xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 1098a8e89b86e4e571cc99c2de7ce87e92a1d9fa)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
226214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
236214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
246214f412SHong Zhang #endif
25a30f8f8cSSatish Balay 
264a2ae208SSatish Balay #undef __FUNCT__
274a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
287087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
29a30f8f8cSSatish Balay {
30f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
31dfbe8321SBarry Smith   PetscErrorCode ierr;
32a30f8f8cSSatish Balay 
33a30f8f8cSSatish Balay   PetscFunctionBegin;
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
36a30f8f8cSSatish Balay   PetscFunctionReturn(0);
37a30f8f8cSSatish Balay }
38a30f8f8cSSatish Balay 
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
417087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
53a30f8f8cSSatish Balay   { \
54a30f8f8cSSatish Balay  \
55a30f8f8cSSatish Balay     brow = row/bs;  \
56a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
57a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
58a30f8f8cSSatish Balay     bcol = col/bs; \
59a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
60a30f8f8cSSatish Balay     low  = 0; high = nrow; \
61a30f8f8cSSatish Balay     while (high-low > 3) { \
62a30f8f8cSSatish Balay       t = (low+high)/2; \
63a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
64a30f8f8cSSatish Balay       else              low  = t; \
65a30f8f8cSSatish Balay     } \
66a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
67a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
68a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
69a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
70a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
71a30f8f8cSSatish Balay         else                    *bap  = value;  \
72a30f8f8cSSatish Balay         goto a_noinsert; \
73a30f8f8cSSatish Balay       } \
74a30f8f8cSSatish Balay     } \
75a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
76e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
77fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
78a30f8f8cSSatish Balay     N = nrow++ - 1;  \
79a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
80a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
81a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
82a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
83a30f8f8cSSatish Balay     } \
84a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
85a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
86a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
87e56f5c9eSBarry Smith     A->nonzerostate++;\
88a30f8f8cSSatish Balay a_noinsert:; \
89a30f8f8cSSatish Balay     ailen[brow] = nrow; \
90a30f8f8cSSatish Balay   }
91e5e170daSBarry Smith 
92a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
93a30f8f8cSSatish Balay   { \
94a30f8f8cSSatish Balay     brow = row/bs;  \
95a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
96a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
97a30f8f8cSSatish Balay     bcol = col/bs; \
98a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
99a30f8f8cSSatish Balay     low  = 0; high = nrow; \
100a30f8f8cSSatish Balay     while (high-low > 3) { \
101a30f8f8cSSatish Balay       t = (low+high)/2; \
102a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
103a30f8f8cSSatish Balay       else              low  = t; \
104a30f8f8cSSatish Balay     } \
105a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
106a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
107a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
108a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
109a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
110a30f8f8cSSatish Balay         else                    *bap  = value;  \
111a30f8f8cSSatish Balay         goto b_noinsert; \
112a30f8f8cSSatish Balay       } \
113a30f8f8cSSatish Balay     } \
114a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
115e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
116fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
117a30f8f8cSSatish Balay     N = nrow++ - 1;  \
118a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
119a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
120a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
121a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
122a30f8f8cSSatish Balay     } \
123a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
124a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
125a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
126e56f5c9eSBarry Smith     B->nonzerostate++;\
127a30f8f8cSSatish Balay b_noinsert:; \
128a30f8f8cSSatish Balay     bilen[brow] = nrow; \
129a30f8f8cSSatish Balay   }
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
132a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
133a30f8f8cSSatish Balay */
1344a2ae208SSatish Balay #undef __FUNCT__
135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
137a30f8f8cSSatish Balay {
138a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
139a30f8f8cSSatish Balay   MatScalar      value;
140ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
1421302d50aSBarry Smith   PetscInt       i,j,row,col;
143d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
144d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
145d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   /* Some Variables required in the macro */
148a30f8f8cSSatish Balay   Mat          A     = baij->A;
149a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1501302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
151a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
152a30f8f8cSSatish Balay 
153a30f8f8cSSatish Balay   Mat         B     = baij->B;
154a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1551302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
156a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
157a30f8f8cSSatish Balay 
1581302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1591302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
160a30f8f8cSSatish Balay   MatScalar *ap,*bap;
161a30f8f8cSSatish Balay 
162a30f8f8cSSatish Balay   /* for stash */
1630298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1640298fd71SBarry Smith   MatScalar *v_loc = NULL;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
167a30f8f8cSSatish Balay   if (!baij->donotstash) {
16859ffdab8SBarry Smith     if (n > baij->n_loc) {
16959ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17059ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
171785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
172785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
17326fbe8dcSKarl Rupp 
17459ffdab8SBarry Smith       baij->n_loc = n;
17559ffdab8SBarry Smith     }
17659ffdab8SBarry Smith     in_loc = baij->in_loc;
17759ffdab8SBarry Smith     v_loc  = baij->v_loc;
178a30f8f8cSSatish Balay   }
179a30f8f8cSSatish Balay 
180a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
181a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
183e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
184a30f8f8cSSatish Balay #endif
185a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
186a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
187a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18801b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
18901b2bd88SHong Zhang           if (a->ignore_ltriangular) {
19001b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19126fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19201b2bd88SHong Zhang         }
193a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
194a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
195a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
196a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
197db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
198db4deed7SKarl Rupp           else             value = v[i+j*m];
199a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
200a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
201a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
203cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
204a30f8f8cSSatish Balay #endif
205a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
206a30f8f8cSSatish Balay           if (mat->was_assembled) {
207a30f8f8cSSatish Balay             if (!baij->colmap) {
208ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
209a30f8f8cSSatish Balay             }
210a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
211a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21271730473SSatish Balay             col  = col - 1;
213a30f8f8cSSatish Balay #else
21471730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
215a30f8f8cSSatish Balay #endif
216a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
217ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
218a30f8f8cSSatish Balay               col  =  in[j];
219a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
220a30f8f8cSSatish Balay               B    = baij->B;
221a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
222a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
223a30f8f8cSSatish Balay               ba   = b->a;
22471730473SSatish Balay             } else col += in[j]%bs;
225a30f8f8cSSatish Balay           } else col = in[j];
226db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
227db4deed7SKarl Rupp           else             value = v[i+j*m];
228a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
229a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
230a30f8f8cSSatish Balay         }
231a30f8f8cSSatish Balay       }
232a30f8f8cSSatish Balay     } else {  /* off processor entry */
2334cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
234a30f8f8cSSatish Balay       if (!baij->donotstash) {
2355080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
236a30f8f8cSSatish Balay         n_loc          = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
261ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if (!barray) {
269785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
281e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
286f3f98c53SJed Brown         if (im[i] > in[j]) {
287f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
288e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
289f3f98c53SJed Brown         }
2900880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2910880e062SHong Zhang         if ((roworiented) && (n == 1)) {
292f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2930880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
294f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2950880e062SHong Zhang         } else { /* Here a copy is required */
2960880e062SHong Zhang           if (roworiented) {
2970880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2980880e062SHong Zhang           } else {
2990880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3000880e062SHong Zhang           }
3010880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3020880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3030880e062SHong Zhang               *barray++ = *value++;
3040880e062SHong Zhang             }
3050880e062SHong Zhang           }
3060880e062SHong Zhang           barray -=bs2;
3070880e062SHong Zhang         }
3080880e062SHong Zhang 
3090880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
3100880e062SHong Zhang           col  = in[j] - cstart;
3110880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
31226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
314cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3150880e062SHong Zhang #endif
3160880e062SHong Zhang         else {
3170880e062SHong Zhang           if (mat->was_assembled) {
3180880e062SHong Zhang             if (!baij->colmap) {
319ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3200880e062SHong Zhang             }
3210880e062SHong Zhang 
3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3230880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3241302d50aSBarry Smith             { PetscInt data;
3250880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
326e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang             }
3280880e062SHong Zhang #else
329e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3300880e062SHong Zhang #endif
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3330880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3340880e062SHong Zhang             col  = (col - 1)/bs;
3350880e062SHong Zhang #else
3360880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3370880e062SHong Zhang #endif
3380880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
339ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3400880e062SHong Zhang               col  = in[j];
3410880e062SHong Zhang             }
34226fbe8dcSKarl Rupp           } else col = in[j];
343e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3440880e062SHong Zhang         }
3450880e062SHong Zhang       }
3460880e062SHong Zhang     } else {
3474cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3480880e062SHong Zhang       if (!baij->donotstash) {
3490880e062SHong Zhang         if (roworiented) {
3500880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3510880e062SHong Zhang         } else {
3520880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         }
3540880e062SHong Zhang       }
3550880e062SHong Zhang     }
3560880e062SHong Zhang   }
3570880e062SHong Zhang   PetscFunctionReturn(0);
358a30f8f8cSSatish Balay }
359a30f8f8cSSatish Balay 
3604a2ae208SSatish Balay #undef __FUNCT__
3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
363a30f8f8cSSatish Balay {
364f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3656849ba73SBarry Smith   PetscErrorCode ierr;
366d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
367d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
368a30f8f8cSSatish Balay 
369a30f8f8cSSatish Balay   PetscFunctionBegin;
370a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
371e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
372e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
373a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
374a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
375a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
376e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
377e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
378a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
379a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
380c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
381a30f8f8cSSatish Balay         } else {
382a30f8f8cSSatish Balay           if (!baij->colmap) {
383ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           }
385a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
386a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
387a30f8f8cSSatish Balay           data--;
388a30f8f8cSSatish Balay #else
389a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
390a30f8f8cSSatish Balay #endif
391a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
392a30f8f8cSSatish Balay           else {
393a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
394e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
395a30f8f8cSSatish Balay           }
396a30f8f8cSSatish Balay         }
