1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 10b147fbf3SStefano Zampini 11b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 12b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 13b147fbf3SStefano Zampini { 14b147fbf3SStefano Zampini Mat preallocator; 15b147fbf3SStefano Zampini PetscInt r,rstart,rend; 16b147fbf3SStefano Zampini PetscInt bs,i,m,n,M,N; 17b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 18b147fbf3SStefano Zampini PetscErrorCode ierr; 19b147fbf3SStefano Zampini 20b147fbf3SStefano Zampini PetscFunctionBegin; 21b147fbf3SStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B,nm,2); 23b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 24b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i],MAT_CLASSID,3); 25b147fbf3SStefano Zampini ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr); 26b147fbf3SStefano Zampini if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts"); 27b147fbf3SStefano Zampini } 28b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B,fill,5); 29b147fbf3SStefano Zampini ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr); 30b147fbf3SStefano Zampini ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr); 31b147fbf3SStefano Zampini ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr); 32b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr); 33b147fbf3SStefano Zampini ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr); 34b147fbf3SStefano Zampini ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr); 35b147fbf3SStefano Zampini ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr); 36b147fbf3SStefano Zampini ierr = MatSetUp(preallocator);CHKERRQ(ierr); 37b147fbf3SStefano Zampini ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr); 38b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 39b147fbf3SStefano Zampini PetscInt ncols; 40b147fbf3SStefano Zampini const PetscInt *row; 41b147fbf3SStefano Zampini const PetscScalar *vals; 42b147fbf3SStefano Zampini 43b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 44b147fbf3SStefano Zampini ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 45b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 46b147fbf3SStefano Zampini if (symm && symm[i]) { 47b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 48b147fbf3SStefano Zampini } 49b147fbf3SStefano Zampini ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 50b147fbf3SStefano Zampini } 51b147fbf3SStefano Zampini } 52b147fbf3SStefano Zampini ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 53b147fbf3SStefano Zampini ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 54b147fbf3SStefano Zampini ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr); 55b147fbf3SStefano Zampini ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 56b147fbf3SStefano Zampini PetscFunctionReturn(0); 57b147fbf3SStefano Zampini } 58b147fbf3SStefano Zampini 59b147fbf3SStefano Zampini static PetscErrorCode MatConvert_MPISBAIJ_XAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 60b147fbf3SStefano Zampini { 61b147fbf3SStefano Zampini Mat B; 62b147fbf3SStefano Zampini PetscErrorCode ierr; 63b147fbf3SStefano Zampini PetscInt r; 64b147fbf3SStefano Zampini 65b147fbf3SStefano Zampini PetscFunctionBegin; 66b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 67b147fbf3SStefano Zampini PetscBool symm = PETSC_TRUE; 68b147fbf3SStefano Zampini PetscInt bs; 69b147fbf3SStefano Zampini 70b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 71b147fbf3SStefano Zampini ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 72b147fbf3SStefano Zampini ierr = MatSetType(B,newtype);CHKERRQ(ierr); 73b147fbf3SStefano Zampini ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr); 74b147fbf3SStefano Zampini ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr); 75b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 76b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 77b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 78b147fbf3SStefano Zampini ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr); 79b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 80b147fbf3SStefano Zampini } else B = *newmat; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 83b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 84b147fbf3SStefano Zampini PetscInt ncols; 85b147fbf3SStefano Zampini const PetscInt *row; 86b147fbf3SStefano Zampini const PetscScalar *vals; 87b147fbf3SStefano Zampini 88b147fbf3SStefano Zampini ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 89b147fbf3SStefano Zampini ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 90b147fbf3SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 91b147fbf3SStefano Zampini ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 92b147fbf3SStefano Zampini } 93b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 94b147fbf3SStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 95b147fbf3SStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 96b147fbf3SStefano Zampini 97b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 98b147fbf3SStefano Zampini ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 99b147fbf3SStefano Zampini } else { 100b147fbf3SStefano Zampini *newmat = B; 101b147fbf3SStefano Zampini } 102b147fbf3SStefano Zampini PetscFunctionReturn(0); 103b147fbf3SStefano Zampini } 104b147fbf3SStefano Zampini 1057087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 106a30f8f8cSSatish Balay { 107f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 108dfbe8321SBarry Smith PetscErrorCode ierr; 109a30f8f8cSSatish Balay 110a30f8f8cSSatish Balay PetscFunctionBegin; 111a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 112a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 113a30f8f8cSSatish Balay PetscFunctionReturn(0); 114a30f8f8cSSatish Balay } 115a30f8f8cSSatish Balay 1167087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 117a30f8f8cSSatish Balay { 118f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 119dfbe8321SBarry Smith PetscErrorCode ierr; 120a30f8f8cSSatish Balay 121a30f8f8cSSatish Balay PetscFunctionBegin; 122a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 123a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 124a30f8f8cSSatish Balay PetscFunctionReturn(0); 125a30f8f8cSSatish Balay } 126a30f8f8cSSatish Balay 127d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 128a30f8f8cSSatish Balay { \ 129a30f8f8cSSatish Balay brow = row/bs; \ 130a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 131a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 132a30f8f8cSSatish Balay bcol = col/bs; \ 133a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 134a30f8f8cSSatish Balay low = 0; high = nrow; \ 135a30f8f8cSSatish Balay while (high-low > 3) { \ 136a30f8f8cSSatish Balay t = (low+high)/2; \ 137a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 138a30f8f8cSSatish Balay else low = t; \ 139a30f8f8cSSatish Balay } \ 140a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 141a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 142a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 143a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 144a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 145a30f8f8cSSatish Balay else *bap = value; \ 146a30f8f8cSSatish Balay goto a_noinsert; \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay } \ 149a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 150d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 151fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 152a30f8f8cSSatish Balay N = nrow++ - 1; \ 153a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 154580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 155580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 156580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 157a30f8f8cSSatish Balay rp[_i] = bcol; \ 158a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 159e56f5c9eSBarry Smith A->nonzerostate++;\ 160a30f8f8cSSatish Balay a_noinsert:; \ 161a30f8f8cSSatish Balay ailen[brow] = nrow; \ 162a30f8f8cSSatish Balay } 163e5e170daSBarry Smith 164d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 165a30f8f8cSSatish Balay { \ 166a30f8f8cSSatish Balay brow = row/bs; \ 167a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 168a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 169a30f8f8cSSatish Balay bcol = col/bs; \ 170a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 171a30f8f8cSSatish Balay low = 0; high = nrow; \ 172a30f8f8cSSatish Balay while (high-low > 3) { \ 173a30f8f8cSSatish Balay t = (low+high)/2; \ 174a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 175a30f8f8cSSatish Balay else low = t; \ 176a30f8f8cSSatish Balay } \ 177a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 178a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 179a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 180a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 181a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 182a30f8f8cSSatish Balay else *bap = value; \ 183a30f8f8cSSatish Balay goto b_noinsert; \ 184a30f8f8cSSatish Balay } \ 185a30f8f8cSSatish Balay } \ 186a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 187d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 188fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 189a30f8f8cSSatish Balay N = nrow++ - 1; \ 190a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 191580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 192580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 193580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 194a30f8f8cSSatish Balay rp[_i] = bcol; \ 195a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 196e56f5c9eSBarry Smith B->nonzerostate++;\ 197a30f8f8cSSatish Balay b_noinsert:; \ 198a30f8f8cSSatish Balay bilen[brow] = nrow; \ 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 202a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 203a30f8f8cSSatish Balay */ 204dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 205a30f8f8cSSatish Balay { 206a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 207a30f8f8cSSatish Balay MatScalar value; 208ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 209dfbe8321SBarry Smith PetscErrorCode ierr; 2101302d50aSBarry Smith PetscInt i,j,row,col; 211d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 212d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 213d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 214a30f8f8cSSatish Balay 215a30f8f8cSSatish Balay /* Some Variables required in the macro */ 216a30f8f8cSSatish Balay Mat A = baij->A; 217a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2181302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 219a30f8f8cSSatish Balay MatScalar *aa =a->a; 220a30f8f8cSSatish Balay 221a30f8f8cSSatish Balay Mat B = baij->B; 222a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2231302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 224a30f8f8cSSatish Balay MatScalar *ba =b->a; 225a30f8f8cSSatish Balay 2261302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2271302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 228a30f8f8cSSatish Balay MatScalar *ap,*bap; 229a30f8f8cSSatish Balay 230a30f8f8cSSatish Balay /* for stash */ 2310298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2320298fd71SBarry Smith MatScalar *v_loc = NULL; 233a30f8f8cSSatish Balay 234a30f8f8cSSatish Balay PetscFunctionBegin; 235a30f8f8cSSatish Balay if (!baij->donotstash) { 23659ffdab8SBarry Smith if (n > baij->n_loc) { 23759ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 23859ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 239785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 240785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 24126fbe8dcSKarl Rupp 24259ffdab8SBarry Smith baij->n_loc = n; 24359ffdab8SBarry Smith } 24459ffdab8SBarry Smith in_loc = baij->in_loc; 24559ffdab8SBarry Smith v_loc = baij->v_loc; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay 248a30f8f8cSSatish Balay for (i=0; i<m; i++) { 249a30f8f8cSSatish Balay if (im[i] < 0) continue; 2502515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 251e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 252a30f8f8cSSatish Balay #endif 253a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 254a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 255a30f8f8cSSatish Balay for (j=0; j<n; j++) { 25601b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 25701b2bd88SHong Zhang if (a->ignore_ltriangular) { 25801b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 25926fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 26001b2bd88SHong Zhang } 261a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 262a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 263a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 264a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 265db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 266db4deed7SKarl Rupp else value = v[i+j*m]; 267d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 268a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 269a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 271cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 272a30f8f8cSSatish Balay #endif 273a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 274a30f8f8cSSatish Balay if (mat->was_assembled) { 275a30f8f8cSSatish Balay if (!baij->colmap) { 276ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 279a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28071730473SSatish Balay col = col - 1; 281a30f8f8cSSatish Balay #else 28271730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 283a30f8f8cSSatish Balay #endif 284a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 285ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 286a30f8f8cSSatish Balay col = in[j]; 287a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 288a30f8f8cSSatish Balay B = baij->B; 289a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 290a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 291a30f8f8cSSatish Balay ba = b->a; 29271730473SSatish Balay } else col += in[j]%bs; 293a30f8f8cSSatish Balay } else col = in[j]; 294db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 295db4deed7SKarl Rupp else value = v[i+j*m]; 296d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 297a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 298a30f8f8cSSatish Balay } 299a30f8f8cSSatish Balay } 300a30f8f8cSSatish Balay } else { /* off processor entry */ 3014cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 302a30f8f8cSSatish Balay if (!baij->donotstash) { 3035080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 304a30f8f8cSSatish Balay n_loc = 0; 305a30f8f8cSSatish Balay for (j=0; j<n; j++) { 306f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 307a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 308a30f8f8cSSatish Balay if (roworiented) { 309a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 310a30f8f8cSSatish Balay } else { 311a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 312a30f8f8cSSatish Balay } 313a30f8f8cSSatish Balay n_loc++; 314a30f8f8cSSatish Balay } 315b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay } 319a30f8f8cSSatish Balay PetscFunctionReturn(0); 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay 32236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 32336bd2089SBarry Smith { 32436bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 32536bd2089SBarry Smith PetscErrorCode ierr; 32636bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 32736bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 32836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 32936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 33036bd2089SBarry Smith const PetscScalar *value = v; 33136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 33236bd2089SBarry Smith 33336bd2089SBarry Smith PetscFunctionBegin; 33436bd2089SBarry Smith if (col < row) { 33536bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 33636bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33736bd2089SBarry Smith } 33836bd2089SBarry Smith rp = aj + ai[row]; 33936bd2089SBarry Smith ap = aa + bs2*ai[row]; 34036bd2089SBarry Smith rmax = imax[row]; 34136bd2089SBarry Smith nrow = ailen[row]; 34236bd2089SBarry Smith value = v; 34336bd2089SBarry Smith low = 0; 34436bd2089SBarry Smith high = nrow; 34536bd2089SBarry Smith 34636bd2089SBarry Smith while (high-low > 7) { 34736bd2089SBarry Smith t = (low+high)/2; 34836bd2089SBarry Smith if (rp[t] > col) high = t; 34936bd2089SBarry Smith else low = t; 35036bd2089SBarry Smith } 35136bd2089SBarry Smith for (i=low; i<high; i++) { 35236bd2089SBarry Smith if (rp[i] > col) break; 35336bd2089SBarry Smith if (rp[i] == col) { 35436bd2089SBarry Smith bap = ap + bs2*i; 35536bd2089SBarry Smith if (roworiented) { 35636bd2089SBarry Smith if (is == ADD_VALUES) { 35736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 35836bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 35936bd2089SBarry Smith bap[jj] += *value++; 36036bd2089SBarry Smith } 36136bd2089SBarry Smith } 36236bd2089SBarry Smith } else { 36336bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 36436bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 36536bd2089SBarry Smith bap[jj] = *value++; 36636bd2089SBarry Smith } 36736bd2089SBarry Smith } 36836bd2089SBarry Smith } 36936bd2089SBarry Smith } else { 37036bd2089SBarry Smith if (is == ADD_VALUES) { 37136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37236bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 37336bd2089SBarry Smith *bap++ += *value++; 37436bd2089SBarry Smith } 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } else { 37736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37836bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 37936bd2089SBarry Smith *bap++ = *value++; 38036bd2089SBarry Smith } 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith goto noinsert2; 38536bd2089SBarry Smith } 38636bd2089SBarry Smith } 38736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 38836bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 38936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 39036bd2089SBarry Smith N = nrow++ - 1; high++; 39136bd2089SBarry Smith /* shift up all the later entries in this row */ 392580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 393580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 39436bd2089SBarry Smith rp[i] = col; 39536bd2089SBarry Smith bap = ap + bs2*i; 39636bd2089SBarry Smith if (roworiented) { 39736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39836bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 39936bd2089SBarry Smith bap[jj] = *value++; 40036bd2089SBarry Smith } 40136bd2089SBarry Smith } 40236bd2089SBarry Smith } else { 40336bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 40436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 40536bd2089SBarry Smith *bap++ = *value++; 40636bd2089SBarry Smith } 40736bd2089SBarry Smith } 40836bd2089SBarry Smith } 40936bd2089SBarry Smith noinsert2:; 41036bd2089SBarry Smith ailen[row] = nrow; 41136bd2089SBarry Smith PetscFunctionReturn(0); 41236bd2089SBarry Smith } 41336bd2089SBarry Smith 41436bd2089SBarry Smith /* 41536bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 41636bd2089SBarry Smith */ 41736bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 41836bd2089SBarry Smith { 41936bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 42036bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 42136bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 42236bd2089SBarry Smith PetscErrorCode ierr; 42336bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 42436bd2089SBarry Smith PetscBool roworiented=a->roworiented; 42536bd2089SBarry Smith const PetscScalar *value = v; 42636bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 