1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 226214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 236214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 246214f412SHong Zhang #endif 25a30f8f8cSSatish Balay 264a2ae208SSatish Balay #undef __FUNCT__ 274a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 287087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 29a30f8f8cSSatish Balay { 30f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 31dfbe8321SBarry Smith PetscErrorCode ierr; 32a30f8f8cSSatish Balay 33a30f8f8cSSatish Balay PetscFunctionBegin; 34a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 35a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 36a30f8f8cSSatish Balay PetscFunctionReturn(0); 37a30f8f8cSSatish Balay } 38a30f8f8cSSatish Balay 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 417087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 53a30f8f8cSSatish Balay { \ 54a30f8f8cSSatish Balay \ 55a30f8f8cSSatish Balay brow = row/bs; \ 56a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 57a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 58a30f8f8cSSatish Balay bcol = col/bs; \ 59a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 60a30f8f8cSSatish Balay low = 0; high = nrow; \ 61a30f8f8cSSatish Balay while (high-low > 3) { \ 62a30f8f8cSSatish Balay t = (low+high)/2; \ 63a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 64a30f8f8cSSatish Balay else low = t; \ 65a30f8f8cSSatish Balay } \ 66a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 67a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 68a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 69a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 70a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 71a30f8f8cSSatish Balay else *bap = value; \ 72a30f8f8cSSatish Balay goto a_noinsert; \ 73a30f8f8cSSatish Balay } \ 74a30f8f8cSSatish Balay } \ 75a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 76e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 77fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 78a30f8f8cSSatish Balay N = nrow++ - 1; \ 79a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 80a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 81a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 82a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 83a30f8f8cSSatish Balay } \ 84a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 85a30f8f8cSSatish Balay rp[_i] = bcol; \ 86a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 87e56f5c9eSBarry Smith A->nonzerostate++;\ 88a30f8f8cSSatish Balay a_noinsert:; \ 89a30f8f8cSSatish Balay ailen[brow] = nrow; \ 90a30f8f8cSSatish Balay } 91e5e170daSBarry Smith 92a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 93a30f8f8cSSatish Balay { \ 94a30f8f8cSSatish Balay brow = row/bs; \ 95a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 96a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 97a30f8f8cSSatish Balay bcol = col/bs; \ 98a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 99a30f8f8cSSatish Balay low = 0; high = nrow; \ 100a30f8f8cSSatish Balay while (high-low > 3) { \ 101a30f8f8cSSatish Balay t = (low+high)/2; \ 102a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 103a30f8f8cSSatish Balay else low = t; \ 104a30f8f8cSSatish Balay } \ 105a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 106a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 107a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 108a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 109a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 110a30f8f8cSSatish Balay else *bap = value; \ 111a30f8f8cSSatish Balay goto b_noinsert; \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 115e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 116fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 117a30f8f8cSSatish Balay N = nrow++ - 1; \ 118a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 119a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 120a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 122a30f8f8cSSatish Balay } \ 123a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 124a30f8f8cSSatish Balay rp[_i] = bcol; \ 125a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 126e56f5c9eSBarry Smith B->nonzerostate++;\ 127a30f8f8cSSatish Balay b_noinsert:; \ 128a30f8f8cSSatish Balay bilen[brow] = nrow; \ 129a30f8f8cSSatish Balay } 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 132a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 133a30f8f8cSSatish Balay */ 1344a2ae208SSatish Balay #undef __FUNCT__ 135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 137a30f8f8cSSatish Balay { 138a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 139a30f8f8cSSatish Balay MatScalar value; 140ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 141dfbe8321SBarry Smith PetscErrorCode ierr; 1421302d50aSBarry Smith PetscInt i,j,row,col; 143d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 144d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 145d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 146a30f8f8cSSatish Balay 147a30f8f8cSSatish Balay /* Some Variables required in the macro */ 148a30f8f8cSSatish Balay Mat A = baij->A; 149a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1501302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 151a30f8f8cSSatish Balay MatScalar *aa =a->a; 152a30f8f8cSSatish Balay 153a30f8f8cSSatish Balay Mat B = baij->B; 154a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1551302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 156a30f8f8cSSatish Balay MatScalar *ba =b->a; 157a30f8f8cSSatish Balay 1581302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1591302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 160a30f8f8cSSatish Balay MatScalar *ap,*bap; 161a30f8f8cSSatish Balay 162a30f8f8cSSatish Balay /* for stash */ 1630298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1640298fd71SBarry Smith MatScalar *v_loc = NULL; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (!baij->donotstash) { 16859ffdab8SBarry Smith if (n > baij->n_loc) { 16959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 171785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 172785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 17326fbe8dcSKarl Rupp 17459ffdab8SBarry Smith baij->n_loc = n; 17559ffdab8SBarry Smith } 17659ffdab8SBarry Smith in_loc = baij->in_loc; 17759ffdab8SBarry Smith v_loc = baij->v_loc; 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 180a30f8f8cSSatish Balay for (i=0; i<m; i++) { 181a30f8f8cSSatish Balay if (im[i] < 0) continue; 1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 183e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 184a30f8f8cSSatish Balay #endif 185a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 186a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 187a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18801b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 18901b2bd88SHong Zhang if (a->ignore_ltriangular) { 19001b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19126fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19201b2bd88SHong Zhang } 193a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 194a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 195a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 196a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 197db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 198db4deed7SKarl Rupp else value = v[i+j*m]; 199a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 200a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 201a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 203cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 204a30f8f8cSSatish Balay #endif 205a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 206a30f8f8cSSatish Balay if (mat->was_assembled) { 207a30f8f8cSSatish Balay if (!baij->colmap) { 208ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 209a30f8f8cSSatish Balay } 210a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 211a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21271730473SSatish Balay col = col - 1; 213a30f8f8cSSatish Balay #else 21471730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 215a30f8f8cSSatish Balay #endif 216a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 217ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 218a30f8f8cSSatish Balay col = in[j]; 219a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 220a30f8f8cSSatish Balay B = baij->B; 221a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 222a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 223a30f8f8cSSatish Balay ba = b->a; 22471730473SSatish Balay } else col += in[j]%bs; 225a30f8f8cSSatish Balay } else col = in[j]; 226db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 227db4deed7SKarl Rupp else value = v[i+j*m]; 228a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 229a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 230a30f8f8cSSatish Balay } 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay } else { /* off processor entry */ 2334cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 234a30f8f8cSSatish Balay if (!baij->donotstash) { 2355080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++) { 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray =baij->barray; 261ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if (!barray) { 269785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 281e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 286f3f98c53SJed Brown if (im[i] > in[j]) { 287f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 288e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 289f3f98c53SJed Brown } 2900880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2910880e062SHong Zhang if ((roworiented) && (n == 1)) { 292f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2930880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 294f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2950880e062SHong Zhang } else { /* Here a copy is required */ 2960880e062SHong Zhang if (roworiented) { 2970880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2980880e062SHong Zhang } else { 2990880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3000880e062SHong Zhang } 3010880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3020880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3030880e062SHong Zhang *barray++ = *value++; 3040880e062SHong Zhang } 3050880e062SHong Zhang } 3060880e062SHong Zhang barray -=bs2; 3070880e062SHong Zhang } 3080880e062SHong Zhang 3090880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 3100880e062SHong Zhang col = in[j] - cstart; 3110880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 31226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 314cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3150880e062SHong Zhang #endif 3160880e062SHong Zhang else { 3170880e062SHong Zhang if (mat->was_assembled) { 3180880e062SHong Zhang if (!baij->colmap) { 319ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3200880e062SHong Zhang } 3210880e062SHong Zhang 3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3230880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3241302d50aSBarry Smith { PetscInt data; 3250880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 326e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang } 3280880e062SHong Zhang #else 329e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3300880e062SHong Zhang #endif 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3330880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3340880e062SHong Zhang col = (col - 1)/bs; 3350880e062SHong Zhang #else 3360880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3370880e062SHong Zhang #endif 3380880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 339ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3400880e062SHong Zhang col = in[j]; 3410880e062SHong Zhang } 34226fbe8dcSKarl Rupp } else col = in[j]; 343e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3440880e062SHong Zhang } 3450880e062SHong Zhang } 3460880e062SHong Zhang } else { 3474cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3480880e062SHong Zhang if (!baij->donotstash) { 3490880e062SHong Zhang if (roworiented) { 3500880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3510880e062SHong Zhang } else { 3520880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } 3540880e062SHong Zhang } 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang PetscFunctionReturn(0); 358a30f8f8cSSatish Balay } 359a30f8f8cSSatish Balay 3604a2ae208SSatish Balay #undef __FUNCT__ 3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 363a30f8f8cSSatish Balay { 364f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3656849ba73SBarry Smith PetscErrorCode ierr; 366d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 367d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 368a30f8f8cSSatish Balay 369a30f8f8cSSatish Balay PetscFunctionBegin; 370a30f8f8cSSatish Balay for (i=0; i<m; i++) { 371e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 372e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 373a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 374a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 375a30f8f8cSSatish Balay for (j=0; j<n; j++) { 376e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 377e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 378a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 379a30f8f8cSSatish Balay col = idxn[j] - bscstart; 380c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } else { 382a30f8f8cSSatish Balay if (!baij->colmap) { 383ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 386a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 387a30f8f8cSSatish Balay data--; 388a30f8f8cSSatish Balay #else 389a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 390a30f8f8cSSatish Balay #endif 391a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 392a30f8f8cSSatish Balay else { 393a30f8f8cSSatish Balay col = data + idxn[j]%bs; 394e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 398f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay PetscFunctionReturn(0); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay 4034a2ae208SSatish Balay #undef __FUNCT__ 4044a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 405dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 406a30f8f8cSSatish Balay { 407a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 408dfbe8321SBarry Smith PetscErrorCode ierr; 409a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 410a30f8f8cSSatish Balay 411a30f8f8cSSatish Balay PetscFunctionBegin; 412a30f8f8cSSatish Balay if (baij->size == 1) { 413a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 414a30f8f8cSSatish Balay } else { 415a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 416785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 418a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 419a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 420a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 421ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4228f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 423a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4240b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4250b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4260b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4270b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 428899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 429d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4300b8dc8d2SHong Zhang MatScalar *v; 4310b8dc8d2SHong Zhang 432dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 433d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4340b8dc8d2SHong Zhang /* Amat */ 4350b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4360b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4370b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4380b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4390b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4400b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4410b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4420b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4430b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4440b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4450b8dc8d2SHong Zhang /* non-diagonal block */ 4460b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang /* Bmat */ 