatish Balay /* insert into matrix */ 2269a30f8f8cSSatish Balay jj = rstart*bs; 2270a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2271a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay mycols += locrowlens[i]; 2273a30f8f8cSSatish Balay vals += locrowlens[i]; 2274a30f8f8cSSatish Balay jj++; 2275a30f8f8cSSatish Balay } 2276a30f8f8cSSatish Balay } 22777e06b45fSHong Zhang 2278a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2279a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2280a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2281a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2282a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2283a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2284a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2285a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 228622191285SKris Buschelman *newmat = A; 2287a30f8f8cSSatish Balay PetscFunctionReturn(0); 2288a30f8f8cSSatish Balay } 2289a30f8f8cSSatish Balay 22904a2ae208SSatish Balay #undef __FUNCT__ 22914a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2292dcf5cc72SBarry Smith /*XXXXX@ 2293a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2294a30f8f8cSSatish Balay 2295a30f8f8cSSatish Balay Input Parameters: 2296a30f8f8cSSatish Balay . mat - the matrix 2297a30f8f8cSSatish Balay . fact - factor 2298a30f8f8cSSatish Balay 2299a30f8f8cSSatish Balay Collective on Mat 2300a30f8f8cSSatish Balay 2301a30f8f8cSSatish Balay Level: advanced 2302a30f8f8cSSatish Balay 2303a30f8f8cSSatish Balay Notes: 2304a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2305a30f8f8cSSatish Balay 2306a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2307a30f8f8cSSatish Balay 2308a30f8f8cSSatish Balay .seealso: MatSetOption() 2309dcf5cc72SBarry Smith @XXXXX*/ 2310dcf5cc72SBarry Smith 231124d5174aSHong Zhang 23124a2ae208SSatish Balay #undef __FUNCT__ 23134a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2314dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 231524d5174aSHong Zhang { 231624d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2317f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2318ca54ac64SHong Zhang PetscReal atmp; 231987828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2320dfbe8321SBarry Smith PetscErrorCode ierr; 23211302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 23221302d50aSBarry Smith PetscMPIInt rank,size; 23231302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 232487828ca2SBarry Smith PetscScalar *va; 23258a1c53f2SBarry Smith MatScalar *ba; 2326f4c0e9e4SHong Zhang MPI_Status stat; 232724d5174aSHong Zhang 232824d5174aSHong Zhang PetscFunctionBegin; 2329d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 23301ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2331f4c0e9e4SHong Zhang 233256faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 233356faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2334f4c0e9e4SHong Zhang 2335521d7252SBarry Smith bs = A->bs; 2336f4c0e9e4SHong Zhang mbs = a->mbs; 2337f4c0e9e4SHong Zhang Mbs = a->Mbs; 2338f4c0e9e4SHong Zhang ba = b->a; 2339f4c0e9e4SHong Zhang bi = b->i; 2340f4c0e9e4SHong Zhang bj = b->j; 2341f4c0e9e4SHong Zhang 2342f4c0e9e4SHong Zhang /* find ownerships */ 2343f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2344f4c0e9e4SHong Zhang 2345f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 234682502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2347ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2348f4c0e9e4SHong Zhang 2349f4c0e9e4SHong Zhang /* row_max for B */ 2350b8475685SHong Zhang if (rank != size-1){ 2351f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2352f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2353f4c0e9e4SHong Zhang brow = bs*i; 2354f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2355f4c0e9e4SHong Zhang bcol = bs*(*bj); 2356f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2357ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 235804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2359f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2360f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2361ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2362ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2363f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2364f4c0e9e4SHong Zhang } 2365f4c0e9e4SHong Zhang } 2366f4c0e9e4SHong Zhang bj++; 2367f4c0e9e4SHong Zhang } 2368f4c0e9e4SHong Zhang } 2369f4c0e9e4SHong Zhang 2370f4c0e9e4SHong Zhang /* send values to its owners */ 2371f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2372f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2373ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 237456faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2375ca54ac64SHong Zhang } 2376f4c0e9e4SHong Zhang } 2377f4c0e9e4SHong Zhang 2378f4c0e9e4SHong Zhang /* receive values */ 2379ca54ac64SHong Zhang if (rank){ 2380f4c0e9e4SHong Zhang rvalues = work; 2381ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2382f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 238356faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2384f4c0e9e4SHong Zhang /* process values */ 2385f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2386ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2387f4c0e9e4SHong Zhang } 2388f4c0e9e4SHong Zhang } 2389ca54ac64SHong Zhang } 2390f4c0e9e4SHong