42736bd2089SBarry Smith 42836bd2089SBarry Smith PetscFunctionBegin; 42936bd2089SBarry Smith rp = aj + ai[row]; 43036bd2089SBarry Smith ap = aa + bs2*ai[row]; 43136bd2089SBarry Smith rmax = imax[row]; 43236bd2089SBarry Smith nrow = ailen[row]; 43336bd2089SBarry Smith low = 0; 43436bd2089SBarry Smith high = nrow; 43536bd2089SBarry Smith value = v; 43636bd2089SBarry Smith while (high-low > 7) { 43736bd2089SBarry Smith t = (low+high)/2; 43836bd2089SBarry Smith if (rp[t] > col) high = t; 43936bd2089SBarry Smith else low = t; 44036bd2089SBarry Smith } 44136bd2089SBarry Smith for (i=low; i<high; i++) { 44236bd2089SBarry Smith if (rp[i] > col) break; 44336bd2089SBarry Smith if (rp[i] == col) { 44436bd2089SBarry Smith bap = ap + bs2*i; 44536bd2089SBarry Smith if (roworiented) { 44636bd2089SBarry Smith if (is == ADD_VALUES) { 44736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 44836bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 44936bd2089SBarry Smith bap[jj] += *value++; 45036bd2089SBarry Smith } 45136bd2089SBarry Smith } 45236bd2089SBarry Smith } else { 45336bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 45436bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 45536bd2089SBarry Smith bap[jj] = *value++; 45636bd2089SBarry Smith } 45736bd2089SBarry Smith } 45836bd2089SBarry Smith } 45936bd2089SBarry Smith } else { 46036bd2089SBarry Smith if (is == ADD_VALUES) { 46136bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 46236bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 46336bd2089SBarry Smith bap[jj] += value[jj]; 46436bd2089SBarry Smith } 46536bd2089SBarry Smith bap += bs; 46636bd2089SBarry Smith } 46736bd2089SBarry Smith } else { 46836bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 46936bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 47036bd2089SBarry Smith bap[jj] = value[jj]; 47136bd2089SBarry Smith } 47236bd2089SBarry Smith bap += bs; 47336bd2089SBarry Smith } 47436bd2089SBarry Smith } 47536bd2089SBarry Smith } 47636bd2089SBarry Smith goto noinsert2; 47736bd2089SBarry Smith } 47836bd2089SBarry Smith } 47936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 48036bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 48136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 48236bd2089SBarry Smith N = nrow++ - 1; high++; 48336bd2089SBarry Smith /* shift up all the later entries in this row */ 484580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 485580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 48636bd2089SBarry Smith rp[i] = col; 48736bd2089SBarry Smith bap = ap + bs2*i; 48836bd2089SBarry Smith if (roworiented) { 48936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 49036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 49136bd2089SBarry Smith bap[jj] = *value++; 49236bd2089SBarry Smith } 49336bd2089SBarry Smith } 49436bd2089SBarry Smith } else { 49536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 49636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 49736bd2089SBarry Smith *bap++ = *value++; 49836bd2089SBarry Smith } 49936bd2089SBarry Smith } 50036bd2089SBarry Smith } 50136bd2089SBarry Smith noinsert2:; 50236bd2089SBarry Smith ailen[row] = nrow; 50336bd2089SBarry Smith PetscFunctionReturn(0); 50436bd2089SBarry Smith } 50536bd2089SBarry Smith 50636bd2089SBarry Smith /* 50736bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 50836bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 50936bd2089SBarry Smith */ 510dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 511a30f8f8cSSatish Balay { 5120880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 513f15d580aSBarry Smith const MatScalar *value; 514f15d580aSBarry Smith MatScalar *barray =baij->barray; 515ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 516dfbe8321SBarry Smith PetscErrorCode ierr; 517899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 518899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 519d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 5200880e062SHong Zhang 521a30f8f8cSSatish Balay PetscFunctionBegin; 5220880e062SHong Zhang if (!barray) { 523785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 5240880e062SHong Zhang baij->barray = barray; 5250880e062SHong Zhang } 5260880e062SHong Zhang 5270880e062SHong Zhang if (roworiented) { 5280880e062SHong Zhang stepval = (n-1)*bs; 5290880e062SHong Zhang } else { 5300880e062SHong Zhang stepval = (m-1)*bs; 5310880e062SHong Zhang } 5320880e062SHong Zhang for (i=0; i<m; i++) { 5330880e062SHong Zhang if (im[i] < 0) continue; 5342515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 535bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 5360880e062SHong Zhang #endif 5370880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5380880e062SHong Zhang row = im[i] - rstart; 5390880e062SHong Zhang for (j=0; j<n; j++) { 540f3f98c53SJed Brown if (im[i] > in[j]) { 541f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 542e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 543f3f98c53SJed Brown } 5440880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5450880e062SHong Zhang if ((roworiented) && (n == 1)) { 546f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 5470880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 548f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 5490880e062SHong Zhang } else { /* Here a copy is required */ 5500880e062SHong Zhang if (roworiented) { 5510880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 5520880e062SHong Zhang } else { 5530880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 5540880e062SHong Zhang } 5550880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5560880e062SHong Zhang for (jj=0; jj<bs; jj++) { 5570880e062SHong Zhang *barray++ = *value++; 5580880e062SHong Zhang } 5590880e062SHong Zhang } 5600880e062SHong Zhang barray -=bs2; 5610880e062SHong Zhang } 5620880e062SHong Zhang 5630880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5640880e062SHong Zhang col = in[j] - cstart; 56536bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 56626fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 5672515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 568bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5690880e062SHong Zhang #endif 5700880e062SHong Zhang else { 5710880e062SHong Zhang if (mat->was_assembled) { 5720880e062SHong Zhang if (!baij->colmap) { 573ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5740880e062SHong Zhang } 5750880e062SHong Zhang 5762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5770880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5781302d50aSBarry Smith { PetscInt data; 5790880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 580e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5810880e062SHong Zhang } 5820880e062SHong Zhang #else 583e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5840880e062SHong Zhang #endif 5850880e062SHong Zhang #endif 5860880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5870880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5880880e062SHong Zhang col = (col - 1)/bs; 5890880e062SHong Zhang #else 5900880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5910880e062SHong Zhang #endif 5920880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 593ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5940880e062SHong Zhang col = in[j]; 5950880e062SHong Zhang } 59626fbe8dcSKarl Rupp } else col = in[j]; 59736bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 5980880e062SHong Zhang } 5990880e062SHong Zhang } 6000880e062SHong Zhang } else { 601bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 6020880e062SHong Zhang if (!baij->donotstash) { 6030880e062SHong Zhang if (roworiented) { 6040880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6050880e062SHong Zhang } else { 6060880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6070880e062SHong Zhang } 6080880e062SHong Zhang } 6090880e062SHong Zhang } 6100880e062SHong Zhang } 6110880e062SHong Zhang PetscFunctionReturn(0); 612a30f8f8cSSatish Balay } 613a30f8f8cSSatish Balay 6141302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 615a30f8f8cSSatish Balay { 616f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 6176849ba73SBarry Smith PetscErrorCode ierr; 618d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 619d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 620a30f8f8cSSatish Balay 621a30f8f8cSSatish Balay PetscFunctionBegin; 622a30f8f8cSSatish Balay for (i=0; i<m; i++) { 623e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 624e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 625a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 626a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 627a30f8f8cSSatish Balay for (j=0; j<n; j++) { 628e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 629e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 630a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 631a30f8f8cSSatish Balay col = idxn[j] - bscstart; 632c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 633a30f8f8cSSatish Balay } else { 634a30f8f8cSSatish Balay if (!baij->colmap) { 635ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 636a30f8f8cSSatish Balay } 637a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 638a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 639a30f8f8cSSatish Balay data--; 640a30f8f8cSSatish Balay #else 641a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 642a30f8f8cSSatish Balay #endif 643a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 644a30f8f8cSSatish Balay else { 645a30f8f8cSSatish Balay col = data + idxn[j]%bs; 646e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay } 650f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 651a30f8f8cSSatish Balay } 652a30f8f8cSSatish Balay PetscFunctionReturn(0); 653a30f8f8cSSatish Balay } 654a30f8f8cSSatish Balay 655dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 656a30f8f8cSSatish Balay { 657a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 658dfbe8321SBarry Smith PetscErrorCode ierr; 659a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 660a30f8f8cSSatish Balay 661a30f8f8cSSatish Balay PetscFunctionBegin; 662a30f8f8cSSatish Balay if (baij->size == 1) { 663a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 664a30f8f8cSSatish Balay } else { 665a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 666785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 667a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 668a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 669a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 670a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 671b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6728f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 673a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6740b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6750b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6760b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6770b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 678899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 679d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6800b8dc8d2SHong Zhang MatScalar *v; 6810b8dc8d2SHong Zhang 682dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 683580bdb30SBarry Smith ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr); 6840b8dc8d2SHong Zhang /* Amat */ 6850b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6860b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6870b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6880b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6890b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6900b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6910b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6920b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6930b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6940b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6950b8dc8d2SHong Zhang /* non-diagonal block */ 6960b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 6970b8dc8d2SHong Zhang } 6980b8dc8d2SHong Zhang } 6990b8dc8d2SHong Zhang } 70051f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7010b8dc8d2SHong Zhang } 7020b8dc8d2SHong Zhang /* Bmat */ 7030b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 7040b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7050b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7060b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 7070b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7080b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 7090b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7100b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7110b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7120b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7130b8dc8d2SHong Zhang rsum[grow+row] += vabs; 7140b8dc8d2SHong Zhang } 7150b8dc8d2SHong Zhang } 7160b8dc8d2SHong Zhang } 71751f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7180b8dc8d2SHong Zhang } 719b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7200b8dc8d2SHong Zhang *norm = 0.0; 721d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 7220b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7230b8dc8d2SHong Zhang } 72474ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 725f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 726a30f8f8cSSatish Balay } 727a30f8f8cSSatish Balay PetscFunctionReturn(0); 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 730dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 731a30f8f8cSSatish Balay { 732a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 733dfbe8321SBarry Smith PetscErrorCode ierr; 7341302d50aSBarry Smith PetscInt nstash,reallocs; 735a30f8f8cSSatish Balay 736a30f8f8cSSatish Balay PetscFunctionBegin; 73726fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 738a30f8f8cSSatish Balay 739d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 7401e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 741a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7421e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 743a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7441e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 745a30f8f8cSSatish Balay PetscFunctionReturn(0); 746a30f8f8cSSatish Balay } 747a30f8f8cSSatish Balay 748dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 749a30f8f8cSSatish Balay { 750a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 751a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 7526849ba73SBarry Smith PetscErrorCode ierr; 75313f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 754e44c0bd4SBarry Smith PetscInt *row,*col; 755ace3abfcSBarry Smith PetscBool other_disassembled; 75613f74950SBarry Smith PetscMPIInt n; 757ace3abfcSBarry Smith PetscBool r1,r2,r3; 758a30f8f8cSSatish Balay MatScalar *val; 759a30f8f8cSSatish Balay 76091c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 761a30f8f8cSSatish Balay PetscFunctionBegin; 7624cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 763a30f8f8cSSatish Balay while (1) { 764a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 765a30f8f8cSSatish Balay if (!flg) break; 766a30f8f8cSSatish Balay 767a30f8f8cSSatish Balay for (i=0; i<n;) { 768a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 76926fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 77026fbe8dcSKarl Rupp if (row[j] != rstart) break; 77126fbe8dcSKarl Rupp } 772a30f8f8cSSatish Balay if (j < n) ncols = j-i; 773a30f8f8cSSatish Balay else ncols = n-i; 774a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7754b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 776a30f8f8cSSatish Balay i = j; 777a30f8f8cSSatish Balay } 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 780a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 781a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 782a30f8f8cSSatish Balay restore the original flags */ 783a30f8f8cSSatish Balay r1 = baij->roworiented; 784a30f8f8cSSatish Balay r2 = a->roworiented; 78591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 78626fbe8dcSKarl Rupp 787a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 788a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 78926fbe8dcSKarl Rupp 79091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 791a30f8f8cSSatish Balay while (1) { 792a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 793a30f8f8cSSatish Balay if (!flg) break; 794a30f8f8cSSatish Balay 795a30f8f8cSSatish Balay for (i=0; i<n;) { 796a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 79726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 79826fbe8dcSKarl Rupp if (row[j] != rstart) break; 79926fbe8dcSKarl Rupp } 800a30f8f8cSSatish Balay if (j < n) ncols = j-i; 801a30f8f8cSSatish Balay else ncols = n-i; 8024b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 803a30f8f8cSSatish Balay i = j; 804a30f8f8cSSatish Balay } 805a30f8f8cSSatish Balay } 806a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 80726fbe8dcSKarl Rupp 808a30f8f8cSSatish Balay baij->roworiented = r1; 809a30f8f8cSSatish Balay a->roworiented = r2; 81026fbe8dcSKarl Rupp 81191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 812a30f8f8cSSatish Balay } 813a30f8f8cSSatish Balay 814a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 815a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 816a30f8f8cSSatish Balay 817a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 818a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 819a30f8f8cSSatish Balay /* 820a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 821a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 822a30f8f8cSSatish Balay */ 823a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 824b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 825a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 826ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 827a30f8f8cSSatish Balay } 828a30f8f8cSSatish Balay } 829a30f8f8cSSatish Balay 830a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 83140781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 832a30f8f8cSSatish Balay } 833a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 834a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 835a30f8f8cSSatish Balay 83674ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 83726fbe8dcSKarl Rupp 838a30f8f8cSSatish Balay baij->rowvalues = 0; 8394f9cfa9eSBarry Smith 8404f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8414f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 842e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 843b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 844e56f5c9eSBarry Smith } 845a30f8f8cSSatish Balay PetscFunctionReturn(0); 846a30f8f8cSSatish Balay } 847a30f8f8cSSatish Balay 848dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 8499804daf3SBarry Smith #include <petscdraw.h> 8506849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 851a30f8f8cSSatish Balay { 852a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 853dfbe8321SBarry Smith PetscErrorCode ierr; 854d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8557da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 856ace3abfcSBarry Smith PetscBool iascii,isdraw; 857b0a32e0cSBarry Smith PetscViewer sviewer; 858f3ef73ceSBarry Smith PetscViewerFormat format; 859a30f8f8cSSatish Balay 860a30f8f8cSSatish Balay PetscFunctionBegin; 861251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 862251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 86332077d6dSBarry Smith if (iascii) { 864b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 865456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 866a30f8f8cSSatish Balay MatInfo info; 867ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 