4520b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4530b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4540b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4550b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4560b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4570b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4580b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4590b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4600b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4610b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4620b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4630b8dc8d2SHong Zhang } 4640b8dc8d2SHong Zhang } 4650b8dc8d2SHong Zhang } 4660b8dc8d2SHong Zhang } 467ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4680b8dc8d2SHong Zhang *norm = 0.0; 469d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4700b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4710b8dc8d2SHong Zhang } 47274ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 473f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 474a30f8f8cSSatish Balay } 475a30f8f8cSSatish Balay PetscFunctionReturn(0); 476a30f8f8cSSatish Balay } 477a30f8f8cSSatish Balay 4784a2ae208SSatish Balay #undef __FUNCT__ 4794a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 480dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 481a30f8f8cSSatish Balay { 482a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 483dfbe8321SBarry Smith PetscErrorCode ierr; 4841302d50aSBarry Smith PetscInt nstash,reallocs; 485a30f8f8cSSatish Balay InsertMode addv; 486a30f8f8cSSatish Balay 487a30f8f8cSSatish Balay PetscFunctionBegin; 48826fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 489a30f8f8cSSatish Balay 490a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 491ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 492ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 493a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 494a30f8f8cSSatish Balay 495d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4961e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 497a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4981e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 499a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5001e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 501a30f8f8cSSatish Balay PetscFunctionReturn(0); 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay 5044a2ae208SSatish Balay #undef __FUNCT__ 5054a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 506dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 507a30f8f8cSSatish Balay { 508a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 509a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 5106849ba73SBarry Smith PetscErrorCode ierr; 51113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 512e44c0bd4SBarry Smith PetscInt *row,*col; 513ace3abfcSBarry Smith PetscBool other_disassembled; 51413f74950SBarry Smith PetscMPIInt n; 515ace3abfcSBarry Smith PetscBool r1,r2,r3; 516a30f8f8cSSatish Balay MatScalar *val; 517a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 518a30f8f8cSSatish Balay 51991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 520a30f8f8cSSatish Balay PetscFunctionBegin; 5214cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 522a30f8f8cSSatish Balay while (1) { 523a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 524a30f8f8cSSatish Balay if (!flg) break; 525a30f8f8cSSatish Balay 526a30f8f8cSSatish Balay for (i=0; i<n;) { 527a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 52826fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 52926fbe8dcSKarl Rupp if (row[j] != rstart) break; 53026fbe8dcSKarl Rupp } 531a30f8f8cSSatish Balay if (j < n) ncols = j-i; 532a30f8f8cSSatish Balay else ncols = n-i; 533a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 534dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 535a30f8f8cSSatish Balay i = j; 536a30f8f8cSSatish Balay } 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 539a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 540a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 541a30f8f8cSSatish Balay restore the original flags */ 542a30f8f8cSSatish Balay r1 = baij->roworiented; 543a30f8f8cSSatish Balay r2 = a->roworiented; 54491c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 54526fbe8dcSKarl Rupp 546a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 547a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 54826fbe8dcSKarl Rupp 54991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 550a30f8f8cSSatish Balay while (1) { 551a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 552a30f8f8cSSatish Balay if (!flg) break; 553a30f8f8cSSatish Balay 554a30f8f8cSSatish Balay for (i=0; i<n;) { 555a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 55626fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 55726fbe8dcSKarl Rupp if (row[j] != rstart) break; 55826fbe8dcSKarl Rupp } 559a30f8f8cSSatish Balay if (j < n) ncols = j-i; 560a30f8f8cSSatish Balay else ncols = n-i; 561dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 562a30f8f8cSSatish Balay i = j; 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 56626fbe8dcSKarl Rupp 567a30f8f8cSSatish Balay baij->roworiented = r1; 568a30f8f8cSSatish Balay a->roworiented = r2; 56926fbe8dcSKarl Rupp 57091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay 576a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 577a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 578a30f8f8cSSatish Balay /* 579a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 580a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 581a30f8f8cSSatish Balay */ 582a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 583ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 584a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 585ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 589a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 591a30f8f8cSSatish Balay } 592a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay 59574ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 59626fbe8dcSKarl Rupp 597a30f8f8cSSatish Balay baij->rowvalues = 0; 5984f9cfa9eSBarry Smith 5994f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 6004f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 601e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 60209e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 603e56f5c9eSBarry Smith } 604a30f8f8cSSatish Balay PetscFunctionReturn(0); 605a30f8f8cSSatish Balay } 606a30f8f8cSSatish Balay 6077da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 608dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6099804daf3SBarry Smith #include <petscdraw.h> 6104a2ae208SSatish Balay #undef __FUNCT__ 6114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6126849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 613a30f8f8cSSatish Balay { 614a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 615dfbe8321SBarry Smith PetscErrorCode ierr; 616d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6177da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 618ace3abfcSBarry Smith PetscBool iascii,isdraw; 619b0a32e0cSBarry Smith PetscViewer sviewer; 620f3ef73ceSBarry Smith PetscViewerFormat format; 621a30f8f8cSSatish Balay 622a30f8f8cSSatish Balay PetscFunctionBegin; 623251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 624251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 62532077d6dSBarry Smith if (iascii) { 626b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 627456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 628a30f8f8cSSatish Balay MatInfo info; 629ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6317b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6327b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 633a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 634e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 635a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 636e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 637b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6387b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 63907d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 640a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 641a30f8f8cSSatish Balay PetscFunctionReturn(0); 642fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 64377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 644a30f8f8cSSatish Balay PetscFunctionReturn(0); 645c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 646c1490034SHong Zhang PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 650a30f8f8cSSatish Balay if (isdraw) { 651b0a32e0cSBarry Smith PetscDraw draw; 652ace3abfcSBarry Smith PetscBool isnull; 653b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 654b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay 6577da1fb6eSBarry Smith { 658a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 659a30f8f8cSSatish Balay Mat A; 66065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 66165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 662d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 663a30f8f8cSSatish Balay MatScalar *a; 6643e219373SBarry Smith const char *matname; 665a30f8f8cSSatish Balay 666f204ca49SKris Buschelman /* Should this be the same type as mat? */ 667ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 668a30f8f8cSSatish Balay if (!rank) { 669f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 670a30f8f8cSSatish Balay } else { 671f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 672a30f8f8cSSatish Balay } 673f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6740298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6752b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6763bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay /* copy over the A part */ 67965d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 680a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 681785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 682a30f8f8cSSatish Balay 683a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 684e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 68526fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 686a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 687e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 688a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 689dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 69026fbe8dcSKarl Rupp col++; 69126fbe8dcSKarl Rupp a += bs; 692a30f8f8cSSatish Balay } 693a30f8f8cSSatish Balay } 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay /* copy over the B part */ 69665d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69765d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 698a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 699e9f7bc9eSHong Zhang 700e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 70126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 702a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 703a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 704a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 705799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 70626fbe8dcSKarl Rupp col++; 70726fbe8dcSKarl Rupp a += bs; 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 713a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 714a30f8f8cSSatish Balay /* 715a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 716b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 717a30f8f8cSSatish Balay */ 718b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 719ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 7203e219373SBarry Smith if (!rank) { 721ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 7227da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 723a30f8f8cSSatish Balay } 724b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7256bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 726a30f8f8cSSatish Balay } 727a30f8f8cSSatish Balay PetscFunctionReturn(0); 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 7304a2ae208SSatish Balay #undef __FUNCT__ 7314a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 732dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 733a30f8f8cSSatish Balay { 734dfbe8321SBarry Smith PetscErrorCode ierr; 735ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay PetscFunctionBegin; 738251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 739251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 740251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 741251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 74232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 743a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay PetscFunctionReturn(0); 746a30f8f8cSSatish Balay } 747a30f8f8cSSatish Balay 7484a2ae208SSatish Balay #undef __FUNCT__ 7494a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 750dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 751a30f8f8cSSatish Balay { 752a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 753dfbe8321SBarry Smith PetscErrorCode ierr; 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay PetscFunctionBegin; 756a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 757d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 758a30f8f8cSSatish Balay #endif 759a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 760a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7616bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7626bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 763a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7646bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 765a30f8f8cSSatish Balay #else 76605b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 767a30f8f8cSSatish Balay #endif 76805b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7706bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7716bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7726bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7736bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7746bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7756bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7766bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7775755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77805b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77905b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7806bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7816bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7826bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 783ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 78405b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 785a30f8f8cSSatish Balay #endif 78659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 788899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 789bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 790901853e0SKris Buschelman 791dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 792bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 793bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 794bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 795bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 796bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 7976214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 7986214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 7996214f412SHong Zhang #endif 800a30f8f8cSSatish Balay PetscFunctionReturn(0); 801a30f8f8cSSatish Balay } 802a30f8f8cSSatish Balay 8034a2ae208SSatish Balay #undef __FUNCT__ 804547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 805547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 806547795f9SHong Zhang { 807547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 808547795f9SHong Zhang PetscErrorCode ierr; 809547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 810547795f9SHong Zhang PetscScalar *x,*from; 811547795f9SHong Zhang 812547795f9SHong Zhang PetscFunctionBegin; 813547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 814e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 815547795f9SHong Zhang 816547795f9SHong Zhang /* diagonal part */ 817547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 818547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 819547795f9SHong Zhang 820547795f9SHong Zhang /* subdiagonal part */ 821547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 822547795f9SHong Zhang 823547795f9SHong Zhang /* copy x into the vec slvec0 */ 824547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 825547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 