1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 107087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 11a30f8f8cSSatish Balay { 12f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 13dfbe8321SBarry Smith PetscErrorCode ierr; 14a30f8f8cSSatish Balay 15a30f8f8cSSatish Balay PetscFunctionBegin; 16a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 17a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 18a30f8f8cSSatish Balay PetscFunctionReturn(0); 19a30f8f8cSSatish Balay } 20a30f8f8cSSatish Balay 217087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 22a30f8f8cSSatish Balay { 23f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 24dfbe8321SBarry Smith PetscErrorCode ierr; 25a30f8f8cSSatish Balay 26a30f8f8cSSatish Balay PetscFunctionBegin; 27a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 28a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 29a30f8f8cSSatish Balay PetscFunctionReturn(0); 30a30f8f8cSSatish Balay } 31a30f8f8cSSatish Balay 32d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 33a30f8f8cSSatish Balay { \ 34a30f8f8cSSatish Balay \ 35a30f8f8cSSatish Balay brow = row/bs; \ 36a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 37a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 38a30f8f8cSSatish Balay bcol = col/bs; \ 39a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 40a30f8f8cSSatish Balay low = 0; high = nrow; \ 41a30f8f8cSSatish Balay while (high-low > 3) { \ 42a30f8f8cSSatish Balay t = (low+high)/2; \ 43a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 44a30f8f8cSSatish Balay else low = t; \ 45a30f8f8cSSatish Balay } \ 46a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 47a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 48a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 49a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 50a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 51a30f8f8cSSatish Balay else *bap = value; \ 52a30f8f8cSSatish Balay goto a_noinsert; \ 53a30f8f8cSSatish Balay } \ 54a30f8f8cSSatish Balay } \ 55a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 56d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 57fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 58a30f8f8cSSatish Balay N = nrow++ - 1; \ 59a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 60a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 61a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 62a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 63a30f8f8cSSatish Balay } \ 64a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 65a30f8f8cSSatish Balay rp[_i] = bcol; \ 66a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 67e56f5c9eSBarry Smith A->nonzerostate++;\ 68a30f8f8cSSatish Balay a_noinsert:; \ 69a30f8f8cSSatish Balay ailen[brow] = nrow; \ 70a30f8f8cSSatish Balay } 71e5e170daSBarry Smith 72d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 73a30f8f8cSSatish Balay { \ 74a30f8f8cSSatish Balay brow = row/bs; \ 75a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 76a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 77a30f8f8cSSatish Balay bcol = col/bs; \ 78a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 79a30f8f8cSSatish Balay low = 0; high = nrow; \ 80a30f8f8cSSatish Balay while (high-low > 3) { \ 81a30f8f8cSSatish Balay t = (low+high)/2; \ 82a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 83a30f8f8cSSatish Balay else low = t; \ 84a30f8f8cSSatish Balay } \ 85a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 86a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 87a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 88a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 89a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 90a30f8f8cSSatish Balay else *bap = value; \ 91a30f8f8cSSatish Balay goto b_noinsert; \ 92a30f8f8cSSatish Balay } \ 93a30f8f8cSSatish Balay } \ 94a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 95d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 96fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 97a30f8f8cSSatish Balay N = nrow++ - 1; \ 98a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 99a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 100a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 101a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 102a30f8f8cSSatish Balay } \ 103a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 104a30f8f8cSSatish Balay rp[_i] = bcol; \ 105a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 106e56f5c9eSBarry Smith B->nonzerostate++;\ 107a30f8f8cSSatish Balay b_noinsert:; \ 108a30f8f8cSSatish Balay bilen[brow] = nrow; \ 109a30f8f8cSSatish Balay } 110a30f8f8cSSatish Balay 111a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 112a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 113a30f8f8cSSatish Balay */ 114dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 115a30f8f8cSSatish Balay { 116a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 117a30f8f8cSSatish Balay MatScalar value; 118ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 119dfbe8321SBarry Smith PetscErrorCode ierr; 1201302d50aSBarry Smith PetscInt i,j,row,col; 121d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 122d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 123d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 124a30f8f8cSSatish Balay 125a30f8f8cSSatish Balay /* Some Variables required in the macro */ 126a30f8f8cSSatish Balay Mat A = baij->A; 127a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1281302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 129a30f8f8cSSatish Balay MatScalar *aa =a->a; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay Mat B = baij->B; 132a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1331302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 134a30f8f8cSSatish Balay MatScalar *ba =b->a; 135a30f8f8cSSatish Balay 1361302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1371302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 138a30f8f8cSSatish Balay MatScalar *ap,*bap; 139a30f8f8cSSatish Balay 140a30f8f8cSSatish Balay /* for stash */ 1410298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1420298fd71SBarry Smith MatScalar *v_loc = NULL; 143a30f8f8cSSatish Balay 144a30f8f8cSSatish Balay PetscFunctionBegin; 145a30f8f8cSSatish Balay if (!baij->donotstash) { 14659ffdab8SBarry Smith if (n > baij->n_loc) { 14759ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 14859ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 149785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 150785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15126fbe8dcSKarl Rupp 15259ffdab8SBarry Smith baij->n_loc = n; 15359ffdab8SBarry Smith } 15459ffdab8SBarry Smith in_loc = baij->in_loc; 15559ffdab8SBarry Smith v_loc = baij->v_loc; 156a30f8f8cSSatish Balay } 157a30f8f8cSSatish Balay 158a30f8f8cSSatish Balay for (i=0; i<m; i++) { 159a30f8f8cSSatish Balay if (im[i] < 0) continue; 1602515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 161e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 162a30f8f8cSSatish Balay #endif 163a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 164a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 165a30f8f8cSSatish Balay for (j=0; j<n; j++) { 16601b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 16701b2bd88SHong Zhang if (a->ignore_ltriangular) { 16801b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 16926fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17001b2bd88SHong Zhang } 171a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 172a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 173a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 174a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 175db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 176db4deed7SKarl Rupp else value = v[i+j*m]; 177d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 178a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 179a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 181cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 182a30f8f8cSSatish Balay #endif 183a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 184a30f8f8cSSatish Balay if (mat->was_assembled) { 185a30f8f8cSSatish Balay if (!baij->colmap) { 186ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 187a30f8f8cSSatish Balay } 188a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 189a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19071730473SSatish Balay col = col - 1; 191a30f8f8cSSatish Balay #else 19271730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 193a30f8f8cSSatish Balay #endif 194a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 195ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 196a30f8f8cSSatish Balay col = in[j]; 197a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 198a30f8f8cSSatish Balay B = baij->B; 199a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 200a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 201a30f8f8cSSatish Balay ba = b->a; 20271730473SSatish Balay } else col += in[j]%bs; 203a30f8f8cSSatish Balay } else col = in[j]; 204db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 205db4deed7SKarl Rupp else value = v[i+j*m]; 206d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 207a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 208a30f8f8cSSatish Balay } 209a30f8f8cSSatish Balay } 210a30f8f8cSSatish Balay } else { /* off processor entry */ 2114cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 212a30f8f8cSSatish Balay if (!baij->donotstash) { 2135080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 214a30f8f8cSSatish Balay n_loc = 0; 215a30f8f8cSSatish Balay for (j=0; j<n; j++) { 216f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 217a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 218a30f8f8cSSatish Balay if (roworiented) { 219a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 220a30f8f8cSSatish Balay } else { 221a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 222a30f8f8cSSatish Balay } 223a30f8f8cSSatish Balay n_loc++; 224a30f8f8cSSatish Balay } 225b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 226a30f8f8cSSatish Balay } 227a30f8f8cSSatish Balay } 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay PetscFunctionReturn(0); 230a30f8f8cSSatish Balay } 231a30f8f8cSSatish Balay 23236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 23336bd2089SBarry Smith { 23436bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 23536bd2089SBarry Smith PetscErrorCode ierr; 23636bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 23736bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 23836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 23936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 24036bd2089SBarry Smith const PetscScalar *value = v; 24136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 24236bd2089SBarry Smith 24336bd2089SBarry Smith PetscFunctionBegin; 24436bd2089SBarry Smith if (col < row) { 24536bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 24636bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 24736bd2089SBarry Smith } 24836bd2089SBarry Smith rp = aj + ai[row]; 24936bd2089SBarry Smith ap = aa + bs2*ai[row]; 25036bd2089SBarry Smith rmax = imax[row]; 25136bd2089SBarry Smith nrow = ailen[row]; 25236bd2089SBarry Smith value = v; 25336bd2089SBarry Smith low = 0; 25436bd2089SBarry Smith high = nrow; 25536bd2089SBarry Smith 25636bd2089SBarry Smith while (high-low > 7) { 25736bd2089SBarry Smith t = (low+high)/2; 25836bd2089SBarry Smith if (rp[t] > col) high = t; 25936bd2089SBarry Smith else low = t; 26036bd2089SBarry Smith } 26136bd2089SBarry Smith for (i=low; i<high; i++) { 26236bd2089SBarry Smith if (rp[i] > col) break; 26336bd2089SBarry Smith if (rp[i] == col) { 26436bd2089SBarry Smith bap = ap + bs2*i; 26536bd2089SBarry Smith if (roworiented) { 26636bd2089SBarry Smith if (is == ADD_VALUES) { 26736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 26836bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 26936bd2089SBarry Smith bap[jj] += *value++; 27036bd2089SBarry Smith } 27136bd2089SBarry Smith } 27236bd2089SBarry Smith } else { 27336bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 27436bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 27536bd2089SBarry Smith bap[jj] = *value++; 27636bd2089SBarry Smith } 27736bd2089SBarry Smith } 27836bd2089SBarry Smith } 27936bd2089SBarry Smith } else { 28036bd2089SBarry Smith if (is == ADD_VALUES) { 28136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 28236bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 28336bd2089SBarry Smith *bap++ += *value++; 28436bd2089SBarry Smith } 28536bd2089SBarry Smith } 28636bd2089SBarry Smith } else { 28736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 28836bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 28936bd2089SBarry Smith *bap++ = *value++; 29036bd2089SBarry Smith } 29136bd2089SBarry Smith } 29236bd2089SBarry Smith } 29336bd2089SBarry Smith } 29436bd2089SBarry Smith goto noinsert2; 29536bd2089SBarry Smith } 29636bd2089SBarry Smith } 29736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 29836bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 29936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 30036bd2089SBarry Smith N = nrow++ - 1; high++; 30136bd2089SBarry Smith /* shift up all the later entries in this row */ 30236bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 30336bd2089SBarry Smith rp[ii+1] = rp[ii]; 30436bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 30536bd2089SBarry Smith } 30636bd2089SBarry Smith if (N >= i) { 30736bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 30836bd2089SBarry Smith } 30936bd2089SBarry Smith rp[i] = col; 31036bd2089SBarry Smith bap = ap + bs2*i; 31136bd2089SBarry Smith if (roworiented) { 31236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 31336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 31436bd2089SBarry Smith bap[jj] = *value++; 31536bd2089SBarry Smith } 31636bd2089SBarry Smith } 31736bd2089SBarry Smith } else { 31836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 31936bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 32036bd2089SBarry Smith *bap++ = *value++; 32136bd2089SBarry Smith } 32236bd2089SBarry Smith } 32336bd2089SBarry Smith } 32436bd2089SBarry Smith noinsert2:; 32536bd2089SBarry Smith ailen[row] = nrow; 32636bd2089SBarry Smith PetscFunctionReturn(0); 32736bd2089SBarry Smith } 32836bd2089SBarry Smith 32936bd2089SBarry Smith /* 33036bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 33136bd2089SBarry Smith */ 33236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 33336bd2089SBarry Smith { 33436bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 33536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 33636bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 33736bd2089SBarry Smith PetscErrorCode ierr; 33836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 33936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 34036bd2089SBarry Smith const PetscScalar *value = v; 34136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 34236bd2089SBarry Smith 34336bd2089SBarry Smith PetscFunctionBegin; 34436bd2089SBarry Smith rp = aj + ai[row]; 34536bd2089SBarry Smith ap = aa + bs2*ai[row]; 34636bd2089SBarry Smith rmax = imax[row]; 34736bd2089SBarry Smith nrow = ailen[row]; 34836bd2089SBarry Smith low = 0; 34936bd2089SBarry Smith high = nrow; 35036bd2089SBarry Smith value = v; 35136bd2089SBarry Smith while (high-low > 7) { 35236bd2089SBarry Smith t = (low+high)/2; 35336bd2089SBarry Smith if (rp[t] > col) high = t; 35436bd2089SBarry Smith else low = t; 35536bd2089SBarry Smith } 35636bd2089SBarry Smith for (i=low; i<high; i++) { 35736bd2089SBarry Smith if (rp[i] > col) break; 35836bd2089SBarry Smith if (rp[i] == col) { 35936bd2089SBarry Smith bap = ap + bs2*i; 36036bd2089SBarry Smith if (roworiented) { 36136bd2089SBarry Smith if (is == ADD_VALUES) { 36236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 36336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 36436bd2089SBarry Smith bap[jj] += *value++; 36536bd2089SBarry Smith } 36636bd2089SBarry Smith } 36736bd2089SBarry Smith } else { 36836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 36936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37036bd2089SBarry Smith bap[jj] = *value++; 37136bd2089SBarry Smith } 37236bd2089SBarry Smith } 37336bd2089SBarry Smith } 37436bd2089SBarry Smith } else { 37536bd2089SBarry Smith if (is == ADD_VALUES) { 37636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 37736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 37836bd2089SBarry Smith bap[jj] += value[jj]; 37936bd2089SBarry Smith } 38036bd2089SBarry Smith bap += bs; 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } else { 38336bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 38436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38536bd2089SBarry Smith bap[jj] = value[jj]; 38636bd2089SBarry Smith } 38736bd2089SBarry Smith bap += bs; 38836bd2089SBarry Smith } 38936bd2089SBarry Smith } 39036bd2089SBarry Smith } 39136bd2089SBarry Smith goto noinsert2; 39236bd2089SBarry Smith } 39336bd2089SBarry Smith } 39436bd2089SBarry Smith if (nonew == 1) goto noinsert2; 39536bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 39636bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 39736bd2089SBarry Smith N = nrow++ - 1; high++; 39836bd2089SBarry Smith /* shift up all the later entries in this row */ 39936bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 40036bd2089SBarry Smith rp[ii+1] = rp[ii]; 40136bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 40236bd2089SBarry Smith } 40336bd2089SBarry Smith if (N >= i) { 40436bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 40536bd2089SBarry Smith } 40636bd2089SBarry Smith rp[i] = col; 40736bd2089SBarry Smith bap = ap + bs2*i; 40836bd2089SBarry Smith if (roworiented) { 40936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 41136bd2089SBarry Smith bap[jj] = *value++; 41236bd2089SBarry Smith } 41336bd2089SBarry Smith } 41436bd2089SBarry Smith } else { 41536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 41736bd2089SBarry Smith *bap++ = *value++; 41836bd2089SBarry Smith } 41936bd2089SBarry Smith } 42036bd2089SBarry Smith } 42136bd2089SBarry Smith noinsert2:; 42236bd2089SBarry Smith ailen[row] = nrow; 42336bd2089SBarry Smith PetscFunctionReturn(0); 42436bd2089SBarry Smith } 42536bd2089SBarry Smith 42636bd2089SBarry Smith /* 42736bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 42836bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 42936bd2089SBarry Smith */ 430dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 431a30f8f8cSSatish Balay { 4320880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 433f15d580aSBarry Smith const MatScalar *value; 434f15d580aSBarry Smith MatScalar *barray =baij->barray; 435ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 436dfbe8321SBarry Smith PetscErrorCode ierr; 437899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 