868a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8691575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 870b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 871a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 872e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 873a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 874e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 875b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8761575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 87707d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 878a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 879a30f8f8cSSatish Balay PetscFunctionReturn(0); 880fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 88177431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 882a30f8f8cSSatish Balay PetscFunctionReturn(0); 883c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 884c1490034SHong Zhang PetscFunctionReturn(0); 885a30f8f8cSSatish Balay } 886a30f8f8cSSatish Balay } 887a30f8f8cSSatish Balay 888a30f8f8cSSatish Balay if (isdraw) { 889b0a32e0cSBarry Smith PetscDraw draw; 890ace3abfcSBarry Smith PetscBool isnull; 891b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 89245f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 89345f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 8967da1fb6eSBarry Smith { 897a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 898a30f8f8cSSatish Balay Mat A; 89965d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 90065d70643SHong Zhang Mat_SeqBAIJ *Bloc; 901d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 902a30f8f8cSSatish Balay MatScalar *a; 9033e219373SBarry Smith const char *matname; 904a30f8f8cSSatish Balay 905f204ca49SKris Buschelman /* Should this be the same type as mat? */ 906ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 907a30f8f8cSSatish Balay if (!rank) { 908f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 909a30f8f8cSSatish Balay } else { 910f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 911a30f8f8cSSatish Balay } 912f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 9130298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 9142b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 9153bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 916a30f8f8cSSatish Balay 917a30f8f8cSSatish Balay /* copy over the A part */ 91865d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 919a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 920785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 921a30f8f8cSSatish Balay 922a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 923e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 92426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 925a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 926e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 927a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 928dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 92926fbe8dcSKarl Rupp col++; 93026fbe8dcSKarl Rupp a += bs; 931a30f8f8cSSatish Balay } 932a30f8f8cSSatish Balay } 933a30f8f8cSSatish Balay } 934a30f8f8cSSatish Balay /* copy over the B part */ 93565d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 93665d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 937a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 938e9f7bc9eSHong Zhang 939e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 94026fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 941a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 942a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 943a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 944799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 94526fbe8dcSKarl Rupp col++; 94626fbe8dcSKarl Rupp a += bs; 947a30f8f8cSSatish Balay } 948a30f8f8cSSatish Balay } 949a30f8f8cSSatish Balay } 950a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 951a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 952a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 953a30f8f8cSSatish Balay /* 954a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 955b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 956a30f8f8cSSatish Balay */ 9573f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 958ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9593e219373SBarry Smith if (!rank) { 960ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 961383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 962a30f8f8cSSatish Balay } 9633f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9641575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9656bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 966a30f8f8cSSatish Balay } 967a30f8f8cSSatish Balay PetscFunctionReturn(0); 968a30f8f8cSSatish Balay } 969a30f8f8cSSatish Balay 970d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer) 971d1654148SHong Zhang { 972d1654148SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data; 973d1654148SHong Zhang Mat_SeqSBAIJ *A = (Mat_SeqSBAIJ*)a->A->data; 974d1654148SHong Zhang Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 975d1654148SHong Zhang PetscErrorCode ierr; 976d1654148SHong Zhang PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 977d1654148SHong Zhang PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 978d1654148SHong Zhang int fd; 979d1654148SHong Zhang PetscScalar *column_values; 980d1654148SHong Zhang FILE *file; 981d1654148SHong Zhang PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 982d1654148SHong Zhang PetscInt message_count,flowcontrolcount; 983d1654148SHong Zhang 984d1654148SHong Zhang PetscFunctionBegin; 985d1654148SHong Zhang ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 986d1654148SHong Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 987d1654148SHong Zhang nz = bs2*(A->nz + B->nz); 988d1654148SHong Zhang rlen = mat->rmap->n; 989d1654148SHong Zhang ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 990d1654148SHong Zhang if (!rank) { 991d1654148SHong Zhang header[0] = MAT_FILE_CLASSID; 992d1654148SHong Zhang header[1] = mat->rmap->N; 993d1654148SHong Zhang header[2] = mat->cmap->N; 994d1654148SHong Zhang 995d1654148SHong Zhang ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 996d1654148SHong Zhang ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 997d1654148SHong Zhang /* get largest number of rows any processor has */ 998d1654148SHong Zhang range = mat->rmap->range; 999d1654148SHong Zhang for (i=1; i<size; i++) { 1000d1654148SHong Zhang rlen = PetscMax(rlen,range[i+1] - range[i]); 1001d1654148SHong Zhang } 1002d1654148SHong Zhang } else { 1003d1654148SHong Zhang ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1004d1654148SHong Zhang } 1005d1654148SHong Zhang 1006d1654148SHong Zhang ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr); 1007d1654148SHong Zhang /* compute lengths of each row */ 1008d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1009d1654148SHong Zhang crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 1010d1654148SHong Zhang } 1011d1654148SHong Zhang /* store the row lengths to the file */ 1012d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1013d1654148SHong Zhang if (!rank) { 1014d1654148SHong Zhang MPI_Status status; 1015d1654148SHong Zhang ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr); 1016d1654148SHong Zhang rlen = (range[1] - range[0])/bs; 1017d1654148SHong Zhang for (i=0; i<rlen; i++) { 1018d1654148SHong Zhang for (j=0; j<bs; j++) { 1019d1654148SHong Zhang row_lens[i*bs+j] = bs*crow_lens[i]; 1020d1654148SHong Zhang } 1021d1654148SHong Zhang } 1022d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1023d1654148SHong Zhang for (i=1; i<size; i++) { 1024d1654148SHong Zhang rlen = (range[i+1] - range[i])/bs; 1025d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1026d1654148SHong Zhang ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1027d1654148SHong Zhang for (k=0; k<rlen; k++) { 1028d1654148SHong Zhang for (j=0; j<bs; j++) { 1029d1654148SHong Zhang row_lens[k*bs+j] = bs*crow_lens[k]; 1030d1654148SHong Zhang } 1031d1654148SHong Zhang } 1032d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1033d1654148SHong Zhang } 1034d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1035d1654148SHong Zhang ierr = PetscFree(row_lens);CHKERRQ(ierr); 1036d1654148SHong Zhang } else { 1037d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1038d1654148SHong Zhang ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1039d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1040d1654148SHong Zhang } 1041d1654148SHong Zhang ierr = PetscFree(crow_lens);CHKERRQ(ierr); 1042d1654148SHong Zhang 1043d1654148SHong Zhang /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 1044d1654148SHong Zhang information needed to make it for each row from a block row. This does require more communication but still not more than 1045d1654148SHong Zhang the communication needed for the nonzero values */ 1046d1654148SHong Zhang nzmax = nz; /* space a largest processor needs */ 1047d1654148SHong Zhang ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1048d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr); 1049d1654148SHong Zhang cnt = 0; 1050d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1051d1654148SHong Zhang pcnt = cnt; 1052d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 1053d1654148SHong Zhang if ((col = garray[B->j[j]]) > cstart) break; 1054d1654148SHong Zhang for (l=0; l<bs; l++) { 1055d1654148SHong Zhang column_indices[cnt++] = bs*col+l; 1056d1654148SHong Zhang } 1057d1654148SHong Zhang } 1058d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1059d1654148SHong Zhang for (l=0; l<bs; l++) { 1060d1654148SHong Zhang column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1061d1654148SHong Zhang } 1062d1654148SHong Zhang } 1063d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1064d1654148SHong Zhang for (l=0; l<bs; l++) { 1065d1654148SHong Zhang column_indices[cnt++] = bs*garray[B->j[j]]+l; 1066d1654148SHong Zhang } 1067d1654148SHong Zhang } 1068d1654148SHong Zhang len = cnt - pcnt; 1069d1654148SHong Zhang for (k=1; k<bs; k++) { 1070580bdb30SBarry Smith ierr = PetscArraycpy(&column_indices[cnt],&column_indices[pcnt],len);CHKERRQ(ierr); 1071d1654148SHong Zhang cnt += len; 1072d1654148SHong Zhang } 1073d1654148SHong Zhang } 1074d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1075d1654148SHong Zhang 1076d1654148SHong Zhang /* store the columns to the file */ 1077d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1078d1654148SHong Zhang if (!rank) { 1079d1654148SHong Zhang MPI_Status status; 1080d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1081d1654148SHong Zhang for (i=1; i<size; i++) { 1082d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1083d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1084d1654148SHong Zhang ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1085d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1086d1654148SHong Zhang } 1087d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1088d1654148SHong Zhang } else { 1089d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1090d1654148SHong Zhang ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1091d1654148SHong Zhang ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1092d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1093d1654148SHong Zhang } 1094d1654148SHong Zhang ierr = PetscFree(column_indices);CHKERRQ(ierr); 1095d1654148SHong Zhang 1096d1654148SHong Zhang /* load up the numerical values */ 1097d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr); 1098d1654148SHong Zhang cnt = 0; 1099d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1100d1654148SHong Zhang rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1101d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 1102d1654148SHong Zhang if (garray[B->j[j]] > cstart) break; 1103d1654148SHong Zhang for (l=0; l<bs; l++) { 1104d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1105d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1106d1654148SHong Zhang } 1107d1654148SHong Zhang } 1108d1654148SHong Zhang cnt += bs; 1109d1654148SHong Zhang } 1110d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1111d1654148SHong Zhang for (l=0; l<bs; l++) { 1112d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1113d1654148SHong Zhang column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1114d1654148SHong Zhang } 1115d1654148SHong Zhang } 1116d1654148SHong Zhang cnt += bs; 1117d1654148SHong Zhang } 1118d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1119d1654148SHong Zhang for (l=0; l<bs; l++) { 1120d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1121d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1122d1654148SHong Zhang } 1123d1654148SHong Zhang } 1124d1654148SHong Zhang cnt += bs; 1125d1654148SHong Zhang } 1126d1654148SHong Zhang cnt += (bs-1)*rlen; 1127d1654148SHong Zhang } 1128d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1129d1654148SHong Zhang 1130d1654148SHong Zhang /* store the column values to the file */ 1131d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1132d1654148SHong Zhang if (!rank) { 1133d1654148SHong Zhang MPI_Status status; 1134d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1135d1654148SHong Zhang for (i=1; i<size; i++) { 1136d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1137d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1138d1654148SHong Zhang ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1139d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1140d1654148SHong Zhang } 1141d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1142d1654148SHong Zhang } else { 1143d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1144d1654148SHong Zhang ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1145d1654148SHong Zhang ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1146d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1147d1654148SHong Zhang } 1148d1654148SHong Zhang ierr = PetscFree(column_values);CHKERRQ(ierr); 1149d1654148SHong Zhang 1150d1654148SHong Zhang ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1151d1654148SHong Zhang if (file) { 1152d1654148SHong Zhang fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1153d1654148SHong Zhang } 1154d1654148SHong Zhang PetscFunctionReturn(0); 1155d1654148SHong Zhang } 1156d1654148SHong Zhang 1157dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 1158a30f8f8cSSatish Balay { 1159dfbe8321SBarry Smith PetscErrorCode ierr; 1160ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 1161a30f8f8cSSatish Balay 1162a30f8f8cSSatish Balay PetscFunctionBegin; 1163251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1164251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1165251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1166251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1167d1654148SHong Zhang if (iascii || isdraw || issocket) { 1168a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1169d1654148SHong Zhang } else if (isbinary) { 1170d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1171a30f8f8cSSatish Balay } 1172a30f8f8cSSatish Balay PetscFunctionReturn(0); 1173a30f8f8cSSatish Balay } 1174a30f8f8cSSatish Balay 1175dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1176a30f8f8cSSatish Balay { 1177a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1178dfbe8321SBarry Smith PetscErrorCode ierr; 1179a30f8f8cSSatish Balay 1180a30f8f8cSSatish Balay PetscFunctionBegin; 1181a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1182d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1183a30f8f8cSSatish Balay #endif 1184a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1185a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 11866bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 11876bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1188a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 11896bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1190a30f8f8cSSatish Balay #else 119105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1192a30f8f8cSSatish Balay #endif 119305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 11946bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 11956bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 11966bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 11976bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 11986bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 11996bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 12006bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 12016bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 12025755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 120305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 120405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 12056bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 12066bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 12076bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1208ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 120905b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1210a30f8f8cSSatish Balay #endif 121159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 121259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1213899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1214bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1215901853e0SKris Buschelman 1216dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1217bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1218bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1219bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 12206214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 12216214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 12226214f412SHong Zhang #endif 1223b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr); 1224b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr); 1225a30f8f8cSSatish Balay PetscFunctionReturn(0); 1226a30f8f8cSSatish Balay } 1227a30f8f8cSSatish Balay 1228547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1229547795f9SHong Zhang { 1230547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1231547795f9SHong Zhang PetscErrorCode ierr; 1232547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 12336de40e93SBarry Smith PetscScalar *from; 12346de40e93SBarry Smith const PetscScalar *x; 1235547795f9SHong Zhang 1236547795f9SHong Zhang PetscFunctionBegin; 1237547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1238e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1239547795f9SHong Zhang 1240547795f9SHong Zhang /* diagonal part */ 1241547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1242547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1243547795f9SHong Zhang 1244547795f9SHong Zhang /* subdiagonal part */ 1245547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1246547795f9SHong Zhang 1247547795f9SHong Zhang /* copy x into the vec slvec0 */ 1248547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 12496de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1250547795f9SHong Zhang 1251580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1252547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 12536de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1254547795f9SHong Zhang 1255547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1256547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1257547795f9SHong Zhang /* supperdiagonal part */ 1258547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1259547795f9SHong Zhang PetscFunctionReturn(0); 1260547795f9SHong Zhang } 1261547795f9SHong Zhang 1262dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1263a9d4b620SHong Zhang { 1264a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1265dfbe8321SBarry Smith PetscErrorCode ierr; 1266d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1267d9ca1df4SBarry Smith PetscScalar *from; 