826547795f9SHong Zhang 827547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 828547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 829547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 830547795f9SHong Zhang 831547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 832547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 833547795f9SHong Zhang /* supperdiagonal part */ 834547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 835547795f9SHong Zhang PetscFunctionReturn(0); 836547795f9SHong Zhang } 837547795f9SHong Zhang 838547795f9SHong Zhang #undef __FUNCT__ 839a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 840dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 841a9d4b620SHong Zhang { 842a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 843dfbe8321SBarry Smith PetscErrorCode ierr; 844d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 845d9ca1df4SBarry Smith PetscScalar *from; 846d9ca1df4SBarry Smith const PetscScalar *x; 847a9d4b620SHong Zhang 848a9d4b620SHong Zhang PetscFunctionBegin; 849a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 850e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 851a9d4b620SHong Zhang 852a9d4b620SHong Zhang /* diagonal part */ 853a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 854fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 855a9d4b620SHong Zhang 856a9d4b620SHong Zhang /* subdiagonal part */ 857a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 858fc165ae2SBarry Smith 859a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8601ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 861d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 862a9d4b620SHong Zhang 863fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 864fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 865d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 866fc165ae2SBarry Smith 867fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 868ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 869a9d4b620SHong Zhang /* supperdiagonal part */ 870a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 871a9d4b620SHong Zhang PetscFunctionReturn(0); 872a9d4b620SHong Zhang } 873a9d4b620SHong Zhang 874a9d4b620SHong Zhang #undef __FUNCT__ 87540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 876dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 877a30f8f8cSSatish Balay { 878a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 879dfbe8321SBarry Smith PetscErrorCode ierr; 8801302d50aSBarry Smith PetscInt nt; 881a30f8f8cSSatish Balay 882a30f8f8cSSatish Balay PetscFunctionBegin; 883a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 884e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 885e7e72b3dSBarry Smith 886a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 887e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88865d70643SHong Zhang 889ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 890b941877fSHong Zhang /* do diagonal part */ 891b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 892b941877fSHong Zhang /* do supperdiagonal part */ 893ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 894b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 895b941877fSHong Zhang /* do subdiagonal part */ 896b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 897ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 898ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 899a30f8f8cSSatish Balay PetscFunctionReturn(0); 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 9024a2ae208SSatish Balay #undef __FUNCT__ 9034a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 904dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 905a30f8f8cSSatish Balay { 906de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 907dfbe8321SBarry Smith PetscErrorCode ierr; 908d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 909d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 910d9ca1df4SBarry Smith const PetscScalar *x; 911a9d4b620SHong Zhang 912a9d4b620SHong Zhang PetscFunctionBegin; 913a9d4b620SHong Zhang /* 914ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 9150ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 916a9d4b620SHong Zhang */ 917a9d4b620SHong Zhang /* diagonal part */ 918a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9192dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 920a9d4b620SHong Zhang 921a9d4b620SHong Zhang /* subdiagonal part */ 922a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 923a9d4b620SHong Zhang 924a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9251ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 926d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 927a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9281ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 929a9d4b620SHong Zhang 930ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 931d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 932ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 933a9d4b620SHong Zhang 934a9d4b620SHong Zhang /* supperdiagonal part */ 935a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 936a9d4b620SHong Zhang PetscFunctionReturn(0); 937a9d4b620SHong Zhang } 938a9d4b620SHong Zhang 939a9d4b620SHong Zhang #undef __FUNCT__ 940a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 941dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 942a9d4b620SHong Zhang { 943a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 944dfbe8321SBarry Smith PetscErrorCode ierr; 945a30f8f8cSSatish Balay 946a30f8f8cSSatish Balay PetscFunctionBegin; 947ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 948b941877fSHong Zhang /* do diagonal part */ 949b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 950b941877fSHong Zhang /* do supperdiagonal part */ 951ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 952de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 953de8b6608SHong Zhang 954b941877fSHong Zhang /* do subdiagonal part */ 955a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 956ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 957ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 958a30f8f8cSSatish Balay PetscFunctionReturn(0); 959a30f8f8cSSatish Balay } 960a30f8f8cSSatish Balay 961a30f8f8cSSatish Balay /* 962a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 963a30f8f8cSSatish Balay diagonal block 964a30f8f8cSSatish Balay */ 9654a2ae208SSatish Balay #undef __FUNCT__ 9664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 967dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 968a30f8f8cSSatish Balay { 969a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 970dfbe8321SBarry Smith PetscErrorCode ierr; 971a30f8f8cSSatish Balay 972a30f8f8cSSatish Balay PetscFunctionBegin; 973e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 974a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 975a30f8f8cSSatish Balay PetscFunctionReturn(0); 976a30f8f8cSSatish Balay } 977a30f8f8cSSatish Balay 9784a2ae208SSatish Balay #undef __FUNCT__ 9794a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 980f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 981a30f8f8cSSatish Balay { 982a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 983dfbe8321SBarry Smith PetscErrorCode ierr; 984a30f8f8cSSatish Balay 985a30f8f8cSSatish Balay PetscFunctionBegin; 986f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 987f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 988a30f8f8cSSatish Balay PetscFunctionReturn(0); 989a30f8f8cSSatish Balay } 990a30f8f8cSSatish Balay 9914a2ae208SSatish Balay #undef __FUNCT__ 9924a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9931302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 994a30f8f8cSSatish Balay { 995d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 996d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 997d0d4cfc2SHong Zhang PetscErrorCode ierr; 998d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 999d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1000899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1001d0d4cfc2SHong Zhang 1002a30f8f8cSSatish Balay PetscFunctionBegin; 1003e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1004d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1005d0d4cfc2SHong Zhang 1006d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1007d0d4cfc2SHong Zhang /* 1008d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1009d0d4cfc2SHong Zhang */ 1010d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1011d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1012d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1013d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1014d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 101526fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1016d0d4cfc2SHong Zhang } 1017dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1018d0d4cfc2SHong Zhang } 1019d0d4cfc2SHong Zhang 1020e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1021d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1022d0d4cfc2SHong Zhang 1023d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1024d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1025d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1026d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1027d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1028d0d4cfc2SHong Zhang nztot = nzA + nzB; 1029d0d4cfc2SHong Zhang 1030d0d4cfc2SHong Zhang cmap = mat->garray; 1031d0d4cfc2SHong Zhang if (v || idx) { 1032d0d4cfc2SHong Zhang if (nztot) { 1033d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1034d0d4cfc2SHong Zhang PetscInt imark = -1; 1035d0d4cfc2SHong Zhang if (v) { 1036d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1037d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1038d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1039d0d4cfc2SHong Zhang else break; 1040d0d4cfc2SHong Zhang } 1041d0d4cfc2SHong Zhang imark = i; 1042d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1043d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1044d0d4cfc2SHong Zhang } 1045d0d4cfc2SHong Zhang if (idx) { 1046d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1047d0d4cfc2SHong Zhang if (imark > -1) { 1048d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1049d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1050d0d4cfc2SHong Zhang } 1051d0d4cfc2SHong Zhang } else { 1052d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 105326fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1054d0d4cfc2SHong Zhang else break; 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang imark = i; 1057d0d4cfc2SHong Zhang } 1058d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1059d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang } else { 1062d0d4cfc2SHong Zhang if (idx) *idx = 0; 1063d0d4cfc2SHong Zhang if (v) *v = 0; 1064d0d4cfc2SHong Zhang } 1065d0d4cfc2SHong Zhang } 1066d0d4cfc2SHong Zhang *nz = nztot; 1067d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1068d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1069a30f8f8cSSatish Balay PetscFunctionReturn(0); 1070a30f8f8cSSatish Balay } 1071a30f8f8cSSatish Balay 10724a2ae208SSatish Balay #undef __FUNCT__ 10734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10741302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1075a30f8f8cSSatish Balay { 1076a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1077a30f8f8cSSatish Balay 1078a30f8f8cSSatish Balay PetscFunctionBegin; 1079e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1080a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1081a30f8f8cSSatish Balay PetscFunctionReturn(0); 1082a30f8f8cSSatish Balay } 1083a30f8f8cSSatish Balay 10844a2ae208SSatish Balay #undef __FUNCT__ 1085d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1086d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1087d0d4cfc2SHong Zhang { 1088d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1089d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1090d0d4cfc2SHong Zhang 1091d0d4cfc2SHong Zhang PetscFunctionBegin; 1092d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1093d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1094d0d4cfc2SHong Zhang } 1095d0d4cfc2SHong Zhang #undef __FUNCT__ 1096d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1097d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1098d0d4cfc2SHong Zhang { 1099d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1100d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1101d0d4cfc2SHong Zhang 1102d0d4cfc2SHong Zhang PetscFunctionBegin; 1103d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1104d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1105d0d4cfc2SHong Zhang } 1106d0d4cfc2SHong Zhang 1107d0d4cfc2SHong Zhang #undef __FUNCT__ 110899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 111099cafbc1SBarry Smith { 111199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111299cafbc1SBarry Smith PetscErrorCode ierr; 111399cafbc1SBarry Smith 111499cafbc1SBarry Smith PetscFunctionBegin; 111599cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111699cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111799cafbc1SBarry Smith PetscFunctionReturn(0); 111899cafbc1SBarry Smith } 111999cafbc1SBarry Smith 112099cafbc1SBarry Smith #undef __FUNCT__ 112199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 112299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 112399cafbc1SBarry Smith { 112499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112599cafbc1SBarry Smith PetscErrorCode ierr; 112699cafbc1SBarry Smith 112799cafbc1SBarry Smith PetscFunctionBegin; 112899cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112999cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 113099cafbc1SBarry Smith PetscFunctionReturn(0); 113199cafbc1SBarry Smith } 113299cafbc1SBarry Smith 113336032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 113436032a97SHong Zhang Input: isrow - distributed(parallel), 113536032a97SHong Zhang iscol_local - locally owned (seq) 113636032a97SHong Zhang */ 113799cafbc1SBarry Smith #undef __FUNCT__ 113836032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 113936032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 11408f46ffcaSHong Zhang { 11418f46ffcaSHong Zhang PetscErrorCode ierr; 11428f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 11438f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 114436032a97SHong Zhang 114536032a97SHong Zhang PetscFunctionBegin; 11468f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 11478f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 1148*1098a8e8SHong Zhang if (sz1 > sz2) { 1149*1098a8e8SHong Zhang *flg = PETSC_FALSE; 1150*1098a8e8SHong Zhang PetscFunctionReturn(0); 1151*1098a8e8SHong Zhang } 11528f46ffcaSHong Zhang 11538f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 11548f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 11558f46ffcaSHong Zhang 11568f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 11578f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 11588f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 11598f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 11608f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 11618f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 11628f46ffcaSHong Zhang 11638f46ffcaSHong Zhang nmatch=0; 11648f46ffcaSHong Zhang k = 0; 11658f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 11668f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 11678f46ffcaSHong Zhang if (a1[i] == a2[j]) { 11688f46ffcaSHong Zhang k = j; nmatch++; 11698f46ffcaSHong Zhang break; 11708f46ffcaSHong Zhang } 11718f46ffcaSHong Zhang } 11728f46ffcaSHong Zhang } 11738f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 11748f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 11758f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 11768f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 1177*1098a8e8SHong Zhang if (nmatch < sz1) { 1178*1098a8e8SHong Zhang *flg = PETSC_FALSE; 1179*1098a8e8SHong Zhang } else { 1180*1098a8e8SHong Zhang *flg = PETSC_TRUE; 1181*1098a8e8SHong Zhang } 118236032a97SHong Zhang PetscFunctionReturn(0); 11838f46ffcaSHong Zhang } 118436032a97SHong Zhang 118536032a97SHong Zhang #undef __FUNCT__ 118636032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 118736032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 118836032a97SHong Zhang { 118936032a97SHong Zhang PetscErrorCode ierr; 119036032a97SHong Zhang IS iscol_local; 119136032a97SHong Zhang PetscInt csize; 119236032a97SHong Zhang PetscBool isequal; 119336032a97SHong Zhang 119436032a97SHong Zhang PetscFunctionBegin; 