438899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 439d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 4400880e062SHong Zhang 441a30f8f8cSSatish Balay PetscFunctionBegin; 4420880e062SHong Zhang if (!barray) { 443785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 4440880e062SHong Zhang baij->barray = barray; 4450880e062SHong Zhang } 4460880e062SHong Zhang 4470880e062SHong Zhang if (roworiented) { 4480880e062SHong Zhang stepval = (n-1)*bs; 4490880e062SHong Zhang } else { 4500880e062SHong Zhang stepval = (m-1)*bs; 4510880e062SHong Zhang } 4520880e062SHong Zhang for (i=0; i<m; i++) { 4530880e062SHong Zhang if (im[i] < 0) continue; 4542515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 455bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 4560880e062SHong Zhang #endif 4570880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4580880e062SHong Zhang row = im[i] - rstart; 4590880e062SHong Zhang for (j=0; j<n; j++) { 460f3f98c53SJed Brown if (im[i] > in[j]) { 461f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 462e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 463f3f98c53SJed Brown } 4640880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4650880e062SHong Zhang if ((roworiented) && (n == 1)) { 466f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4670880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 468f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4690880e062SHong Zhang } else { /* Here a copy is required */ 4700880e062SHong Zhang if (roworiented) { 4710880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4720880e062SHong Zhang } else { 4730880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4740880e062SHong Zhang } 4750880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4760880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4770880e062SHong Zhang *barray++ = *value++; 4780880e062SHong Zhang } 4790880e062SHong Zhang } 4800880e062SHong Zhang barray -=bs2; 4810880e062SHong Zhang } 4820880e062SHong Zhang 4830880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 4840880e062SHong Zhang col = in[j] - cstart; 48536bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 48626fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4872515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 488bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 4890880e062SHong Zhang #endif 4900880e062SHong Zhang else { 4910880e062SHong Zhang if (mat->was_assembled) { 4920880e062SHong Zhang if (!baij->colmap) { 493ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4940880e062SHong Zhang } 4950880e062SHong Zhang 4962515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 4970880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 4981302d50aSBarry Smith { PetscInt data; 4990880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 500e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5010880e062SHong Zhang } 5020880e062SHong Zhang #else 503e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5040880e062SHong Zhang #endif 5050880e062SHong Zhang #endif 5060880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5070880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5080880e062SHong Zhang col = (col - 1)/bs; 5090880e062SHong Zhang #else 5100880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5110880e062SHong Zhang #endif 5120880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 513ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5140880e062SHong Zhang col = in[j]; 5150880e062SHong Zhang } 51626fbe8dcSKarl Rupp } else col = in[j]; 51736bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 5180880e062SHong Zhang } 5190880e062SHong Zhang } 5200880e062SHong Zhang } else { 521bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 5220880e062SHong Zhang if (!baij->donotstash) { 5230880e062SHong Zhang if (roworiented) { 5240880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5250880e062SHong Zhang } else { 5260880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5270880e062SHong Zhang } 5280880e062SHong Zhang } 5290880e062SHong Zhang } 5300880e062SHong Zhang } 5310880e062SHong Zhang PetscFunctionReturn(0); 532a30f8f8cSSatish Balay } 533a30f8f8cSSatish Balay 5341302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 535a30f8f8cSSatish Balay { 536f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5376849ba73SBarry Smith PetscErrorCode ierr; 538d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 539d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 540a30f8f8cSSatish Balay 541a30f8f8cSSatish Balay PetscFunctionBegin; 542a30f8f8cSSatish Balay for (i=0; i<m; i++) { 543e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 544e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 545a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 546a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 547a30f8f8cSSatish Balay for (j=0; j<n; j++) { 548e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 549e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 550a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 551a30f8f8cSSatish Balay col = idxn[j] - bscstart; 552c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 553a30f8f8cSSatish Balay } else { 554a30f8f8cSSatish Balay if (!baij->colmap) { 555ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 556a30f8f8cSSatish Balay } 557a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 558a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 559a30f8f8cSSatish Balay data--; 560a30f8f8cSSatish Balay #else 561a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 562a30f8f8cSSatish Balay #endif 563a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 564a30f8f8cSSatish Balay else { 565a30f8f8cSSatish Balay col = data + idxn[j]%bs; 566e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay } 570f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay PetscFunctionReturn(0); 573a30f8f8cSSatish Balay } 574a30f8f8cSSatish Balay 575dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 576a30f8f8cSSatish Balay { 577a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 578dfbe8321SBarry Smith PetscErrorCode ierr; 579a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 580a30f8f8cSSatish Balay 581a30f8f8cSSatish Balay PetscFunctionBegin; 582a30f8f8cSSatish Balay if (baij->size == 1) { 583a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 584a30f8f8cSSatish Balay } else { 585a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 586785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 587a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 588a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 589a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 590a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 591b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 5928f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 593a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 5940b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 5950b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 5960b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 5970b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 598899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 599d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6000b8dc8d2SHong Zhang MatScalar *v; 6010b8dc8d2SHong Zhang 602dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 603d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6040b8dc8d2SHong Zhang /* Amat */ 6050b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6060b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6070b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6080b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6090b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6100b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6110b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6120b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6130b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6140b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6150b8dc8d2SHong Zhang /* non-diagonal block */ 6160b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 6170b8dc8d2SHong Zhang } 6180b8dc8d2SHong Zhang } 6190b8dc8d2SHong Zhang } 62051f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 6210b8dc8d2SHong Zhang } 6220b8dc8d2SHong Zhang /* Bmat */ 6230b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 6240b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6250b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6260b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 6270b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6280b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 6290b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6300b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6310b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6320b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6330b8dc8d2SHong Zhang rsum[grow+row] += vabs; 6340b8dc8d2SHong Zhang } 6350b8dc8d2SHong Zhang } 6360b8dc8d2SHong Zhang } 63751f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 6380b8dc8d2SHong Zhang } 639b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6400b8dc8d2SHong Zhang *norm = 0.0; 641d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 6420b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 6430b8dc8d2SHong Zhang } 64474ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 645f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 646a30f8f8cSSatish Balay } 647a30f8f8cSSatish Balay PetscFunctionReturn(0); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 650dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 651a30f8f8cSSatish Balay { 652a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 653dfbe8321SBarry Smith PetscErrorCode ierr; 6541302d50aSBarry Smith PetscInt nstash,reallocs; 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay PetscFunctionBegin; 65726fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 658a30f8f8cSSatish Balay 659d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 6601e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 661a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6621e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 663a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6641e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 665a30f8f8cSSatish Balay PetscFunctionReturn(0); 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay 668dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 669a30f8f8cSSatish Balay { 670a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 671a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 6726849ba73SBarry Smith PetscErrorCode ierr; 67313f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 674e44c0bd4SBarry Smith PetscInt *row,*col; 675ace3abfcSBarry Smith PetscBool other_disassembled; 67613f74950SBarry Smith PetscMPIInt n; 677ace3abfcSBarry Smith PetscBool r1,r2,r3; 678a30f8f8cSSatish Balay MatScalar *val; 679a30f8f8cSSatish Balay 68091c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 681a30f8f8cSSatish Balay PetscFunctionBegin; 6824cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 683a30f8f8cSSatish Balay while (1) { 684a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 685a30f8f8cSSatish Balay if (!flg) break; 686a30f8f8cSSatish Balay 687a30f8f8cSSatish Balay for (i=0; i<n;) { 688a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 68926fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 69026fbe8dcSKarl Rupp if (row[j] != rstart) break; 69126fbe8dcSKarl Rupp } 692a30f8f8cSSatish Balay if (j < n) ncols = j-i; 693a30f8f8cSSatish Balay else ncols = n-i; 694a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 6954b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 696a30f8f8cSSatish Balay i = j; 697a30f8f8cSSatish Balay } 698a30f8f8cSSatish Balay } 699a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 700a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 701a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 702a30f8f8cSSatish Balay restore the original flags */ 703a30f8f8cSSatish Balay r1 = baij->roworiented; 704a30f8f8cSSatish Balay r2 = a->roworiented; 70591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 70626fbe8dcSKarl Rupp 707a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 708a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 70926fbe8dcSKarl Rupp 71091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 711a30f8f8cSSatish Balay while (1) { 712a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 713a30f8f8cSSatish Balay if (!flg) break; 714a30f8f8cSSatish Balay 715a30f8f8cSSatish Balay for (i=0; i<n;) { 716a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 71726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 71826fbe8dcSKarl Rupp if (row[j] != rstart) break; 71926fbe8dcSKarl Rupp } 720a30f8f8cSSatish Balay if (j < n) ncols = j-i; 721a30f8f8cSSatish Balay else ncols = n-i; 7224b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 723a30f8f8cSSatish Balay i = j; 724a30f8f8cSSatish Balay } 725a30f8f8cSSatish Balay } 726a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 72726fbe8dcSKarl Rupp 728a30f8f8cSSatish Balay baij->roworiented = r1; 729a30f8f8cSSatish Balay a->roworiented = r2; 73026fbe8dcSKarl Rupp 73191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 732a30f8f8cSSatish Balay } 733a30f8f8cSSatish Balay 734a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 735a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 738a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 739a30f8f8cSSatish Balay /* 740a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 741a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 742a30f8f8cSSatish Balay */ 743a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 744b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 745a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 746ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 747a30f8f8cSSatish Balay } 748a30f8f8cSSatish Balay } 749a30f8f8cSSatish Balay 750a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 75140781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 752a30f8f8cSSatish Balay } 753a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 755a30f8f8cSSatish Balay 75674ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 75726fbe8dcSKarl Rupp 758a30f8f8cSSatish Balay baij->rowvalues = 0; 7594f9cfa9eSBarry Smith 7604f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 7614f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 762e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 763b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 764e56f5c9eSBarry Smith } 765a30f8f8cSSatish Balay PetscFunctionReturn(0); 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay 768dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 7699804daf3SBarry Smith #include <petscdraw.h> 7706849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 771a30f8f8cSSatish Balay { 772a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 773dfbe8321SBarry Smith PetscErrorCode ierr; 774d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 7757da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 776ace3abfcSBarry Smith PetscBool iascii,isdraw; 777b0a32e0cSBarry Smith PetscViewer sviewer; 778f3ef73ceSBarry Smith PetscViewerFormat format; 779a30f8f8cSSatish Balay 780a30f8f8cSSatish Balay PetscFunctionBegin; 781251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 782251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 78332077d6dSBarry Smith if (iascii) { 784b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 785456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 786a30f8f8cSSatish Balay MatInfo info; 787ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 788a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 7891575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 7907b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 791a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 792e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 793a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 794e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 795b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7961575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 79707d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 798a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 799a30f8f8cSSatish Balay PetscFunctionReturn(0); 800fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 80177431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 802a30f8f8cSSatish Balay PetscFunctionReturn(0); 803c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 804c1490034SHong Zhang PetscFunctionReturn(0); 805a30f8f8cSSatish Balay } 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay 808a30f8f8cSSatish Balay if (isdraw) { 809b0a32e0cSBarry Smith PetscDraw draw; 810ace3abfcSBarry Smith PetscBool isnull; 811b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 81245f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 81345f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 814a30f8f8cSSatish Balay } 815a30f8f8cSSatish Balay 8167da1fb6eSBarry Smith { 817a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 818a30f8f8cSSatish Balay Mat A; 81965d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 82065d70643SHong Zhang Mat_SeqBAIJ *Bloc; 821d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 822a30f8f8cSSatish Balay MatScalar *a; 8233e219373SBarry Smith const char *matname; 824a30f8f8cSSatish Balay 825f204ca49SKris Buschelman /* Should this be the same type as mat? */ 826ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 827a30f8f8cSSatish Balay if (!rank) { 828f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 829a30f8f8cSSatish Balay } else { 830f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 831a30f8f8cSSatish Balay } 832f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 8330298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 8342b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 8353bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 836a30f8f8cSSatish Balay 837a30f8f8cSSatish Balay /* copy over the A part */ 83865d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 839a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 840785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 841a30f8f8cSSatish Balay 842a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 843e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 84426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 845a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 846e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 847a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 848dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 84926fbe8dcSKarl Rupp col++; 85026fbe8dcSKarl Rupp a += bs; 851a30f8f8cSSatish Balay } 852a30f8f8cSSatish Balay } 853a30f8f8cSSatish Balay } 854a30f8f8cSSatish Balay /* copy over the B part */ 85565d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 