1268d9ca1df4SBarry Smith const PetscScalar *x; 1269a9d4b620SHong Zhang 1270a9d4b620SHong Zhang PetscFunctionBegin; 1271a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1272e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1273a9d4b620SHong Zhang 1274a9d4b620SHong Zhang /* diagonal part */ 1275a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1276fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1277a9d4b620SHong Zhang 1278a9d4b620SHong Zhang /* subdiagonal part */ 1279a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1280fc165ae2SBarry Smith 1281a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 12821ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1283d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1284a9d4b620SHong Zhang 1285580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1286fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1287d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1288fc165ae2SBarry Smith 1289fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1290ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1291a9d4b620SHong Zhang /* supperdiagonal part */ 1292a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1293a9d4b620SHong Zhang PetscFunctionReturn(0); 1294a9d4b620SHong Zhang } 1295a9d4b620SHong Zhang 1296dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1297a30f8f8cSSatish Balay { 1298a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1299dfbe8321SBarry Smith PetscErrorCode ierr; 13001302d50aSBarry Smith PetscInt nt; 1301a30f8f8cSSatish Balay 1302a30f8f8cSSatish Balay PetscFunctionBegin; 1303a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1304e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1305e7e72b3dSBarry Smith 1306a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1307e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 130865d70643SHong Zhang 1309ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1310b941877fSHong Zhang /* do diagonal part */ 1311b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1312b941877fSHong Zhang /* do supperdiagonal part */ 1313ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1314b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1315b941877fSHong Zhang /* do subdiagonal part */ 1316b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1317ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1318ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay PetscFunctionReturn(0); 1320a30f8f8cSSatish Balay } 1321a30f8f8cSSatish Balay 1322dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1323a30f8f8cSSatish Balay { 1324de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1325dfbe8321SBarry Smith PetscErrorCode ierr; 1326d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1327d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1328d9ca1df4SBarry Smith const PetscScalar *x; 1329a9d4b620SHong Zhang 1330a9d4b620SHong Zhang PetscFunctionBegin; 1331a9d4b620SHong Zhang /* 1332ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 13330ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1334a9d4b620SHong Zhang */ 1335a9d4b620SHong Zhang /* diagonal part */ 1336a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 13372dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1338a9d4b620SHong Zhang 1339a9d4b620SHong Zhang /* subdiagonal part */ 1340a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1341a9d4b620SHong Zhang 1342a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 13431ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1344d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1345580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 13461ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1347a9d4b620SHong Zhang 1348ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1349d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1350ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1351a9d4b620SHong Zhang 1352a9d4b620SHong Zhang /* supperdiagonal part */ 1353a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1354a9d4b620SHong Zhang PetscFunctionReturn(0); 1355a9d4b620SHong Zhang } 1356a9d4b620SHong Zhang 1357dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1358a9d4b620SHong Zhang { 1359a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1360dfbe8321SBarry Smith PetscErrorCode ierr; 1361a30f8f8cSSatish Balay 1362a30f8f8cSSatish Balay PetscFunctionBegin; 1363ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1364b941877fSHong Zhang /* do diagonal part */ 1365b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1366b941877fSHong Zhang /* do supperdiagonal part */ 1367ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1368de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1369de8b6608SHong Zhang 1370b941877fSHong Zhang /* do subdiagonal part */ 1371a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1372ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1373ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1374a30f8f8cSSatish Balay PetscFunctionReturn(0); 1375a30f8f8cSSatish Balay } 1376a30f8f8cSSatish Balay 1377a30f8f8cSSatish Balay /* 1378a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1379a30f8f8cSSatish Balay diagonal block 1380a30f8f8cSSatish Balay */ 1381dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1382a30f8f8cSSatish Balay { 1383a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1384dfbe8321SBarry Smith PetscErrorCode ierr; 1385a30f8f8cSSatish Balay 1386a30f8f8cSSatish Balay PetscFunctionBegin; 1387e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1388a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1389a30f8f8cSSatish Balay PetscFunctionReturn(0); 1390a30f8f8cSSatish Balay } 1391a30f8f8cSSatish Balay 1392f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1393a30f8f8cSSatish Balay { 1394a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1395dfbe8321SBarry Smith PetscErrorCode ierr; 1396a30f8f8cSSatish Balay 1397a30f8f8cSSatish Balay PetscFunctionBegin; 1398f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1399f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1400a30f8f8cSSatish Balay PetscFunctionReturn(0); 1401a30f8f8cSSatish Balay } 1402a30f8f8cSSatish Balay 14031302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1404a30f8f8cSSatish Balay { 1405d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1406d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1407d0d4cfc2SHong Zhang PetscErrorCode ierr; 1408d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1409d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1410899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1411d0d4cfc2SHong Zhang 1412a30f8f8cSSatish Balay PetscFunctionBegin; 1413e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1414d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1415d0d4cfc2SHong Zhang 1416d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1417d0d4cfc2SHong Zhang /* 1418d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1419d0d4cfc2SHong Zhang */ 1420d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1421d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1422d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1423d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1424d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 142526fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1426d0d4cfc2SHong Zhang } 1427dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1428d0d4cfc2SHong Zhang } 1429d0d4cfc2SHong Zhang 1430e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1431d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1432d0d4cfc2SHong Zhang 1433d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1434d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1435d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1436d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1437d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1438d0d4cfc2SHong Zhang nztot = nzA + nzB; 1439d0d4cfc2SHong Zhang 1440d0d4cfc2SHong Zhang cmap = mat->garray; 1441d0d4cfc2SHong Zhang if (v || idx) { 1442d0d4cfc2SHong Zhang if (nztot) { 1443d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1444d0d4cfc2SHong Zhang PetscInt imark = -1; 1445d0d4cfc2SHong Zhang if (v) { 1446d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1447d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1448d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1449d0d4cfc2SHong Zhang else break; 1450d0d4cfc2SHong Zhang } 1451d0d4cfc2SHong Zhang imark = i; 1452d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1453d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1454d0d4cfc2SHong Zhang } 1455d0d4cfc2SHong Zhang if (idx) { 1456d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1457d0d4cfc2SHong Zhang if (imark > -1) { 1458d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1459d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1460d0d4cfc2SHong Zhang } 1461d0d4cfc2SHong Zhang } else { 1462d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 146326fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1464d0d4cfc2SHong Zhang else break; 1465d0d4cfc2SHong Zhang } 1466d0d4cfc2SHong Zhang imark = i; 1467d0d4cfc2SHong Zhang } 1468d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1469d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1470d0d4cfc2SHong Zhang } 1471d0d4cfc2SHong Zhang } else { 1472d0d4cfc2SHong Zhang if (idx) *idx = 0; 1473d0d4cfc2SHong Zhang if (v) *v = 0; 1474d0d4cfc2SHong Zhang } 1475d0d4cfc2SHong Zhang } 1476d0d4cfc2SHong Zhang *nz = nztot; 1477d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1478d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1479a30f8f8cSSatish Balay PetscFunctionReturn(0); 1480a30f8f8cSSatish Balay } 1481a30f8f8cSSatish Balay 14821302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1483a30f8f8cSSatish Balay { 1484a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1485a30f8f8cSSatish Balay 1486a30f8f8cSSatish Balay PetscFunctionBegin; 1487e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1488a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1489a30f8f8cSSatish Balay PetscFunctionReturn(0); 1490a30f8f8cSSatish Balay } 1491a30f8f8cSSatish Balay 1492d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1493d0d4cfc2SHong Zhang { 1494d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1495d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1496d0d4cfc2SHong Zhang 1497d0d4cfc2SHong Zhang PetscFunctionBegin; 1498d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1499d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1500d0d4cfc2SHong Zhang } 1501d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1502d0d4cfc2SHong Zhang { 1503d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1504d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1505d0d4cfc2SHong Zhang 1506d0d4cfc2SHong Zhang PetscFunctionBegin; 1507d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1508d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1509d0d4cfc2SHong Zhang } 1510d0d4cfc2SHong Zhang 151199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 151299cafbc1SBarry Smith { 151399cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 151499cafbc1SBarry Smith PetscErrorCode ierr; 151599cafbc1SBarry Smith 151699cafbc1SBarry Smith PetscFunctionBegin; 151799cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 151899cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 151999cafbc1SBarry Smith PetscFunctionReturn(0); 152099cafbc1SBarry Smith } 152199cafbc1SBarry Smith 152299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 152399cafbc1SBarry Smith { 152499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 152599cafbc1SBarry Smith PetscErrorCode ierr; 152699cafbc1SBarry Smith 152799cafbc1SBarry Smith PetscFunctionBegin; 152899cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 152999cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 153099cafbc1SBarry Smith PetscFunctionReturn(0); 153199cafbc1SBarry Smith } 153299cafbc1SBarry Smith 15337dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 153436032a97SHong Zhang Input: isrow - distributed(parallel), 153536032a97SHong Zhang iscol_local - locally owned (seq) 153636032a97SHong Zhang */ 153736032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 15388f46ffcaSHong Zhang { 15398f46ffcaSHong Zhang PetscErrorCode ierr; 15408f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 15418f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 154236032a97SHong Zhang 154336032a97SHong Zhang PetscFunctionBegin; 15448f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 15458f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 15461098a8e8SHong Zhang if (sz1 > sz2) { 15471098a8e8SHong Zhang *flg = PETSC_FALSE; 15481098a8e8SHong Zhang PetscFunctionReturn(0); 15491098a8e8SHong Zhang } 15508f46ffcaSHong Zhang 15518f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 15528f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 15538f46ffcaSHong Zhang 15548f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 15558f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 1556580bdb30SBarry Smith ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr); 1557580bdb30SBarry Smith ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr); 15588f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 15598f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 15608f46ffcaSHong Zhang 15618f46ffcaSHong Zhang nmatch=0; 15628f46ffcaSHong Zhang k = 0; 15638f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 15648f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 15658f46ffcaSHong Zhang if (a1[i] == a2[j]) { 15668f46ffcaSHong Zhang k = j; nmatch++; 15678f46ffcaSHong Zhang break; 15688f46ffcaSHong Zhang } 15698f46ffcaSHong Zhang } 15708f46ffcaSHong Zhang } 15718f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 15728f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 15738f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 15748f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 15751098a8e8SHong Zhang if (nmatch < sz1) { 15761098a8e8SHong Zhang *flg = PETSC_FALSE; 15771098a8e8SHong Zhang } else { 15781098a8e8SHong Zhang *flg = PETSC_TRUE; 15791098a8e8SHong Zhang } 158036032a97SHong Zhang PetscFunctionReturn(0); 15818f46ffcaSHong Zhang } 158236032a97SHong Zhang 15837dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 158436032a97SHong Zhang { 158536032a97SHong Zhang PetscErrorCode ierr; 158636032a97SHong Zhang IS iscol_local; 158736032a97SHong Zhang PetscInt csize; 158836032a97SHong Zhang PetscBool isequal; 158936032a97SHong Zhang 159036032a97SHong Zhang PetscFunctionBegin; 159136032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 159236032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 159336032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 159436032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 159536032a97SHong Zhang } else { 159636032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 159736032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 159836032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 15998f46ffcaSHong Zhang } 16008f46ffcaSHong Zhang 16017dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 16027dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 16038f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 16048f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 16058f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 16068f46ffcaSHong Zhang } 16078f46ffcaSHong Zhang PetscFunctionReturn(0); 16088f46ffcaSHong Zhang } 16098f46ffcaSHong Zhang 1610dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1611a30f8f8cSSatish Balay { 1612a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1613dfbe8321SBarry Smith PetscErrorCode ierr; 1614a30f8f8cSSatish Balay 1615a30f8f8cSSatish Balay PetscFunctionBegin; 1616a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1617a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1618a30f8f8cSSatish Balay PetscFunctionReturn(0); 1619a30f8f8cSSatish Balay } 1620a30f8f8cSSatish Balay 1621dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1622a30f8f8cSSatish Balay { 1623a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1624a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1625dfbe8321SBarry Smith PetscErrorCode ierr; 1626a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1627a30f8f8cSSatish Balay 1628a30f8f8cSSatish Balay PetscFunctionBegin; 1629d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 163026fbe8dcSKarl Rupp 1631a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 163226fbe8dcSKarl Rupp 1633a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1634a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 163526fbe8dcSKarl Rupp 1636a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 163726fbe8dcSKarl Rupp 1638a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1639a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1640a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1641a30f8f8cSSatish Balay info->nz_used = isend[0]; 1642a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1643a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1644a30f8f8cSSatish Balay info->memory = isend[3]; 1645a30f8f8cSSatish Balay info->mallocs = isend[4]; 1646a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1647b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 164826fbe8dcSKarl Rupp 1649a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1650a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1651a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1652a30f8f8cSSatish Balay info->memory = irecv[3]; 1653a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1654a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1655b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 165626fbe8dcSKarl Rupp 1657a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1658a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1659a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1660a30f8f8cSSatish Balay info->memory = irecv[3]; 1661a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1662f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1663a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1664a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1665a30f8f8cSSatish Balay info->factor_mallocs = 0; 1666a30f8f8cSSatish Balay PetscFunctionReturn(0); 1667a30f8f8cSSatish Balay } 1668a30f8f8cSSatish Balay 1669ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1670a30f8f8cSSatish Balay { 1671a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1672d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1673dfbe8321SBarry Smith PetscErrorCode ierr; 1674a30f8f8cSSatish Balay 1675a30f8f8cSSatish Balay PetscFunctionBegin; 1676e98b92d7SKris Buschelman switch (op) { 1677512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1678e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167928b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1680a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1681c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1682e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 168343674050SBarry Smith MatCheckPreallocated(A,1); 16844e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16854e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1686e98b92d7SKris Buschelman break; 1687e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 168843674050SBarry Smith MatCheckPreallocated(A,1); 16894e0d8c25SBarry Smith a->roworiented = flg; 169026fbe8dcSKarl Rupp 16914e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16924e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1693e98b92d7SKris Buschelman break; 16944e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1695071fcb05SBarry Smith case MAT_SORTED_FULL: 1696290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1697e98b92d7SKris Buschelman break; 