119536032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 119636032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 119736032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 119836032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 119936032a97SHong Zhang } else { 120036032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 120136032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 120236032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 12038f46ffcaSHong Zhang } 12048f46ffcaSHong Zhang 12058f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 120636032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 12078f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 12088f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 12098f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 12108f46ffcaSHong Zhang } 12118f46ffcaSHong Zhang PetscFunctionReturn(0); 12128f46ffcaSHong Zhang } 12138f46ffcaSHong Zhang 12148f46ffcaSHong Zhang #undef __FUNCT__ 12154a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1216dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1217a30f8f8cSSatish Balay { 1218a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1219dfbe8321SBarry Smith PetscErrorCode ierr; 1220a30f8f8cSSatish Balay 1221a30f8f8cSSatish Balay PetscFunctionBegin; 1222a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1223a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1224a30f8f8cSSatish Balay PetscFunctionReturn(0); 1225a30f8f8cSSatish Balay } 1226a30f8f8cSSatish Balay 12274a2ae208SSatish Balay #undef __FUNCT__ 12284a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1229dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1230a30f8f8cSSatish Balay { 1231a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1232a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1233dfbe8321SBarry Smith PetscErrorCode ierr; 1234a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1235a30f8f8cSSatish Balay 1236a30f8f8cSSatish Balay PetscFunctionBegin; 1237d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 123826fbe8dcSKarl Rupp 1239a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 124026fbe8dcSKarl Rupp 1241a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1242a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 124326fbe8dcSKarl Rupp 1244a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 124526fbe8dcSKarl Rupp 1246a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1247a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1248a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1249a30f8f8cSSatish Balay info->nz_used = isend[0]; 1250a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1251a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1252a30f8f8cSSatish Balay info->memory = isend[3]; 1253a30f8f8cSSatish Balay info->mallocs = isend[4]; 1254a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1255ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 125626fbe8dcSKarl Rupp 1257a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1258a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1259a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1260a30f8f8cSSatish Balay info->memory = irecv[3]; 1261a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1262a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1263ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 126426fbe8dcSKarl Rupp 1265a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1266a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1267a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1268a30f8f8cSSatish Balay info->memory = irecv[3]; 1269a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1270f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1271a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1272a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1273a30f8f8cSSatish Balay info->factor_mallocs = 0; 1274a30f8f8cSSatish Balay PetscFunctionReturn(0); 1275a30f8f8cSSatish Balay } 1276a30f8f8cSSatish Balay 12774a2ae208SSatish Balay #undef __FUNCT__ 12784a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1279ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1280a30f8f8cSSatish Balay { 1281a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1282d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1283dfbe8321SBarry Smith PetscErrorCode ierr; 1284a30f8f8cSSatish Balay 1285a30f8f8cSSatish Balay PetscFunctionBegin; 1286e98b92d7SKris Buschelman switch (op) { 1287512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1288e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 128928b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1290a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1291e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12924e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12934e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1294e98b92d7SKris Buschelman break; 1295e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12964e0d8c25SBarry Smith a->roworiented = flg; 129726fbe8dcSKarl Rupp 12984e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12994e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1300e98b92d7SKris Buschelman break; 13014e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1302290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1303e98b92d7SKris Buschelman break; 1304e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 13054e0d8c25SBarry Smith a->donotstash = flg; 1306e98b92d7SKris Buschelman break; 1307e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 13084e0d8c25SBarry Smith a->ht_flag = flg; 1309e98b92d7SKris Buschelman break; 13109a4540c5SBarry Smith case MAT_HERMITIAN: 1311e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1312eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 131326fbe8dcSKarl Rupp 1314547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1315eeffb40dSHong Zhang break; 1316ffa07934SHong Zhang case MAT_SPD: 1317ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1318ffa07934SHong Zhang A->spd = flg; 1319ffa07934SHong Zhang if (flg) { 1320ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1321ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1322ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1323ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1324ffa07934SHong Zhang } 1325ffa07934SHong Zhang break; 132677e54ba9SKris Buschelman case MAT_SYMMETRIC: 1327eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1328eeffb40dSHong Zhang break; 132977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1330eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1331eeffb40dSHong Zhang break; 13329a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1333e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1334290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 133577e54ba9SKris Buschelman break; 1336d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 13374e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1338d0d4cfc2SHong Zhang break; 1339d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 13404e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1341d0d4cfc2SHong Zhang break; 1342d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 13434e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1344d0d4cfc2SHong Zhang break; 1345e98b92d7SKris Buschelman default: 1346e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1347a30f8f8cSSatish Balay } 1348a30f8f8cSSatish Balay PetscFunctionReturn(0); 1349a30f8f8cSSatish Balay } 1350a30f8f8cSSatish Balay 13514a2ae208SSatish Balay #undef __FUNCT__ 13528115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1353fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1354a30f8f8cSSatish Balay { 1355dfbe8321SBarry Smith PetscErrorCode ierr; 13566e111a19SKarl Rupp 1357a30f8f8cSSatish Balay PetscFunctionBegin; 1358815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1359999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1360fc4dec0aSBarry Smith } 13618115998fSBarry Smith PetscFunctionReturn(0); 1362a30f8f8cSSatish Balay } 1363a30f8f8cSSatish Balay 13644a2ae208SSatish Balay #undef __FUNCT__ 13654a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1366dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1367a30f8f8cSSatish Balay { 1368a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1369a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1370dfbe8321SBarry Smith PetscErrorCode ierr; 13715e90f9d9SHong Zhang PetscInt nv,m,n; 1372ace3abfcSBarry Smith PetscBool flg; 1373a30f8f8cSSatish Balay 1374a30f8f8cSSatish Balay PetscFunctionBegin; 1375a30f8f8cSSatish Balay if (ll != rr) { 1376b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1377e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1378a30f8f8cSSatish Balay } 1379b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1380b3bf805bSHong Zhang 13815e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1382e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1383b3bf805bSHong Zhang 13845e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1385e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13865e90f9d9SHong Zhang 1387ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13885e90f9d9SHong Zhang 13895e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 13900298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 13915e90f9d9SHong Zhang 13925e90f9d9SHong Zhang /* scale the diagonal part */ 1393a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1394a30f8f8cSSatish Balay 13955e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1396ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13970298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1398a30f8f8cSSatish Balay PetscFunctionReturn(0); 1399a30f8f8cSSatish Balay } 1400a30f8f8cSSatish Balay 14014a2ae208SSatish Balay #undef __FUNCT__ 14024a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1403dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1404a30f8f8cSSatish Balay { 1405f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1406dfbe8321SBarry Smith PetscErrorCode ierr; 1407a30f8f8cSSatish Balay 1408a30f8f8cSSatish Balay PetscFunctionBegin; 1409a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1410a30f8f8cSSatish Balay PetscFunctionReturn(0); 1411a30f8f8cSSatish Balay } 1412a30f8f8cSSatish Balay 14136849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1414a30f8f8cSSatish Balay 14154a2ae208SSatish Balay #undef __FUNCT__ 14164a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1417ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1418a30f8f8cSSatish Balay { 1419a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1420a30f8f8cSSatish Balay Mat a,b,c,d; 1421ace3abfcSBarry Smith PetscBool flg; 1422dfbe8321SBarry Smith PetscErrorCode ierr; 1423a30f8f8cSSatish Balay 1424a30f8f8cSSatish Balay PetscFunctionBegin; 1425a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1426a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1427a30f8f8cSSatish Balay 1428a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1429abc0a331SBarry Smith if (flg) { 1430a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1431a30f8f8cSSatish Balay } 1432ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1433a30f8f8cSSatish Balay PetscFunctionReturn(0); 1434a30f8f8cSSatish Balay } 1435a30f8f8cSSatish Balay 14364a2ae208SSatish Balay #undef __FUNCT__ 14373c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 14383c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 14393c896bc6SHong Zhang { 14403c896bc6SHong Zhang PetscErrorCode ierr; 14413c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14423c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 14433c896bc6SHong Zhang 14443c896bc6SHong Zhang PetscFunctionBegin; 14453c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 14463c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1447d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 14483c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1449d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14503c896bc6SHong Zhang } else { 14513c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14523c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14533c896bc6SHong Zhang } 14543c896bc6SHong Zhang PetscFunctionReturn(0); 14553c896bc6SHong Zhang } 14563c896bc6SHong Zhang 14573c896bc6SHong Zhang #undef __FUNCT__ 14584994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 14594994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1460273d9f13SBarry Smith { 1461dfbe8321SBarry Smith PetscErrorCode ierr; 1462273d9f13SBarry Smith 1463273d9f13SBarry Smith PetscFunctionBegin; 1464535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1465273d9f13SBarry Smith PetscFunctionReturn(0); 1466273d9f13SBarry Smith } 1467a5e6ed63SBarry Smith 14684fe895cdSHong Zhang #undef __FUNCT__ 14694fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14704fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14714fe895cdSHong Zhang { 14724fe895cdSHong Zhang PetscErrorCode ierr; 14734fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 14744fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14754fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14764fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14774fe895cdSHong Zhang 14784fe895cdSHong Zhang PetscFunctionBegin; 14794fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14804fe895cdSHong Zhang PetscScalar alpha = a; 14814fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 14824fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1483c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 14848b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 14854fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 14864fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1487c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 14888b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1489a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1490ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1491ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1492ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1493ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 14944fe895cdSHong Zhang } else { 14954de5dceeSHong Zhang Mat B; 14964de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 14974de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1498d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14994de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 15004de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 15014de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 15024de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 15034de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 15044de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 15054de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 15064de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 15074de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 15084de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 15094de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 15104de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 15114de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 15124de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 15134de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1514d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 15154de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 15164fe895cdSHong Zhang } 15174fe895cdSHong Zhang PetscFunctionReturn(0); 15184fe895cdSHong Zhang } 15194fe895cdSHong Zhang 1520a5e6ed63SBarry Smith #undef __FUNCT__ 1521a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 15221302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1523a5e6ed63SBarry Smith { 15246849ba73SBarry Smith PetscErrorCode ierr; 15251302d50aSBarry Smith PetscInt i; 1526ace3abfcSBarry Smith PetscBool flg; 1527a5e6ed63SBarry Smith 15286849ba73SBarry Smith PetscFunctionBegin; 15294dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1530a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1531a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 15324dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 15334dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1534a5e6ed63SBarry Smith } 15354dcd73b1SHong Zhang } 1536a5e6ed63SBarry Smith PetscFunctionReturn(0); 1537a5e6ed63SBarry Smith } 1538a5e6ed63SBarry Smith 1539a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 15403964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1541a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1542a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1543a9d4b620SHong Zhang MatMult_MPISBAIJ, 