397a30f8f8cSSatish Balay       }
398f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
399a30f8f8cSSatish Balay   }
400a30f8f8cSSatish Balay   PetscFunctionReturn(0);
401a30f8f8cSSatish Balay }
402a30f8f8cSSatish Balay 
4034a2ae208SSatish Balay #undef __FUNCT__
4044a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
405dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
406a30f8f8cSSatish Balay {
407a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
408dfbe8321SBarry Smith   PetscErrorCode ierr;
409a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
410a30f8f8cSSatish Balay 
411a30f8f8cSSatish Balay   PetscFunctionBegin;
412a30f8f8cSSatish Balay   if (baij->size == 1) {
413a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
414a30f8f8cSSatish Balay   } else {
415a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
416785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
418a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
419a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
421ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4228f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
423a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
4240b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4250b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4260b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4270b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
428899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
429d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4300b8dc8d2SHong Zhang       MatScalar    *v;
4310b8dc8d2SHong Zhang 
432dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
433d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4340b8dc8d2SHong Zhang       /* Amat */
4350b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4360b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4370b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4380b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
4390b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4400b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4410b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4420b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4430b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4440b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4450b8dc8d2SHong Zhang               /* non-diagonal block */
4460b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4470b8dc8d2SHong Zhang             }
4480b8dc8d2SHong Zhang           }
4490b8dc8d2SHong Zhang         }
4500b8dc8d2SHong Zhang       }
4510b8dc8d2SHong Zhang       /* Bmat */
4520b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4530b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4540b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4550b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4560b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4570b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4580b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4590b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4600b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4610b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4620b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4630b8dc8d2SHong Zhang             }
4640b8dc8d2SHong Zhang           }
4650b8dc8d2SHong Zhang         }
4660b8dc8d2SHong Zhang       }
467ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4680b8dc8d2SHong Zhang       *norm = 0.0;
469d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4700b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4710b8dc8d2SHong Zhang       }
47274ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
473f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
474a30f8f8cSSatish Balay   }
475a30f8f8cSSatish Balay   PetscFunctionReturn(0);
476a30f8f8cSSatish Balay }
477a30f8f8cSSatish Balay 
4784a2ae208SSatish Balay #undef __FUNCT__
4794a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
480dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
481a30f8f8cSSatish Balay {
482a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
483dfbe8321SBarry Smith   PetscErrorCode ierr;
4841302d50aSBarry Smith   PetscInt       nstash,reallocs;
485a30f8f8cSSatish Balay   InsertMode     addv;
486a30f8f8cSSatish Balay 
487a30f8f8cSSatish Balay   PetscFunctionBegin;
48826fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
489a30f8f8cSSatish Balay 
490a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
491ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
492ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
493a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
494a30f8f8cSSatish Balay 
495d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
4961e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
497a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4981e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
499a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5001e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
501a30f8f8cSSatish Balay   PetscFunctionReturn(0);
502a30f8f8cSSatish Balay }
503a30f8f8cSSatish Balay 
5044a2ae208SSatish Balay #undef __FUNCT__
5054a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
506dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
507a30f8f8cSSatish Balay {
508a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
509a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
5106849ba73SBarry Smith   PetscErrorCode ierr;
51113f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
512e44c0bd4SBarry Smith   PetscInt       *row,*col;
513ace3abfcSBarry Smith   PetscBool      other_disassembled;
51413f74950SBarry Smith   PetscMPIInt    n;
515ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
516a30f8f8cSSatish Balay   MatScalar      *val;
517a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
518a30f8f8cSSatish Balay 
51991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
520a30f8f8cSSatish Balay   PetscFunctionBegin;
5214cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
522a30f8f8cSSatish Balay     while (1) {
523a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
524a30f8f8cSSatish Balay       if (!flg) break;
525a30f8f8cSSatish Balay 
526a30f8f8cSSatish Balay       for (i=0; i<n;) {
527a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
52826fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
52926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
53026fbe8dcSKarl Rupp         }
531a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
532a30f8f8cSSatish Balay         else       ncols = n-i;
533a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
534dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
535a30f8f8cSSatish Balay         i    = j;
536a30f8f8cSSatish Balay       }
537a30f8f8cSSatish Balay     }
538a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
539a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
540a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
541a30f8f8cSSatish Balay        restore the original flags */
542a30f8f8cSSatish Balay     r1 = baij->roworiented;
543a30f8f8cSSatish Balay     r2 = a->roworiented;
54491c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
54526fbe8dcSKarl Rupp 
546a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
547a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
54826fbe8dcSKarl Rupp 
54991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
550a30f8f8cSSatish Balay     while (1) {
551a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
552a30f8f8cSSatish Balay       if (!flg) break;
553a30f8f8cSSatish Balay 
554a30f8f8cSSatish Balay       for (i=0; i<n;) {
555a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
55626fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
55726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
55826fbe8dcSKarl Rupp         }
559a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
560a30f8f8cSSatish Balay         else       ncols = n-i;
561dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
562a30f8f8cSSatish Balay         i    = j;
563a30f8f8cSSatish Balay       }
564a30f8f8cSSatish Balay     }
565a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
56626fbe8dcSKarl Rupp 
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56926fbe8dcSKarl Rupp 
57091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
571a30f8f8cSSatish Balay   }
572a30f8f8cSSatish Balay 
573a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay 
576a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
577a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
578a30f8f8cSSatish Balay   /*
579a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
580a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
581a30f8f8cSSatish Balay   */
582a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
583ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
584a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
585ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
586a30f8f8cSSatish Balay     }
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay 
589a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
591a30f8f8cSSatish Balay   }
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
59574ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
59626fbe8dcSKarl Rupp 
597a30f8f8cSSatish Balay   baij->rowvalues = 0;
5984f9cfa9eSBarry Smith 
5994f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
6004f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
601e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
60209e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
603e56f5c9eSBarry Smith   }
604a30f8f8cSSatish Balay   PetscFunctionReturn(0);
605a30f8f8cSSatish Balay }
606a30f8f8cSSatish Balay 
6077da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
608dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6099804daf3SBarry Smith #include <petscdraw.h>
6104a2ae208SSatish Balay #undef __FUNCT__
6114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6126849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
613a30f8f8cSSatish Balay {
614a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
615dfbe8321SBarry Smith   PetscErrorCode    ierr;
616d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
6177da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
618ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
619b0a32e0cSBarry Smith   PetscViewer       sviewer;
620f3ef73ceSBarry Smith   PetscViewerFormat format;
621a30f8f8cSSatish Balay 
622a30f8f8cSSatish Balay   PetscFunctionBegin;
623251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
624251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
62532077d6dSBarry Smith   if (iascii) {
626b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
627456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
628a30f8f8cSSatish Balay       MatInfo info;
629ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
630a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6317b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6327b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
634e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
635a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
636e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
637b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6387b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63907d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
640a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
641a30f8f8cSSatish Balay       PetscFunctionReturn(0);
642fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
64377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
644a30f8f8cSSatish Balay       PetscFunctionReturn(0);
645c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
646c1490034SHong Zhang       PetscFunctionReturn(0);
647a30f8f8cSSatish Balay     }
648a30f8f8cSSatish Balay   }
649a30f8f8cSSatish Balay 
650a30f8f8cSSatish Balay   if (isdraw) {
651b0a32e0cSBarry Smith     PetscDraw draw;
652ace3abfcSBarry Smith     PetscBool isnull;
653b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
654b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
655a30f8f8cSSatish Balay   }
656a30f8f8cSSatish Balay 
6577da1fb6eSBarry Smith   {
658a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
659a30f8f8cSSatish Balay     Mat          A;
66065d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
66165d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
662d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
663a30f8f8cSSatish Balay     MatScalar    *a;
6643e219373SBarry Smith     const char   *matname;
665a30f8f8cSSatish Balay 
666f204ca49SKris Buschelman     /* Should this be the same type as mat? */
667ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     if (!rank) {
669f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
670a30f8f8cSSatish Balay     } else {
671f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
672a30f8f8cSSatish Balay     }
673f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
6740298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
6752b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
6763bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay     /* copy over the A part */
67965d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
680a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
681785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
682a30f8f8cSSatish Balay 
683a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
684e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
68526fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
686a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
687e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
688a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
689dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
69026fbe8dcSKarl Rupp           col++;
69126fbe8dcSKarl Rupp           a += bs;
692a30f8f8cSSatish Balay         }
693a30f8f8cSSatish Balay       }
694a30f8f8cSSatish Balay     }
695a30f8f8cSSatish Balay     /* copy over the B part */
69665d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69765d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
698a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
699e9f7bc9eSHong Zhang 
700e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
70126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
702a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
703a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
704a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
705799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
70626fbe8dcSKarl Rupp           col++;
70726fbe8dcSKarl Rupp           a += bs;
708a30f8f8cSSatish Balay         }
709a30f8f8cSSatish Balay       }
710a30f8f8cSSatish Balay     }
711a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
712a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
714a30f8f8cSSatish Balay     /*
715a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
716b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
717a30f8f8cSSatish Balay     */
718b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
719ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
7203e219373SBarry Smith     if (!rank) {
721ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
7227da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
723a30f8f8cSSatish Balay     }