1698e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 16994e0d8c25SBarry Smith a->donotstash = flg; 1700e98b92d7SKris Buschelman break; 1701e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 17024e0d8c25SBarry Smith a->ht_flag = flg; 1703e98b92d7SKris Buschelman break; 17049a4540c5SBarry Smith case MAT_HERMITIAN: 170543674050SBarry Smith MatCheckPreallocated(A,1); 1706e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1707eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 17080f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1709547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 17100f2140c7SStefano Zampini #endif 1711eeffb40dSHong Zhang break; 1712ffa07934SHong Zhang case MAT_SPD: 1713ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1714ffa07934SHong Zhang A->spd = flg; 1715ffa07934SHong Zhang if (flg) { 1716ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1717ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1718ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1719ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1720ffa07934SHong Zhang } 1721ffa07934SHong Zhang break; 172277e54ba9SKris Buschelman case MAT_SYMMETRIC: 172343674050SBarry Smith MatCheckPreallocated(A,1); 1724eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1725eeffb40dSHong Zhang break; 172677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 172743674050SBarry Smith MatCheckPreallocated(A,1); 1728eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1729eeffb40dSHong Zhang break; 17309a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1731e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1732290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 173377e54ba9SKris Buschelman break; 1734d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 17354e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1736d0d4cfc2SHong Zhang break; 1737d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 17384e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1739d0d4cfc2SHong Zhang break; 1740d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 17414e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1742d0d4cfc2SHong Zhang break; 1743e98b92d7SKris Buschelman default: 1744e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1745a30f8f8cSSatish Balay } 1746a30f8f8cSSatish Balay PetscFunctionReturn(0); 1747a30f8f8cSSatish Balay } 1748a30f8f8cSSatish Balay 1749fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1750a30f8f8cSSatish Balay { 1751dfbe8321SBarry Smith PetscErrorCode ierr; 17526e111a19SKarl Rupp 1753a30f8f8cSSatish Balay PetscFunctionBegin; 1754cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1755999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1756cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 1757cf37664fSBarry Smith ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1758fc4dec0aSBarry Smith } 17598115998fSBarry Smith PetscFunctionReturn(0); 1760a30f8f8cSSatish Balay } 1761a30f8f8cSSatish Balay 1762dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1763a30f8f8cSSatish Balay { 1764a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1765a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1766dfbe8321SBarry Smith PetscErrorCode ierr; 17675e90f9d9SHong Zhang PetscInt nv,m,n; 1768ace3abfcSBarry Smith PetscBool flg; 1769a30f8f8cSSatish Balay 1770a30f8f8cSSatish Balay PetscFunctionBegin; 1771a30f8f8cSSatish Balay if (ll != rr) { 1772b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1773e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1774a30f8f8cSSatish Balay } 1775b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1776b3bf805bSHong Zhang 17775e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1778e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1779b3bf805bSHong Zhang 17805e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1781e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 17825e90f9d9SHong Zhang 1783ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17845e90f9d9SHong Zhang 17855e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 17860298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 17875e90f9d9SHong Zhang 17885e90f9d9SHong Zhang /* scale the diagonal part */ 1789a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1790a30f8f8cSSatish Balay 17915e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1792ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17930298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1794a30f8f8cSSatish Balay PetscFunctionReturn(0); 1795a30f8f8cSSatish Balay } 1796a30f8f8cSSatish Balay 1797dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1798a30f8f8cSSatish Balay { 1799f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1800dfbe8321SBarry Smith PetscErrorCode ierr; 1801a30f8f8cSSatish Balay 1802a30f8f8cSSatish Balay PetscFunctionBegin; 1803a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1804a30f8f8cSSatish Balay PetscFunctionReturn(0); 1805a30f8f8cSSatish Balay } 1806a30f8f8cSSatish Balay 18076849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1808a30f8f8cSSatish Balay 1809ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1810a30f8f8cSSatish Balay { 1811a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1812a30f8f8cSSatish Balay Mat a,b,c,d; 1813ace3abfcSBarry Smith PetscBool flg; 1814dfbe8321SBarry Smith PetscErrorCode ierr; 1815a30f8f8cSSatish Balay 1816a30f8f8cSSatish Balay PetscFunctionBegin; 1817a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1818a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1819a30f8f8cSSatish Balay 1820a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1821abc0a331SBarry Smith if (flg) { 1822a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1823a30f8f8cSSatish Balay } 1824b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1825a30f8f8cSSatish Balay PetscFunctionReturn(0); 1826a30f8f8cSSatish Balay } 1827a30f8f8cSSatish Balay 18283c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 18293c896bc6SHong Zhang { 18303c896bc6SHong Zhang PetscErrorCode ierr; 18314c7a3774SStefano Zampini PetscBool isbaij; 18323c896bc6SHong Zhang 18333c896bc6SHong Zhang PetscFunctionBegin; 18344c7a3774SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr); 18354c7a3774SStefano Zampini if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 18363c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18373c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1838d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 18393c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1840d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 18413c896bc6SHong Zhang } else { 18424c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 18434c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 18444c7a3774SStefano Zampini 18453c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18463c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18473c896bc6SHong Zhang } 1848cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 18493c896bc6SHong Zhang PetscFunctionReturn(0); 18503c896bc6SHong Zhang } 18513c896bc6SHong Zhang 18524994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1853273d9f13SBarry Smith { 1854dfbe8321SBarry Smith PetscErrorCode ierr; 1855273d9f13SBarry Smith 1856273d9f13SBarry Smith PetscFunctionBegin; 1857535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1858273d9f13SBarry Smith PetscFunctionReturn(0); 1859273d9f13SBarry Smith } 1860a5e6ed63SBarry Smith 18614fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18624fe895cdSHong Zhang { 18634fe895cdSHong Zhang PetscErrorCode ierr; 18644fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 18654fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18664fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 18674fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 18684fe895cdSHong Zhang 18694fe895cdSHong Zhang PetscFunctionBegin; 18704fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18714fe895cdSHong Zhang PetscScalar alpha = a; 18724fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 18734fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1874c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 18758b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 18764fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 18774fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1878c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 18798b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1880a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1881ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1882ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1883ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1884ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 18854fe895cdSHong Zhang } else { 18864de5dceeSHong Zhang Mat B; 18874de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18884de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1889d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 18904de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 18914de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 18924de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 18934de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 18944de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 18954de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 18964de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 18974de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 18984de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 18994de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 19004de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 19014de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 190228be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 19034de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 19044de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1905d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 19064de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 19074fe895cdSHong Zhang } 19084fe895cdSHong Zhang PetscFunctionReturn(0); 19094fe895cdSHong Zhang } 19104fe895cdSHong Zhang 19117dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1912a5e6ed63SBarry Smith { 19136849ba73SBarry Smith PetscErrorCode ierr; 19141302d50aSBarry Smith PetscInt i; 1915afebec48SHong Zhang PetscBool flg; 1916a5e6ed63SBarry Smith 19176849ba73SBarry Smith PetscFunctionBegin; 19187dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1919a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1920a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1921afebec48SHong Zhang if (!flg) { 1922b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1923a5e6ed63SBarry Smith } 19244dcd73b1SHong Zhang } 1925a5e6ed63SBarry Smith PetscFunctionReturn(0); 1926a5e6ed63SBarry Smith } 1927a5e6ed63SBarry Smith 19287d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 19297d68702bSBarry Smith { 19307d68702bSBarry Smith PetscErrorCode ierr; 19317d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 19326f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 19337d68702bSBarry Smith 19347d68702bSBarry Smith PetscFunctionBegin; 19356f33a894SBarry Smith if (!Y->preallocated) { 19367d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 19376f33a894SBarry Smith } else if (!aij->nz) { 1938b83222d8SBarry Smith PetscInt nonew = aij->nonew; 19396f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1940b83222d8SBarry Smith aij->nonew = nonew; 19417d68702bSBarry Smith } 19427d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 19437d68702bSBarry Smith PetscFunctionReturn(0); 19447d68702bSBarry Smith } 19457d68702bSBarry Smith 19463b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 19473b49f96aSBarry Smith { 19483b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 19493b49f96aSBarry Smith PetscErrorCode ierr; 19503b49f96aSBarry Smith 19513b49f96aSBarry Smith PetscFunctionBegin; 19523b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 19533b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 19543b49f96aSBarry Smith if (d) { 19553b49f96aSBarry Smith PetscInt rstart; 19563b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 19573b49f96aSBarry Smith *d += rstart/A->rmap->bs; 19583b49f96aSBarry Smith 19593b49f96aSBarry Smith } 19603b49f96aSBarry Smith PetscFunctionReturn(0); 19613b49f96aSBarry Smith } 19623b49f96aSBarry Smith 1963a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1964a5b7ff6bSBarry Smith { 1965a5b7ff6bSBarry Smith PetscFunctionBegin; 1966a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1967a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1968a5b7ff6bSBarry Smith } 19693b49f96aSBarry Smith 1970a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 19713964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1972a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1973a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1974a9d4b620SHong Zhang MatMult_MPISBAIJ, 197597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1976431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1977431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1978a30f8f8cSSatish Balay 0, 1979a30f8f8cSSatish Balay 0, 1980a30f8f8cSSatish Balay 0, 198197304618SKris Buschelman /* 10*/ 0, 1982a30f8f8cSSatish Balay 0, 1983a30f8f8cSSatish Balay 0, 198441f059aeSBarry Smith MatSOR_MPISBAIJ, 1985a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 198697304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1987a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1988a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1989a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1990a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 199197304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1992a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1993a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1994a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1995d519adbfSMatthew Knepley /* 24*/ 0, 1996a30f8f8cSSatish Balay 0, 1997a30f8f8cSSatish Balay 0, 1998a30f8f8cSSatish Balay 0, 1999a30f8f8cSSatish Balay 0, 20004994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 2001b5df2d14SHong Zhang 0, 2002a30f8f8cSSatish Balay 0, 2003a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 2004a30f8f8cSSatish Balay 0, 2005d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 2006a30f8f8cSSatish Balay 0, 2007a30f8f8cSSatish Balay 0, 2008a30f8f8cSSatish Balay 0, 2009a30f8f8cSSatish Balay 0, 2010d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 20117dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 2012d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 2013a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 20143c896bc6SHong Zhang MatCopy_MPISBAIJ, 2015d519adbfSMatthew Knepley /* 44*/ 0, 2016a30f8f8cSSatish Balay MatScale_MPISBAIJ, 20177d68702bSBarry Smith MatShift_MPISBAIJ, 2018a30f8f8cSSatish Balay 0, 2019a30f8f8cSSatish Balay 0, 2020f73d5cc4SBarry Smith /* 49*/ 0, 2021a30f8f8cSSatish Balay 0, 2022a30f8f8cSSatish Balay 0, 2023a30f8f8cSSatish Balay 0, 2024a30f8f8cSSatish Balay 0, 2025d519adbfSMatthew Knepley /* 54*/ 0, 2026a30f8f8cSSatish Balay 0, 2027a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 2028a30f8f8cSSatish Balay 0, 2029a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 20307dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 2031a30f8f8cSSatish Balay 0, 2032a30f8f8cSSatish Balay 0, 2033357abbc8SBarry Smith 0, 203424d5174aSHong Zhang 0, 2035d519adbfSMatthew Knepley /* 64*/ 0, 203624d5174aSHong Zhang 0, 203724d5174aSHong Zhang 0, 203824d5174aSHong Zhang 0, 203924d5174aSHong Zhang 0, 2040d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 204124d5174aSHong Zhang 0, 204297304618SKris Buschelman 0, 204397304618SKris Buschelman 0, 204497304618SKris Buschelman 0, 2045d519adbfSMatthew Knepley /* 74*/ 0, 204697304618SKris Buschelman 0, 204797304618SKris Buschelman 0, 204897304618SKris Buschelman 0, 204997304618SKris Buschelman 0, 2050d519adbfSMatthew Knepley /* 79*/ 0, 205197304618SKris Buschelman 0, 205297304618SKris Buschelman 0, 205397304618SKris Buschelman 0, 20545bba2384SShri Abhyankar MatLoad_MPISBAIJ, 2055d519adbfSMatthew Knepley /* 84*/ 0, 2056865e5f61SKris Buschelman 0, 2057865e5f61SKris Buschelman 0, 2058865e5f61SKris Buschelman 0, 2059865e5f61SKris Buschelman 0, 2060d519adbfSMatthew Knepley /* 89*/ 0, 2061865e5f61SKris Buschelman 0, 2062865e5f61SKris Buschelman 0, 2063865e5f61SKris Buschelman 0, 2064865e5f61SKris Buschelman 0, 2065d519adbfSMatthew Knepley /* 94*/ 0, 2066865e5f61SKris Buschelman 0, 2067865e5f61SKris Buschelman 0, 206899cafbc1SBarry Smith 0, 206999cafbc1SBarry Smith 0, 2070d519adbfSMatthew Knepley /* 99*/ 0, 207199cafbc1SBarry Smith 0, 207299cafbc1SBarry Smith 0, 207399cafbc1SBarry Smith 0, 207499cafbc1SBarry Smith 0, 2075d519adbfSMatthew Knepley /*104*/ 0, 207699cafbc1SBarry Smith MatRealPart_MPISBAIJ, 2077d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 2078d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 207995936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 208095936485SShri Abhyankar /*109*/ 0, 208195936485SShri Abhyankar 0, 208295936485SShri Abhyankar 0, 208395936485SShri Abhyankar 0, 20843b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 208595936485SShri Abhyankar /*114*/ 0, 208695936485SShri Abhyankar 0, 208795936485SShri Abhyankar 0, 208895936485SShri Abhyankar 0, 208995936485SShri Abhyankar 0, 209095936485SShri Abhyankar /*119*/ 0, 209195936485SShri Abhyankar 0, 209295936485SShri Abhyankar 0, 20933964eb88SJed Brown 0, 20943964eb88SJed Brown 0, 20953964eb88SJed Brown /*124*/ 0, 20963964eb88SJed Brown 0, 20973964eb88SJed Brown 0, 20983964eb88SJed Brown 0, 20993964eb88SJed Brown 0, 21003964eb88SJed Brown /*129*/ 0, 21013964eb88SJed Brown 0, 21023964eb88SJed Brown 0, 21033964eb88SJed Brown 0, 21043964eb88SJed Brown 0, 21053964eb88SJed Brown /*134*/ 0, 21063964eb88SJed Brown 0, 21073964eb88SJed Brown 0, 21083964eb88SJed Brown 0, 21093964eb88SJed Brown 0, 211046533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2111f9426fe0SMark Adams 0, 211259f5e6ceSHong Zhang 0, 211359f5e6ceSHong Zhang 0, 211459f5e6ceSHong Zhang 0, 211559f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 211699cafbc1SBarry Smith }; 2117a30f8f8cSSatish Balay 2118b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2119a23d5eceSKris Buschelman { 2120a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 2121dfbe8321SBarry Smith PetscErrorCode ierr; 2122535b19f3SBarry Smith PetscInt i,mbs,Mbs; 21235d2a9ed1SStefano Zampini PetscMPIInt size; 2124a23d5eceSKris Buschelman 2125a23d5eceSKris Buschelman PetscFunctionBegin; 212633d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 212726283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 212826283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2129e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2130899cda47SBarry Smith 2131a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 2132d0f46423SBarry Smith mbs = B->rmap->n/bs; 2133d0f46423SBarry Smith Mbs = B->rmap->N/bs; 2134c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 2135a23d5eceSKris Buschelman 2136d0f46423SBarry Smith B->rmap->bs = bs; 2137a23d5eceSKris Buschelman b->bs2 = bs*bs; 2138a23d5eceSKris Buschelman b->mbs = mbs; 2139a23d5eceSKris Buschelman b->Mbs = Mbs; 2140de64b629SHong Zhang b->nbs = B->cmap->n/bs; 2141de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 2142a23d5eceSKris Buschelman 2143a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2144d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2145a23d5eceSKris Buschelman } 2146d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2147d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2148a23d5eceSKris Buschelman 2149d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2150d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2151a23d5eceSKris