154497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1545431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1546431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1547a30f8f8cSSatish Balay 0, 1548a30f8f8cSSatish Balay 0, 1549a30f8f8cSSatish Balay 0, 155097304618SKris Buschelman /* 10*/ 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay 0, 155341f059aeSBarry Smith MatSOR_MPISBAIJ, 1554a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 155597304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1556a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1557a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1558a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1559a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 156097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1561a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1562a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1563a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1564d519adbfSMatthew Knepley /* 24*/ 0, 1565a30f8f8cSSatish Balay 0, 1566a30f8f8cSSatish Balay 0, 1567a30f8f8cSSatish Balay 0, 1568a30f8f8cSSatish Balay 0, 15694994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1570b5df2d14SHong Zhang 0, 1571a30f8f8cSSatish Balay 0, 1572a30f8f8cSSatish Balay 0, 1573a30f8f8cSSatish Balay 0, 1574d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1575a30f8f8cSSatish Balay 0, 1576a30f8f8cSSatish Balay 0, 1577a30f8f8cSSatish Balay 0, 1578a30f8f8cSSatish Balay 0, 1579d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1580a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1581d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1582a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15833c896bc6SHong Zhang MatCopy_MPISBAIJ, 1584d519adbfSMatthew Knepley /* 44*/ 0, 1585a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1586a30f8f8cSSatish Balay 0, 1587a30f8f8cSSatish Balay 0, 1588a30f8f8cSSatish Balay 0, 1589f73d5cc4SBarry Smith /* 49*/ 0, 1590a30f8f8cSSatish Balay 0, 1591a30f8f8cSSatish Balay 0, 1592a30f8f8cSSatish Balay 0, 1593a30f8f8cSSatish Balay 0, 1594d519adbfSMatthew Knepley /* 54*/ 0, 1595a30f8f8cSSatish Balay 0, 1596a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1597a30f8f8cSSatish Balay 0, 1598a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 15998f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 1600a30f8f8cSSatish Balay 0, 1601a30f8f8cSSatish Balay 0, 1602357abbc8SBarry Smith 0, 160324d5174aSHong Zhang 0, 1604d519adbfSMatthew Knepley /* 64*/ 0, 160524d5174aSHong Zhang 0, 160624d5174aSHong Zhang 0, 160724d5174aSHong Zhang 0, 160824d5174aSHong Zhang 0, 1609d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 161024d5174aSHong Zhang 0, 161197304618SKris Buschelman 0, 161297304618SKris Buschelman 0, 161397304618SKris Buschelman 0, 1614d519adbfSMatthew Knepley /* 74*/ 0, 161597304618SKris Buschelman 0, 161697304618SKris Buschelman 0, 161797304618SKris Buschelman 0, 161897304618SKris Buschelman 0, 1619d519adbfSMatthew Knepley /* 79*/ 0, 162097304618SKris Buschelman 0, 162197304618SKris Buschelman 0, 162297304618SKris Buschelman 0, 16235bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1624d519adbfSMatthew Knepley /* 84*/ 0, 1625865e5f61SKris Buschelman 0, 1626865e5f61SKris Buschelman 0, 1627865e5f61SKris Buschelman 0, 1628865e5f61SKris Buschelman 0, 1629d519adbfSMatthew Knepley /* 89*/ 0, 1630865e5f61SKris Buschelman 0, 1631865e5f61SKris Buschelman 0, 1632865e5f61SKris Buschelman 0, 1633865e5f61SKris Buschelman 0, 1634d519adbfSMatthew Knepley /* 94*/ 0, 1635865e5f61SKris Buschelman 0, 1636865e5f61SKris Buschelman 0, 163799cafbc1SBarry Smith 0, 163899cafbc1SBarry Smith 0, 1639d519adbfSMatthew Knepley /* 99*/ 0, 164099cafbc1SBarry Smith 0, 164199cafbc1SBarry Smith 0, 164299cafbc1SBarry Smith 0, 164399cafbc1SBarry Smith 0, 1644d519adbfSMatthew Knepley /*104*/ 0, 164599cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1646d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1647d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 164895936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 164995936485SShri Abhyankar /*109*/ 0, 165095936485SShri Abhyankar 0, 165195936485SShri Abhyankar 0, 165295936485SShri Abhyankar 0, 165395936485SShri Abhyankar 0, 165495936485SShri Abhyankar /*114*/ 0, 165595936485SShri Abhyankar 0, 165695936485SShri Abhyankar 0, 165795936485SShri Abhyankar 0, 165895936485SShri Abhyankar 0, 165995936485SShri Abhyankar /*119*/ 0, 166095936485SShri Abhyankar 0, 166195936485SShri Abhyankar 0, 16623964eb88SJed Brown 0, 16633964eb88SJed Brown 0, 16643964eb88SJed Brown /*124*/ 0, 16653964eb88SJed Brown 0, 16663964eb88SJed Brown 0, 16673964eb88SJed Brown 0, 16683964eb88SJed Brown 0, 16693964eb88SJed Brown /*129*/ 0, 16703964eb88SJed Brown 0, 16713964eb88SJed Brown 0, 16723964eb88SJed Brown 0, 16733964eb88SJed Brown 0, 16743964eb88SJed Brown /*134*/ 0, 16753964eb88SJed Brown 0, 16763964eb88SJed Brown 0, 16773964eb88SJed Brown 0, 16783964eb88SJed Brown 0, 16793964eb88SJed Brown /*139*/ 0, 1680f9426fe0SMark Adams 0, 168159f5e6ceSHong Zhang 0, 168259f5e6ceSHong Zhang 0, 168359f5e6ceSHong Zhang 0, 168459f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 168599cafbc1SBarry Smith }; 1686a30f8f8cSSatish Balay 16874a2ae208SSatish Balay #undef __FUNCT__ 16884a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 168911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1690a30f8f8cSSatish Balay { 1691a30f8f8cSSatish Balay PetscFunctionBegin; 1692a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1693a30f8f8cSSatish Balay PetscFunctionReturn(0); 1694a30f8f8cSSatish Balay } 1695a30f8f8cSSatish Balay 16964a2ae208SSatish Balay #undef __FUNCT__ 1697a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1698b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1699a23d5eceSKris Buschelman { 1700a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1701dfbe8321SBarry Smith PetscErrorCode ierr; 1702535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1703a23d5eceSKris Buschelman 1704a23d5eceSKris Buschelman PetscFunctionBegin; 170533d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 170626283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 170726283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1708e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1709899cda47SBarry Smith 1710a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1711d0f46423SBarry Smith mbs = B->rmap->n/bs; 1712d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1713c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1714a23d5eceSKris Buschelman 1715d0f46423SBarry Smith B->rmap->bs = bs; 1716a23d5eceSKris Buschelman b->bs2 = bs*bs; 1717a23d5eceSKris Buschelman b->mbs = mbs; 1718a23d5eceSKris Buschelman b->Mbs = Mbs; 1719de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1720de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1721a23d5eceSKris Buschelman 1722a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1723d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1724a23d5eceSKris Buschelman } 1725d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1726d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1727a23d5eceSKris Buschelman 1728d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1729d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1730a23d5eceSKris Buschelman 1731526dfc15SBarry Smith if (!B->preallocated) { 1732f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1733d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 17349c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 17353bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1736f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1737d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 17384aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 17393bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1740ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1741526dfc15SBarry Smith } 1742a23d5eceSKris Buschelman 1743526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1744526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 174526fbe8dcSKarl Rupp 1746526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1747a23d5eceSKris Buschelman PetscFunctionReturn(0); 1748a23d5eceSKris Buschelman } 1749a23d5eceSKris Buschelman 1750dfb205c3SBarry Smith #undef __FUNCT__ 1751dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1752dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1753dfb205c3SBarry Smith { 1754dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1755dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1756dfb205c3SBarry Smith const PetscInt *JJ =0; 1757dfb205c3SBarry Smith PetscScalar *values=0; 1758dfb205c3SBarry Smith PetscErrorCode ierr; 1759dfb205c3SBarry Smith 1760dfb205c3SBarry Smith PetscFunctionBegin; 1761ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1762dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1763dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1764dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1765dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1766e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1767dfb205c3SBarry Smith m = B->rmap->n/bs; 1768dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1769dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1770dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1771dfb205c3SBarry Smith 1772dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1773dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1774dfb205c3SBarry Smith for (i=0; i<m; i++) { 1775dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1776dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1777dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1778dfb205c3SBarry Smith JJ = jj + ii[i]; 1779dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1780dfb205c3SBarry Smith if (*JJ >= cstart) break; 1781dfb205c3SBarry Smith JJ++; 1782dfb205c3SBarry Smith } 1783dfb205c3SBarry Smith d = 0; 1784dfb205c3SBarry Smith for (; j<nz; j++) { 1785dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1786dfb205c3SBarry Smith d++; 1787dfb205c3SBarry Smith } 1788dfb205c3SBarry Smith d_nnz[i] = d; 1789dfb205c3SBarry Smith o_nnz[i] = nz - d; 1790dfb205c3SBarry Smith } 1791dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1792dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1793dfb205c3SBarry Smith 1794dfb205c3SBarry Smith values = (PetscScalar*)V; 1795dfb205c3SBarry Smith if (!values) { 1796785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1797dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1798dfb205c3SBarry Smith } 1799dfb205c3SBarry Smith for (i=0; i<m; i++) { 1800dfb205c3SBarry Smith PetscInt row = i + rstart; 1801dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1802dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1803dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1804dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1805dfb205c3SBarry Smith } 1806dfb205c3SBarry Smith 1807dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1808dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1809dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18107827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1811dfb205c3SBarry Smith PetscFunctionReturn(0); 1812dfb205c3SBarry Smith } 1813dfb205c3SBarry Smith 18140bad9183SKris Buschelman /*MC 1815fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1816828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1817828413b8SBarry Smith the matrix is stored. 1818828413b8SBarry Smith 1819828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1820828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 18210bad9183SKris Buschelman 18220bad9183SKris Buschelman Options Database Keys: 18230bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 18240bad9183SKris Buschelman 18250bad9183SKris Buschelman Level: beginner 18260bad9183SKris Buschelman 18270bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 18280bad9183SKris Buschelman M*/ 18290bad9183SKris Buschelman 18308cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1831aa5a9175SDahai Guo 1832a23d5eceSKris Buschelman #undef __FUNCT__ 18334a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 18348cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1835b5df2d14SHong Zhang { 1836b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1837dfbe8321SBarry Smith PetscErrorCode ierr; 183894ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 1839b5df2d14SHong Zhang 1840b5df2d14SHong Zhang PetscFunctionBegin; 1841b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1842b0a32e0cSBarry Smith B->data = (void*)b; 1843b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1844b5df2d14SHong Zhang 1845b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1846b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1847b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1848b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 184926fbe8dcSKarl Rupp 1850ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1851ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1852b5df2d14SHong Zhang 1853b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1854854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 1855b5df2d14SHong Zhang 1856b5df2d14SHong Zhang /* build cache for off array entries formed */ 1857ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 185826fbe8dcSKarl Rupp 1859b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 18600298fd71SBarry Smith b->colmap = NULL; 18610298fd71SBarry Smith b->garray = NULL; 1862b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang /* stuff used in block assembly */ 1865b5df2d14SHong Zhang b->barray = 0; 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1868b5df2d14SHong Zhang b->lvec = 0; 1869b5df2d14SHong Zhang b->Mvctx = 0; 187040781036SHong Zhang b->slvec0 = 0; 187140781036SHong Zhang b->slvec0b = 0; 187240781036SHong Zhang b->slvec1 = 0; 187340781036SHong Zhang b->slvec1a = 0; 187440781036SHong Zhang b->slvec1b = 0; 187540781036SHong Zhang b->sMvctx = 0; 1876b5df2d14SHong Zhang 1877b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1878b5df2d14SHong Zhang b->rowindices = 0; 1879b5df2d14SHong Zhang b->rowvalues = 0; 1880b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1881b5df2d14SHong Zhang 1882b5df2d14SHong Zhang /* hash table stuff */ 1883b5df2d14SHong Zhang b->ht = 0; 1884b5df2d14SHong Zhang b->hd = 0; 1885b5df2d14SHong Zhang b->ht_size = 0; 1886b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1887b5df2d14SHong Zhang b->ht_fact = 0; 1888b5df2d14SHong Zhang b->ht_total_ct = 0; 1889b5df2d14SHong Zhang b->ht_insert_ct = 0; 1890b5df2d14SHong Zhang 18917a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 18927a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 18937a868f3eSHong Zhang 189459ffdab8SBarry Smith b->in_loc = 0; 189559ffdab8SBarry Smith b->v_loc = 0; 189659ffdab8SBarry Smith b->n_loc = 0; 189794ae4db5SBarry Smith 1898bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1899bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1900bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1901bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1902bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1903bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 19046214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19056214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 19066214f412SHong Zhang #endif 1907aa5a9175SDahai Guo 190823ce1328SBarry Smith B->symmetric = PETSC_TRUE; 190923ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 191023ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 191123ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 191226fbe8dcSKarl Rupp 191317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 191494ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 191594ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 191694ae4db5SBarry Smith if (flg) { 191794ae4db5SBarry Smith PetscReal fact = 1.39; 191894ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 191994ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 192094ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 192194ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 192294ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 192394ae4db5SBarry Smith } 192494ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1925b5df2d14SHong Zhang PetscFunctionReturn(0); 1926b5df2d14SHong Zhang } 1927b5df2d14SHong Zhang 1928209238afSKris Buschelman /*MC 1929002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1930209238afSKris Buschelman 1931209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1932209238afSKris Buschelman and MATMPISBAIJ otherwise. 