724b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7256bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
726a30f8f8cSSatish Balay   }
727a30f8f8cSSatish Balay   PetscFunctionReturn(0);
728a30f8f8cSSatish Balay }
729a30f8f8cSSatish Balay 
7304a2ae208SSatish Balay #undef __FUNCT__
7314a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
732dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
733a30f8f8cSSatish Balay {
734dfbe8321SBarry Smith   PetscErrorCode ierr;
735ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
736a30f8f8cSSatish Balay 
737a30f8f8cSSatish Balay   PetscFunctionBegin;
738251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
739251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
740251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
741251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
74232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
743a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
744a30f8f8cSSatish Balay   }
745a30f8f8cSSatish Balay   PetscFunctionReturn(0);
746a30f8f8cSSatish Balay }
747a30f8f8cSSatish Balay 
7484a2ae208SSatish Balay #undef __FUNCT__
7494a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
750dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
751a30f8f8cSSatish Balay {
752a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
753dfbe8321SBarry Smith   PetscErrorCode ierr;
754a30f8f8cSSatish Balay 
755a30f8f8cSSatish Balay   PetscFunctionBegin;
756a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
757d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
758a30f8f8cSSatish Balay #endif
759a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
760a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7616bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7626bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
763a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
7646bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
765a30f8f8cSSatish Balay #else
76605b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
767a30f8f8cSSatish Balay #endif
76805b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7726bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7736bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7746bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7756bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7766bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7775755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77805b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77905b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7806bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7816bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7826bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
783ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
78405b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
785a30f8f8cSSatish Balay #endif
78659ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78759ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
788899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
789bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
790901853e0SKris Buschelman 
791dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
792bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
793bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
794bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
795bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
796bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
7976214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
7986214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
7996214f412SHong Zhang #endif
800a30f8f8cSSatish Balay   PetscFunctionReturn(0);
801a30f8f8cSSatish Balay }
802a30f8f8cSSatish Balay 
8034a2ae208SSatish Balay #undef __FUNCT__
804547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
805547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
806547795f9SHong Zhang {
807547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
808547795f9SHong Zhang   PetscErrorCode ierr;
809547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
810547795f9SHong Zhang   PetscScalar    *x,*from;
811547795f9SHong Zhang 
812547795f9SHong Zhang   PetscFunctionBegin;
813547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
814e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
815547795f9SHong Zhang 
816547795f9SHong Zhang   /* diagonal part */
817547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
818547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
819547795f9SHong Zhang 
820547795f9SHong Zhang   /* subdiagonal part */
821547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
822547795f9SHong Zhang 
823547795f9SHong Zhang   /* copy x into the vec slvec0 */
824547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
825547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
826547795f9SHong Zhang 
827547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
828547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
829547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
830547795f9SHong Zhang 
831547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
832547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
833547795f9SHong Zhang   /* supperdiagonal part */
834547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
835547795f9SHong Zhang   PetscFunctionReturn(0);
836547795f9SHong Zhang }
837547795f9SHong Zhang 
838547795f9SHong Zhang #undef __FUNCT__
839a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
840dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
841a9d4b620SHong Zhang {
842a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
843dfbe8321SBarry Smith   PetscErrorCode    ierr;
844d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
845d9ca1df4SBarry Smith   PetscScalar       *from;
846d9ca1df4SBarry Smith   const PetscScalar *x;
847a9d4b620SHong Zhang 
848a9d4b620SHong Zhang   PetscFunctionBegin;
849a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
850e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
851a9d4b620SHong Zhang 
852a9d4b620SHong Zhang   /* diagonal part */
853a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
854fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
855a9d4b620SHong Zhang 
856a9d4b620SHong Zhang   /* subdiagonal part */
857a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
858fc165ae2SBarry Smith 
859a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8601ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
861d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
862a9d4b620SHong Zhang 
863fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
864fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
865d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
866fc165ae2SBarry Smith 
867fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
868ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
869a9d4b620SHong Zhang   /* supperdiagonal part */
870a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
871a9d4b620SHong Zhang   PetscFunctionReturn(0);
872a9d4b620SHong Zhang }
873a9d4b620SHong Zhang 
874a9d4b620SHong Zhang #undef __FUNCT__
87540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
876dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
877a30f8f8cSSatish Balay {
878a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
879dfbe8321SBarry Smith   PetscErrorCode ierr;
8801302d50aSBarry Smith   PetscInt       nt;
881a30f8f8cSSatish Balay 
882a30f8f8cSSatish Balay   PetscFunctionBegin;
883a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
884e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
885e7e72b3dSBarry Smith 
886a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
887e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88865d70643SHong Zhang 
889ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
890b941877fSHong Zhang   /* do diagonal part */
891b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
892b941877fSHong Zhang   /* do supperdiagonal part */
893ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
894b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
895b941877fSHong Zhang   /* do subdiagonal part */
896b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
897ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
898ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
899a30f8f8cSSatish Balay   PetscFunctionReturn(0);
900a30f8f8cSSatish Balay }
901a30f8f8cSSatish Balay 
9024a2ae208SSatish Balay #undef __FUNCT__
9034a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
904dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
905a30f8f8cSSatish Balay {
906de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
907dfbe8321SBarry Smith   PetscErrorCode    ierr;
908d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
909d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
910d9ca1df4SBarry Smith   const PetscScalar *x;
911a9d4b620SHong Zhang 
912a9d4b620SHong Zhang   PetscFunctionBegin;
913a9d4b620SHong Zhang   /*
914ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
9150ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
916a9d4b620SHong Zhang   */
917a9d4b620SHong Zhang   /* diagonal part */
918a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9192dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
920a9d4b620SHong Zhang 
921a9d4b620SHong Zhang   /* subdiagonal part */
922a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
923a9d4b620SHong Zhang 
924a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9251ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
926d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
927a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9281ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
929a9d4b620SHong Zhang 
930ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
931d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
932ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
933a9d4b620SHong Zhang 
934a9d4b620SHong Zhang   /* supperdiagonal part */
935a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
936a9d4b620SHong Zhang   PetscFunctionReturn(0);
937a9d4b620SHong Zhang }
938a9d4b620SHong Zhang 
939a9d4b620SHong Zhang #undef __FUNCT__
940a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
941dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
942a9d4b620SHong Zhang {
943a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
944dfbe8321SBarry Smith   PetscErrorCode ierr;
945a30f8f8cSSatish Balay 
946a30f8f8cSSatish Balay   PetscFunctionBegin;
947ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
948b941877fSHong Zhang   /* do diagonal part */
949b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
950b941877fSHong Zhang   /* do supperdiagonal part */
951ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
952de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
953de8b6608SHong Zhang 
954b941877fSHong Zhang   /* do subdiagonal part */
955a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
956ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
957ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
958a30f8f8cSSatish Balay   PetscFunctionReturn(0);
959a30f8f8cSSatish Balay }
960a30f8f8cSSatish Balay 
961a30f8f8cSSatish Balay /*
962a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
963a30f8f8cSSatish Balay    diagonal block
964a30f8f8cSSatish Balay */
9654a2ae208SSatish Balay #undef __FUNCT__
9664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
967dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
968a30f8f8cSSatish Balay {
969a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
970dfbe8321SBarry Smith   PetscErrorCode ierr;
971a30f8f8cSSatish Balay 
972a30f8f8cSSatish Balay   PetscFunctionBegin;
973e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
974a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
975a30f8f8cSSatish Balay   PetscFunctionReturn(0);
976a30f8f8cSSatish Balay }
977a30f8f8cSSatish Balay 
9784a2ae208SSatish Balay #undef __FUNCT__
9794a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
980f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
981a30f8f8cSSatish Balay {
982a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
983dfbe8321SBarry Smith   PetscErrorCode ierr;
984a30f8f8cSSatish Balay 
985a30f8f8cSSatish Balay   PetscFunctionBegin;
986f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
987f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
988a30f8f8cSSatish Balay   PetscFunctionReturn(0);
989a30f8f8cSSatish Balay }
990a30f8f8cSSatish Balay 
9914a2ae208SSatish Balay #undef __FUNCT__
9924a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9931302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
994a30f8f8cSSatish Balay {
995d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
996d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
997d0d4cfc2SHong Zhang   PetscErrorCode ierr;
998d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
999d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1000899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1001d0d4cfc2SHong Zhang 
1002a30f8f8cSSatish Balay   PetscFunctionBegin;
1003e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1004d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1005d0d4cfc2SHong Zhang 
1006d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1007d0d4cfc2SHong Zhang     /*
1008d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1009d0d4cfc2SHong Zhang     */
1010d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1011d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1012d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1013d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1014d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
101526fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1016d0d4cfc2SHong Zhang     }
1017dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1018d0d4cfc2SHong Zhang   }
1019d0d4cfc2SHong Zhang 
1020e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1021d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1022d0d4cfc2SHong Zhang 
1023d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1024d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1025d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1026d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1027d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1028d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1029d0d4cfc2SHong Zhang 
1030d0d4cfc2SHong Zhang   cmap = mat->garray;
1031d0d4cfc2SHong Zhang   if (v  || idx) {
1032d0d4cfc2SHong Zhang     if (nztot) {
1033d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1034d0d4cfc2SHong Zhang       PetscInt imark = -1;
1035d0d4cfc2SHong Zhang       if (v) {
1036d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1037d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1038d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1039d0d4cfc2SHong Zhang           else break;
1040d0d4cfc2SHong Zhang         }
1041d0d4cfc2SHong Zhang         imark = i;
1042d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1043d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1044d0d4cfc2SHong Zhang       }
1045d0d4cfc2SHong Zhang       if (idx) {
1046d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1047d0d4cfc2SHong Zhang         if (imark > -1) {
1048d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1049d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1050d0d4cfc2SHong Zhang           }