85665d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 857a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 858e9f7bc9eSHong Zhang 859e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 86026fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 861a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 862a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 863a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 864799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 86526fbe8dcSKarl Rupp col++; 86626fbe8dcSKarl Rupp a += bs; 867a30f8f8cSSatish Balay } 868a30f8f8cSSatish Balay } 869a30f8f8cSSatish Balay } 870a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 871a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 872a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 873a30f8f8cSSatish Balay /* 874a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 875b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 876a30f8f8cSSatish Balay */ 8773f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 878ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 8793e219373SBarry Smith if (!rank) { 880ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 881383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 882a30f8f8cSSatish Balay } 8833f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 8841575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8856bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 886a30f8f8cSSatish Balay } 887a30f8f8cSSatish Balay PetscFunctionReturn(0); 888a30f8f8cSSatish Balay } 889a30f8f8cSSatish Balay 890d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer) 891d1654148SHong Zhang { 892d1654148SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data; 893d1654148SHong Zhang Mat_SeqSBAIJ *A = (Mat_SeqSBAIJ*)a->A->data; 894d1654148SHong Zhang Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 895d1654148SHong Zhang PetscErrorCode ierr; 896d1654148SHong Zhang PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 897d1654148SHong Zhang PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 898d1654148SHong Zhang int fd; 899d1654148SHong Zhang PetscScalar *column_values; 900d1654148SHong Zhang FILE *file; 901d1654148SHong Zhang PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 902d1654148SHong Zhang PetscInt message_count,flowcontrolcount; 903d1654148SHong Zhang 904d1654148SHong Zhang PetscFunctionBegin; 905d1654148SHong Zhang ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 906d1654148SHong Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 907d1654148SHong Zhang nz = bs2*(A->nz + B->nz); 908d1654148SHong Zhang rlen = mat->rmap->n; 909d1654148SHong Zhang ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 910d1654148SHong Zhang if (!rank) { 911d1654148SHong Zhang header[0] = MAT_FILE_CLASSID; 912d1654148SHong Zhang header[1] = mat->rmap->N; 913d1654148SHong Zhang header[2] = mat->cmap->N; 914d1654148SHong Zhang 915d1654148SHong Zhang ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 916d1654148SHong Zhang ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 917d1654148SHong Zhang /* get largest number of rows any processor has */ 918d1654148SHong Zhang range = mat->rmap->range; 919d1654148SHong Zhang for (i=1; i<size; i++) { 920d1654148SHong Zhang rlen = PetscMax(rlen,range[i+1] - range[i]); 921d1654148SHong Zhang } 922d1654148SHong Zhang } else { 923d1654148SHong Zhang ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 924d1654148SHong Zhang } 925d1654148SHong Zhang 926d1654148SHong Zhang ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr); 927d1654148SHong Zhang /* compute lengths of each row */ 928d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 929d1654148SHong Zhang crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 930d1654148SHong Zhang } 931d1654148SHong Zhang /* store the row lengths to the file */ 932d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 933d1654148SHong Zhang if (!rank) { 934d1654148SHong Zhang MPI_Status status; 935d1654148SHong Zhang ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr); 936d1654148SHong Zhang rlen = (range[1] - range[0])/bs; 937d1654148SHong Zhang for (i=0; i<rlen; i++) { 938d1654148SHong Zhang for (j=0; j<bs; j++) { 939d1654148SHong Zhang row_lens[i*bs+j] = bs*crow_lens[i]; 940d1654148SHong Zhang } 941d1654148SHong Zhang } 942d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 943d1654148SHong Zhang for (i=1; i<size; i++) { 944d1654148SHong Zhang rlen = (range[i+1] - range[i])/bs; 945d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 946d1654148SHong Zhang ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 947d1654148SHong Zhang for (k=0; k<rlen; k++) { 948d1654148SHong Zhang for (j=0; j<bs; j++) { 949d1654148SHong Zhang row_lens[k*bs+j] = bs*crow_lens[k]; 950d1654148SHong Zhang } 951d1654148SHong Zhang } 952d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 953d1654148SHong Zhang } 954d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 955d1654148SHong Zhang ierr = PetscFree(row_lens);CHKERRQ(ierr); 956d1654148SHong Zhang } else { 957d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 958d1654148SHong Zhang ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 959d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 960d1654148SHong Zhang } 961d1654148SHong Zhang ierr = PetscFree(crow_lens);CHKERRQ(ierr); 962d1654148SHong Zhang 963d1654148SHong Zhang /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 964d1654148SHong Zhang information needed to make it for each row from a block row. This does require more communication but still not more than 965d1654148SHong Zhang the communication needed for the nonzero values */ 966d1654148SHong Zhang nzmax = nz; /* space a largest processor needs */ 967d1654148SHong Zhang ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 968d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr); 969d1654148SHong Zhang cnt = 0; 970d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 971d1654148SHong Zhang pcnt = cnt; 972d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 973d1654148SHong Zhang if ((col = garray[B->j[j]]) > cstart) break; 974d1654148SHong Zhang for (l=0; l<bs; l++) { 975d1654148SHong Zhang column_indices[cnt++] = bs*col+l; 976d1654148SHong Zhang } 977d1654148SHong Zhang } 978d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 979d1654148SHong Zhang for (l=0; l<bs; l++) { 980d1654148SHong Zhang column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 981d1654148SHong Zhang } 982d1654148SHong Zhang } 983d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 984d1654148SHong Zhang for (l=0; l<bs; l++) { 985d1654148SHong Zhang column_indices[cnt++] = bs*garray[B->j[j]]+l; 986d1654148SHong Zhang } 987d1654148SHong Zhang } 988d1654148SHong Zhang len = cnt - pcnt; 989d1654148SHong Zhang for (k=1; k<bs; k++) { 990d1654148SHong Zhang ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr); 991d1654148SHong Zhang cnt += len; 992d1654148SHong Zhang } 993d1654148SHong Zhang } 994d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 995d1654148SHong Zhang 996d1654148SHong Zhang /* store the columns to the file */ 997d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 998d1654148SHong Zhang if (!rank) { 999d1654148SHong Zhang MPI_Status status; 1000d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1001d1654148SHong Zhang for (i=1; i<size; i++) { 1002d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1003d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1004d1654148SHong Zhang ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1005d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1006d1654148SHong Zhang } 1007d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1008d1654148SHong Zhang } else { 1009d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1010d1654148SHong Zhang ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1011d1654148SHong Zhang ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1012d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1013d1654148SHong Zhang } 1014d1654148SHong Zhang ierr = PetscFree(column_indices);CHKERRQ(ierr); 1015d1654148SHong Zhang 1016d1654148SHong Zhang /* load up the numerical values */ 1017d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr); 1018d1654148SHong Zhang cnt = 0; 1019d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1020d1654148SHong Zhang rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1021d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 1022d1654148SHong Zhang if (garray[B->j[j]] > cstart) break; 1023d1654148SHong Zhang for (l=0; l<bs; l++) { 1024d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1025d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1026d1654148SHong Zhang } 1027d1654148SHong Zhang } 1028d1654148SHong Zhang cnt += bs; 1029d1654148SHong Zhang } 1030d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1031d1654148SHong Zhang for (l=0; l<bs; l++) { 1032d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1033d1654148SHong Zhang column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1034d1654148SHong Zhang } 1035d1654148SHong Zhang } 1036d1654148SHong Zhang cnt += bs; 1037d1654148SHong Zhang } 1038d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1039d1654148SHong Zhang for (l=0; l<bs; l++) { 1040d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1041d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1042d1654148SHong Zhang } 1043d1654148SHong Zhang } 1044d1654148SHong Zhang cnt += bs; 1045d1654148SHong Zhang } 1046d1654148SHong Zhang cnt += (bs-1)*rlen; 1047d1654148SHong Zhang } 1048d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1049d1654148SHong Zhang 1050d1654148SHong Zhang /* store the column values to the file */ 1051d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1052d1654148SHong Zhang if (!rank) { 1053d1654148SHong Zhang MPI_Status status; 1054d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1055d1654148SHong Zhang for (i=1; i<size; i++) { 1056d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1057d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1058d1654148SHong Zhang ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1059d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1060d1654148SHong Zhang } 1061d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1062d1654148SHong Zhang } else { 1063d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1064d1654148SHong Zhang ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1065d1654148SHong Zhang ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1066d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1067d1654148SHong Zhang } 1068d1654148SHong Zhang ierr = PetscFree(column_values);CHKERRQ(ierr); 1069d1654148SHong Zhang 1070d1654148SHong Zhang ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1071d1654148SHong Zhang if (file) { 1072d1654148SHong Zhang fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1073d1654148SHong Zhang } 1074d1654148SHong Zhang PetscFunctionReturn(0); 1075d1654148SHong Zhang } 1076d1654148SHong Zhang 1077dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 1078a30f8f8cSSatish Balay { 1079dfbe8321SBarry Smith PetscErrorCode ierr; 1080ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 1081a30f8f8cSSatish Balay 1082a30f8f8cSSatish Balay PetscFunctionBegin; 1083251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1084251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1085251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1086251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1087d1654148SHong Zhang if (iascii || isdraw || issocket) { 1088a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1089d1654148SHong Zhang } else if (isbinary) { 1090d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1091a30f8f8cSSatish Balay } 1092a30f8f8cSSatish Balay PetscFunctionReturn(0); 1093a30f8f8cSSatish Balay } 1094a30f8f8cSSatish Balay 1095dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1096a30f8f8cSSatish Balay { 1097a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1098dfbe8321SBarry Smith PetscErrorCode ierr; 1099a30f8f8cSSatish Balay 1100a30f8f8cSSatish Balay PetscFunctionBegin; 1101a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1102d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1103a30f8f8cSSatish Balay #endif 1104a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1105a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 11066bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 11076bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1108a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 11096bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1110a30f8f8cSSatish Balay #else 111105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1112a30f8f8cSSatish Balay #endif 111305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 11146bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 11156bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 11166bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 11176bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 11186bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 11196bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 11206bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 11216bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 11225755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 112305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 112405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 11256bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 11266bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 11276bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1128ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 112905b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1130a30f8f8cSSatish Balay #endif 113159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 113259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1133899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1134bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1135901853e0SKris Buschelman 1136dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1137bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1138bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1139bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1140bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 11416214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 11426214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 11436214f412SHong Zhang #endif 1144a30f8f8cSSatish Balay PetscFunctionReturn(0); 1145a30f8f8cSSatish Balay } 1146a30f8f8cSSatish Balay 1147547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1148547795f9SHong Zhang { 1149547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1150547795f9SHong Zhang PetscErrorCode ierr; 1151547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 11526de40e93SBarry Smith PetscScalar *from; 11536de40e93SBarry Smith const PetscScalar *x; 1154547795f9SHong Zhang 1155547795f9SHong Zhang PetscFunctionBegin; 1156547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1157e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1158547795f9SHong Zhang 1159547795f9SHong Zhang /* diagonal part */ 1160547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1161547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1162547795f9SHong Zhang 1163547795f9SHong Zhang /* subdiagonal part */ 1164547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1165547795f9SHong Zhang 1166547795f9SHong Zhang /* copy x into the vec slvec0 */ 1167547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 11686de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1169547795f9SHong Zhang 1170547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1171547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 11726de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1173547795f9SHong Zhang 1174547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1175547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1176547795f9SHong Zhang /* supperdiagonal part */ 1177547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1178547795f9SHong Zhang PetscFunctionReturn(0); 1179547795f9SHong Zhang } 1180547795f9SHong Zhang 1181dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1182a9d4b620SHong Zhang { 1183a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1184dfbe8321SBarry Smith PetscErrorCode ierr; 1185d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1186d9ca1df4SBarry Smith PetscScalar *from; 1187d9ca1df4SBarry Smith const PetscScalar *x; 1188a9d4b620SHong Zhang 1189a9d4b620SHong Zhang PetscFunctionBegin; 1190a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1191e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1192a9d4b620SHong Zhang 1193a9d4b620SHong Zhang /* diagonal part */ 1194a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1195fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1196a9d4b620SHong Zhang 1197a9d4b620SHong Zhang /* subdiagonal part */ 1198a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1199fc165ae2SBarry Smith 1200a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 12011ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1202d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1203a9d4b620SHong Zhang 1204fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1205fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1206d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1207fc165ae2SBarry Smith 1208fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1209ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1210a9d4b620SHong Zhang /* supperdiagonal part */ 1211a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1212a9d4b620SHong Zhang PetscFunctionReturn(0); 1213a9d4b620SHong Zhang } 1214a9d4b620SHong Zhang 1215dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1216a30f8f8cSSatish Balay { 1217a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1218dfbe8321SBarry Smith PetscErrorCode ierr; 12191302d50aSBarry Smith PetscInt nt; 1220a30f8f8cSSatish Balay 1221a30f8f8cSSatish Balay PetscFunctionBegin; 1222a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1223e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1224e7e72b3dSBarry Smith 1225a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1226e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 122765d70643SHong Zhang 1228ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1229b941877fSHong Zhang /* do diagonal part */ 1230b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1231b941877fSHong Zhang /* do supperdiagonal part */ 1232ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1233b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1234b941877fSHong Zhang /* do subdiagonal part */ 1235b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1236ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1237ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1238a30f8f8cSSatish Balay PetscFunctionReturn(0); 1239a30f8f8cSSatish Balay } 1240a30f8f8cSSatish Balay 1241dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1242a30f8f8cSSatish