Buschelman 2152cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2153cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2154cb7b82ddSBarry Smith #else 2155cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2156cb7b82ddSBarry Smith #endif 2157cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2158cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2159cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2160cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 2161cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 2162cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 2163cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 2164cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 2165cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 2166cb7b82ddSBarry Smith 2167cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 21685d2a9ed1SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 2169cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2170cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 21715d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 2172cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2173cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2174cb7b82ddSBarry Smith 2175526dfc15SBarry Smith if (!B->preallocated) { 2176f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2177d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 21789c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 21793bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2180ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2181526dfc15SBarry Smith } 2182a23d5eceSKris Buschelman 2183526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2184526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 218526fbe8dcSKarl Rupp 2186526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2187cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2188cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2189a23d5eceSKris Buschelman PetscFunctionReturn(0); 2190a23d5eceSKris Buschelman } 2191a23d5eceSKris Buschelman 2192dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2193dfb205c3SBarry Smith { 2194dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 2195*0cd7f59aSBarry Smith PetscInt i,j,d,nz,bd, nz_max=0,*d_nnz=0,*o_nnz=0; 2196dfb205c3SBarry Smith const PetscInt *JJ =0; 2197dfb205c3SBarry Smith PetscScalar *values=0; 2198dfb205c3SBarry Smith PetscErrorCode ierr; 2199dfb205c3SBarry Smith 2200dfb205c3SBarry Smith PetscFunctionBegin; 2201ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2202dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2203dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2204dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2205dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2206e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2207dfb205c3SBarry Smith m = B->rmap->n/bs; 2208dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2209dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 2210dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2211dfb205c3SBarry Smith 2212dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2213dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2214dfb205c3SBarry Smith for (i=0; i<m; i++) { 2215dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2216dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2217*0cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2218dfb205c3SBarry Smith JJ = jj + ii[i]; 2219*0cd7f59aSBarry Smith bd = 0; 2220dfb205c3SBarry Smith for (j=0; j<nz; j++) { 2221*0cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2222dfb205c3SBarry Smith JJ++; 2223*0cd7f59aSBarry Smith bd++; 2224dfb205c3SBarry Smith } 2225dfb205c3SBarry Smith d = 0; 2226dfb205c3SBarry Smith for (; j<nz; j++) { 2227dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2228dfb205c3SBarry Smith d++; 2229dfb205c3SBarry Smith } 2230dfb205c3SBarry Smith d_nnz[i] = d; 2231*0cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 2232*0cd7f59aSBarry Smith nz = nz - bd; 2233*0cd7f59aSBarry Smith nz_max = PetscMax(nz_max,nz); 2234dfb205c3SBarry Smith } 2235dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2236dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2237dfb205c3SBarry Smith 2238dfb205c3SBarry Smith values = (PetscScalar*)V; 2239dfb205c3SBarry Smith if (!values) { 2240580bdb30SBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2241dfb205c3SBarry Smith } 2242dfb205c3SBarry Smith for (i=0; i<m; i++) { 2243dfb205c3SBarry Smith PetscInt row = i + rstart; 2244dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2245dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2246dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2247*0cd7f59aSBarry Smith if (bs == 1) { 2248dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2249*0cd7f59aSBarry Smith } else { 2250*0cd7f59aSBarry Smith for (j=0; j<ncols; j++) { 2251*0cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 2252*0cd7f59aSBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 2253*0cd7f59aSBarry Smith } 2254*0cd7f59aSBarry Smith } 2255dfb205c3SBarry Smith } 2256dfb205c3SBarry Smith 2257dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2258dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2259dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 22607827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2261dfb205c3SBarry Smith PetscFunctionReturn(0); 2262dfb205c3SBarry Smith } 2263dfb205c3SBarry Smith 22640bad9183SKris Buschelman /*MC 2265fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2266828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2267828413b8SBarry Smith the matrix is stored. 2268828413b8SBarry Smith 2269828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2270828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 22710bad9183SKris Buschelman 22720bad9183SKris Buschelman Options Database Keys: 22730bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 22740bad9183SKris Buschelman 22750bad9183SKris Buschelman Level: beginner 22760bad9183SKris Buschelman 22770bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 22780bad9183SKris Buschelman M*/ 22790bad9183SKris Buschelman 22808cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2281b5df2d14SHong Zhang { 2282b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2283dfbe8321SBarry Smith PetscErrorCode ierr; 228494ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2285b5df2d14SHong Zhang 2286b5df2d14SHong Zhang PetscFunctionBegin; 2287b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2288b0a32e0cSBarry Smith B->data = (void*)b; 2289b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2290b5df2d14SHong Zhang 2291b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2292b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2293b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2294b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 229526fbe8dcSKarl Rupp 2296ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2297ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2298b5df2d14SHong Zhang 2299b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2300854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2301b5df2d14SHong Zhang 2302b5df2d14SHong Zhang /* build cache for off array entries formed */ 2303ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 230426fbe8dcSKarl Rupp 2305b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 23060298fd71SBarry Smith b->colmap = NULL; 23070298fd71SBarry Smith b->garray = NULL; 2308b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2309b5df2d14SHong Zhang 2310b5df2d14SHong Zhang /* stuff used in block assembly */ 2311b5df2d14SHong Zhang b->barray = 0; 2312b5df2d14SHong Zhang 2313b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2314b5df2d14SHong Zhang b->lvec = 0; 2315b5df2d14SHong Zhang b->Mvctx = 0; 231640781036SHong Zhang b->slvec0 = 0; 231740781036SHong Zhang b->slvec0b = 0; 231840781036SHong Zhang b->slvec1 = 0; 231940781036SHong Zhang b->slvec1a = 0; 232040781036SHong Zhang b->slvec1b = 0; 232140781036SHong Zhang b->sMvctx = 0; 2322b5df2d14SHong Zhang 2323b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2324b5df2d14SHong Zhang b->rowindices = 0; 2325b5df2d14SHong Zhang b->rowvalues = 0; 2326b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2327b5df2d14SHong Zhang 2328b5df2d14SHong Zhang /* hash table stuff */ 2329b5df2d14SHong Zhang b->ht = 0; 2330b5df2d14SHong Zhang b->hd = 0; 2331b5df2d14SHong Zhang b->ht_size = 0; 2332b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2333b5df2d14SHong Zhang b->ht_fact = 0; 2334b5df2d14SHong Zhang b->ht_total_ct = 0; 2335b5df2d14SHong Zhang b->ht_insert_ct = 0; 2336b5df2d14SHong Zhang 23377dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 23387a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 23397a868f3eSHong Zhang 234059ffdab8SBarry Smith b->in_loc = 0; 234159ffdab8SBarry Smith b->v_loc = 0; 234259ffdab8SBarry Smith b->n_loc = 0; 234394ae4db5SBarry Smith 2344bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2345bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2346bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2347bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 23486214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 23496214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 23506214f412SHong Zhang #endif 2351b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_XAIJ);CHKERRQ(ierr); 2352b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_XAIJ);CHKERRQ(ierr); 2353aa5a9175SDahai Guo 235423ce1328SBarry Smith B->symmetric = PETSC_TRUE; 235523ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 235623ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 235723ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 23589899f194SHong Zhang B->symmetric_eternal = PETSC_TRUE; 235926fbe8dcSKarl Rupp 236013647f61SHong Zhang B->hermitian = PETSC_FALSE; 236113647f61SHong Zhang B->hermitian_set = PETSC_FALSE; 236213647f61SHong Zhang 236317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 236494ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 236594ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 236694ae4db5SBarry Smith if (flg) { 236794ae4db5SBarry Smith PetscReal fact = 1.39; 236894ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 236994ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 237094ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 237194ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 237294ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 237394ae4db5SBarry Smith } 237494ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2375b5df2d14SHong Zhang PetscFunctionReturn(0); 2376b5df2d14SHong Zhang } 2377b5df2d14SHong Zhang 2378209238afSKris Buschelman /*MC 2379002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2380209238afSKris Buschelman 2381209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2382209238afSKris Buschelman and MATMPISBAIJ otherwise. 2383209238afSKris Buschelman 2384209238afSKris Buschelman Options Database Keys: 2385209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2386209238afSKris Buschelman 2387209238afSKris Buschelman Level: beginner 2388209238afSKris Buschelman 2389209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2390209238afSKris Buschelman M*/ 2391209238afSKris Buschelman 2392b5df2d14SHong Zhang /*@C 2393b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2394b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2395b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2396b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2397b5df2d14SHong Zhang 2398b5df2d14SHong Zhang Collective on Mat 2399b5df2d14SHong Zhang 2400b5df2d14SHong Zhang Input Parameters: 24011c4f3114SJed Brown + B - the matrix 2402bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2403bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2404b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2405b5df2d14SHong Zhang submatrix (same for all local rows) 2406b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 24076d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 24080298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 240995742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2410b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2411b5df2d14SHong Zhang submatrix (same for all local rows). 2412b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2413c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 24140298fd71SBarry Smith (possibly different for each block row) or NULL. 2415b5df2d14SHong Zhang 2416b5df2d14SHong Zhang 2417b5df2d14SHong Zhang Options Database Keys: 2418a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2419b5df2d14SHong Zhang block calculations (much slower) 2420a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2421b5df2d14SHong Zhang 2422b5df2d14SHong Zhang Notes: 2423b5df2d14SHong Zhang 2424b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2425b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2426b5df2d14SHong Zhang 242749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 242849a6f317SBarry Smith 2429b5df2d14SHong Zhang Storage Information: 2430b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2431b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2432b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2433b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2434b5df2d14SHong Zhang 2435b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2436b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 24370298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2438b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2439b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2440b5df2d14SHong Zhang 2441aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2442aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2443aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2444aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2445aa95bbe8SBarry Smith 2446b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2447b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2448b5df2d14SHong Zhang 2449b5df2d14SHong Zhang .vb 2450b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2451a4b1a0f6SJed Brown -------------------------- 2452c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2453c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2454c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2455a4b1a0f6SJed Brown -------------------------- 2456b5df2d14SHong Zhang .ve 2457b5df2d14SHong Zhang 2458b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2459b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 24606d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24616d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2462b5df2d14SHong Zhang 24636d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 24646d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2465c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2466c2fc9fa9SBarry Smith 2467b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2468b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2469b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2470b5df2d14SHong Zhang matrices. 2471b5df2d14SHong Zhang 2472b5df2d14SHong Zhang Level: intermediate 2473b5df2d14SHong Zhang 2474ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2475b5df2d14SHong Zhang @*/ 24767087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2477b5df2d14SHong Zhang { 24784ac538c5SBarry Smith PetscErrorCode ierr; 2479b5df2d14SHong Zhang 2480b5df2d14SHong Zhang PetscFunctionBegin; 24816ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 24826ba663aaSJed Brown PetscValidType(B,1); 24836ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 24844ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2485b5df2d14SHong Zhang PetscFunctionReturn(0); 2486b5df2d14SHong Zhang } 2487b5df2d14SHong Zhang 2488a30f8f8cSSatish Balay /*@C 248969b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2490a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2491a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2492a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2493a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2494a30f8f8cSSatish Balay 2495d083f849SBarry Smith Collective 2496a30f8f8cSSatish Balay 2497a30f8f8cSSatish Balay Input Parameters: 2498a30f8f8cSSatish Balay + comm - MPI communicator 2499bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2500bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2501a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2502a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2503a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2504a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2505a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2506a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2507a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2508a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2509a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2510a30f8f8cSSatish Balay submatrix (same for all local rows) 2511a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 25126d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 25130298fd71SBarry Smith (possibly different for each block block row) or NULL. 251495742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 251595742e49SBarry Smith set its value even if it is zero. 2516a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2517a30f8f8cSSatish Balay submatrix (same for all local rows). 2518a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2519a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 25200298fd71SBarry Smith each block row) or NULL. 2521a30f8f8cSSatish Balay 2522a30f8f8cSSatish Balay Output Parameter: 2523a30f8f8cSSatish Balay . A - the matrix 2524a30f8f8cSSatish Balay 2525a30f8f8cSSatish Balay Options Database Keys: 2526a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2527a30f8f8cSSatish Balay block calculations (much slower) 2528a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2529a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2530a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2531a30f8f8cSSatish Balay 2532175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2533f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2534175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2535175b88e8SBarry Smith 2536a30f8f8cSSatish Balay Notes: 2537d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 25386d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2539d1be2dadSMatthew Knepley 2540a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2541a30f8f8cSSatish Balay (possibly both). 2542a30f8f8cSSatish Balay 2543a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2544a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2545a30f8f8cSSatish Balay 254649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 254749a6f317SBarry Smith 2548a30f8f8cSSatish Balay Storage Information: 2549a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2550a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2551a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2552a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2553a30f8f8cSSatish Balay 2554a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2555a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 25560298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2557a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2558a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2559a30f8f8cSSatish Balay 2560a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2561a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2562a30f8f8cSSatish Balay 2563a30f8f8cSSatish Balay .vb 2564a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2565a4b1a0f6SJed Brown -------------------------- 2566c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2567c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2568c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2569a4b1a0f6SJed Brown -------------------------- 2570a30f8f8cSSatish Balay .ve 2571a30f8f8cSSatish Balay 2572a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2573a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 25746d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 25756d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2576a30f8f8cSSatish Balay 25776d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 25786d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2579a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2580a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2581a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2582a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2583a30f8f8cSSatish Balay matrices. 