1051d0d4cfc2SHong Zhang         } else {
1052d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
105326fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1054d0d4cfc2SHong Zhang             else break;
1055d0d4cfc2SHong Zhang           }
1056d0d4cfc2SHong Zhang           imark = i;
1057d0d4cfc2SHong Zhang         }
1058d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1059d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1060d0d4cfc2SHong Zhang       }
1061d0d4cfc2SHong Zhang     } else {
1062d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1063d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1064d0d4cfc2SHong Zhang     }
1065d0d4cfc2SHong Zhang   }
1066d0d4cfc2SHong Zhang   *nz  = nztot;
1067d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1068d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1069a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1070a30f8f8cSSatish Balay }
1071a30f8f8cSSatish Balay 
10724a2ae208SSatish Balay #undef __FUNCT__
10734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10741302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1075a30f8f8cSSatish Balay {
1076a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1077a30f8f8cSSatish Balay 
1078a30f8f8cSSatish Balay   PetscFunctionBegin;
1079e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1080a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1081a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1082a30f8f8cSSatish Balay }
1083a30f8f8cSSatish Balay 
10844a2ae208SSatish Balay #undef __FUNCT__
1085d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1086d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1087d0d4cfc2SHong Zhang {
1088d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1089d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1090d0d4cfc2SHong Zhang 
1091d0d4cfc2SHong Zhang   PetscFunctionBegin;
1092d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1093d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1094d0d4cfc2SHong Zhang }
1095d0d4cfc2SHong Zhang #undef __FUNCT__
1096d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1097d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1098d0d4cfc2SHong Zhang {
1099d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1100d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1101d0d4cfc2SHong Zhang 
1102d0d4cfc2SHong Zhang   PetscFunctionBegin;
1103d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1104d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1105d0d4cfc2SHong Zhang }
1106d0d4cfc2SHong Zhang 
1107d0d4cfc2SHong Zhang #undef __FUNCT__
110899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
111099cafbc1SBarry Smith {
111199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111299cafbc1SBarry Smith   PetscErrorCode ierr;
111399cafbc1SBarry Smith 
111499cafbc1SBarry Smith   PetscFunctionBegin;
111599cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111699cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111799cafbc1SBarry Smith   PetscFunctionReturn(0);
111899cafbc1SBarry Smith }
111999cafbc1SBarry Smith 
112099cafbc1SBarry Smith #undef __FUNCT__
112199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112399cafbc1SBarry Smith {
112499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112599cafbc1SBarry Smith   PetscErrorCode ierr;
112699cafbc1SBarry Smith 
112799cafbc1SBarry Smith   PetscFunctionBegin;
112899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
113099cafbc1SBarry Smith   PetscFunctionReturn(0);
113199cafbc1SBarry Smith }
113299cafbc1SBarry Smith 
113336032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ()
113436032a97SHong Zhang    Input: isrow       - distributed(parallel),
113536032a97SHong Zhang           iscol_local - locally owned (seq)
113636032a97SHong Zhang */
113799cafbc1SBarry Smith #undef __FUNCT__
113836032a97SHong Zhang #define __FUNCT__ "ISEqual_private"
113936032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
11408f46ffcaSHong Zhang {
11418f46ffcaSHong Zhang   PetscErrorCode ierr;
11428f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
11438f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
114436032a97SHong Zhang 
114536032a97SHong Zhang   PetscFunctionBegin;
11468f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
11478f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
1148*1098a8e8SHong Zhang   if (sz1 > sz2) {
1149*1098a8e8SHong Zhang     *flg = PETSC_FALSE;
1150*1098a8e8SHong Zhang     PetscFunctionReturn(0);
1151*1098a8e8SHong Zhang   }
11528f46ffcaSHong Zhang 
11538f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
11548f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
11558f46ffcaSHong Zhang 
11568f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
11578f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
11588f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
11598f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
11608f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
11618f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
11628f46ffcaSHong Zhang 
11638f46ffcaSHong Zhang   nmatch=0;
11648f46ffcaSHong Zhang   k     = 0;
11658f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
11668f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
11678f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
11688f46ffcaSHong Zhang         k = j; nmatch++;
11698f46ffcaSHong Zhang         break;
11708f46ffcaSHong Zhang       }
11718f46ffcaSHong Zhang     }
11728f46ffcaSHong Zhang   }
11738f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
11748f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
11758f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
11768f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
1177*1098a8e8SHong Zhang   if (nmatch < sz1) {
1178*1098a8e8SHong Zhang     *flg = PETSC_FALSE;
1179*1098a8e8SHong Zhang   } else {
1180*1098a8e8SHong Zhang     *flg = PETSC_TRUE;
1181*1098a8e8SHong Zhang   }
118236032a97SHong Zhang   PetscFunctionReturn(0);
11838f46ffcaSHong Zhang }
118436032a97SHong Zhang 
118536032a97SHong Zhang #undef __FUNCT__
118636032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
118736032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
118836032a97SHong Zhang {
118936032a97SHong Zhang   PetscErrorCode ierr;
119036032a97SHong Zhang   IS             iscol_local;
119136032a97SHong Zhang   PetscInt       csize;
119236032a97SHong Zhang   PetscBool      isequal;
119336032a97SHong Zhang 
119436032a97SHong Zhang   PetscFunctionBegin;
119536032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
119636032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
119736032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
119836032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
119936032a97SHong Zhang   } else {
120036032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
120136032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
120236032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
12038f46ffcaSHong Zhang   }
12048f46ffcaSHong Zhang 
12058f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
120636032a97SHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
12078f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
12088f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
12098f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
12108f46ffcaSHong Zhang   }
12118f46ffcaSHong Zhang   PetscFunctionReturn(0);
12128f46ffcaSHong Zhang }
12138f46ffcaSHong Zhang 
12148f46ffcaSHong Zhang #undef __FUNCT__
12154a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1216dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1217a30f8f8cSSatish Balay {
1218a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1219dfbe8321SBarry Smith   PetscErrorCode ierr;
1220a30f8f8cSSatish Balay 
1221a30f8f8cSSatish Balay   PetscFunctionBegin;
1222a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1223a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1224a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1225a30f8f8cSSatish Balay }
1226a30f8f8cSSatish Balay 
12274a2ae208SSatish Balay #undef __FUNCT__
12284a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1229dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1230a30f8f8cSSatish Balay {
1231a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1232a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1233dfbe8321SBarry Smith   PetscErrorCode ierr;
1234a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1235a30f8f8cSSatish Balay 
1236a30f8f8cSSatish Balay   PetscFunctionBegin;
1237d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
123826fbe8dcSKarl Rupp 
1239a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
124026fbe8dcSKarl Rupp 
1241a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1242a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
124326fbe8dcSKarl Rupp 
1244a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
124526fbe8dcSKarl Rupp 
1246a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1247a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1248a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1249a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1250a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1251a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1252a30f8f8cSSatish Balay     info->memory       = isend[3];
1253a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1254a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1255ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
125626fbe8dcSKarl Rupp 
1257a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1258a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1259a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1260a30f8f8cSSatish Balay     info->memory       = irecv[3];
1261a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1262a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1263ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
126426fbe8dcSKarl Rupp 
1265a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1266a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1267a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1268a30f8f8cSSatish Balay     info->memory       = irecv[3];
1269a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1270f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1271a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1272a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1273a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1274a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1275a30f8f8cSSatish Balay }
1276a30f8f8cSSatish Balay 
12774a2ae208SSatish Balay #undef __FUNCT__
12784a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1279ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1280a30f8f8cSSatish Balay {
1281a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1282d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1283dfbe8321SBarry Smith   PetscErrorCode ierr;
1284a30f8f8cSSatish Balay 
1285a30f8f8cSSatish Balay   PetscFunctionBegin;
1286e98b92d7SKris Buschelman   switch (op) {
1287512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1288e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
128928b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1290a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1291e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12924e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12934e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1294e98b92d7SKris Buschelman     break;
1295e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12964e0d8c25SBarry Smith     a->roworiented = flg;
129726fbe8dcSKarl Rupp 
12984e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12994e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1300e98b92d7SKris Buschelman     break;
13014e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1302290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1303e98b92d7SKris Buschelman     break;
1304e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
13054e0d8c25SBarry Smith     a->donotstash = flg;
1306e98b92d7SKris Buschelman     break;
1307e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
13084e0d8c25SBarry Smith     a->ht_flag = flg;
1309e98b92d7SKris Buschelman     break;
13109a4540c5SBarry Smith   case MAT_HERMITIAN:
1311e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1312eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
131326fbe8dcSKarl Rupp 
1314547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1315eeffb40dSHong Zhang     break;
1316ffa07934SHong Zhang   case MAT_SPD:
1317ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1318ffa07934SHong Zhang     A->spd     = flg;
1319ffa07934SHong Zhang     if (flg) {
1320ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1321ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1322ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1323ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1324ffa07934SHong Zhang     }
1325ffa07934SHong Zhang     break;
132677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1327eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1328eeffb40dSHong Zhang     break;
132977e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1330eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1331eeffb40dSHong Zhang     break;
13329a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1333e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1334290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
133577e54ba9SKris Buschelman     break;
1336d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
13374e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1338d0d4cfc2SHong Zhang     break;
1339d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
13404e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1341d0d4cfc2SHong Zhang     break;
1342d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
13434e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1344d0d4cfc2SHong Zhang     break;
1345e98b92d7SKris Buschelman   default:
1346e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1347a30f8f8cSSatish Balay   }
1348a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1349a30f8f8cSSatish Balay }
1350a30f8f8cSSatish Balay 
13514a2ae208SSatish Balay #undef __FUNCT__
13528115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1353fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1354a30f8f8cSSatish Balay {
1355dfbe8321SBarry Smith   PetscErrorCode ierr;
13566e111a19SKarl Rupp 
1357a30f8f8cSSatish Balay   PetscFunctionBegin;
1358815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1359999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1360fc4dec0aSBarry Smith   }
13618115998fSBarry Smith   PetscFunctionReturn(0);
1362a30f8f8cSSatish Balay }
1363a30f8f8cSSatish Balay 
13644a2ae208SSatish Balay #undef __FUNCT__
13654a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1366dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1367a30f8f8cSSatish Balay {
1368a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1369a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1370dfbe8321SBarry Smith   PetscErrorCode ierr;
13715e90f9d9SHong Zhang   PetscInt       nv,m,n;
1372ace3abfcSBarry Smith   PetscBool      flg;
1373a30f8f8cSSatish Balay 
1374a30f8f8cSSatish Balay   PetscFunctionBegin;
1375a30f8f8cSSatish Balay   if (ll != rr) {
1376b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1377e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1378a30f8f8cSSatish Balay   }