1933209238afSKris Buschelman 1934209238afSKris Buschelman Options Database Keys: 1935209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1936209238afSKris Buschelman 1937209238afSKris Buschelman Level: beginner 1938209238afSKris Buschelman 1939209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1940209238afSKris Buschelman M*/ 1941209238afSKris Buschelman 19424a2ae208SSatish Balay #undef __FUNCT__ 19434a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1944b5df2d14SHong Zhang /*@C 1945b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1946b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1947b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1948b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1949b5df2d14SHong Zhang 1950b5df2d14SHong Zhang Collective on Mat 1951b5df2d14SHong Zhang 1952b5df2d14SHong Zhang Input Parameters: 19531c4f3114SJed Brown + B - the matrix 1954bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1955bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1956b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1957b5df2d14SHong Zhang submatrix (same for all local rows) 1958b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 19596d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 19600298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 196195742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1962b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1963b5df2d14SHong Zhang submatrix (same for all local rows). 1964b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1965c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 19660298fd71SBarry Smith (possibly different for each block row) or NULL. 1967b5df2d14SHong Zhang 1968b5df2d14SHong Zhang 1969b5df2d14SHong Zhang Options Database Keys: 1970b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1971b5df2d14SHong Zhang block calculations (much slower) 1972b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1973b5df2d14SHong Zhang 1974b5df2d14SHong Zhang Notes: 1975b5df2d14SHong Zhang 1976b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1977b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1978b5df2d14SHong Zhang 197949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 198049a6f317SBarry Smith 1981b5df2d14SHong Zhang Storage Information: 1982b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1983b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1984b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1985b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1986b5df2d14SHong Zhang 1987b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1988b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 19890298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1990b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1991b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1992b5df2d14SHong Zhang 1993aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1994aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1995aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1996aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1997aa95bbe8SBarry Smith 1998b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1999b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2000b5df2d14SHong Zhang 2001b5df2d14SHong Zhang .vb 2002b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2003a4b1a0f6SJed Brown -------------------------- 2004c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2005c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2006c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2007a4b1a0f6SJed Brown -------------------------- 2008b5df2d14SHong Zhang .ve 2009b5df2d14SHong Zhang 2010b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2011b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 20126d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20136d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2014b5df2d14SHong Zhang 20156d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20166d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2017c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2018c2fc9fa9SBarry Smith 2019b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2020b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2021b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2022b5df2d14SHong Zhang matrices. 2023b5df2d14SHong Zhang 2024b5df2d14SHong Zhang Level: intermediate 2025b5df2d14SHong Zhang 2026b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2027b5df2d14SHong Zhang 2028ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2029b5df2d14SHong Zhang @*/ 20307087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2031b5df2d14SHong Zhang { 20324ac538c5SBarry Smith PetscErrorCode ierr; 2033b5df2d14SHong Zhang 2034b5df2d14SHong Zhang PetscFunctionBegin; 20356ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20366ba663aaSJed Brown PetscValidType(B,1); 20376ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 20384ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2039b5df2d14SHong Zhang PetscFunctionReturn(0); 2040b5df2d14SHong Zhang } 2041b5df2d14SHong Zhang 20424a2ae208SSatish Balay #undef __FUNCT__ 204369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2044a30f8f8cSSatish Balay /*@C 204569b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2046a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2047a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2048a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2049a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2050a30f8f8cSSatish Balay 2051a30f8f8cSSatish Balay Collective on MPI_Comm 2052a30f8f8cSSatish Balay 2053a30f8f8cSSatish Balay Input Parameters: 2054a30f8f8cSSatish Balay + comm - MPI communicator 2055bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2056bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2057a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2058a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2059a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2060a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2061a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2062a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2063a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2064a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2065a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2066a30f8f8cSSatish Balay submatrix (same for all local rows) 2067a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 20686d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 20690298fd71SBarry Smith (possibly different for each block block row) or NULL. 207095742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 207195742e49SBarry Smith set its value even if it is zero. 2072a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2073a30f8f8cSSatish Balay submatrix (same for all local rows). 2074a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2075a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 20760298fd71SBarry Smith each block row) or NULL. 2077a30f8f8cSSatish Balay 2078a30f8f8cSSatish Balay Output Parameter: 2079a30f8f8cSSatish Balay . A - the matrix 2080a30f8f8cSSatish Balay 2081a30f8f8cSSatish Balay Options Database Keys: 2082a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2083a30f8f8cSSatish Balay block calculations (much slower) 2084a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2085a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2086a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2087a30f8f8cSSatish Balay 2088175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2089ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2090175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2091175b88e8SBarry Smith 2092a30f8f8cSSatish Balay Notes: 2093d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20946d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2095d1be2dadSMatthew Knepley 2096a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2097a30f8f8cSSatish Balay (possibly both). 2098a30f8f8cSSatish Balay 2099a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2100a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2101a30f8f8cSSatish Balay 210249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 210349a6f317SBarry Smith 2104a30f8f8cSSatish Balay Storage Information: 2105a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2106a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2107a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2108a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2109a30f8f8cSSatish Balay 2110a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2111a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 21120298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2113a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2114a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2115a30f8f8cSSatish Balay 2116a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2117a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2118a30f8f8cSSatish Balay 2119a30f8f8cSSatish Balay .vb 2120a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2121a4b1a0f6SJed Brown -------------------------- 2122c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2123c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2124c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2125a4b1a0f6SJed Brown -------------------------- 2126a30f8f8cSSatish Balay .ve 2127a30f8f8cSSatish Balay 2128a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2129a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 21306d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 21316d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2132a30f8f8cSSatish Balay 21336d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 21346d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2135a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2136a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2137a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2138a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2139a30f8f8cSSatish Balay matrices. 2140a30f8f8cSSatish Balay 2141a30f8f8cSSatish Balay Level: intermediate 2142a30f8f8cSSatish Balay 2143a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2144a30f8f8cSSatish Balay 214569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2146a30f8f8cSSatish Balay @*/ 2147a30f8f8cSSatish Balay 214869b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2149a30f8f8cSSatish Balay { 21506849ba73SBarry Smith PetscErrorCode ierr; 21511302d50aSBarry Smith PetscMPIInt size; 2152a30f8f8cSSatish Balay 2153a30f8f8cSSatish Balay PetscFunctionBegin; 2154f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2155f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2156273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2157273d9f13SBarry Smith if (size > 1) { 2158b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2159b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2160273d9f13SBarry Smith } else { 2161273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2162273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2163273d9f13SBarry Smith } 2164a30f8f8cSSatish Balay PetscFunctionReturn(0); 2165a30f8f8cSSatish Balay } 2166a30f8f8cSSatish Balay 2167a30f8f8cSSatish Balay 21684a2ae208SSatish Balay #undef __FUNCT__ 21694a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 21706849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2171a30f8f8cSSatish Balay { 2172a30f8f8cSSatish Balay Mat mat; 2173a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2174dfbe8321SBarry Smith PetscErrorCode ierr; 2175d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2176387bc808SHong Zhang PetscScalar *array; 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay PetscFunctionBegin; 2179a30f8f8cSSatish Balay *newmat = 0; 218026fbe8dcSKarl Rupp 2181ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2182d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 21837adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 21841d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 21851e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 21861e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2187e1b6402fSHong Zhang 2188d5f3da31SBarry Smith mat->factortype = matin->factortype; 2189273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 219082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21917fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21927fff6886SHong Zhang 2193b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2194a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2195a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2196a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2197a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2198a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2199a30f8f8cSSatish Balay 2200899cda47SBarry Smith 2201a30f8f8cSSatish Balay a->size = oldmat->size; 2202a30f8f8cSSatish Balay a->rank = oldmat->rank; 2203a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2204a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2205a30f8f8cSSatish Balay a->rowindices = 0; 2206a30f8f8cSSatish Balay a->rowvalues = 0; 2207a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2208a30f8f8cSSatish Balay a->barray = 0; 2209899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2210899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2211899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2212899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2213a30f8f8cSSatish Balay 2214a30f8f8cSSatish Balay /* hash table stuff */ 2215a30f8f8cSSatish Balay a->ht = 0; 2216a30f8f8cSSatish Balay a->hd = 0; 2217a30f8f8cSSatish Balay a->ht_size = 0; 2218a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2219a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2220a30f8f8cSSatish Balay a->ht_total_ct = 0; 2221a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2222a30f8f8cSSatish Balay 2223899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2224a30f8f8cSSatish Balay if (oldmat->colmap) { 2225a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2226a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay #else 2228854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 22293bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 22301302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2231a30f8f8cSSatish Balay #endif 2232a30f8f8cSSatish Balay } else a->colmap = 0; 2233387bc808SHong Zhang 2234a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2235785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 22363bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 22371302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2238a30f8f8cSSatish Balay } else a->garray = 0; 2239a30f8f8cSSatish Balay 2240ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2241a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 22423bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2243a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 22443bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 224582327fa8SHong Zhang 224682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 22473bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 224882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 22493bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2250387bc808SHong Zhang 2251387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 22521ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2253778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2254778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 22551ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 22561ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2257778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 22581ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 22593bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 22603bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 22613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 22623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 22633bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2264387bc808SHong Zhang 2265387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2266387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2267387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 22683bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 226982327fa8SHong Zhang 2270a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 22713bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 22733bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2274140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2275a30f8f8cSSatish