Balay { 1243de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1244dfbe8321SBarry Smith PetscErrorCode ierr; 1245d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1246d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1247d9ca1df4SBarry Smith const PetscScalar *x; 1248a9d4b620SHong Zhang 1249a9d4b620SHong Zhang PetscFunctionBegin; 1250a9d4b620SHong Zhang /* 1251ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 12520ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1253a9d4b620SHong Zhang */ 1254a9d4b620SHong Zhang /* diagonal part */ 1255a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 12562dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1257a9d4b620SHong Zhang 1258a9d4b620SHong Zhang /* subdiagonal part */ 1259a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1260a9d4b620SHong Zhang 1261a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 12621ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1263d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1264a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 12651ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1266a9d4b620SHong Zhang 1267ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1268d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1269ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1270a9d4b620SHong Zhang 1271a9d4b620SHong Zhang /* supperdiagonal part */ 1272a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1273a9d4b620SHong Zhang PetscFunctionReturn(0); 1274a9d4b620SHong Zhang } 1275a9d4b620SHong Zhang 1276dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1277a9d4b620SHong Zhang { 1278a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1279dfbe8321SBarry Smith PetscErrorCode ierr; 1280a30f8f8cSSatish Balay 1281a30f8f8cSSatish Balay PetscFunctionBegin; 1282ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1283b941877fSHong Zhang /* do diagonal part */ 1284b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1285b941877fSHong Zhang /* do supperdiagonal part */ 1286ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1287de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1288de8b6608SHong Zhang 1289b941877fSHong Zhang /* do subdiagonal part */ 1290a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1291ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1292ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1293a30f8f8cSSatish Balay PetscFunctionReturn(0); 1294a30f8f8cSSatish Balay } 1295a30f8f8cSSatish Balay 1296a30f8f8cSSatish Balay /* 1297a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1298a30f8f8cSSatish Balay diagonal block 1299a30f8f8cSSatish Balay */ 1300dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1301a30f8f8cSSatish Balay { 1302a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1303dfbe8321SBarry Smith PetscErrorCode ierr; 1304a30f8f8cSSatish Balay 1305a30f8f8cSSatish Balay PetscFunctionBegin; 1306e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1307a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1308a30f8f8cSSatish Balay PetscFunctionReturn(0); 1309a30f8f8cSSatish Balay } 1310a30f8f8cSSatish Balay 1311f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1312a30f8f8cSSatish Balay { 1313a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1314dfbe8321SBarry Smith PetscErrorCode ierr; 1315a30f8f8cSSatish Balay 1316a30f8f8cSSatish Balay PetscFunctionBegin; 1317f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1318f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay PetscFunctionReturn(0); 1320a30f8f8cSSatish Balay } 1321a30f8f8cSSatish Balay 13221302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1323a30f8f8cSSatish Balay { 1324d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1325d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1326d0d4cfc2SHong Zhang PetscErrorCode ierr; 1327d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1328d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1329899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1330d0d4cfc2SHong Zhang 1331a30f8f8cSSatish Balay PetscFunctionBegin; 1332e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1333d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1334d0d4cfc2SHong Zhang 1335d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1336d0d4cfc2SHong Zhang /* 1337d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1338d0d4cfc2SHong Zhang */ 1339d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1340d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1341d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1342d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1343d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 134426fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1345d0d4cfc2SHong Zhang } 1346dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1347d0d4cfc2SHong Zhang } 1348d0d4cfc2SHong Zhang 1349e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1350d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1351d0d4cfc2SHong Zhang 1352d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1353d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1354d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1355d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1356d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1357d0d4cfc2SHong Zhang nztot = nzA + nzB; 1358d0d4cfc2SHong Zhang 1359d0d4cfc2SHong Zhang cmap = mat->garray; 1360d0d4cfc2SHong Zhang if (v || idx) { 1361d0d4cfc2SHong Zhang if (nztot) { 1362d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1363d0d4cfc2SHong Zhang PetscInt imark = -1; 1364d0d4cfc2SHong Zhang if (v) { 1365d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1366d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1367d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1368d0d4cfc2SHong Zhang else break; 1369d0d4cfc2SHong Zhang } 1370d0d4cfc2SHong Zhang imark = i; 1371d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1372d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1373d0d4cfc2SHong Zhang } 1374d0d4cfc2SHong Zhang if (idx) { 1375d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1376d0d4cfc2SHong Zhang if (imark > -1) { 1377d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1378d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1379d0d4cfc2SHong Zhang } 1380d0d4cfc2SHong Zhang } else { 1381d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 138226fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1383d0d4cfc2SHong Zhang else break; 1384d0d4cfc2SHong Zhang } 1385d0d4cfc2SHong Zhang imark = i; 1386d0d4cfc2SHong Zhang } 1387d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1388d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1389d0d4cfc2SHong Zhang } 1390d0d4cfc2SHong Zhang } else { 1391d0d4cfc2SHong Zhang if (idx) *idx = 0; 1392d0d4cfc2SHong Zhang if (v) *v = 0; 1393d0d4cfc2SHong Zhang } 1394d0d4cfc2SHong Zhang } 1395d0d4cfc2SHong Zhang *nz = nztot; 1396d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1397d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1398a30f8f8cSSatish Balay PetscFunctionReturn(0); 1399a30f8f8cSSatish Balay } 1400a30f8f8cSSatish Balay 14011302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1402a30f8f8cSSatish Balay { 1403a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1404a30f8f8cSSatish Balay 1405a30f8f8cSSatish Balay PetscFunctionBegin; 1406e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1407a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1408a30f8f8cSSatish Balay PetscFunctionReturn(0); 1409a30f8f8cSSatish Balay } 1410a30f8f8cSSatish Balay 1411d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1412d0d4cfc2SHong Zhang { 1413d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1414d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1415d0d4cfc2SHong Zhang 1416d0d4cfc2SHong Zhang PetscFunctionBegin; 1417d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1418d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1419d0d4cfc2SHong Zhang } 1420d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1421d0d4cfc2SHong Zhang { 1422d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1423d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1424d0d4cfc2SHong Zhang 1425d0d4cfc2SHong Zhang PetscFunctionBegin; 1426d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1427d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1428d0d4cfc2SHong Zhang } 1429d0d4cfc2SHong Zhang 143099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 143199cafbc1SBarry Smith { 143299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 143399cafbc1SBarry Smith PetscErrorCode ierr; 143499cafbc1SBarry Smith 143599cafbc1SBarry Smith PetscFunctionBegin; 143699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 143799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 143899cafbc1SBarry Smith PetscFunctionReturn(0); 143999cafbc1SBarry Smith } 144099cafbc1SBarry Smith 144199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 144299cafbc1SBarry Smith { 144399cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 144499cafbc1SBarry Smith PetscErrorCode ierr; 144599cafbc1SBarry Smith 144699cafbc1SBarry Smith PetscFunctionBegin; 144799cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 144899cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 144999cafbc1SBarry Smith PetscFunctionReturn(0); 145099cafbc1SBarry Smith } 145199cafbc1SBarry Smith 14527dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 145336032a97SHong Zhang Input: isrow - distributed(parallel), 145436032a97SHong Zhang iscol_local - locally owned (seq) 145536032a97SHong Zhang */ 145636032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 14578f46ffcaSHong Zhang { 14588f46ffcaSHong Zhang PetscErrorCode ierr; 14598f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 14608f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 146136032a97SHong Zhang 146236032a97SHong Zhang PetscFunctionBegin; 14638f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 14648f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 14651098a8e8SHong Zhang if (sz1 > sz2) { 14661098a8e8SHong Zhang *flg = PETSC_FALSE; 14671098a8e8SHong Zhang PetscFunctionReturn(0); 14681098a8e8SHong Zhang } 14698f46ffcaSHong Zhang 14708f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 14718f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 14728f46ffcaSHong Zhang 14738f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 14748f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 14758f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 14768f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 14778f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 14788f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 14798f46ffcaSHong Zhang 14808f46ffcaSHong Zhang nmatch=0; 14818f46ffcaSHong Zhang k = 0; 14828f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 14838f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 14848f46ffcaSHong Zhang if (a1[i] == a2[j]) { 14858f46ffcaSHong Zhang k = j; nmatch++; 14868f46ffcaSHong Zhang break; 14878f46ffcaSHong Zhang } 14888f46ffcaSHong Zhang } 14898f46ffcaSHong Zhang } 14908f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 14918f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 14928f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 14938f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 14941098a8e8SHong Zhang if (nmatch < sz1) { 14951098a8e8SHong Zhang *flg = PETSC_FALSE; 14961098a8e8SHong Zhang } else { 14971098a8e8SHong Zhang *flg = PETSC_TRUE; 14981098a8e8SHong Zhang } 149936032a97SHong Zhang PetscFunctionReturn(0); 15008f46ffcaSHong Zhang } 150136032a97SHong Zhang 15027dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 150336032a97SHong Zhang { 150436032a97SHong Zhang PetscErrorCode ierr; 150536032a97SHong Zhang IS iscol_local; 150636032a97SHong Zhang PetscInt csize; 150736032a97SHong Zhang PetscBool isequal; 150836032a97SHong Zhang 150936032a97SHong Zhang PetscFunctionBegin; 151036032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 151136032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 151236032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 151336032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 151436032a97SHong Zhang } else { 151536032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 151636032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 151736032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 15188f46ffcaSHong Zhang } 15198f46ffcaSHong Zhang 15207dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 15217dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 15228f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 15238f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 15248f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 15258f46ffcaSHong Zhang } 15268f46ffcaSHong Zhang PetscFunctionReturn(0); 15278f46ffcaSHong Zhang } 15288f46ffcaSHong Zhang 1529dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1530a30f8f8cSSatish Balay { 1531a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1532dfbe8321SBarry Smith PetscErrorCode ierr; 1533a30f8f8cSSatish Balay 1534a30f8f8cSSatish Balay PetscFunctionBegin; 1535a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1536a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1537a30f8f8cSSatish Balay PetscFunctionReturn(0); 1538a30f8f8cSSatish Balay } 1539a30f8f8cSSatish Balay 1540dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1541a30f8f8cSSatish Balay { 1542a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1543a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1544dfbe8321SBarry Smith PetscErrorCode ierr; 1545a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1546a30f8f8cSSatish Balay 1547a30f8f8cSSatish Balay PetscFunctionBegin; 1548d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 154926fbe8dcSKarl Rupp 1550a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 155126fbe8dcSKarl Rupp 1552a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1553a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 155426fbe8dcSKarl Rupp 1555a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 155626fbe8dcSKarl Rupp 1557a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1558a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1559a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1560a30f8f8cSSatish Balay info->nz_used = isend[0]; 1561a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1562a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1563a30f8f8cSSatish Balay info->memory = isend[3]; 1564a30f8f8cSSatish Balay info->mallocs = isend[4]; 1565a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1566b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 156726fbe8dcSKarl Rupp 1568a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1569a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1570a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1571a30f8f8cSSatish Balay info->memory = irecv[3]; 1572a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1573a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1574b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 157526fbe8dcSKarl Rupp 1576a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1577a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1578a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1579a30f8f8cSSatish Balay info->memory = irecv[3]; 1580a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1581f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1582a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1583a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1584a30f8f8cSSatish Balay info->factor_mallocs = 0; 1585a30f8f8cSSatish Balay PetscFunctionReturn(0); 1586a30f8f8cSSatish Balay } 1587a30f8f8cSSatish Balay 1588ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1589a30f8f8cSSatish Balay { 1590a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1591d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1592dfbe8321SBarry Smith PetscErrorCode ierr; 1593a30f8f8cSSatish Balay 1594a30f8f8cSSatish Balay PetscFunctionBegin; 1595e98b92d7SKris Buschelman switch (op) { 1596512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1597e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 159828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1599a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1600c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1601e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 160243674050SBarry Smith MatCheckPreallocated(A,1); 16034e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16044e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1605e98b92d7SKris Buschelman break; 1606e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 160743674050SBarry Smith MatCheckPreallocated(A,1); 16084e0d8c25SBarry Smith a->roworiented = flg; 160926fbe8dcSKarl Rupp 16104e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16114e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1612e98b92d7SKris Buschelman break; 16134e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1614290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1615e98b92d7SKris Buschelman break; 1616e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 16174e0d8c25SBarry Smith a->donotstash = flg; 1618e98b92d7SKris Buschelman break; 1619e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 16204e0d8c25SBarry Smith a->ht_flag = flg; 1621e98b92d7SKris Buschelman break; 16229a4540c5SBarry Smith case MAT_HERMITIAN: 162343674050SBarry Smith MatCheckPreallocated(A,1); 1624e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1625eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1626*0f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1627547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1628*0f2140c7SStefano Zampini #endif 1629eeffb40dSHong Zhang break; 1630ffa07934SHong Zhang case MAT_SPD: 1631ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1632ffa07934SHong Zhang A->spd = flg; 1633ffa07934SHong Zhang if (flg) { 1634ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1635ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1636ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1637ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1638ffa07934SHong Zhang } 1639ffa07934SHong Zhang break; 164077e54ba9SKris Buschelman case MAT_SYMMETRIC: 164143674050SBarry Smith MatCheckPreallocated(A,1); 1642eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1643eeffb40dSHong Zhang break; 164477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 164543674050SBarry Smith MatCheckPreallocated(A,1); 1646eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1647eeffb40dSHong Zhang break; 16489a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1649e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1650290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 165177e54ba9SKris Buschelman break; 1652d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 16534e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1654d0d4cfc2SHong Zhang break; 1655d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 