1379b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1380b3bf805bSHong Zhang 
13815e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1382e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1383b3bf805bSHong Zhang 
13845e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1385e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13865e90f9d9SHong Zhang 
1387ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13885e90f9d9SHong Zhang 
13895e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
13900298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
13915e90f9d9SHong Zhang 
13925e90f9d9SHong Zhang   /* scale the diagonal part */
1393a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1394a30f8f8cSSatish Balay 
13955e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1396ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13970298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1398a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1399a30f8f8cSSatish Balay }
1400a30f8f8cSSatish Balay 
14014a2ae208SSatish Balay #undef __FUNCT__
14024a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1403dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1404a30f8f8cSSatish Balay {
1405f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1406dfbe8321SBarry Smith   PetscErrorCode ierr;
1407a30f8f8cSSatish Balay 
1408a30f8f8cSSatish Balay   PetscFunctionBegin;
1409a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1410a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1411a30f8f8cSSatish Balay }
1412a30f8f8cSSatish Balay 
14136849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1414a30f8f8cSSatish Balay 
14154a2ae208SSatish Balay #undef __FUNCT__
14164a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1417ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1418a30f8f8cSSatish Balay {
1419a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1420a30f8f8cSSatish Balay   Mat            a,b,c,d;
1421ace3abfcSBarry Smith   PetscBool      flg;
1422dfbe8321SBarry Smith   PetscErrorCode ierr;
1423a30f8f8cSSatish Balay 
1424a30f8f8cSSatish Balay   PetscFunctionBegin;
1425a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1426a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1427a30f8f8cSSatish Balay 
1428a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1429abc0a331SBarry Smith   if (flg) {
1430a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1431a30f8f8cSSatish Balay   }
1432ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1433a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1434a30f8f8cSSatish Balay }
1435a30f8f8cSSatish Balay 
14364a2ae208SSatish Balay #undef __FUNCT__
14373c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
14383c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
14393c896bc6SHong Zhang {
14403c896bc6SHong Zhang   PetscErrorCode ierr;
14413c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14423c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
14433c896bc6SHong Zhang 
14443c896bc6SHong Zhang   PetscFunctionBegin;
14453c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
14463c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1447d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
14483c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1449d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
14503c896bc6SHong Zhang   } else {
14513c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
14523c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
14533c896bc6SHong Zhang   }
14543c896bc6SHong Zhang   PetscFunctionReturn(0);
14553c896bc6SHong Zhang }
14563c896bc6SHong Zhang 
14573c896bc6SHong Zhang #undef __FUNCT__
14584994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
14594994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1460273d9f13SBarry Smith {
1461dfbe8321SBarry Smith   PetscErrorCode ierr;
1462273d9f13SBarry Smith 
1463273d9f13SBarry Smith   PetscFunctionBegin;
1464535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1465273d9f13SBarry Smith   PetscFunctionReturn(0);
1466273d9f13SBarry Smith }
1467a5e6ed63SBarry Smith 
14684fe895cdSHong Zhang #undef __FUNCT__
14694fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14704fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14714fe895cdSHong Zhang {
14724fe895cdSHong Zhang   PetscErrorCode ierr;
14734fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
14744fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14754fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14764fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14774fe895cdSHong Zhang 
14784fe895cdSHong Zhang   PetscFunctionBegin;
14794fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14804fe895cdSHong Zhang     PetscScalar alpha = a;
14814fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
14824fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1483c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
14848b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
14854fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
14864fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1487c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
14888b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1489a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1490ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1491ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1492ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1493ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
14944fe895cdSHong Zhang   } else {
14954de5dceeSHong Zhang     Mat      B;
14964de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
14974de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1498d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14994de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
15004de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
15014de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
15024de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
15034de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
15044de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
15054de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
15064de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
15074de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
15084de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
15094de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
15104de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
15114de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
15124de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
15134de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1514d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
15154de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
15164fe895cdSHong Zhang   }
15174fe895cdSHong Zhang   PetscFunctionReturn(0);
15184fe895cdSHong Zhang }
15194fe895cdSHong Zhang 
1520a5e6ed63SBarry Smith #undef __FUNCT__
1521a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
15221302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1523a5e6ed63SBarry Smith {
15246849ba73SBarry Smith   PetscErrorCode ierr;
15251302d50aSBarry Smith   PetscInt       i;
1526ace3abfcSBarry Smith   PetscBool      flg;
1527a5e6ed63SBarry Smith 
15286849ba73SBarry Smith   PetscFunctionBegin;
15294dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1530a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1531a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
15324dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
15334dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1534a5e6ed63SBarry Smith     }
15354dcd73b1SHong Zhang   }
1536a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1537a5e6ed63SBarry Smith }
1538a5e6ed63SBarry Smith 
1539a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
15403964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1541a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1542a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1543a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
154497304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1545431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1546431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1547a30f8f8cSSatish Balay                                        0,
1548a30f8f8cSSatish Balay                                        0,
1549a30f8f8cSSatish Balay                                        0,
155097304618SKris Buschelman                                /* 10*/ 0,
1551a30f8f8cSSatish Balay                                        0,
1552a30f8f8cSSatish Balay                                        0,
155341f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1554a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
155597304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1556a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1557a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1558a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1559a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
156097304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1561a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1562a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1563a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1564d519adbfSMatthew Knepley                                /* 24*/ 0,
1565a30f8f8cSSatish Balay                                        0,
1566a30f8f8cSSatish Balay                                        0,
1567a30f8f8cSSatish Balay                                        0,
1568a30f8f8cSSatish Balay                                        0,
15694994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1570b5df2d14SHong Zhang                                        0,
1571a30f8f8cSSatish Balay                                        0,
1572a30f8f8cSSatish Balay                                        0,
1573a30f8f8cSSatish Balay                                        0,
1574d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1575a30f8f8cSSatish Balay                                        0,
1576a30f8f8cSSatish Balay                                        0,
1577a30f8f8cSSatish Balay                                        0,
1578a30f8f8cSSatish Balay                                        0,
1579d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1580a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1581d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1582a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
15833c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1584d519adbfSMatthew Knepley                                /* 44*/ 0,
1585a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1586a30f8f8cSSatish Balay                                        0,
1587a30f8f8cSSatish Balay                                        0,
1588a30f8f8cSSatish Balay                                        0,
1589f73d5cc4SBarry Smith                                /* 49*/ 0,
1590a30f8f8cSSatish Balay                                        0,
1591a30f8f8cSSatish Balay                                        0,
1592a30f8f8cSSatish Balay                                        0,
1593a30f8f8cSSatish Balay                                        0,
1594d519adbfSMatthew Knepley                                /* 54*/ 0,
1595a30f8f8cSSatish Balay                                        0,
1596a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1597a30f8f8cSSatish Balay                                        0,
1598a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
15998f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
1600a30f8f8cSSatish Balay                                        0,
1601a30f8f8cSSatish Balay                                        0,
1602357abbc8SBarry Smith                                        0,
160324d5174aSHong Zhang                                        0,
1604d519adbfSMatthew Knepley                                /* 64*/ 0,
160524d5174aSHong Zhang                                        0,
160624d5174aSHong Zhang                                        0,
160724d5174aSHong Zhang                                        0,
160824d5174aSHong Zhang                                        0,
1609d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
161024d5174aSHong Zhang                                        0,
161197304618SKris Buschelman                                        0,
161297304618SKris Buschelman                                        0,
161397304618SKris Buschelman                                        0,
1614d519adbfSMatthew Knepley                                /* 74*/ 0,
161597304618SKris Buschelman                                        0,
161697304618SKris Buschelman                                        0,
161797304618SKris Buschelman                                        0,
161897304618SKris Buschelman                                        0,
1619d519adbfSMatthew Knepley                                /* 79*/ 0,
162097304618SKris Buschelman                                        0,
162197304618SKris Buschelman                                        0,
162297304618SKris Buschelman                                        0,
16235bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1624d519adbfSMatthew Knepley                                /* 84*/ 0,
1625865e5f61SKris Buschelman                                        0,
1626865e5f61SKris Buschelman                                        0,
1627865e5f61SKris Buschelman                                        0,
1628865e5f61SKris Buschelman                                        0,
1629d519adbfSMatthew Knepley                                /* 89*/ 0,
1630865e5f61SKris Buschelman                                        0,
1631865e5f61SKris Buschelman                                        0,
1632865e5f61SKris Buschelman                                        0,
1633865e5f61SKris Buschelman                                        0,
1634d519adbfSMatthew Knepley                                /* 94*/ 0,
1635865e5f61SKris Buschelman                                        0,
1636865e5f61SKris Buschelman                                        0,
163799cafbc1SBarry Smith                                        0,
163899cafbc1SBarry Smith                                        0,
1639d519adbfSMatthew Knepley                                /* 99*/ 0,
164099cafbc1SBarry Smith                                        0,
164199cafbc1SBarry Smith                                        0,
164299cafbc1SBarry Smith                                        0,
164399cafbc1SBarry Smith                                        0,
1644d519adbfSMatthew Knepley                                /*104*/ 0,
164599cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1646d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1647d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
164895936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
164995936485SShri Abhyankar                                /*109*/ 0,
165095936485SShri Abhyankar                                        0,
165195936485SShri Abhyankar                                        0,
165295936485SShri Abhyankar                                        0,
165395936485SShri Abhyankar                                        0,
165495936485SShri Abhyankar                                /*114*/ 0,