2584a30f8f8cSSatish Balay 2585a30f8f8cSSatish Balay Level: intermediate 2586a30f8f8cSSatish Balay 258769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2588a30f8f8cSSatish Balay @*/ 2589a30f8f8cSSatish Balay 259069b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2591a30f8f8cSSatish Balay { 25926849ba73SBarry Smith PetscErrorCode ierr; 25931302d50aSBarry Smith PetscMPIInt size; 2594a30f8f8cSSatish Balay 2595a30f8f8cSSatish Balay PetscFunctionBegin; 2596f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2597f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2598273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2599273d9f13SBarry Smith if (size > 1) { 2600b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2601b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2602273d9f13SBarry Smith } else { 2603273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2604273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2605273d9f13SBarry Smith } 2606a30f8f8cSSatish Balay PetscFunctionReturn(0); 2607a30f8f8cSSatish Balay } 2608a30f8f8cSSatish Balay 2609a30f8f8cSSatish Balay 26106849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2611a30f8f8cSSatish Balay { 2612a30f8f8cSSatish Balay Mat mat; 2613a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2614dfbe8321SBarry Smith PetscErrorCode ierr; 2615d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2616387bc808SHong Zhang PetscScalar *array; 2617a30f8f8cSSatish Balay 2618a30f8f8cSSatish Balay PetscFunctionBegin; 2619a30f8f8cSSatish Balay *newmat = 0; 262026fbe8dcSKarl Rupp 2621ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2622d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 26237adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 26241e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 26251e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2626e1b6402fSHong Zhang 2627d5f3da31SBarry Smith mat->factortype = matin->factortype; 2628273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 262982327fa8SHong Zhang mat->assembled = PETSC_TRUE; 26307fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 26317fff6886SHong Zhang 2632b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2633a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2634a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2635a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2636a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2637a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2638a30f8f8cSSatish Balay 2639a30f8f8cSSatish Balay a->size = oldmat->size; 2640a30f8f8cSSatish Balay a->rank = oldmat->rank; 2641a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2642a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2643a30f8f8cSSatish Balay a->rowindices = 0; 2644a30f8f8cSSatish Balay a->rowvalues = 0; 2645a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2646a30f8f8cSSatish Balay a->barray = 0; 2647899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2648899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2649899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2650899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2651a30f8f8cSSatish Balay 2652a30f8f8cSSatish Balay /* hash table stuff */ 2653a30f8f8cSSatish Balay a->ht = 0; 2654a30f8f8cSSatish Balay a->hd = 0; 2655a30f8f8cSSatish Balay a->ht_size = 0; 2656a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2657a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2658a30f8f8cSSatish Balay a->ht_total_ct = 0; 2659a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2660a30f8f8cSSatish Balay 2661580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr); 2662a30f8f8cSSatish Balay if (oldmat->colmap) { 2663a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2664a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2665a30f8f8cSSatish Balay #else 2666854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 26673bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2668580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 2669a30f8f8cSSatish Balay #endif 2670a30f8f8cSSatish Balay } else a->colmap = 0; 2671387bc808SHong Zhang 2672a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2673785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 26743bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2675580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 2676a30f8f8cSSatish Balay } else a->garray = 0; 2677a30f8f8cSSatish Balay 2678ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2679a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 26803bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2681a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 26823bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 268382327fa8SHong Zhang 268482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 26853bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 268682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 26873bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2688387bc808SHong Zhang 2689387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 26901ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2691778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2692778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 26931ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 26941ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2695778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 26961ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 26973bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 26983bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 26993bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 27003bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 27013bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2702387bc808SHong Zhang 2703387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2704387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2705387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 27063bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 270782327fa8SHong Zhang 2708a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 27093bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2710a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 27113bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2712140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2713a30f8f8cSSatish Balay *newmat = mat; 2714a30f8f8cSSatish Balay PetscFunctionReturn(0); 2715a30f8f8cSSatish Balay } 2716a30f8f8cSSatish Balay 2717112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 271895936485SShri Abhyankar { 271995936485SShri Abhyankar PetscErrorCode ierr; 272095936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 272195936485SShri Abhyankar PetscScalar *vals,*buf; 2722ce94432eSBarry Smith MPI_Comm comm; 272395936485SShri Abhyankar MPI_Status status; 2724adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2725adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 272695936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 27273059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 272895936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2729461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 273095936485SShri Abhyankar int fd; 27317f489da9SVaclav Hapla PetscBool isbinary; 273295936485SShri Abhyankar 273395936485SShri Abhyankar PetscFunctionBegin; 27347f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 27357f489da9SVaclav Hapla if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name); 27367f489da9SVaclav Hapla 2737c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2738c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2739ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 27400298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 27410298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 274295936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 27433059b6faSBarry Smith if (bs < 0) bs = 1; 274495936485SShri Abhyankar 274595936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 274695936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 274795936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 27485872f025SBarry Smith if (!rank) { 27499860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,(char*)header,4,NULL,PETSC_INT);CHKERRQ(ierr); 275095936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 275102f61395SBarry Smith if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 275295936485SShri Abhyankar } 275395936485SShri Abhyankar 275495936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 275526fbe8dcSKarl Rupp M = header[1]; 275626fbe8dcSKarl Rupp N = header[2]; 275795936485SShri Abhyankar 275895936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2759461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2760461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 276195936485SShri Abhyankar 276295936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 276395936485SShri Abhyankar 276495936485SShri Abhyankar /* 276595936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 276695936485SShri Abhyankar divisible by the blocksize 276795936485SShri Abhyankar */ 276895936485SShri Abhyankar Mbs = M/bs; 276995936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 277095936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 277195936485SShri Abhyankar else Mbs++; 277295936485SShri Abhyankar if (extra_rows &&!rank) { 277395936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 277495936485SShri Abhyankar } 277595936485SShri Abhyankar 277695936485SShri Abhyankar /* determine ownership of all rows */ 277795936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 277895936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 277995936485SShri Abhyankar m = mbs*bs; 278095936485SShri Abhyankar } else { /* User Set */ 278195936485SShri Abhyankar m = newmat->rmap->n; 278295936485SShri Abhyankar mbs = m/bs; 278395936485SShri Abhyankar } 2784dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 27854dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 278695936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 278795936485SShri Abhyankar rowners[0] = 0; 278895936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 278995936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 279095936485SShri Abhyankar rstart = rowners[rank]; 279195936485SShri Abhyankar rend = rowners[rank+1]; 279295936485SShri Abhyankar 279395936485SShri Abhyankar /* distribute row lengths to all processors */ 2794785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 279595936485SShri Abhyankar if (!rank) { 2796854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 27979860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,rowlengths,M,NULL,PETSC_INT);CHKERRQ(ierr); 279895936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2799785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 280095936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 280195936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 280295936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 280395936485SShri Abhyankar } else { 280495936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 280595936485SShri Abhyankar } 280695936485SShri Abhyankar 280795936485SShri Abhyankar if (!rank) { /* procs[0] */ 280895936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2809580bdb30SBarry Smith ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr); 281095936485SShri Abhyankar for (i=0; i<size; i++) { 281195936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 281295936485SShri Abhyankar procsnz[i] += rowlengths[j]; 281395936485SShri Abhyankar } 281495936485SShri Abhyankar } 281595936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 281695936485SShri Abhyankar 281795936485SShri Abhyankar /* determine max buffer needed and allocate it */ 281895936485SShri Abhyankar maxnz = 0; 281995936485SShri Abhyankar for (i=0; i<size; i++) { 282095936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 282195936485SShri Abhyankar } 2822785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 282395936485SShri Abhyankar 282495936485SShri Abhyankar /* read in my part of the matrix column indices */ 282595936485SShri Abhyankar nz = procsnz[0]; 2826785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 282795936485SShri Abhyankar mycols = ibuf; 282895936485SShri Abhyankar if (size == 1) nz -= extra_rows; 28299860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,mycols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 283026fbe8dcSKarl Rupp if (size == 1) { 283126fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 283226fbe8dcSKarl Rupp } 283395936485SShri Abhyankar 283495936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 283595936485SShri Abhyankar for (i=1; i<size-1; i++) { 283695936485SShri Abhyankar nz = procsnz[i]; 28379860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 283895936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 283995936485SShri Abhyankar } 284095936485SShri Abhyankar /* read in the stuff for the last proc */ 284195936485SShri Abhyankar if (size != 1) { 284295936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 28439860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 284495936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 284595936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 284695936485SShri Abhyankar } 284795936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 284895936485SShri Abhyankar } else { /* procs[i], i>0 */ 284995936485SShri Abhyankar /* determine buffer space needed for message */ 285095936485SShri Abhyankar nz = 0; 285126fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2852785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 285395936485SShri Abhyankar mycols = ibuf; 285495936485SShri Abhyankar /* receive message of column indices*/ 285595936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 285695936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 285795936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 285895936485SShri Abhyankar } 285995936485SShri Abhyankar 286095936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2861dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2862580bdb30SBarry Smith ierr = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 286395936485SShri Abhyankar rowcount = 0; 286495936485SShri Abhyankar nzcount = 0; 286595936485SShri Abhyankar for (i=0; i<mbs; i++) { 286695936485SShri Abhyankar dcount = 0; 286795936485SShri Abhyankar odcount = 0; 286895936485SShri Abhyankar for (j=0; j<bs; j++) { 286995936485SShri Abhyankar kmax = locrowlens[rowcount]; 287095936485SShri Abhyankar for (k=0; k<kmax; k++) { 287195936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 287295936485SShri Abhyankar if (!mask[tmp]) { 287395936485SShri Abhyankar mask[tmp] = 1; 287495936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 287595936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 287695936485SShri Abhyankar } 287795936485SShri Abhyankar } 287895936485SShri Abhyankar rowcount++; 287995936485SShri Abhyankar } 288095936485SShri Abhyankar 288195936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 288295936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 288395936485SShri Abhyankar 288495936485SShri Abhyankar /* zero out the mask elements we set */ 288595936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 288695936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 288795936485SShri Abhyankar } 288895936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 288995936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 28906816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 289195936485SShri Abhyankar 289295936485SShri Abhyankar if (!rank) { 2893785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 289495936485SShri Abhyankar /* read in my part of the matrix numerical values */ 289595936485SShri Abhyankar nz = procsnz[0]; 289695936485SShri Abhyankar vals = buf; 289795936485SShri Abhyankar mycols = ibuf; 289895936485SShri Abhyankar if (size == 1) nz -= extra_rows; 28999860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 290026fbe8dcSKarl Rupp if (size == 1) { 290126fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 290226fbe8dcSKarl Rupp } 290395936485SShri Abhyankar 290495936485SShri Abhyankar /* insert into matrix */ 290595936485SShri Abhyankar jj = rstart*bs; 290695936485SShri Abhyankar for (i=0; i<m; i++) { 290795936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 290895936485SShri Abhyankar mycols += locrowlens[i]; 290995936485SShri Abhyankar vals += locrowlens[i]; 291095936485SShri Abhyankar jj++; 291195936485SShri Abhyankar } 291295936485SShri Abhyankar 291395936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 291495936485SShri Abhyankar for (i=1; i<size-1; i++) { 291595936485SShri Abhyankar nz = procsnz[i]; 291695936485SShri Abhyankar vals = buf; 29179860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 291895936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 291995936485SShri Abhyankar } 292095936485SShri Abhyankar /* the last proc */ 292195936485SShri Abhyankar if (size != 1) { 292295936485SShri Abhyankar nz = procsnz[i] - extra_rows; 292395936485SShri Abhyankar vals = buf; 29249860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 292595936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 292695936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 292795936485SShri Abhyankar } 292895936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 292995936485SShri Abhyankar 293095936485SShri Abhyankar } else { 293195936485SShri Abhyankar /* receive numeric values */ 2932785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 293395936485SShri Abhyankar 293495936485SShri Abhyankar /* receive message of values*/ 293595936485SShri Abhyankar vals = buf; 293695936485SShri Abhyankar mycols = ibuf; 293795936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 293895936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 293995936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 294095936485SShri Abhyankar 294195936485SShri Abhyankar /* insert into matrix */ 294295936485SShri Abhyankar jj = rstart*bs; 294395936485SShri Abhyankar for (i=0; i<m; i++) { 294495936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 294595936485SShri Abhyankar mycols += locrowlens[i]; 294695936485SShri Abhyankar vals += locrowlens[i]; 294795936485SShri Abhyankar jj++; 294895936485SShri Abhyankar } 294995936485SShri Abhyankar } 295095936485SShri Abhyankar 295195936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 295295936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 295395936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 295495936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 295595936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 295695936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 