16564e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1657d0d4cfc2SHong Zhang break; 1658d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 16594e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1660d0d4cfc2SHong Zhang break; 1661e98b92d7SKris Buschelman default: 1662e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1663a30f8f8cSSatish Balay } 1664a30f8f8cSSatish Balay PetscFunctionReturn(0); 1665a30f8f8cSSatish Balay } 1666a30f8f8cSSatish Balay 1667fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1668a30f8f8cSSatish Balay { 1669dfbe8321SBarry Smith PetscErrorCode ierr; 16706e111a19SKarl Rupp 1671a30f8f8cSSatish Balay PetscFunctionBegin; 1672cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1673999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1674cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 1675cf37664fSBarry Smith ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1676fc4dec0aSBarry Smith } 16778115998fSBarry Smith PetscFunctionReturn(0); 1678a30f8f8cSSatish Balay } 1679a30f8f8cSSatish Balay 1680dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1681a30f8f8cSSatish Balay { 1682a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1683a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1684dfbe8321SBarry Smith PetscErrorCode ierr; 16855e90f9d9SHong Zhang PetscInt nv,m,n; 1686ace3abfcSBarry Smith PetscBool flg; 1687a30f8f8cSSatish Balay 1688a30f8f8cSSatish Balay PetscFunctionBegin; 1689a30f8f8cSSatish Balay if (ll != rr) { 1690b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1691e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1692a30f8f8cSSatish Balay } 1693b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1694b3bf805bSHong Zhang 16955e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1696e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1697b3bf805bSHong Zhang 16985e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1699e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 17005e90f9d9SHong Zhang 1701ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17025e90f9d9SHong Zhang 17035e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 17040298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 17055e90f9d9SHong Zhang 17065e90f9d9SHong Zhang /* scale the diagonal part */ 1707a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1708a30f8f8cSSatish Balay 17095e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1710ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17110298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1712a30f8f8cSSatish Balay PetscFunctionReturn(0); 1713a30f8f8cSSatish Balay } 1714a30f8f8cSSatish Balay 1715dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1716a30f8f8cSSatish Balay { 1717f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1718dfbe8321SBarry Smith PetscErrorCode ierr; 1719a30f8f8cSSatish Balay 1720a30f8f8cSSatish Balay PetscFunctionBegin; 1721a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1722a30f8f8cSSatish Balay PetscFunctionReturn(0); 1723a30f8f8cSSatish Balay } 1724a30f8f8cSSatish Balay 17256849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1726a30f8f8cSSatish Balay 1727ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1728a30f8f8cSSatish Balay { 1729a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1730a30f8f8cSSatish Balay Mat a,b,c,d; 1731ace3abfcSBarry Smith PetscBool flg; 1732dfbe8321SBarry Smith PetscErrorCode ierr; 1733a30f8f8cSSatish Balay 1734a30f8f8cSSatish Balay PetscFunctionBegin; 1735a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1736a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1737a30f8f8cSSatish Balay 1738a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1739abc0a331SBarry Smith if (flg) { 1740a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1741a30f8f8cSSatish Balay } 1742b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1743a30f8f8cSSatish Balay PetscFunctionReturn(0); 1744a30f8f8cSSatish Balay } 1745a30f8f8cSSatish Balay 17463c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 17473c896bc6SHong Zhang { 17483c896bc6SHong Zhang PetscErrorCode ierr; 17493c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 17503c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 17513c896bc6SHong Zhang 17523c896bc6SHong Zhang PetscFunctionBegin; 17533c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17543c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1755d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 17563c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1757d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 17583c896bc6SHong Zhang } else { 17593c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17603c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17613c896bc6SHong Zhang } 17623c896bc6SHong Zhang PetscFunctionReturn(0); 17633c896bc6SHong Zhang } 17643c896bc6SHong Zhang 17654994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1766273d9f13SBarry Smith { 1767dfbe8321SBarry Smith PetscErrorCode ierr; 1768273d9f13SBarry Smith 1769273d9f13SBarry Smith PetscFunctionBegin; 1770535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1771273d9f13SBarry Smith PetscFunctionReturn(0); 1772273d9f13SBarry Smith } 1773a5e6ed63SBarry Smith 17744fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17754fe895cdSHong Zhang { 17764fe895cdSHong Zhang PetscErrorCode ierr; 17774fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 17784fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17794fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 17804fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 17814fe895cdSHong Zhang 17824fe895cdSHong Zhang PetscFunctionBegin; 17834fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17844fe895cdSHong Zhang PetscScalar alpha = a; 17854fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 17864fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1787c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 17888b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 17894fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 17904fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1791c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 17928b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1793a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1794ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1795ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1796ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1797ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 17984fe895cdSHong Zhang } else { 17994de5dceeSHong Zhang Mat B; 18004de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18014de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1802d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 18034de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 18044de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 18054de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 18064de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 18074de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 18084de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 18094de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 18104de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 18114de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 18124de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 18134de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 18144de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 181528be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 18164de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 18174de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1818d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 18194de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 18204fe895cdSHong Zhang } 18214fe895cdSHong Zhang PetscFunctionReturn(0); 18224fe895cdSHong Zhang } 18234fe895cdSHong Zhang 18247dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1825a5e6ed63SBarry Smith { 18266849ba73SBarry Smith PetscErrorCode ierr; 18271302d50aSBarry Smith PetscInt i; 1828afebec48SHong Zhang PetscBool flg; 1829a5e6ed63SBarry Smith 18306849ba73SBarry Smith PetscFunctionBegin; 18317dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1832a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1833a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1834afebec48SHong Zhang if (!flg) { 1835b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1836a5e6ed63SBarry Smith } 18374dcd73b1SHong Zhang } 1838a5e6ed63SBarry Smith PetscFunctionReturn(0); 1839a5e6ed63SBarry Smith } 1840a5e6ed63SBarry Smith 18417d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 18427d68702bSBarry Smith { 18437d68702bSBarry Smith PetscErrorCode ierr; 18447d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 18456f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 18467d68702bSBarry Smith 18477d68702bSBarry Smith PetscFunctionBegin; 18486f33a894SBarry Smith if (!Y->preallocated) { 18497d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 18506f33a894SBarry Smith } else if (!aij->nz) { 1851b83222d8SBarry Smith PetscInt nonew = aij->nonew; 18526f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1853b83222d8SBarry Smith aij->nonew = nonew; 18547d68702bSBarry Smith } 18557d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 18567d68702bSBarry Smith PetscFunctionReturn(0); 18577d68702bSBarry Smith } 18587d68702bSBarry Smith 18593b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 18603b49f96aSBarry Smith { 18613b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 18623b49f96aSBarry Smith PetscErrorCode ierr; 18633b49f96aSBarry Smith 18643b49f96aSBarry Smith PetscFunctionBegin; 18653b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 18663b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 18673b49f96aSBarry Smith if (d) { 18683b49f96aSBarry Smith PetscInt rstart; 18693b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 18703b49f96aSBarry Smith *d += rstart/A->rmap->bs; 18713b49f96aSBarry Smith 18723b49f96aSBarry Smith } 18733b49f96aSBarry Smith PetscFunctionReturn(0); 18743b49f96aSBarry Smith } 18753b49f96aSBarry Smith 1876a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1877a5b7ff6bSBarry Smith { 1878a5b7ff6bSBarry Smith PetscFunctionBegin; 1879a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1880a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1881a5b7ff6bSBarry Smith } 18823b49f96aSBarry Smith 1883a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 18843964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1885a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1886a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1887a9d4b620SHong Zhang MatMult_MPISBAIJ, 188897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1889431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1890431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1891a30f8f8cSSatish Balay 0, 1892a30f8f8cSSatish Balay 0, 1893a30f8f8cSSatish Balay 0, 189497304618SKris Buschelman /* 10*/ 0, 1895a30f8f8cSSatish Balay 0, 1896a30f8f8cSSatish Balay 0, 189741f059aeSBarry Smith MatSOR_MPISBAIJ, 1898a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 189997304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1900a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1901a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1902a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1903a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 190497304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1905a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1906a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1907a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1908d519adbfSMatthew Knepley /* 24*/ 0, 1909a30f8f8cSSatish Balay 0, 1910a30f8f8cSSatish Balay 0, 1911a30f8f8cSSatish Balay 0, 1912a30f8f8cSSatish Balay 0, 19134994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1914b5df2d14SHong Zhang 0, 1915a30f8f8cSSatish Balay 0, 1916a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1917a30f8f8cSSatish Balay 0, 1918d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1919a30f8f8cSSatish Balay 0, 1920a30f8f8cSSatish Balay 0, 1921a30f8f8cSSatish Balay 0, 1922a30f8f8cSSatish Balay 0, 1923d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 19247dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1925d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1926a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 19273c896bc6SHong Zhang MatCopy_MPISBAIJ, 1928d519adbfSMatthew Knepley /* 44*/ 0, 1929a30f8f8cSSatish Balay MatScale_MPISBAIJ, 19307d68702bSBarry Smith MatShift_MPISBAIJ, 1931a30f8f8cSSatish Balay 0, 1932a30f8f8cSSatish Balay 0, 1933f73d5cc4SBarry Smith /* 49*/ 0, 1934a30f8f8cSSatish Balay 0, 1935a30f8f8cSSatish Balay 0, 1936a30f8f8cSSatish Balay 0, 1937a30f8f8cSSatish Balay 0, 1938d519adbfSMatthew Knepley /* 54*/ 0, 1939a30f8f8cSSatish Balay 0, 1940a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1941a30f8f8cSSatish Balay 0, 1942a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 19437dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1944a30f8f8cSSatish Balay 0, 1945a30f8f8cSSatish Balay 0, 1946357abbc8SBarry Smith 0, 194724d5174aSHong Zhang 0, 1948d519adbfSMatthew Knepley /* 64*/ 0, 194924d5174aSHong Zhang 0, 195024d5174aSHong Zhang 0, 195124d5174aSHong Zhang 0, 195224d5174aSHong Zhang 0, 1953d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 195424d5174aSHong Zhang 0, 195597304618SKris Buschelman 0, 195697304618SKris Buschelman 0, 195797304618SKris Buschelman 0, 1958d519adbfSMatthew Knepley /* 74*/ 0, 195997304618SKris Buschelman 0, 196097304618SKris Buschelman 0, 196197304618SKris Buschelman 0, 196297304618SKris Buschelman 0, 1963d519adbfSMatthew Knepley /* 79*/ 0, 196497304618SKris Buschelman 0, 196597304618SKris Buschelman 0, 196697304618SKris Buschelman 0, 19675bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1968d519adbfSMatthew Knepley /* 84*/ 0, 1969865e5f61SKris Buschelman 0, 1970865e5f61SKris Buschelman 0, 1971865e5f61SKris Buschelman 0, 1972865e5f61SKris Buschelman 0, 1973d519adbfSMatthew Knepley /* 89*/ 0, 1974865e5f61SKris Buschelman 0, 1975865e5f61SKris Buschelman 0, 1976865e5f61SKris Buschelman 0, 1977865e5f61SKris Buschelman 0, 1978d519adbfSMatthew Knepley /* 94*/ 0, 1979865e5f61SKris Buschelman 0, 1980865e5f61SKris Buschelman 0, 198199cafbc1SBarry Smith 0, 198299cafbc1SBarry Smith 0, 1983d519adbfSMatthew Knepley /* 99*/ 0, 198499cafbc1SBarry Smith 0, 198599cafbc1SBarry Smith 0, 198699cafbc1SBarry Smith 0, 198799cafbc1SBarry Smith 0, 1988d519adbfSMatthew Knepley /*104*/ 0, 198999cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1990d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1991d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 199295936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 199395936485SShri Abhyankar /*109*/ 0, 199495936485SShri Abhyankar 0, 199595936485SShri Abhyankar 0, 199695936485SShri Abhyankar 0, 19973b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 199895936485SShri Abhyankar /*114*/ 0, 199995936485SShri Abhyankar 0, 200095936485SShri Abhyankar 0, 200195936485SShri Abhyankar 0, 200295936485SShri Abhyankar 0, 200395936485SShri Abhyankar /*119*/ 0, 200495936485SShri Abhyankar 0, 200595936485SShri Abhyankar 0, 20063964eb88SJed Brown 0, 20073964eb88SJed Brown 0, 20083964eb88SJed Brown /*124*/ 0, 20093964eb88SJed Brown 0, 20103964eb88SJed Brown 0, 20113964eb88SJed Brown 0, 20123964eb88SJed Brown 0, 20133964eb88SJed Brown /*129*/ 0, 20143964eb88SJed Brown 0, 20153964eb88SJed Brown 0, 20163964eb88SJed Brown 0, 20173964eb88SJed Brown 0, 20183964eb88SJed Brown /*134*/ 0, 20193964eb88SJed Brown 0, 20203964eb88SJed Brown 0, 20213964eb88SJed Brown 0, 20223964eb88SJed Brown 0, 202346533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2024f9426fe0SMark Adams 0, 202559f5e6ceSHong Zhang 0, 202659f5e6ceSHong Zhang 0, 202759f5e6ceSHong Zhang 0, 202859f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 202999cafbc1SBarry Smith }; 2030a30f8f8cSSatish Balay 2031b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2032a23d5eceSKris Buschelman { 2033a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 2034dfbe8321SBarry Smith PetscErrorCode ierr; 2035535b19f3SBarry Smith PetscInt i,mbs,Mbs; 2036a23d5eceSKris Buschelman 2037a23d5eceSKris Buschelman PetscFunctionBegin; 203833d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 203926283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 204026283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2041e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2042899cda47SBarry Smith 2043a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 2044d0f46423SBarry Smith mbs = B->rmap->n/bs; 2045d0f46423SBarry Smith Mbs = B->rmap->N/bs; 2046c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 2047a23d5eceSKris Buschelman 2048d0f46423SBarry Smith B->rmap->bs = bs; 2049a23d5eceSKris Buschelman b->bs2 = bs*bs; 2050a23d5eceSKris Buschelman b->mbs = mbs; 2051a23d5eceSKris Buschelman b->Mbs = Mbs; 2052de64b629SHong Zhang b->nbs = B->cmap->n/bs; 2053de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 2054a23d5eceSKris Buschelman 2055a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2056d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2057a23d5eceSKris Buschelman } 2058d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2059d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2060a23d5eceSKris Buschelman 2061d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2062d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2063a23d5eceSKris Buschelman 2064cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2065cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2066cb7b82ddSBarry Smith #else 2067cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2068cb7b82ddSBarry Smith #endif 2069cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2070cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2071cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2072cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 2073cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 2074cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 2075cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 2076cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 2077cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 2078cb7b82ddSBarry Smith 2079cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 2080cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2081cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2082cb7b82ddSBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 2083cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2084cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2085cb7b82ddSBarry Smith 2086526dfc15SBarry Smith if (!B->preallocated) { 2087f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2088d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 20899c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 