165595936485SShri Abhyankar                                        0,
165695936485SShri Abhyankar                                        0,
165795936485SShri Abhyankar                                        0,
165895936485SShri Abhyankar                                        0,
165995936485SShri Abhyankar                                /*119*/ 0,
166095936485SShri Abhyankar                                        0,
166195936485SShri Abhyankar                                        0,
16623964eb88SJed Brown                                        0,
16633964eb88SJed Brown                                        0,
16643964eb88SJed Brown                                /*124*/ 0,
16653964eb88SJed Brown                                        0,
16663964eb88SJed Brown                                        0,
16673964eb88SJed Brown                                        0,
16683964eb88SJed Brown                                        0,
16693964eb88SJed Brown                                /*129*/ 0,
16703964eb88SJed Brown                                        0,
16713964eb88SJed Brown                                        0,
16723964eb88SJed Brown                                        0,
16733964eb88SJed Brown                                        0,
16743964eb88SJed Brown                                /*134*/ 0,
16753964eb88SJed Brown                                        0,
16763964eb88SJed Brown                                        0,
16773964eb88SJed Brown                                        0,
16783964eb88SJed Brown                                        0,
16793964eb88SJed Brown                                /*139*/ 0,
1680f9426fe0SMark Adams                                        0,
168159f5e6ceSHong Zhang                                        0,
168259f5e6ceSHong Zhang                                        0,
168359f5e6ceSHong Zhang                                        0,
168459f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
168599cafbc1SBarry Smith };
1686a30f8f8cSSatish Balay 
16874a2ae208SSatish Balay #undef __FUNCT__
16884a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
168911bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1690a30f8f8cSSatish Balay {
1691a30f8f8cSSatish Balay   PetscFunctionBegin;
1692a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1693a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1694a30f8f8cSSatish Balay }
1695a30f8f8cSSatish Balay 
16964a2ae208SSatish Balay #undef __FUNCT__
1697a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1698b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1699a23d5eceSKris Buschelman {
1700a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1701dfbe8321SBarry Smith   PetscErrorCode ierr;
1702535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1703a23d5eceSKris Buschelman 
1704a23d5eceSKris Buschelman   PetscFunctionBegin;
170533d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
170626283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
170726283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1708e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1709899cda47SBarry Smith 
1710a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1711d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1712d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1713c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1714a23d5eceSKris Buschelman 
1715d0f46423SBarry Smith   B->rmap->bs = bs;
1716a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1717a23d5eceSKris Buschelman   b->mbs      = mbs;
1718a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1719de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1720de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1721a23d5eceSKris Buschelman 
1722a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1723d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1724a23d5eceSKris Buschelman   }
1725d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1726d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1727a23d5eceSKris Buschelman 
1728d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1729d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1730a23d5eceSKris Buschelman 
1731526dfc15SBarry Smith   if (!B->preallocated) {
1732f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1733d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
17349c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
17353bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1736f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1737d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
17384aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
17393bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1740ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1741526dfc15SBarry Smith   }
1742a23d5eceSKris Buschelman 
1743526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1744526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
174526fbe8dcSKarl Rupp 
1746526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1747a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1748a23d5eceSKris Buschelman }
1749a23d5eceSKris Buschelman 
1750dfb205c3SBarry Smith #undef __FUNCT__
1751dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1752dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1753dfb205c3SBarry Smith {
1754dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1755dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1756dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1757dfb205c3SBarry Smith   PetscScalar    *values=0;
1758dfb205c3SBarry Smith   PetscErrorCode ierr;
1759dfb205c3SBarry Smith 
1760dfb205c3SBarry Smith   PetscFunctionBegin;
1761ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1762dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1763dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1764dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1765dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1766e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1767dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1768dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1769dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1770dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1771dfb205c3SBarry Smith 
1772dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1773dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1774dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1775dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1776dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1777dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1778dfb205c3SBarry Smith     JJ     = jj + ii[i];
1779dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1780dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1781dfb205c3SBarry Smith       JJ++;
1782dfb205c3SBarry Smith     }
1783dfb205c3SBarry Smith     d = 0;
1784dfb205c3SBarry Smith     for (; j<nz; j++) {
1785dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1786dfb205c3SBarry Smith       d++;
1787dfb205c3SBarry Smith     }
1788dfb205c3SBarry Smith     d_nnz[i] = d;
1789dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1790dfb205c3SBarry Smith   }
1791dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1792dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1793dfb205c3SBarry Smith 
1794dfb205c3SBarry Smith   values = (PetscScalar*)V;
1795dfb205c3SBarry Smith   if (!values) {
1796785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
1797dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1798dfb205c3SBarry Smith   }
1799dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1800dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1801dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1802dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1803dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1804dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1805dfb205c3SBarry Smith   }
1806dfb205c3SBarry Smith 
1807dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1808dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1809dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18107827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1811dfb205c3SBarry Smith   PetscFunctionReturn(0);
1812dfb205c3SBarry Smith }
1813dfb205c3SBarry Smith 
18140bad9183SKris Buschelman /*MC
1815fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1816828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1817828413b8SBarry Smith    the matrix is stored.
1818828413b8SBarry Smith 
1819828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1820828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
18210bad9183SKris Buschelman 
18220bad9183SKris Buschelman    Options Database Keys:
18230bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
18240bad9183SKris Buschelman 
18250bad9183SKris Buschelman   Level: beginner
18260bad9183SKris Buschelman 
18270bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
18280bad9183SKris Buschelman M*/
18290bad9183SKris Buschelman 
18308cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1831aa5a9175SDahai Guo 
1832a23d5eceSKris Buschelman #undef __FUNCT__
18334a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
18348cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1835b5df2d14SHong Zhang {
1836b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1837dfbe8321SBarry Smith   PetscErrorCode ierr;
183894ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
1839b5df2d14SHong Zhang 
1840b5df2d14SHong Zhang   PetscFunctionBegin;
1841b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
1842b0a32e0cSBarry Smith   B->data = (void*)b;
1843b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1844b5df2d14SHong Zhang 
1845b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
1846b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
1847b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
1848b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
184926fbe8dcSKarl Rupp 
1850ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
1851ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
1852b5df2d14SHong Zhang 
1853b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1854854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
1855b5df2d14SHong Zhang 
1856b5df2d14SHong Zhang   /* build cache for off array entries formed */
1857ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
185826fbe8dcSKarl Rupp 
1859b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
18600298fd71SBarry Smith   b->colmap      = NULL;
18610298fd71SBarry Smith   b->garray      = NULL;
1862b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang   /* stuff used in block assembly */
1865b5df2d14SHong Zhang   b->barray = 0;
1866b5df2d14SHong Zhang 
1867b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1868b5df2d14SHong Zhang   b->lvec    = 0;
1869b5df2d14SHong Zhang   b->Mvctx   = 0;
187040781036SHong Zhang   b->slvec0  = 0;
187140781036SHong Zhang   b->slvec0b = 0;
187240781036SHong Zhang   b->slvec1  = 0;
187340781036SHong Zhang   b->slvec1a = 0;
187440781036SHong Zhang   b->slvec1b = 0;
187540781036SHong Zhang   b->sMvctx  = 0;
1876b5df2d14SHong Zhang 
1877b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1878b5df2d14SHong Zhang   b->rowindices   = 0;
1879b5df2d14SHong Zhang   b->rowvalues    = 0;
1880b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1881b5df2d14SHong Zhang 
1882b5df2d14SHong Zhang   /* hash table stuff */
1883b5df2d14SHong Zhang   b->ht           = 0;
1884b5df2d14SHong Zhang   b->hd           = 0;
1885b5df2d14SHong Zhang   b->ht_size      = 0;
1886b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1887b5df2d14SHong Zhang   b->ht_fact      = 0;
1888b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1889b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1890b5df2d14SHong Zhang 
18917a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
18927a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
18937a868f3eSHong Zhang 
189459ffdab8SBarry Smith   b->in_loc = 0;
189559ffdab8SBarry Smith   b->v_loc  = 0;
189659ffdab8SBarry Smith   b->n_loc  = 0;
189794ae4db5SBarry Smith 
1898bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1899bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1900bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1901bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1902bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1903bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
19046214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
19056214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
19066214f412SHong Zhang #endif
1907aa5a9175SDahai Guo 
190823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
190923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
191023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
191123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
191226fbe8dcSKarl Rupp 
191317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
191494ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
191594ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
191694ae4db5SBarry Smith   if (flg) {
191794ae4db5SBarry Smith     PetscReal fact = 1.39;
191894ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
191994ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
192094ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
192194ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
192294ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
192394ae4db5SBarry Smith   }
192494ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1925b5df2d14SHong Zhang   PetscFunctionReturn(0);
1926b5df2d14SHong Zhang }
1927b5df2d14SHong Zhang 
1928209238afSKris Buschelman /*MC
1929002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1930209238afSKris Buschelman 
1931209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1932209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1933209238afSKris Buschelman 
1934209238afSKris Buschelman    Options Database Keys:
1935209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1936209238afSKris Buschelman 
1937209238afSKris Buschelman   Level: beginner
1938209238afSKris Buschelman 
1939209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1940209238afSKris Buschelman M*/
1941209238afSKris Buschelman 
19424a2ae208SSatish Balay #undef __FUNCT__
19434a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1944b5df2d14SHong Zhang /*@C
1945b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1946b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1947b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1948b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1949b5df2d14SHong Zhang 
1950b5df2d14SHong Zhang    Collective on Mat
1951b5df2d14SHong Zhang 
1952b5df2d14SHong Zhang    Input Parameters:
19531c4f3114SJed Brown +  B - the matrix
1954bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1955bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1956b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1957b5df2d14SHong Zhang            submatrix  (same for all local rows)
1958b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
19596d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
19600298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
196195742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1962b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1963b5df2d14SHong Zhang            submatrix (same for all local rows).