Zhang 23911ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2392ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 239324d5174aSHong Zhang PetscFunctionReturn(0); 239424d5174aSHong Zhang } 23952798e883SHong Zhang 23962798e883SHong Zhang #undef __FUNCT__ 23972798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 23981302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 23992798e883SHong Zhang { 24002798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2401dfbe8321SBarry Smith PetscErrorCode ierr; 2402521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2403ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2404ffe4fb16SHong Zhang Vec bb1; 2405ffe4fb16SHong Zhang 2406ffe4fb16SHong Zhang PetscFunctionBegin; 240777431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2408ffe4fb16SHong Zhang if (bs > 1) 2409ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2410ffe4fb16SHong Zhang 2411ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2412ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2413ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2414ffe4fb16SHong Zhang its--; 2415ffe4fb16SHong Zhang } 2416ffe4fb16SHong Zhang 2417ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2418ffe4fb16SHong Zhang while (its--){ 2419ffe4fb16SHong Zhang 2420ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2421ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2422ffe4fb16SHong Zhang 2423ffe4fb16SHong Zhang /* copy xx into slvec0a */ 24241ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 24251ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2426ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24271ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2428ffe4fb16SHong Zhang 2429ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2430ffe4fb16SHong Zhang 2431ffe4fb16SHong Zhang /* copy bb into slvec1a */ 24321ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 24331ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2434ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24351ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2436ffe4fb16SHong Zhang 2437ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2438ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2439ffe4fb16SHong Zhang 2440ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 24411ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 24421ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2443ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2444ffe4fb16SHong Zhang 2445ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2446ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2447ffe4fb16SHong Zhang 2448ffe4fb16SHong Zhang /* local diagonal sweep */ 2449ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2450ffe4fb16SHong Zhang } 2451ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2452ffe4fb16SHong Zhang } else { 2453ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2454ffe4fb16SHong Zhang } 2455ffe4fb16SHong Zhang PetscFunctionReturn(0); 2456ffe4fb16SHong Zhang } 2457ffe4fb16SHong Zhang 2458ffe4fb16SHong Zhang #undef __FUNCT__ 2459ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 24601302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2461ffe4fb16SHong Zhang { 2462ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2463dfbe8321SBarry Smith PetscErrorCode ierr; 2464d05c616dSSatish Balay PetscScalar mone=-1.0; 24652798e883SHong Zhang Vec lvec1,bb1; 24662798e883SHong Zhang 24672798e883SHong Zhang PetscFunctionBegin; 246877431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2469521d7252SBarry Smith if (matin->bs > 1) 24702798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 24712798e883SHong Zhang 2472c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 24732798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2474bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 24752798e883SHong Zhang its--; 24762798e883SHong Zhang } 24772798e883SHong Zhang 24782798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 24792798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 24802798e883SHong Zhang while (its--){ 24812798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24822798e883SHong Zhang 24832798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 24842798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 24852798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 24862798e883SHong Zhang 24872798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24882798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 24892798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24902798e883SHong Zhang 24912798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 24922798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 24932798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 24942798e883SHong Zhang 24952798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24962798e883SHong Zhang 2497c14dc6b6SHong Zhang /* diagonal sweep */ 2498bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 24992798e883SHong Zhang } 25002798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25012798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2502c14dc6b6SHong Zhang } else { 2503c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2504c14dc6b6SHong Zhang } 25052798e883SHong Zhang PetscFunctionReturn(0); 25062798e883SHong Zhang } 25072798e883SHong Zhang 2508