20903bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2091ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2092526dfc15SBarry Smith } 2093a23d5eceSKris Buschelman 2094526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2095526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 209626fbe8dcSKarl Rupp 2097526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2098cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2099cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2100a23d5eceSKris Buschelman PetscFunctionReturn(0); 2101a23d5eceSKris Buschelman } 2102a23d5eceSKris Buschelman 2103dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2104dfb205c3SBarry Smith { 2105dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 2106dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2107dfb205c3SBarry Smith const PetscInt *JJ =0; 2108dfb205c3SBarry Smith PetscScalar *values=0; 2109dfb205c3SBarry Smith PetscErrorCode ierr; 2110dfb205c3SBarry Smith 2111dfb205c3SBarry Smith PetscFunctionBegin; 2112ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2113dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2114dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2115dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2116dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2117e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2118dfb205c3SBarry Smith m = B->rmap->n/bs; 2119dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2120dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 2121dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2122dfb205c3SBarry Smith 2123dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2124dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2125dfb205c3SBarry Smith for (i=0; i<m; i++) { 2126dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2127dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2128dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 2129dfb205c3SBarry Smith JJ = jj + ii[i]; 2130dfb205c3SBarry Smith for (j=0; j<nz; j++) { 2131dfb205c3SBarry Smith if (*JJ >= cstart) break; 2132dfb205c3SBarry Smith JJ++; 2133dfb205c3SBarry Smith } 2134dfb205c3SBarry Smith d = 0; 2135dfb205c3SBarry Smith for (; j<nz; j++) { 2136dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2137dfb205c3SBarry Smith d++; 2138dfb205c3SBarry Smith } 2139dfb205c3SBarry Smith d_nnz[i] = d; 2140dfb205c3SBarry Smith o_nnz[i] = nz - d; 2141dfb205c3SBarry Smith } 2142dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2143dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2144dfb205c3SBarry Smith 2145dfb205c3SBarry Smith values = (PetscScalar*)V; 2146dfb205c3SBarry Smith if (!values) { 2147785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2148dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2149dfb205c3SBarry Smith } 2150dfb205c3SBarry Smith for (i=0; i<m; i++) { 2151dfb205c3SBarry Smith PetscInt row = i + rstart; 2152dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2153dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2154dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2155dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2156dfb205c3SBarry Smith } 2157dfb205c3SBarry Smith 2158dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2159dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2160dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 21617827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2162dfb205c3SBarry Smith PetscFunctionReturn(0); 2163dfb205c3SBarry Smith } 2164dfb205c3SBarry Smith 21650bad9183SKris Buschelman /*MC 2166fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2167828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2168828413b8SBarry Smith the matrix is stored. 2169828413b8SBarry Smith 2170828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2171828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 21720bad9183SKris Buschelman 21730bad9183SKris Buschelman Options Database Keys: 21740bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 21750bad9183SKris Buschelman 21760bad9183SKris Buschelman Level: beginner 21770bad9183SKris Buschelman 21780bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 21790bad9183SKris Buschelman M*/ 21800bad9183SKris Buschelman 2181cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 2182aa5a9175SDahai Guo 21838cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2184b5df2d14SHong Zhang { 2185b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2186dfbe8321SBarry Smith PetscErrorCode ierr; 218794ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2188b5df2d14SHong Zhang 2189b5df2d14SHong Zhang PetscFunctionBegin; 2190b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2191b0a32e0cSBarry Smith B->data = (void*)b; 2192b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2193b5df2d14SHong Zhang 2194b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2195b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2196b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2197b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 219826fbe8dcSKarl Rupp 2199ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2200ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2201b5df2d14SHong Zhang 2202b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2203854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2204b5df2d14SHong Zhang 2205b5df2d14SHong Zhang /* build cache for off array entries formed */ 2206ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 220726fbe8dcSKarl Rupp 2208b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 22090298fd71SBarry Smith b->colmap = NULL; 22100298fd71SBarry Smith b->garray = NULL; 2211b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2212b5df2d14SHong Zhang 2213b5df2d14SHong Zhang /* stuff used in block assembly */ 2214b5df2d14SHong Zhang b->barray = 0; 2215b5df2d14SHong Zhang 2216b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2217b5df2d14SHong Zhang b->lvec = 0; 2218b5df2d14SHong Zhang b->Mvctx = 0; 221940781036SHong Zhang b->slvec0 = 0; 222040781036SHong Zhang b->slvec0b = 0; 222140781036SHong Zhang b->slvec1 = 0; 222240781036SHong Zhang b->slvec1a = 0; 222340781036SHong Zhang b->slvec1b = 0; 222440781036SHong Zhang b->sMvctx = 0; 2225b5df2d14SHong Zhang 2226b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2227b5df2d14SHong Zhang b->rowindices = 0; 2228b5df2d14SHong Zhang b->rowvalues = 0; 2229b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2230b5df2d14SHong Zhang 2231b5df2d14SHong Zhang /* hash table stuff */ 2232b5df2d14SHong Zhang b->ht = 0; 2233b5df2d14SHong Zhang b->hd = 0; 2234b5df2d14SHong Zhang b->ht_size = 0; 2235b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2236b5df2d14SHong Zhang b->ht_fact = 0; 2237b5df2d14SHong Zhang b->ht_total_ct = 0; 2238b5df2d14SHong Zhang b->ht_insert_ct = 0; 2239b5df2d14SHong Zhang 22407dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 22417a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 22427a868f3eSHong Zhang 224359ffdab8SBarry Smith b->in_loc = 0; 224459ffdab8SBarry Smith b->v_loc = 0; 224559ffdab8SBarry Smith b->n_loc = 0; 224694ae4db5SBarry Smith 2247bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2248bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2249bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2250bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 22516214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 22526214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 22536214f412SHong Zhang #endif 2254aa5a9175SDahai Guo 225523ce1328SBarry Smith B->symmetric = PETSC_TRUE; 225623ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 225723ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 225823ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 225926fbe8dcSKarl Rupp 226017667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 226194ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 226294ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 226394ae4db5SBarry Smith if (flg) { 226494ae4db5SBarry Smith PetscReal fact = 1.39; 226594ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 226694ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 226794ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 226894ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 226994ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 227094ae4db5SBarry Smith } 227194ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2272b5df2d14SHong Zhang PetscFunctionReturn(0); 2273b5df2d14SHong Zhang } 2274b5df2d14SHong Zhang 2275209238afSKris Buschelman /*MC 2276002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2277209238afSKris Buschelman 2278209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2279209238afSKris Buschelman and MATMPISBAIJ otherwise. 2280209238afSKris Buschelman 2281209238afSKris Buschelman Options Database Keys: 2282209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2283209238afSKris Buschelman 2284209238afSKris Buschelman Level: beginner 2285209238afSKris Buschelman 2286209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2287209238afSKris Buschelman M*/ 2288209238afSKris Buschelman 2289b5df2d14SHong Zhang /*@C 2290b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2291b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2292b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2293b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2294b5df2d14SHong Zhang 2295b5df2d14SHong Zhang Collective on Mat 2296b5df2d14SHong Zhang 2297b5df2d14SHong Zhang Input Parameters: 22981c4f3114SJed Brown + B - the matrix 2299bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2300bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2301b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2302b5df2d14SHong Zhang submatrix (same for all local rows) 2303b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 23046d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 23050298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 230695742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2307b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2308b5df2d14SHong Zhang submatrix (same for all local rows). 2309b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2310c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 23110298fd71SBarry Smith (possibly different for each block row) or NULL. 2312b5df2d14SHong Zhang 2313b5df2d14SHong Zhang 2314b5df2d14SHong Zhang Options Database Keys: 2315b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2316b5df2d14SHong Zhang block calculations (much slower) 2317b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 2318b5df2d14SHong Zhang 2319b5df2d14SHong Zhang Notes: 2320b5df2d14SHong Zhang 2321b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2322b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2323b5df2d14SHong Zhang 232449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 232549a6f317SBarry Smith 2326b5df2d14SHong Zhang Storage Information: 2327b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2328b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2329b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2330b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2331b5df2d14SHong Zhang 2332b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2333b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 23340298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2335b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2336b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2337b5df2d14SHong Zhang 2338aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2339aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2340aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2341aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2342aa95bbe8SBarry Smith 2343b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2344b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2345b5df2d14SHong Zhang 2346b5df2d14SHong Zhang .vb 2347b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2348a4b1a0f6SJed Brown -------------------------- 2349c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2350c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2351c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2352a4b1a0f6SJed Brown -------------------------- 2353b5df2d14SHong Zhang .ve 2354b5df2d14SHong Zhang 2355b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2356b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 23576d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23586d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2359b5df2d14SHong Zhang 23606d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23616d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2362c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2363c2fc9fa9SBarry Smith 2364b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2365b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2366b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2367b5df2d14SHong Zhang matrices. 2368b5df2d14SHong Zhang 2369b5df2d14SHong Zhang Level: intermediate 2370b5df2d14SHong Zhang 2371b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2372b5df2d14SHong Zhang 2373ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2374b5df2d14SHong Zhang @*/ 23757087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2376b5df2d14SHong Zhang { 23774ac538c5SBarry Smith PetscErrorCode ierr; 2378b5df2d14SHong Zhang 2379b5df2d14SHong Zhang PetscFunctionBegin; 23806ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 23816ba663aaSJed Brown PetscValidType(B,1); 23826ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 23834ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2384b5df2d14SHong Zhang PetscFunctionReturn(0); 2385b5df2d14SHong Zhang } 2386b5df2d14SHong Zhang 2387a30f8f8cSSatish Balay /*@C 238869b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2389a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2390a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2391a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2392a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2393a30f8f8cSSatish Balay 2394a30f8f8cSSatish Balay Collective on MPI_Comm 2395a30f8f8cSSatish Balay 2396a30f8f8cSSatish Balay Input Parameters: 2397a30f8f8cSSatish Balay + comm - MPI communicator 2398bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2399bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2400a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2401a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2402a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2403a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2404a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2405a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2406a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2407a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2408a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2409a30f8f8cSSatish Balay submatrix (same for all local rows) 2410a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 24116d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 24120298fd71SBarry Smith (possibly different for each block block row) or NULL. 241395742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 241495742e49SBarry Smith set its value even if it is zero. 2415a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2416a30f8f8cSSatish Balay submatrix (same for all local rows). 2417a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2418a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 24190298fd71SBarry Smith each block row) or NULL. 2420a30f8f8cSSatish Balay 2421a30f8f8cSSatish Balay Output Parameter: 2422a30f8f8cSSatish Balay . A - the matrix 2423a30f8f8cSSatish Balay 2424a30f8f8cSSatish Balay Options Database Keys: 2425a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2426a30f8f8cSSatish Balay block calculations (much slower) 2427a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2428a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2429a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2430a30f8f8cSSatish Balay 2431175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2432ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2433175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2434175b88e8SBarry Smith 2435a30f8f8cSSatish Balay Notes: 2436d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 24376d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2438d1be2dadSMatthew Knepley 2439a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2440a30f8f8cSSatish Balay (possibly both). 2441a30f8f8cSSatish Balay 2442a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2443a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2444a30f8f8cSSatish Balay 244549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 244649a6f317SBarry Smith 2447a30f8f8cSSatish Balay Storage Information: 2448a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2449a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2450a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2451a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2452a30f8f8cSSatish Balay 2453a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2454a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 24550298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2456a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2457a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2458a30f8f8cSSatish Balay 2459a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2460a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2461a30f8f8cSSatish Balay 2462a30f8f8cSSatish Balay .vb 2463a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2464a4b1a0f6SJed Brown -------------------------- 2465c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2466c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2467c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2468a4b1a0f6SJed Brown -------------------------- 2469a30f8f8cSSatish Balay .ve 2470a30f8f8cSSatish Balay 2471a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2472a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24736d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24746d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2475a30f8f8cSSatish Balay 24766d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 24776d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2478a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2479a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2480a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2481a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2482a30f8f8cSSatish Balay matrices. 