Balay *newmat = mat; 2276a30f8f8cSSatish Balay PetscFunctionReturn(0); 2277a30f8f8cSSatish Balay } 2278a30f8f8cSSatish Balay 22794a2ae208SSatish Balay #undef __FUNCT__ 22805bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2281112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 228295936485SShri Abhyankar { 228395936485SShri Abhyankar PetscErrorCode ierr; 228495936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 228595936485SShri Abhyankar PetscScalar *vals,*buf; 2286ce94432eSBarry Smith MPI_Comm comm; 228795936485SShri Abhyankar MPI_Status status; 2288adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2289adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 229095936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 22913059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 229295936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 229395936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 229495936485SShri Abhyankar int fd; 229595936485SShri Abhyankar 229695936485SShri Abhyankar PetscFunctionBegin; 2297ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 22980298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 22990298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 230095936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 23013059b6faSBarry Smith if (bs < 0) bs = 1; 230295936485SShri Abhyankar 230395936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 230495936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 230595936485SShri Abhyankar if (!rank) { 230695936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 230795936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 230895936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 230995936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 231095936485SShri Abhyankar } 231195936485SShri Abhyankar 231295936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 231395936485SShri Abhyankar 231495936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 231526fbe8dcSKarl Rupp M = header[1]; 231626fbe8dcSKarl Rupp N = header[2]; 231795936485SShri Abhyankar 231895936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 231995936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 232095936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 232195936485SShri Abhyankar 232295936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 232395936485SShri Abhyankar if (sizesset) { 232495936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 232595936485SShri Abhyankar } 2326abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2327abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 232895936485SShri Abhyankar 232995936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 233095936485SShri Abhyankar 233195936485SShri Abhyankar /* 233295936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 233395936485SShri Abhyankar divisible by the blocksize 233495936485SShri Abhyankar */ 233595936485SShri Abhyankar Mbs = M/bs; 233695936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 233795936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 233895936485SShri Abhyankar else Mbs++; 233995936485SShri Abhyankar if (extra_rows &&!rank) { 234095936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 234195936485SShri Abhyankar } 234295936485SShri Abhyankar 234395936485SShri Abhyankar /* determine ownership of all rows */ 234495936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 234595936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 234695936485SShri Abhyankar m = mbs*bs; 234795936485SShri Abhyankar } else { /* User Set */ 234895936485SShri Abhyankar m = newmat->rmap->n; 234995936485SShri Abhyankar mbs = m/bs; 235095936485SShri Abhyankar } 2351dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 23524dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 235395936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 235495936485SShri Abhyankar rowners[0] = 0; 235595936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 235695936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 235795936485SShri Abhyankar rstart = rowners[rank]; 235895936485SShri Abhyankar rend = rowners[rank+1]; 235995936485SShri Abhyankar 236095936485SShri Abhyankar /* distribute row lengths to all processors */ 2361785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 236295936485SShri Abhyankar if (!rank) { 2363854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 236495936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 236595936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2366785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 236795936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 236895936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 236995936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 237095936485SShri Abhyankar } else { 237195936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 237295936485SShri Abhyankar } 237395936485SShri Abhyankar 237495936485SShri Abhyankar if (!rank) { /* procs[0] */ 237595936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2376785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 237795936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 237895936485SShri Abhyankar for (i=0; i<size; i++) { 237995936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 238095936485SShri Abhyankar procsnz[i] += rowlengths[j]; 238195936485SShri Abhyankar } 238295936485SShri Abhyankar } 238395936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 238495936485SShri Abhyankar 238595936485SShri Abhyankar /* determine max buffer needed and allocate it */ 238695936485SShri Abhyankar maxnz = 0; 238795936485SShri Abhyankar for (i=0; i<size; i++) { 238895936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 238995936485SShri Abhyankar } 2390785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 239195936485SShri Abhyankar 239295936485SShri Abhyankar /* read in my part of the matrix column indices */ 239395936485SShri Abhyankar nz = procsnz[0]; 2394785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 239595936485SShri Abhyankar mycols = ibuf; 239695936485SShri Abhyankar if (size == 1) nz -= extra_rows; 239795936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 239826fbe8dcSKarl Rupp if (size == 1) { 239926fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 240026fbe8dcSKarl Rupp } 240195936485SShri Abhyankar 240295936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 240395936485SShri Abhyankar for (i=1; i<size-1; i++) { 240495936485SShri Abhyankar nz = procsnz[i]; 240595936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 240695936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 240795936485SShri Abhyankar } 240895936485SShri Abhyankar /* read in the stuff for the last proc */ 240995936485SShri Abhyankar if (size != 1) { 241095936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 241195936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 241295936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 241395936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 241495936485SShri Abhyankar } 241595936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 241695936485SShri Abhyankar } else { /* procs[i], i>0 */ 241795936485SShri Abhyankar /* determine buffer space needed for message */ 241895936485SShri Abhyankar nz = 0; 241926fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2420785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 242195936485SShri Abhyankar mycols = ibuf; 242295936485SShri Abhyankar /* receive message of column indices*/ 242395936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 242495936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 242595936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 242695936485SShri Abhyankar } 242795936485SShri Abhyankar 242895936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2429dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2430dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 243195936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 243295936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 243395936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 243495936485SShri Abhyankar rowcount = 0; 243595936485SShri Abhyankar nzcount = 0; 243695936485SShri Abhyankar for (i=0; i<mbs; i++) { 243795936485SShri Abhyankar dcount = 0; 243895936485SShri Abhyankar odcount = 0; 243995936485SShri Abhyankar for (j=0; j<bs; j++) { 244095936485SShri Abhyankar kmax = locrowlens[rowcount]; 244195936485SShri Abhyankar for (k=0; k<kmax; k++) { 244295936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 244395936485SShri Abhyankar if (!mask[tmp]) { 244495936485SShri Abhyankar mask[tmp] = 1; 244595936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 244695936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 244795936485SShri Abhyankar } 244895936485SShri Abhyankar } 244995936485SShri Abhyankar rowcount++; 245095936485SShri Abhyankar } 245195936485SShri Abhyankar 245295936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 245395936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 245495936485SShri Abhyankar 245595936485SShri Abhyankar /* zero out the mask elements we set */ 245695936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 245795936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 245895936485SShri Abhyankar } 245995936485SShri Abhyankar if (!sizesset) { 246095936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 246195936485SShri Abhyankar } 246295936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 24636816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 246495936485SShri Abhyankar 246595936485SShri Abhyankar if (!rank) { 2466785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 246795936485SShri Abhyankar /* read in my part of the matrix numerical values */ 246895936485SShri Abhyankar nz = procsnz[0]; 246995936485SShri Abhyankar vals = buf; 247095936485SShri Abhyankar mycols = ibuf; 247195936485SShri Abhyankar if (size == 1) nz -= extra_rows; 247295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 247326fbe8dcSKarl Rupp if (size == 1) { 247426fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 247526fbe8dcSKarl Rupp } 247695936485SShri Abhyankar 247795936485SShri Abhyankar /* insert into matrix */ 247895936485SShri Abhyankar jj = rstart*bs; 247995936485SShri Abhyankar for (i=0; i<m; i++) { 248095936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 248195936485SShri Abhyankar mycols += locrowlens[i]; 248295936485SShri Abhyankar vals += locrowlens[i]; 248395936485SShri Abhyankar jj++; 248495936485SShri Abhyankar } 248595936485SShri Abhyankar 248695936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 248795936485SShri Abhyankar for (i=1; i<size-1; i++) { 248895936485SShri Abhyankar nz = procsnz[i]; 248995936485SShri Abhyankar vals = buf; 249095936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 249195936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 249295936485SShri Abhyankar } 249395936485SShri Abhyankar /* the last proc */ 249495936485SShri Abhyankar if (size != 1) { 249595936485SShri Abhyankar nz = procsnz[i] - extra_rows; 249695936485SShri Abhyankar vals = buf; 249795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 249895936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 249995936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 250095936485SShri Abhyankar } 250195936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 250295936485SShri Abhyankar 250395936485SShri Abhyankar } else { 250495936485SShri Abhyankar /* receive numeric values */ 2505785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 250695936485SShri Abhyankar 250795936485SShri Abhyankar /* receive message of values*/ 250895936485SShri Abhyankar vals = buf; 250995936485SShri Abhyankar mycols = ibuf; 251095936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 251195936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 251295936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 251395936485SShri Abhyankar 251495936485SShri Abhyankar /* insert into matrix */ 251595936485SShri Abhyankar jj = rstart*bs; 251695936485SShri Abhyankar for (i=0; i<m; i++) { 251795936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 251895936485SShri Abhyankar mycols += locrowlens[i]; 251995936485SShri Abhyankar vals += locrowlens[i]; 252095936485SShri Abhyankar jj++; 252195936485SShri Abhyankar } 252295936485SShri Abhyankar } 252395936485SShri Abhyankar 252495936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 252595936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 252695936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 252795936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 252895936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 252995936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 253095936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 253195936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 253295936485SShri Abhyankar PetscFunctionReturn(0); 253395936485SShri Abhyankar } 253495936485SShri Abhyankar 253595936485SShri Abhyankar #undef __FUNCT__ 25364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2537dcf5cc72SBarry Smith /*XXXXX@ 2538a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2539a30f8f8cSSatish Balay 2540a30f8f8cSSatish Balay Input Parameters: 2541a30f8f8cSSatish Balay . mat - the matrix 2542a30f8f8cSSatish Balay . fact - factor 2543a30f8f8cSSatish Balay 2544c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2545a30f8f8cSSatish Balay 2546a30f8f8cSSatish Balay Level: advanced 2547a30f8f8cSSatish Balay 2548a30f8f8cSSatish Balay Notes: 2549a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2550a30f8f8cSSatish Balay 2551a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2552a30f8f8cSSatish Balay 2553a30f8f8cSSatish Balay .seealso: MatSetOption() 2554dcf5cc72SBarry Smith @XXXXX*/ 2555dcf5cc72SBarry Smith 255624d5174aSHong Zhang 25574a2ae208SSatish Balay #undef __FUNCT__ 2558985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2559985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 256024d5174aSHong Zhang { 256124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2562f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2563ca54ac64SHong Zhang PetscReal atmp; 256487828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2565dfbe8321SBarry Smith PetscErrorCode ierr; 25661302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25671302d50aSBarry Smith PetscMPIInt rank,size; 25681302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 256987828ca2SBarry Smith PetscScalar *va; 25708a1c53f2SBarry Smith MatScalar *ba; 2571f4c0e9e4SHong Zhang MPI_Status stat; 257224d5174aSHong Zhang 257324d5174aSHong Zhang PetscFunctionBegin; 2574e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 25750298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 25761ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2577f4c0e9e4SHong Zhang 2578ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2579ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2580f4c0e9e4SHong Zhang 2581d0f46423SBarry Smith bs = A->rmap->bs; 2582f4c0e9e4SHong Zhang mbs = a->mbs; 2583f4c0e9e4SHong Zhang Mbs = a->Mbs; 2584f4c0e9e4SHong Zhang ba = b->a; 2585f4c0e9e4SHong Zhang bi = b->i; 2586f4c0e9e4SHong Zhang bj = b->j; 2587f4c0e9e4SHong Zhang 2588f4c0e9e4SHong Zhang /* find ownerships */ 2589d0f46423SBarry Smith rowners_bs = A->rmap->range; 2590f4c0e9e4SHong Zhang 2591f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2592785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2593ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2594f4c0e9e4SHong Zhang 2595f4c0e9e4SHong Zhang /* row_max for B */ 2596b8475685SHong Zhang if (rank != size-1) { 2597f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2598f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2599f4c0e9e4SHong Zhang brow = bs*i; 2600f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2601f4c0e9e4SHong Zhang bcol = bs*(*bj); 2602f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2603ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 260404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2605f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2606f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2607ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2608ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2609f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2610f4c0e9e4SHong Zhang } 2611f4c0e9e4SHong Zhang } 2612f4c0e9e4SHong Zhang bj++; 2613f4c0e9e4SHong Zhang } 2614f4c0e9e4SHong Zhang } 2615f4c0e9e4SHong