1964b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1965c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
19660298fd71SBarry Smith            (possibly different for each block row) or NULL.
1967b5df2d14SHong Zhang 
1968b5df2d14SHong Zhang 
1969b5df2d14SHong Zhang    Options Database Keys:
1970b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1971b5df2d14SHong Zhang                      block calculations (much slower)
1972b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1973b5df2d14SHong Zhang 
1974b5df2d14SHong Zhang    Notes:
1975b5df2d14SHong Zhang 
1976b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1977b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1978b5df2d14SHong Zhang 
197949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
198049a6f317SBarry Smith 
1981b5df2d14SHong Zhang    Storage Information:
1982b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1983b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1984b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1985b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1986b5df2d14SHong Zhang 
1987b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1988b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
19890298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
1990b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1991b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1992b5df2d14SHong Zhang 
1993aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1994aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1995aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1996aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1997aa95bbe8SBarry Smith 
1998b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1999b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2000b5df2d14SHong Zhang 
2001b5df2d14SHong Zhang .vb
2002b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2003a4b1a0f6SJed Brown           --------------------------
2004c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2005c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2006c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2007a4b1a0f6SJed Brown           --------------------------
2008b5df2d14SHong Zhang .ve
2009b5df2d14SHong Zhang 
2010b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2011b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
20126d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20136d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2014b5df2d14SHong Zhang 
20156d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20166d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2017c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2018c2fc9fa9SBarry Smith 
2019b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2020b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2021b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2022b5df2d14SHong Zhang    matrices.
2023b5df2d14SHong Zhang 
2024b5df2d14SHong Zhang    Level: intermediate
2025b5df2d14SHong Zhang 
2026b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2027b5df2d14SHong Zhang 
2028ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2029b5df2d14SHong Zhang @*/
20307087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2031b5df2d14SHong Zhang {
20324ac538c5SBarry Smith   PetscErrorCode ierr;
2033b5df2d14SHong Zhang 
2034b5df2d14SHong Zhang   PetscFunctionBegin;
20356ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
20366ba663aaSJed Brown   PetscValidType(B,1);
20376ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
20384ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2039b5df2d14SHong Zhang   PetscFunctionReturn(0);
2040b5df2d14SHong Zhang }
2041b5df2d14SHong Zhang 
20424a2ae208SSatish Balay #undef __FUNCT__
204369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2044a30f8f8cSSatish Balay /*@C
204569b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2046a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2047a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2048a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2049a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2050a30f8f8cSSatish Balay 
2051a30f8f8cSSatish Balay    Collective on MPI_Comm
2052a30f8f8cSSatish Balay 
2053a30f8f8cSSatish Balay    Input Parameters:
2054a30f8f8cSSatish Balay +  comm - MPI communicator
2055bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2056bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2057a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2058a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2059a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2060a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2061a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2062a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2063a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2064a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2065a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2066a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2067a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
20686d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
20690298fd71SBarry Smith            (possibly different for each block block row) or NULL.
207095742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
207195742e49SBarry Smith            set its value even if it is zero.
2072a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2073a30f8f8cSSatish Balay            submatrix (same for all local rows).
2074a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2075a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
20760298fd71SBarry Smith            each block row) or NULL.
2077a30f8f8cSSatish Balay 
2078a30f8f8cSSatish Balay    Output Parameter:
2079a30f8f8cSSatish Balay .  A - the matrix
2080a30f8f8cSSatish Balay 
2081a30f8f8cSSatish Balay    Options Database Keys:
2082a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2083a30f8f8cSSatish Balay                      block calculations (much slower)
2084a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2085a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2086a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2087a30f8f8cSSatish Balay 
2088175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2089ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2090175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2091175b88e8SBarry Smith 
2092a30f8f8cSSatish Balay    Notes:
2093d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20946d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2095d1be2dadSMatthew Knepley 
2096a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2097a30f8f8cSSatish Balay    (possibly both).
2098a30f8f8cSSatish Balay 
2099a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2100a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2101a30f8f8cSSatish Balay 
210249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
210349a6f317SBarry Smith 
2104a30f8f8cSSatish Balay    Storage Information:
2105a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2106a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2107a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2108a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2109a30f8f8cSSatish Balay 
2110a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2111a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
21120298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2113a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2114a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2115a30f8f8cSSatish Balay 
2116a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2117a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2118a30f8f8cSSatish Balay 
2119a30f8f8cSSatish Balay .vb
2120a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2121a4b1a0f6SJed Brown           --------------------------
2122c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2123c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2124c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2125a4b1a0f6SJed Brown           --------------------------
2126a30f8f8cSSatish Balay .ve
2127a30f8f8cSSatish Balay 
2128a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2129a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
21306d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
21316d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2132a30f8f8cSSatish Balay 
21336d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
21346d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2135a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2136a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2137a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2138a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2139a30f8f8cSSatish Balay    matrices.
2140a30f8f8cSSatish Balay 
2141a30f8f8cSSatish Balay    Level: intermediate
2142a30f8f8cSSatish Balay 
2143a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2144a30f8f8cSSatish Balay 
214569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2146a30f8f8cSSatish Balay @*/
2147a30f8f8cSSatish Balay 
214869b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2149a30f8f8cSSatish Balay {
21506849ba73SBarry Smith   PetscErrorCode ierr;
21511302d50aSBarry Smith   PetscMPIInt    size;
2152a30f8f8cSSatish Balay 
2153a30f8f8cSSatish Balay   PetscFunctionBegin;
2154f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2155f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2156273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2157273d9f13SBarry Smith   if (size > 1) {
2158b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2159b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2160273d9f13SBarry Smith   } else {
2161273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2162273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2163273d9f13SBarry Smith   }
2164a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2165a30f8f8cSSatish Balay }
2166a30f8f8cSSatish Balay 
2167a30f8f8cSSatish Balay 
21684a2ae208SSatish Balay #undef __FUNCT__
21694a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
21706849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2171a30f8f8cSSatish Balay {
2172a30f8f8cSSatish Balay   Mat            mat;
2173a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2174dfbe8321SBarry Smith   PetscErrorCode ierr;
2175d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2176387bc808SHong Zhang   PetscScalar    *array;
2177a30f8f8cSSatish Balay 
2178a30f8f8cSSatish Balay   PetscFunctionBegin;
2179a30f8f8cSSatish Balay   *newmat = 0;
218026fbe8dcSKarl Rupp 
2181ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2182d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
21837adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
21841d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
21851e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
21861e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2187e1b6402fSHong Zhang 
2188d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2189273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
219082327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21917fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21927fff6886SHong Zhang 
2193b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2194a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2195a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2196a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2197a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2198a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2199a30f8f8cSSatish Balay 
2200899cda47SBarry Smith 
2201a30f8f8cSSatish Balay   a->size         = oldmat->size;
2202a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2203a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2204a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2205a30f8f8cSSatish Balay   a->rowindices   = 0;
2206a30f8f8cSSatish Balay   a->rowvalues    = 0;
2207a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2208a30f8f8cSSatish Balay   a->barray       = 0;
2209899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2210899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2211899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2212899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2213a30f8f8cSSatish Balay 
2214a30f8f8cSSatish Balay   /* hash table stuff */
2215a30f8f8cSSatish Balay   a->ht           = 0;
2216a30f8f8cSSatish Balay   a->hd           = 0;
2217a30f8f8cSSatish Balay   a->ht_size      = 0;
2218a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2219a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2220a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2221a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2222a30f8f8cSSatish Balay 
2223899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2224a30f8f8cSSatish Balay   if (oldmat->colmap) {
2225a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2226a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2227a30f8f8cSSatish Balay #else
2228854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
22293bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
22301302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2231a30f8f8cSSatish Balay #endif
2232a30f8f8cSSatish Balay   } else a->colmap = 0;
2233387bc808SHong Zhang 
2234a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2235785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
22363bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
22371302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2238a30f8f8cSSatish Balay   } else a->garray = 0;
2239a30f8f8cSSatish Balay 
2240ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2241a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
22423bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2243a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
22443bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
224582327fa8SHong Zhang 
224682327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
22473bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
224882327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
22493bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2250387bc808SHong Zhang 
2251387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
22521ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2253778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2254778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
22551ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