2483a30f8f8cSSatish Balay 2484a30f8f8cSSatish Balay Level: intermediate 2485a30f8f8cSSatish Balay 2486a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2487a30f8f8cSSatish Balay 248869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2489a30f8f8cSSatish Balay @*/ 2490a30f8f8cSSatish Balay 249169b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2492a30f8f8cSSatish Balay { 24936849ba73SBarry Smith PetscErrorCode ierr; 24941302d50aSBarry Smith PetscMPIInt size; 2495a30f8f8cSSatish Balay 2496a30f8f8cSSatish Balay PetscFunctionBegin; 2497f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2498f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2499273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2500273d9f13SBarry Smith if (size > 1) { 2501b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2502b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2503273d9f13SBarry Smith } else { 2504273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2505273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2506273d9f13SBarry Smith } 2507a30f8f8cSSatish Balay PetscFunctionReturn(0); 2508a30f8f8cSSatish Balay } 2509a30f8f8cSSatish Balay 2510a30f8f8cSSatish Balay 25116849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2512a30f8f8cSSatish Balay { 2513a30f8f8cSSatish Balay Mat mat; 2514a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2515dfbe8321SBarry Smith PetscErrorCode ierr; 2516d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2517387bc808SHong Zhang PetscScalar *array; 2518a30f8f8cSSatish Balay 2519a30f8f8cSSatish Balay PetscFunctionBegin; 2520a30f8f8cSSatish Balay *newmat = 0; 252126fbe8dcSKarl Rupp 2522ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2523d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 25247adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 25251d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 25261e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 25271e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2528e1b6402fSHong Zhang 2529d5f3da31SBarry Smith mat->factortype = matin->factortype; 2530273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 253182327fa8SHong Zhang mat->assembled = PETSC_TRUE; 25327fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 25337fff6886SHong Zhang 2534b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2535a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2536a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2537a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2538a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2539a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2540a30f8f8cSSatish Balay 2541899cda47SBarry Smith 2542a30f8f8cSSatish Balay a->size = oldmat->size; 2543a30f8f8cSSatish Balay a->rank = oldmat->rank; 2544a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2545a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2546a30f8f8cSSatish Balay a->rowindices = 0; 2547a30f8f8cSSatish Balay a->rowvalues = 0; 2548a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2549a30f8f8cSSatish Balay a->barray = 0; 2550899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2551899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2552899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2553899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2554a30f8f8cSSatish Balay 2555a30f8f8cSSatish Balay /* hash table stuff */ 2556a30f8f8cSSatish Balay a->ht = 0; 2557a30f8f8cSSatish Balay a->hd = 0; 2558a30f8f8cSSatish Balay a->ht_size = 0; 2559a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2560a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2561a30f8f8cSSatish Balay a->ht_total_ct = 0; 2562a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2563a30f8f8cSSatish Balay 2564899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2565a30f8f8cSSatish Balay if (oldmat->colmap) { 2566a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2567a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2568a30f8f8cSSatish Balay #else 2569854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 25703bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 25711302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2572a30f8f8cSSatish Balay #endif 2573a30f8f8cSSatish Balay } else a->colmap = 0; 2574387bc808SHong Zhang 2575a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2576785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 25773bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 25781302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2579a30f8f8cSSatish Balay } else a->garray = 0; 2580a30f8f8cSSatish Balay 2581ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2582a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 25833bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2584a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 25853bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 258682327fa8SHong Zhang 258782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 25883bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 258982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 25903bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2591387bc808SHong Zhang 2592387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 25931ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2594778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2595778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 25961ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 25971ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2598778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 25991ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 26003bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 26013bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 26023bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 26033bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 26043bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2605387bc808SHong Zhang 2606387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2607387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2608387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 26093bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 261082327fa8SHong Zhang 2611a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 26123bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2613a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 26143bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2615140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2616a30f8f8cSSatish Balay *newmat = mat; 2617a30f8f8cSSatish Balay PetscFunctionReturn(0); 2618a30f8f8cSSatish Balay } 2619a30f8f8cSSatish Balay 2620112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 262195936485SShri Abhyankar { 262295936485SShri Abhyankar PetscErrorCode ierr; 262395936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 262495936485SShri Abhyankar PetscScalar *vals,*buf; 2625ce94432eSBarry Smith MPI_Comm comm; 262695936485SShri Abhyankar MPI_Status status; 2627adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2628adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 262995936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 26303059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 263195936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2632461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 263395936485SShri Abhyankar int fd; 263495936485SShri Abhyankar 263595936485SShri Abhyankar PetscFunctionBegin; 2636c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2637c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2638ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 26390298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 26400298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 264195936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 26423059b6faSBarry Smith if (bs < 0) bs = 1; 264395936485SShri Abhyankar 264495936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 264595936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 264695936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 26475872f025SBarry Smith if (!rank) { 264895936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 264995936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 265002f61395SBarry Smith if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 265195936485SShri Abhyankar } 265295936485SShri Abhyankar 265395936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 265426fbe8dcSKarl Rupp M = header[1]; 265526fbe8dcSKarl Rupp N = header[2]; 265695936485SShri Abhyankar 265795936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2658461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2659461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 266095936485SShri Abhyankar 266195936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 266295936485SShri Abhyankar 266395936485SShri Abhyankar /* 266495936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 266595936485SShri Abhyankar divisible by the blocksize 266695936485SShri Abhyankar */ 266795936485SShri Abhyankar Mbs = M/bs; 266895936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 266995936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 267095936485SShri Abhyankar else Mbs++; 267195936485SShri Abhyankar if (extra_rows &&!rank) { 267295936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 267395936485SShri Abhyankar } 267495936485SShri Abhyankar 267595936485SShri Abhyankar /* determine ownership of all rows */ 267695936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 267795936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 267895936485SShri Abhyankar m = mbs*bs; 267995936485SShri Abhyankar } else { /* User Set */ 268095936485SShri Abhyankar m = newmat->rmap->n; 268195936485SShri Abhyankar mbs = m/bs; 268295936485SShri Abhyankar } 2683dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 26844dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 268595936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 268695936485SShri Abhyankar rowners[0] = 0; 268795936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 268895936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 268995936485SShri Abhyankar rstart = rowners[rank]; 269095936485SShri Abhyankar rend = rowners[rank+1]; 269195936485SShri Abhyankar 269295936485SShri Abhyankar /* distribute row lengths to all processors */ 2693785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 269495936485SShri Abhyankar if (!rank) { 2695854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 269695936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 269795936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2698785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 269995936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 270095936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 270195936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 270295936485SShri Abhyankar } else { 270395936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 270495936485SShri Abhyankar } 270595936485SShri Abhyankar 270695936485SShri Abhyankar if (!rank) { /* procs[0] */ 270795936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2708785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 270995936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 271095936485SShri Abhyankar for (i=0; i<size; i++) { 271195936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 271295936485SShri Abhyankar procsnz[i] += rowlengths[j]; 271395936485SShri Abhyankar } 271495936485SShri Abhyankar } 271595936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 271695936485SShri Abhyankar 271795936485SShri Abhyankar /* determine max buffer needed and allocate it */ 271895936485SShri Abhyankar maxnz = 0; 271995936485SShri Abhyankar for (i=0; i<size; i++) { 272095936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 272195936485SShri Abhyankar } 2722785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 272395936485SShri Abhyankar 272495936485SShri Abhyankar /* read in my part of the matrix column indices */ 272595936485SShri Abhyankar nz = procsnz[0]; 2726785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 272795936485SShri Abhyankar mycols = ibuf; 272895936485SShri Abhyankar if (size == 1) nz -= extra_rows; 272995936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 273026fbe8dcSKarl Rupp if (size == 1) { 273126fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 273226fbe8dcSKarl Rupp } 273395936485SShri Abhyankar 273495936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 273595936485SShri Abhyankar for (i=1; i<size-1; i++) { 273695936485SShri Abhyankar nz = procsnz[i]; 273795936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 273895936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 273995936485SShri Abhyankar } 274095936485SShri Abhyankar /* read in the stuff for the last proc */ 274195936485SShri Abhyankar if (size != 1) { 274295936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 274395936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 274495936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 274595936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 274695936485SShri Abhyankar } 274795936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 274895936485SShri Abhyankar } else { /* procs[i], i>0 */ 274995936485SShri Abhyankar /* determine buffer space needed for message */ 275095936485SShri Abhyankar nz = 0; 275126fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2752785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 275395936485SShri Abhyankar mycols = ibuf; 275495936485SShri Abhyankar /* receive message of column indices*/ 275595936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 275695936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 275795936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 275895936485SShri Abhyankar } 275995936485SShri Abhyankar 276095936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2761dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2762dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 276395936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 276495936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 276595936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 276695936485SShri Abhyankar rowcount = 0; 276795936485SShri Abhyankar nzcount = 0; 276895936485SShri Abhyankar for (i=0; i<mbs; i++) { 276995936485SShri Abhyankar dcount = 0; 277095936485SShri Abhyankar odcount = 0; 277195936485SShri Abhyankar for (j=0; j<bs; j++) { 277295936485SShri Abhyankar kmax = locrowlens[rowcount]; 277395936485SShri Abhyankar for (k=0; k<kmax; k++) { 277495936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 277595936485SShri Abhyankar if (!mask[tmp]) { 277695936485SShri Abhyankar mask[tmp] = 1; 277795936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 277895936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 277995936485SShri Abhyankar } 278095936485SShri Abhyankar } 278195936485SShri Abhyankar rowcount++; 278295936485SShri Abhyankar } 278395936485SShri Abhyankar 278495936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 278595936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 278695936485SShri Abhyankar 278795936485SShri Abhyankar /* zero out the mask elements we set */ 278895936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 278995936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 279095936485SShri Abhyankar } 279195936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 279295936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 27936816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 279495936485SShri Abhyankar 279595936485SShri Abhyankar if (!rank) { 2796785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 279795936485SShri Abhyankar /* read in my part of the matrix numerical values */ 279895936485SShri Abhyankar nz = procsnz[0]; 279995936485SShri Abhyankar vals = buf; 280095936485SShri Abhyankar mycols = ibuf; 280195936485SShri Abhyankar if (size == 1) nz -= extra_rows; 280295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 280326fbe8dcSKarl Rupp if (size == 1) { 280426fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 280526fbe8dcSKarl Rupp } 280695936485SShri Abhyankar 280795936485SShri Abhyankar /* insert into matrix */ 280895936485SShri Abhyankar jj = rstart*bs; 280995936485SShri Abhyankar for (i=0; i<m; i++) { 281095936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 281195936485SShri Abhyankar mycols += locrowlens[i]; 281295936485SShri Abhyankar vals += locrowlens[i]; 281395936485SShri Abhyankar jj++; 281495936485SShri Abhyankar } 281595936485SShri Abhyankar 281695936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 281795936485SShri Abhyankar for (i=1; i<size-1; i++) { 281895936485SShri Abhyankar nz = procsnz[i]; 281995936485SShri Abhyankar vals = buf; 282095936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 282195936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 282295936485SShri Abhyankar } 282395936485SShri Abhyankar /* the last proc */ 282495936485SShri Abhyankar if (size != 1) { 282595936485SShri Abhyankar nz = procsnz[i] - extra_rows; 282695936485SShri Abhyankar vals = buf; 282795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 282895936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 282995936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 283095936485SShri Abhyankar } 283195936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 283295936485SShri Abhyankar 283395936485SShri Abhyankar } else { 283495936485SShri Abhyankar /* receive numeric values */ 2835785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 283695936485SShri Abhyankar 283795936485SShri Abhyankar /* receive message of values*/ 283895936485SShri Abhyankar vals = buf; 283995936485SShri Abhyankar mycols = ibuf; 284095936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 284195936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 284295936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 284395936485SShri Abhyankar 284495936485SShri Abhyankar /* insert into matrix */ 284595936485SShri Abhyankar jj = rstart*bs; 284695936485SShri Abhyankar for (i=0; i<m; i++) { 284795936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 284895936485SShri Abhyankar mycols += locrowlens[i]; 284995936485SShri Abhyankar vals += locrowlens[i]; 285095936485SShri Abhyankar jj++; 285195936485SShri Abhyankar } 285295936485SShri Abhyankar } 285395936485SShri Abhyankar 285495936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 285595936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 285695936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 285795936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 285895936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 285995936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 286095936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 286195936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 286295936485SShri Abhyankar PetscFunctionReturn(0); 286395936485SShri Abhyankar } 286495936485SShri Abhyankar 2865dcf5cc72SBarry Smith /*XXXXX@ 2866a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2867a30f8f8cSSatish Balay 2868a30f8f8cSSatish Balay Input Parameters: 2869a30f8f8cSSatish Balay . mat - the matrix 2870a30f8f8cSSatish Balay . fact - factor 2871a30f8f8cSSatish Balay 2872c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2873a30f8f8cSSatish Balay 2874a30f8f8cSSatish Balay Level: advanced 2875a30f8f8cSSatish