295795936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 295895936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 295995936485SShri Abhyankar PetscFunctionReturn(0); 296095936485SShri Abhyankar } 296195936485SShri Abhyankar 2962dcf5cc72SBarry Smith /*XXXXX@ 2963a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2964a30f8f8cSSatish Balay 2965a30f8f8cSSatish Balay Input Parameters: 2966a30f8f8cSSatish Balay . mat - the matrix 2967a30f8f8cSSatish Balay . fact - factor 2968a30f8f8cSSatish Balay 2969c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2970a30f8f8cSSatish Balay 2971a30f8f8cSSatish Balay Level: advanced 2972a30f8f8cSSatish Balay 2973a30f8f8cSSatish Balay Notes: 2974a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2975a30f8f8cSSatish Balay 2976a30f8f8cSSatish Balay .seealso: MatSetOption() 2977dcf5cc72SBarry Smith @XXXXX*/ 2978dcf5cc72SBarry Smith 297924d5174aSHong Zhang 2980985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 298124d5174aSHong Zhang { 298224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2983f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2984ca54ac64SHong Zhang PetscReal atmp; 298587828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2986dfbe8321SBarry Smith PetscErrorCode ierr; 29871302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 29881302d50aSBarry Smith PetscMPIInt rank,size; 29891302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 299087828ca2SBarry Smith PetscScalar *va; 29918a1c53f2SBarry Smith MatScalar *ba; 2992f4c0e9e4SHong Zhang MPI_Status stat; 299324d5174aSHong Zhang 299424d5174aSHong Zhang PetscFunctionBegin; 2995e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 29960298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 29971ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2998f4c0e9e4SHong Zhang 2999ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 3000ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 3001f4c0e9e4SHong Zhang 3002d0f46423SBarry Smith bs = A->rmap->bs; 3003f4c0e9e4SHong Zhang mbs = a->mbs; 3004f4c0e9e4SHong Zhang Mbs = a->Mbs; 3005f4c0e9e4SHong Zhang ba = b->a; 3006f4c0e9e4SHong Zhang bi = b->i; 3007f4c0e9e4SHong Zhang bj = b->j; 3008f4c0e9e4SHong Zhang 3009f4c0e9e4SHong Zhang /* find ownerships */ 3010d0f46423SBarry Smith rowners_bs = A->rmap->range; 3011f4c0e9e4SHong Zhang 3012f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 3013580bdb30SBarry Smith ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr); 3014f4c0e9e4SHong Zhang 3015f4c0e9e4SHong Zhang /* row_max for B */ 3016b8475685SHong Zhang if (rank != size-1) { 3017f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 3018f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 3019f4c0e9e4SHong Zhang brow = bs*i; 3020f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 3021f4c0e9e4SHong Zhang bcol = bs*(*bj); 3022f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 3023ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 302404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 3025f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 3026f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 3027ca54ac64SHong Zhang row = brow + krow; /* local row index */ 3028ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 3029f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 3030f4c0e9e4SHong Zhang } 3031f4c0e9e4SHong Zhang } 3032f4c0e9e4SHong Zhang bj++; 3033f4c0e9e4SHong Zhang } 3034f4c0e9e4SHong Zhang } 3035f4c0e9e4SHong Zhang 3036f4c0e9e4SHong Zhang /* send values to its owners */ 3037f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 3038f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 3039ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 3040ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 3041ca54ac64SHong Zhang } 3042f4c0e9e4SHong Zhang } 3043f4c0e9e4SHong Zhang 3044f4c0e9e4SHong Zhang /* receive values */ 3045ca54ac64SHong Zhang if (rank) { 3046f4c0e9e4SHong Zhang rvalues = work; 3047ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 3048f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 3049ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 3050f4c0e9e4SHong Zhang /* process values */ 3051f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 3052ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 3053f4c0e9e4SHong Zhang } 3054f4c0e9e4SHong Zhang } 3055ca54ac64SHong Zhang } 3056f4c0e9e4SHong Zhang 30571ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 3058ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 305924d5174aSHong Zhang PetscFunctionReturn(0); 306024d5174aSHong Zhang } 30612798e883SHong Zhang 306241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 30632798e883SHong Zhang { 30642798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3065dfbe8321SBarry Smith PetscErrorCode ierr; 3066d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 30673649974fSBarry Smith PetscScalar *x,*ptr,*from; 3068ffe4fb16SHong Zhang Vec bb1; 30693649974fSBarry Smith const PetscScalar *b; 3070ffe4fb16SHong Zhang 3071ffe4fb16SHong Zhang PetscFunctionBegin; 3072e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3073e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 3074ffe4fb16SHong Zhang 3075a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 307641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3077a2b30743SBarry Smith PetscFunctionReturn(0); 3078a2b30743SBarry Smith } 3079a2b30743SBarry Smith 3080ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 3081ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 308241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 3083ffe4fb16SHong Zhang its--; 3084ffe4fb16SHong Zhang } 3085ffe4fb16SHong Zhang 3086ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 3087ffe4fb16SHong Zhang while (its--) { 3088ffe4fb16SHong Zhang 3089ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 3090ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3091ffe4fb16SHong Zhang 3092ffe4fb16SHong Zhang /* copy xx into slvec0a */ 30931ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 30941ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3095580bdb30SBarry Smith ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr); 30961ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 3097ffe4fb16SHong Zhang 3098efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 3099ffe4fb16SHong Zhang 3100ffe4fb16SHong Zhang /* copy bb into slvec1a */ 31011ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 31023649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 3103580bdb30SBarry Smith ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr); 31041ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 3105ffe4fb16SHong Zhang 3106ffe4fb16SHong Zhang /* set slvec1b = 0 */ 3107fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3108ffe4fb16SHong Zhang 3109ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 31101ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3111a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 3112ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3113ffe4fb16SHong Zhang 3114ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 3115ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 3116ffe4fb16SHong Zhang 3117ffe4fb16SHong Zhang /* local diagonal sweep */ 311841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 3119ffe4fb16SHong Zhang } 31206bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 3121fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 312241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3123fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 312441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3125fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 3126fa22f6d0SBarry Smith Vec xx1; 3127ace3abfcSBarry Smith PetscBool hasop; 312820f1ed55SBarry Smith const PetscScalar *diag; 3129887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 313020f1ed55SBarry Smith PetscInt i,n; 3131fa22f6d0SBarry Smith 3132fa22f6d0SBarry Smith if (!mat->xx1) { 3133fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 3134fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 3135fa22f6d0SBarry Smith } 3136fa22f6d0SBarry Smith xx1 = mat->xx1; 3137fa22f6d0SBarry Smith bb1 = mat->bb1; 3138fa22f6d0SBarry Smith 313941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 3140fa22f6d0SBarry Smith 3141fa22f6d0SBarry Smith if (!mat->diag) { 3142effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 31432a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 3144fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 3145fa22f6d0SBarry Smith } 3146fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 3147fa22f6d0SBarry Smith 3148fa22f6d0SBarry Smith if (hasop) { 3149fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 3150887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 315120f1ed55SBarry Smith } else { 315220f1ed55SBarry Smith /* 315320f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 315420f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 3155887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 315620f1ed55SBarry Smith */ 315720f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 31583649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 31593649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 316020f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 316120f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 3162887ee2caSBarry Smith if (omega == 1.0) { 316326fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 316420f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 3165887ee2caSBarry Smith } else { 316626fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 3167887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 3168887ee2caSBarry Smith } 316920f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 31703649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 31713649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 317220f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 317320f1ed55SBarry Smith } 3174fa22f6d0SBarry Smith 3175fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 3176fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3177fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3178fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 3179fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3180580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 3181fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 3182fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3183fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3184fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3185effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 3186fa22f6d0SBarry Smith 3187fa22f6d0SBarry Smith /* local sweep */ 318841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 3189fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 3190f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 3191ffe4fb16SHong Zhang PetscFunctionReturn(0); 3192ffe4fb16SHong Zhang } 3193ffe4fb16SHong Zhang 319441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 3195ffe4fb16SHong Zhang { 3196ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3197dfbe8321SBarry Smith PetscErrorCode ierr; 31982798e883SHong Zhang Vec lvec1,bb1; 31992798e883SHong Zhang 32002798e883SHong Zhang PetscFunctionBegin; 3201e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3202e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 32032798e883SHong Zhang 3204c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 32052798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 320641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 32072798e883SHong Zhang its--; 32082798e883SHong Zhang } 32092798e883SHong Zhang 32102798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 32112798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 32122798e883SHong Zhang while (its--) { 3213ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32142798e883SHong Zhang 32152798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 32162798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3217efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 32182798e883SHong Zhang 3219ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32202798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3221ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 32222798e883SHong Zhang 32232798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3224efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 32252798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 32262798e883SHong Zhang 3227ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 32282798e883SHong Zhang 3229c14dc6b6SHong Zhang /* diagonal sweep */ 323041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 32312798e883SHong Zhang } 32326bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 32336bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 32346bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 32352798e883SHong Zhang PetscFunctionReturn(0); 32362798e883SHong Zhang } 32372798e883SHong Zhang 3238dfb205c3SBarry Smith /*@ 3239dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3240dfb205c3SBarry Smith CSR format the local rows. 3241dfb205c3SBarry Smith 3242d083f849SBarry Smith Collective 3243dfb205c3SBarry Smith 3244dfb205c3SBarry Smith Input Parameters: 3245dfb205c3SBarry Smith + comm - MPI communicator 3246dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3247dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3248dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3249dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3250dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3251dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3252dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3253483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 3254dfb205c3SBarry Smith . j - column indices 3255dfb205c3SBarry Smith - a - matrix values 3256dfb205c3SBarry Smith 3257dfb205c3SBarry Smith Output Parameter: 3258dfb205c3SBarry Smith . mat - the matrix 3259dfb205c3SBarry Smith 3260dfb205c3SBarry Smith Level: intermediate 3261dfb205c3SBarry Smith 3262dfb205c3SBarry Smith Notes: 3263dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3264dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3265dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3266dfb205c3SBarry Smith 3267dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3268dfb205c3SBarry Smith 3269dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 327069b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3271dfb205c3SBarry Smith @*/ 32727087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3273dfb205c3SBarry Smith { 3274dfb205c3SBarry Smith PetscErrorCode ierr; 3275dfb205c3SBarry Smith 3276dfb205c3SBarry Smith 3277dfb205c3SBarry Smith PetscFunctionBegin; 3278f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3279dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3280dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3281dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3282dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3283dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3284dfb205c3SBarry Smith PetscFunctionReturn(0); 3285dfb205c3SBarry Smith } 3286dfb205c3SBarry Smith 3287dfb205c3SBarry Smith 3288dfb205c3SBarry Smith /*@C 3289664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 3290dfb205c3SBarry Smith 3291d083f849SBarry Smith Collective 3292dfb205c3SBarry Smith 3293dfb205c3SBarry Smith Input Parameters: 32941c4f3114SJed Brown + B - the matrix 3295dfb205c3SBarry Smith . bs - the block size 3296dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3297dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3298dfb205c3SBarry Smith - v - optional values in the matrix 3299dfb205c3SBarry Smith 3300664954b6SBarry Smith Level: advanced 3301664954b6SBarry Smith 3302664954b6SBarry Smith Notes: 3303*0cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 3304*0cd7f59aSBarry Smith and usually the numerical values as well 3305*0cd7f59aSBarry Smith 3306*0cd7f59aSBarry Smith Any entries below the diagaonl in are ignored 3307dfb205c3SBarry Smith 330869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3309dfb205c3SBarry Smith @*/ 33107087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3311dfb205c3SBarry Smith { 33124ac538c5SBarry Smith PetscErrorCode ierr; 3313dfb205c3SBarry Smith 3314dfb205c3SBarry Smith PetscFunctionBegin; 33154ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3316dfb205c3SBarry Smith PetscFunctionReturn(0); 3317dfb205c3SBarry Smith } 3318dfb205c3SBarry Smith 331910c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 33204dcd73b1SHong Zhang { 33214dcd73b1SHong Zhang PetscErrorCode ierr; 332210c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 332310c56fdeSHong Zhang PetscInt *indx; 332410c56fdeSHong Zhang PetscScalar *values; 3325dfb205c3SBarry Smith 33264dcd73b1SHong Zhang PetscFunctionBegin; 33274dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 332810c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 332910c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 333010c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 333110c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 33324dcd73b1SHong Zhang 333310c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 333410c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 333510c56fdeSHong Zhang if (n == PETSC_DECIDE) { 333610c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 333710c56fdeSHong Zhang } 3338e86611e7SPierre Jolivet /* Check sum(n) = N */ 3339b2566f29SBarry Smith ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 3340e86611e7SPierre Jolivet if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 334110c56fdeSHong Zhang 334210c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 334310c56fdeSHong Zhang rstart -= mbs; 33444dcd73b1SHong Zhang 33454dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 334610c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 3347e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 334810c56fdeSHong Zhang for (i=0; i<mbs; i++) { 33494dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 33504dcd73b1SHong Zhang nnz = nnz/bs; 33514dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 33524dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 33534dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 33544dcd73b1SHong Zhang } 3355e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 33564dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 33574dcd73b1SHong Zhang 33584dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 335910c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 33604dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 3361ce94fc41SPierre Jolivet ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr); 3362ce94fc41SPierre Jolivet ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 33634dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 33644dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 33654dcd73b1SHong Zhang } 33664dcd73b1SHong Zhang 336710c56fdeSHong Zhang /* numeric phase */ 33684dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 336910c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 33704dcd73b1SHong Zhang 3371e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 33724dcd73b1SHong Zhang for (i=0; i<m; i++) { 33734dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 33744dcd73b1SHong Zhang Ii = i + rstart; 337510c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 33764dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 33774dcd73b1SHong Zhang } 3378e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 337910c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 338010c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 33814dcd73b1SHong Zhang PetscFunctionReturn(0); 33824dcd73b1SHong Zhang } 3383