Zhang 2616f4c0e9e4SHong Zhang /* send values to its owners */ 2617f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2618f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2619ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2620ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2621ca54ac64SHong Zhang } 2622f4c0e9e4SHong Zhang } 2623f4c0e9e4SHong Zhang 2624f4c0e9e4SHong Zhang /* receive values */ 2625ca54ac64SHong Zhang if (rank) { 2626f4c0e9e4SHong Zhang rvalues = work; 2627ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2628f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2629ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2630f4c0e9e4SHong Zhang /* process values */ 2631f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2632ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2633f4c0e9e4SHong Zhang } 2634f4c0e9e4SHong Zhang } 2635ca54ac64SHong Zhang } 2636f4c0e9e4SHong Zhang 26371ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2638ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 263924d5174aSHong Zhang PetscFunctionReturn(0); 264024d5174aSHong Zhang } 26412798e883SHong Zhang 26422798e883SHong Zhang #undef __FUNCT__ 264341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 264441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 26452798e883SHong Zhang { 26462798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2647dfbe8321SBarry Smith PetscErrorCode ierr; 2648d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 26493649974fSBarry Smith PetscScalar *x,*ptr,*from; 2650ffe4fb16SHong Zhang Vec bb1; 26513649974fSBarry Smith const PetscScalar *b; 2652ffe4fb16SHong Zhang 2653ffe4fb16SHong Zhang PetscFunctionBegin; 2654e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2655e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2656ffe4fb16SHong Zhang 2657a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 265841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2659a2b30743SBarry Smith PetscFunctionReturn(0); 2660a2b30743SBarry Smith } 2661a2b30743SBarry Smith 2662ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2663ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 266441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2665ffe4fb16SHong Zhang its--; 2666ffe4fb16SHong Zhang } 2667ffe4fb16SHong Zhang 2668ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2669ffe4fb16SHong Zhang while (its--) { 2670ffe4fb16SHong Zhang 2671ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2672ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2673ffe4fb16SHong Zhang 2674ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26751ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 26761ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2677ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26781ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2679ffe4fb16SHong Zhang 2680efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2681ffe4fb16SHong Zhang 2682ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26831ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 26843649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2685ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26861ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2687ffe4fb16SHong Zhang 2688ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2689fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2690ffe4fb16SHong Zhang 2691ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26921ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2693a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2694ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2695ffe4fb16SHong Zhang 2696ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2697ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2698ffe4fb16SHong Zhang 2699ffe4fb16SHong Zhang /* local diagonal sweep */ 270041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2701ffe4fb16SHong Zhang } 27026bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2703fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 270441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2705fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 270641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2707fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2708fa22f6d0SBarry Smith Vec xx1; 2709ace3abfcSBarry Smith PetscBool hasop; 271020f1ed55SBarry Smith const PetscScalar *diag; 2711887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 271220f1ed55SBarry Smith PetscInt i,n; 2713fa22f6d0SBarry Smith 2714fa22f6d0SBarry Smith if (!mat->xx1) { 2715fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2716fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2717fa22f6d0SBarry Smith } 2718fa22f6d0SBarry Smith xx1 = mat->xx1; 2719fa22f6d0SBarry Smith bb1 = mat->bb1; 2720fa22f6d0SBarry Smith 272141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2722fa22f6d0SBarry Smith 2723fa22f6d0SBarry Smith if (!mat->diag) { 2724effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27252a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2726fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2727fa22f6d0SBarry Smith } 2728fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2729fa22f6d0SBarry Smith 2730fa22f6d0SBarry Smith if (hasop) { 2731fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2732887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 273320f1ed55SBarry Smith } else { 273420f1ed55SBarry Smith /* 273520f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 273620f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2737887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 273820f1ed55SBarry Smith */ 273920f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27403649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27413649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 274220f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 274320f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2744887ee2caSBarry Smith if (omega == 1.0) { 274526fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 274620f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2747887ee2caSBarry Smith } else { 274826fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2749887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2750887ee2caSBarry Smith } 275120f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27523649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27533649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 275420f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 275520f1ed55SBarry Smith } 2756fa22f6d0SBarry Smith 2757fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2758fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2759fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2760fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2761fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2762fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2763fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2764fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2765fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2766fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2767effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2768fa22f6d0SBarry Smith 2769fa22f6d0SBarry Smith /* local sweep */ 277041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2771fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2772f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2773ffe4fb16SHong Zhang PetscFunctionReturn(0); 2774ffe4fb16SHong Zhang } 2775ffe4fb16SHong Zhang 2776ffe4fb16SHong Zhang #undef __FUNCT__ 277741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 277841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2779ffe4fb16SHong Zhang { 2780ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2781dfbe8321SBarry Smith PetscErrorCode ierr; 27822798e883SHong Zhang Vec lvec1,bb1; 27832798e883SHong Zhang 27842798e883SHong Zhang PetscFunctionBegin; 2785e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2786e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 27872798e883SHong Zhang 2788c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 27892798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 279041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27912798e883SHong Zhang its--; 27922798e883SHong Zhang } 27932798e883SHong Zhang 27942798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27952798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27962798e883SHong Zhang while (its--) { 2797ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27982798e883SHong Zhang 27992798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 28002798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2801efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 28022798e883SHong Zhang 2803ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 28042798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2805ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 28062798e883SHong Zhang 28072798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2808efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 28092798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 28102798e883SHong Zhang 2811ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 28122798e883SHong Zhang 2813c14dc6b6SHong Zhang /* diagonal sweep */ 281441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 28152798e883SHong Zhang } 28166bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 28176bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 28186bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 28192798e883SHong Zhang PetscFunctionReturn(0); 28202798e883SHong Zhang } 28212798e883SHong Zhang 2822dfb205c3SBarry Smith #undef __FUNCT__ 2823dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2824dfb205c3SBarry Smith /*@ 2825dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2826dfb205c3SBarry Smith CSR format the local rows. 2827dfb205c3SBarry Smith 2828dfb205c3SBarry Smith Collective on MPI_Comm 2829dfb205c3SBarry Smith 2830dfb205c3SBarry Smith Input Parameters: 2831dfb205c3SBarry Smith + comm - MPI communicator 2832dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2833dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2834dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2835dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2836dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2837dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2838dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2839dfb205c3SBarry Smith . i - row indices 2840dfb205c3SBarry Smith . j - column indices 2841dfb205c3SBarry Smith - a - matrix values 2842dfb205c3SBarry Smith 2843dfb205c3SBarry Smith Output Parameter: 2844dfb205c3SBarry Smith . mat - the matrix 2845dfb205c3SBarry Smith 2846dfb205c3SBarry Smith Level: intermediate 2847dfb205c3SBarry Smith 2848dfb205c3SBarry Smith Notes: 2849dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2850dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2851dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2852dfb205c3SBarry Smith 2853dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2854dfb205c3SBarry Smith 2855dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2856dfb205c3SBarry Smith 2857dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 285869b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2859dfb205c3SBarry Smith @*/ 28607087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2861dfb205c3SBarry Smith { 2862dfb205c3SBarry Smith PetscErrorCode ierr; 2863dfb205c3SBarry Smith 2864dfb205c3SBarry Smith 2865dfb205c3SBarry Smith PetscFunctionBegin; 2866f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2867dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2868dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2869dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2870dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2871dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2872dfb205c3SBarry Smith PetscFunctionReturn(0); 2873dfb205c3SBarry Smith } 2874dfb205c3SBarry Smith 2875dfb205c3SBarry Smith 2876dfb205c3SBarry Smith #undef __FUNCT__ 2877dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2878dfb205c3SBarry Smith /*@C 2879dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2880dfb205c3SBarry Smith (the default parallel PETSc format). 2881dfb205c3SBarry Smith 2882dfb205c3SBarry Smith Collective on MPI_Comm 2883dfb205c3SBarry Smith 2884dfb205c3SBarry Smith Input Parameters: 28851c4f3114SJed Brown + B - the matrix 2886dfb205c3SBarry Smith . bs - the block size 2887dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2888dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2889dfb205c3SBarry Smith - v - optional values in the matrix 2890dfb205c3SBarry Smith 2891dfb205c3SBarry Smith Level: developer 2892dfb205c3SBarry Smith 2893dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2894dfb205c3SBarry Smith 289569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2896dfb205c3SBarry Smith @*/ 28977087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2898dfb205c3SBarry Smith { 28994ac538c5SBarry Smith PetscErrorCode ierr; 2900dfb205c3SBarry Smith 2901dfb205c3SBarry Smith PetscFunctionBegin; 29024ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2903dfb205c3SBarry Smith PetscFunctionReturn(0); 2904dfb205c3SBarry Smith } 2905dfb205c3SBarry Smith 2906de4b53ebSHong Zhang #undef __FUNCT__ 290710c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 290810c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 29094dcd73b1SHong Zhang { 29104dcd73b1SHong Zhang PetscErrorCode ierr; 291110c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 291210c56fdeSHong Zhang PetscInt *indx; 291310c56fdeSHong Zhang PetscScalar *values; 2914dfb205c3SBarry Smith 29154dcd73b1SHong Zhang PetscFunctionBegin; 29164dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 291710c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 291810c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 291910c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 292010c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 29214dcd73b1SHong Zhang 292210c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 292310c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 292410c56fdeSHong Zhang if (n == PETSC_DECIDE) { 292510c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 292610c56fdeSHong Zhang } 292710c56fdeSHong Zhang /* Check sum(n) = Nbs */ 292810c56fdeSHong Zhang ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 292910c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 293010c56fdeSHong Zhang 293110c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 293210c56fdeSHong Zhang rstart -= mbs; 29334dcd73b1SHong Zhang 29344dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 293510c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 2936e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 293710c56fdeSHong Zhang for (i=0; i<mbs; i++) { 29384dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 29394dcd73b1SHong Zhang nnz = nnz/bs; 29404dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 29414dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 29424dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 29434dcd73b1SHong Zhang } 2944e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 29454dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 29464dcd73b1SHong Zhang 29474dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 294810c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 29494dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 29504dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 29514dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 29524dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 29534dcd73b1SHong Zhang } 29544dcd73b1SHong Zhang 295510c56fdeSHong Zhang /* numeric phase */ 29564dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 295710c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 29584dcd73b1SHong Zhang 2959e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 29604dcd73b1SHong Zhang for (i=0; i<m; i++) { 29614dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29624dcd73b1SHong Zhang Ii = i + rstart; 296310c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 29644dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29654dcd73b1SHong Zhang } 2966e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 296710c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 296810c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29694dcd73b1SHong Zhang PetscFunctionReturn(0); 29704dcd73b1SHong Zhang } 2971