Balay 2876a30f8f8cSSatish Balay Notes: 2877a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2878a30f8f8cSSatish Balay 2879a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2880a30f8f8cSSatish Balay 2881a30f8f8cSSatish Balay .seealso: MatSetOption() 2882dcf5cc72SBarry Smith @XXXXX*/ 2883dcf5cc72SBarry Smith 288424d5174aSHong Zhang 2885985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 288624d5174aSHong Zhang { 288724d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2888f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2889ca54ac64SHong Zhang PetscReal atmp; 289087828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2891dfbe8321SBarry Smith PetscErrorCode ierr; 28921302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 28931302d50aSBarry Smith PetscMPIInt rank,size; 28941302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 289587828ca2SBarry Smith PetscScalar *va; 28968a1c53f2SBarry Smith MatScalar *ba; 2897f4c0e9e4SHong Zhang MPI_Status stat; 289824d5174aSHong Zhang 289924d5174aSHong Zhang PetscFunctionBegin; 2900e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 29010298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 29021ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2903f4c0e9e4SHong Zhang 2904ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2905ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2906f4c0e9e4SHong Zhang 2907d0f46423SBarry Smith bs = A->rmap->bs; 2908f4c0e9e4SHong Zhang mbs = a->mbs; 2909f4c0e9e4SHong Zhang Mbs = a->Mbs; 2910f4c0e9e4SHong Zhang ba = b->a; 2911f4c0e9e4SHong Zhang bi = b->i; 2912f4c0e9e4SHong Zhang bj = b->j; 2913f4c0e9e4SHong Zhang 2914f4c0e9e4SHong Zhang /* find ownerships */ 2915d0f46423SBarry Smith rowners_bs = A->rmap->range; 2916f4c0e9e4SHong Zhang 2917f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2918785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2919ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2920f4c0e9e4SHong Zhang 2921f4c0e9e4SHong Zhang /* row_max for B */ 2922b8475685SHong Zhang if (rank != size-1) { 2923f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2924f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2925f4c0e9e4SHong Zhang brow = bs*i; 2926f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2927f4c0e9e4SHong Zhang bcol = bs*(*bj); 2928f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2929ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 293004d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2931f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2932f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2933ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2934ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2935f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2936f4c0e9e4SHong Zhang } 2937f4c0e9e4SHong Zhang } 2938f4c0e9e4SHong Zhang bj++; 2939f4c0e9e4SHong Zhang } 2940f4c0e9e4SHong Zhang } 2941f4c0e9e4SHong Zhang 2942f4c0e9e4SHong Zhang /* send values to its owners */ 2943f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2944f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2945ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2946ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2947ca54ac64SHong Zhang } 2948f4c0e9e4SHong Zhang } 2949f4c0e9e4SHong Zhang 2950f4c0e9e4SHong Zhang /* receive values */ 2951ca54ac64SHong Zhang if (rank) { 2952f4c0e9e4SHong Zhang rvalues = work; 2953ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2954f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2955ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2956f4c0e9e4SHong Zhang /* process values */ 2957f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2958ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2959f4c0e9e4SHong Zhang } 2960f4c0e9e4SHong Zhang } 2961ca54ac64SHong Zhang } 2962f4c0e9e4SHong Zhang 29631ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2964ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 296524d5174aSHong Zhang PetscFunctionReturn(0); 296624d5174aSHong Zhang } 29672798e883SHong Zhang 296841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 29692798e883SHong Zhang { 29702798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2971dfbe8321SBarry Smith PetscErrorCode ierr; 2972d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 29733649974fSBarry Smith PetscScalar *x,*ptr,*from; 2974ffe4fb16SHong Zhang Vec bb1; 29753649974fSBarry Smith const PetscScalar *b; 2976ffe4fb16SHong Zhang 2977ffe4fb16SHong Zhang PetscFunctionBegin; 2978e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2979e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2980ffe4fb16SHong Zhang 2981a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 298241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2983a2b30743SBarry Smith PetscFunctionReturn(0); 2984a2b30743SBarry Smith } 2985a2b30743SBarry Smith 2986ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2987ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 298841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2989ffe4fb16SHong Zhang its--; 2990ffe4fb16SHong Zhang } 2991ffe4fb16SHong Zhang 2992ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2993ffe4fb16SHong Zhang while (its--) { 2994ffe4fb16SHong Zhang 2995ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2996ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2997ffe4fb16SHong Zhang 2998ffe4fb16SHong Zhang /* copy xx into slvec0a */ 29991ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 30001ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3001ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 30021ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 3003ffe4fb16SHong Zhang 3004efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 3005ffe4fb16SHong Zhang 3006ffe4fb16SHong Zhang /* copy bb into slvec1a */ 30071ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 30083649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 3009ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 30101ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 3011ffe4fb16SHong Zhang 3012ffe4fb16SHong Zhang /* set slvec1b = 0 */ 3013fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3014ffe4fb16SHong Zhang 3015ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30161ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3017a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 3018ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3019ffe4fb16SHong Zhang 3020ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 3021ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 3022ffe4fb16SHong Zhang 3023ffe4fb16SHong Zhang /* local diagonal sweep */ 302441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 3025ffe4fb16SHong Zhang } 30266bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 3027fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 302841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3029fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 303041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3031fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 3032fa22f6d0SBarry Smith Vec xx1; 3033ace3abfcSBarry Smith PetscBool hasop; 303420f1ed55SBarry Smith const PetscScalar *diag; 3035887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 303620f1ed55SBarry Smith PetscInt i,n; 3037fa22f6d0SBarry Smith 3038fa22f6d0SBarry Smith if (!mat->xx1) { 3039fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 3040fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 3041fa22f6d0SBarry Smith } 3042fa22f6d0SBarry Smith xx1 = mat->xx1; 3043fa22f6d0SBarry Smith bb1 = mat->bb1; 3044fa22f6d0SBarry Smith 304541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 3046fa22f6d0SBarry Smith 3047fa22f6d0SBarry Smith if (!mat->diag) { 3048effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 30492a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 3050fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 3051fa22f6d0SBarry Smith } 3052fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 3053fa22f6d0SBarry Smith 3054fa22f6d0SBarry Smith if (hasop) { 3055fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 3056887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 305720f1ed55SBarry Smith } else { 305820f1ed55SBarry Smith /* 305920f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 306020f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 3061887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 306220f1ed55SBarry Smith */ 306320f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 30643649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 30653649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 306620f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 306720f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 3068887ee2caSBarry Smith if (omega == 1.0) { 306926fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 307020f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 3071887ee2caSBarry Smith } else { 307226fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 3073887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 3074887ee2caSBarry Smith } 307520f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 30763649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 30773649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 307820f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 307920f1ed55SBarry Smith } 3080fa22f6d0SBarry Smith 3081fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 3082fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3083fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3084fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 3085fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3086fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 3087fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 3088fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3089fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3090fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3091effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 3092fa22f6d0SBarry Smith 3093fa22f6d0SBarry Smith /* local sweep */ 309441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 3095fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 3096f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 3097ffe4fb16SHong Zhang PetscFunctionReturn(0); 3098ffe4fb16SHong Zhang } 3099ffe4fb16SHong Zhang 310041f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 3101ffe4fb16SHong Zhang { 3102ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3103dfbe8321SBarry Smith PetscErrorCode ierr; 31042798e883SHong Zhang Vec lvec1,bb1; 31052798e883SHong Zhang 31062798e883SHong Zhang PetscFunctionBegin; 3107e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3108e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 31092798e883SHong Zhang 3110c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 31112798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 311241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 31132798e883SHong Zhang its--; 31142798e883SHong Zhang } 31152798e883SHong Zhang 31162798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 31172798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 31182798e883SHong Zhang while (its--) { 3119ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 31202798e883SHong Zhang 31212798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 31222798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3123efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 31242798e883SHong Zhang 3125ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 31262798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3127ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 31282798e883SHong Zhang 31292798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3130efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 31312798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 31322798e883SHong Zhang 3133ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 31342798e883SHong Zhang 3135c14dc6b6SHong Zhang /* diagonal sweep */ 313641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 31372798e883SHong Zhang } 31386bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 31396bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 31406bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 31412798e883SHong Zhang PetscFunctionReturn(0); 31422798e883SHong Zhang } 31432798e883SHong Zhang 3144dfb205c3SBarry Smith /*@ 3145dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3146dfb205c3SBarry Smith CSR format the local rows. 3147dfb205c3SBarry Smith 3148dfb205c3SBarry Smith Collective on MPI_Comm 3149dfb205c3SBarry Smith 3150dfb205c3SBarry Smith Input Parameters: 3151dfb205c3SBarry Smith + comm - MPI communicator 3152dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3153dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3154dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3155dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3156dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3157dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3158dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3159dfb205c3SBarry Smith . i - row indices 3160dfb205c3SBarry Smith . j - column indices 3161dfb205c3SBarry Smith - a - matrix values 3162dfb205c3SBarry Smith 3163dfb205c3SBarry Smith Output Parameter: 3164dfb205c3SBarry Smith . mat - the matrix 3165dfb205c3SBarry Smith 3166dfb205c3SBarry Smith Level: intermediate 3167dfb205c3SBarry Smith 3168dfb205c3SBarry Smith Notes: 3169dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3170dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3171dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3172dfb205c3SBarry Smith 3173dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3174dfb205c3SBarry Smith 3175dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3176dfb205c3SBarry Smith 3177dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 317869b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3179dfb205c3SBarry Smith @*/ 31807087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3181dfb205c3SBarry Smith { 3182dfb205c3SBarry Smith PetscErrorCode ierr; 3183dfb205c3SBarry Smith 3184dfb205c3SBarry Smith 3185dfb205c3SBarry Smith PetscFunctionBegin; 3186f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3187dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3188dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3189dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3190dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3191dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3192dfb205c3SBarry Smith PetscFunctionReturn(0); 3193dfb205c3SBarry Smith } 3194dfb205c3SBarry Smith 3195dfb205c3SBarry Smith 3196dfb205c3SBarry Smith /*@C 3197dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 3198dfb205c3SBarry Smith (the default parallel PETSc format). 3199dfb205c3SBarry Smith 3200dfb205c3SBarry Smith Collective on MPI_Comm 3201dfb205c3SBarry Smith 3202dfb205c3SBarry Smith Input Parameters: 32031c4f3114SJed Brown + B - the matrix 3204dfb205c3SBarry Smith . bs - the block size 3205dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3206dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3207dfb205c3SBarry Smith - v - optional values in the matrix 3208dfb205c3SBarry Smith 3209dfb205c3SBarry Smith Level: developer 3210dfb205c3SBarry Smith 3211dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3212dfb205c3SBarry Smith 321369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3214dfb205c3SBarry Smith @*/ 32157087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3216dfb205c3SBarry Smith { 32174ac538c5SBarry Smith PetscErrorCode ierr; 3218dfb205c3SBarry Smith 3219dfb205c3SBarry Smith PetscFunctionBegin; 32204ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3221dfb205c3SBarry Smith PetscFunctionReturn(0); 3222dfb205c3SBarry Smith } 3223dfb205c3SBarry Smith 322410c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 32254dcd73b1SHong Zhang { 32264dcd73b1SHong Zhang PetscErrorCode ierr; 322710c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 322810c56fdeSHong Zhang PetscInt *indx; 322910c56fdeSHong Zhang PetscScalar *values; 3230dfb205c3SBarry Smith 32314dcd73b1SHong Zhang PetscFunctionBegin; 32324dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 323310c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 323410c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 323510c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 323610c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 32374dcd73b1SHong Zhang 323810c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 323910c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 324010c56fdeSHong Zhang if (n == PETSC_DECIDE) { 324110c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 324210c56fdeSHong Zhang } 324310c56fdeSHong Zhang /* Check sum(n) = Nbs */ 3244b2566f29SBarry Smith ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 324510c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 324610c56fdeSHong Zhang 324710c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 324810c56fdeSHong Zhang rstart -= mbs; 32494dcd73b1SHong Zhang 32504dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 325110c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 3252e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 325310c56fdeSHong Zhang for (i=0; i<mbs; i++) { 32544dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 32554dcd73b1SHong Zhang nnz = nnz/bs; 32564dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 32574dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 32584dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 32594dcd73b1SHong Zhang } 3260e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 32614dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 32624dcd73b1SHong Zhang 32634dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 326410c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 32654dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 32664dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 32674dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 32684dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 32694dcd73b1SHong Zhang } 32704dcd73b1SHong Zhang 327110c56fdeSHong Zhang /* numeric phase */ 32724dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 327310c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 32744dcd73b1SHong Zhang 3275e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 32764dcd73b1SHong Zhang for (i=0; i<m; i++) { 32774dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 32784dcd73b1SHong Zhang Ii = i + rstart; 327910c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 32804dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 32814dcd73b1SHong Zhang } 3282e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 328310c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 328410c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 32854dcd73b1SHong Zhang PetscFunctionReturn(0); 32864dcd73b1SHong Zhang } 3287