22561ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2257778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
22581ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
22593bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
22603bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
22613bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
22623bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
22633bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2264387bc808SHong Zhang 
2265387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2266387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2267387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
22683bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
226982327fa8SHong Zhang 
2270a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
22713bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2272a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
22733bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2274140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2275a30f8f8cSSatish Balay   *newmat = mat;
2276a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2277a30f8f8cSSatish Balay }
2278a30f8f8cSSatish Balay 
22794a2ae208SSatish Balay #undef __FUNCT__
22805bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2281112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
228295936485SShri Abhyankar {
228395936485SShri Abhyankar   PetscErrorCode ierr;
228495936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
228595936485SShri Abhyankar   PetscScalar    *vals,*buf;
2286ce94432eSBarry Smith   MPI_Comm       comm;
228795936485SShri Abhyankar   MPI_Status     status;
2288adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2289adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
229095936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
22913059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
229295936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
229395936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
229495936485SShri Abhyankar   int            fd;
229595936485SShri Abhyankar 
229695936485SShri Abhyankar   PetscFunctionBegin;
2297ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
22980298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
22990298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
230095936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
23013059b6faSBarry Smith   if (bs < 0) bs = 1;
230295936485SShri Abhyankar 
230395936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
230495936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
230595936485SShri Abhyankar   if (!rank) {
230695936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
230795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
230895936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
230995936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
231095936485SShri Abhyankar   }
231195936485SShri Abhyankar 
231295936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
231395936485SShri Abhyankar 
231495936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
231526fbe8dcSKarl Rupp   M    = header[1];
231626fbe8dcSKarl Rupp   N    = header[2];
231795936485SShri Abhyankar 
231895936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
231995936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
232095936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
232195936485SShri Abhyankar 
232295936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
232395936485SShri Abhyankar   if (sizesset) {
232495936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
232595936485SShri Abhyankar   }
2326abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2327abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
232895936485SShri Abhyankar 
232995936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
233095936485SShri Abhyankar 
233195936485SShri Abhyankar   /*
233295936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
233395936485SShri Abhyankar      divisible by the blocksize
233495936485SShri Abhyankar   */
233595936485SShri Abhyankar   Mbs        = M/bs;
233695936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
233795936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
233895936485SShri Abhyankar   else                  Mbs++;
233995936485SShri Abhyankar   if (extra_rows &&!rank) {
234095936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
234195936485SShri Abhyankar   }
234295936485SShri Abhyankar 
234395936485SShri Abhyankar   /* determine ownership of all rows */
234495936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
234595936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
234695936485SShri Abhyankar     m   = mbs*bs;
234795936485SShri Abhyankar   } else { /* User Set */
234895936485SShri Abhyankar     m   = newmat->rmap->n;
234995936485SShri Abhyankar     mbs = m/bs;
235095936485SShri Abhyankar   }
2351dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
23524dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
235395936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
235495936485SShri Abhyankar   rowners[0] = 0;
235595936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
235695936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
235795936485SShri Abhyankar   rstart = rowners[rank];
235895936485SShri Abhyankar   rend   = rowners[rank+1];
235995936485SShri Abhyankar 
236095936485SShri Abhyankar   /* distribute row lengths to all processors */
2361785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
236295936485SShri Abhyankar   if (!rank) {
2363854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
236495936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
236595936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2366785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
236795936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
236895936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
236995936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
237095936485SShri Abhyankar   } else {
237195936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
237295936485SShri Abhyankar   }
237395936485SShri Abhyankar 
237495936485SShri Abhyankar   if (!rank) {   /* procs[0] */
237595936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2376785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
237795936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
237895936485SShri Abhyankar     for (i=0; i<size; i++) {
237995936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
238095936485SShri Abhyankar         procsnz[i] += rowlengths[j];
238195936485SShri Abhyankar       }
238295936485SShri Abhyankar     }
238395936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
238495936485SShri Abhyankar 
238595936485SShri Abhyankar     /* determine max buffer needed and allocate it */
238695936485SShri Abhyankar     maxnz = 0;
238795936485SShri Abhyankar     for (i=0; i<size; i++) {
238895936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
238995936485SShri Abhyankar     }
2390785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
239195936485SShri Abhyankar 
239295936485SShri Abhyankar     /* read in my part of the matrix column indices  */
239395936485SShri Abhyankar     nz     = procsnz[0];
2394785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
239595936485SShri Abhyankar     mycols = ibuf;
239695936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
239795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
239826fbe8dcSKarl Rupp     if (size == 1) {
239926fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
240026fbe8dcSKarl Rupp     }
240195936485SShri Abhyankar 
240295936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
240395936485SShri Abhyankar     for (i=1; i<size-1; i++) {
240495936485SShri Abhyankar       nz   = procsnz[i];
240595936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
240695936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
240795936485SShri Abhyankar     }
240895936485SShri Abhyankar     /* read in the stuff for the last proc */
240995936485SShri Abhyankar     if (size != 1) {
241095936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
241195936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
241295936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
241395936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
241495936485SShri Abhyankar     }
241595936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
241695936485SShri Abhyankar   } else {  /* procs[i], i>0 */
241795936485SShri Abhyankar     /* determine buffer space needed for message */
241895936485SShri Abhyankar     nz = 0;
241926fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2420785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
242195936485SShri Abhyankar     mycols = ibuf;
242295936485SShri Abhyankar     /* receive message of column indices*/
242395936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
242495936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
242595936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
242695936485SShri Abhyankar   }
242795936485SShri Abhyankar 
242895936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2429dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2430dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
243195936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
243295936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
243395936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
243495936485SShri Abhyankar   rowcount = 0;
243595936485SShri Abhyankar   nzcount  = 0;
243695936485SShri Abhyankar   for (i=0; i<mbs; i++) {
243795936485SShri Abhyankar     dcount  = 0;
243895936485SShri Abhyankar     odcount = 0;
243995936485SShri Abhyankar     for (j=0; j<bs; j++) {
244095936485SShri Abhyankar       kmax = locrowlens[rowcount];
244195936485SShri Abhyankar       for (k=0; k<kmax; k++) {
244295936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
244395936485SShri Abhyankar         if (!mask[tmp]) {
244495936485SShri Abhyankar           mask[tmp] = 1;
244595936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
244695936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
244795936485SShri Abhyankar         }
244895936485SShri Abhyankar       }
244995936485SShri Abhyankar       rowcount++;
245095936485SShri Abhyankar     }
245195936485SShri Abhyankar 
245295936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
245395936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
245495936485SShri Abhyankar 
245595936485SShri Abhyankar     /* zero out the mask elements we set */
245695936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
245795936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
245895936485SShri Abhyankar   }
245995936485SShri Abhyankar   if (!sizesset) {
246095936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
246195936485SShri Abhyankar   }
246295936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
24636816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
246495936485SShri Abhyankar 
246595936485SShri Abhyankar   if (!rank) {
2466785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
246795936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
246895936485SShri Abhyankar     nz     = procsnz[0];
246995936485SShri Abhyankar     vals   = buf;
247095936485SShri Abhyankar     mycols = ibuf;
247195936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
247295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
247326fbe8dcSKarl Rupp     if (size == 1) {
247426fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
247526fbe8dcSKarl Rupp     }
247695936485SShri Abhyankar 
247795936485SShri Abhyankar     /* insert into matrix */
247895936485SShri Abhyankar     jj = rstart*bs;
247995936485SShri Abhyankar     for (i=0; i<m; i++) {
248095936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
248195936485SShri Abhyankar       mycols += locrowlens[i];
248295936485SShri Abhyankar       vals   += locrowlens[i];
248395936485SShri Abhyankar       jj++;
248495936485SShri Abhyankar     }
248595936485SShri Abhyankar 
248695936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
248795936485SShri Abhyankar     for (i=1; i<size-1; i++) {
248895936485SShri Abhyankar       nz   = procsnz[i];
248995936485SShri Abhyankar       vals = buf;
249095936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
249195936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
249295936485SShri Abhyankar     }
249395936485SShri Abhyankar     /* the last proc */
249495936485SShri Abhyankar     if (size != 1) {
249595936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
249695936485SShri Abhyankar       vals = buf;
249795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
249895936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
249995936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
250095936485SShri Abhyankar     }
250195936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
250295936485SShri Abhyankar 
250395936485SShri Abhyankar   } else {
250495936485SShri Abhyankar     /* receive numeric values */
2505785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
250695936485SShri Abhyankar 
250795936485SShri Abhyankar     /* receive message of values*/
250895936485SShri Abhyankar     vals   = buf;
250995936485SShri Abhyankar     mycols = ibuf;
251095936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
251195936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
251295936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
251395936485SShri Abhyankar 
251495936485SShri Abhyankar     /* insert into matrix */
251595936485SShri Abhyankar     jj = rstart*bs;
251695936485SShri Abhyankar     for (i=0; i<m; i++) {
251795936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
251895936485SShri Abhyankar       mycols += locrowlens[i];
251995936485SShri Abhyankar       vals   += locrowlens[i];
252095936485SShri Abhyankar       jj++;
252195936485SShri Abhyankar     }
252295936485SShri Abhyankar   }
252395936485SShri Abhyankar 
252495936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
252595936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
252695936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
252795936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
252895936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
252995936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
253095936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
253195936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
253295936485SShri Abhyankar   PetscFunctionReturn(0);
253395936485SShri Abhyankar }
253495936485SShri Abhyankar 
253595936485SShri Abhyankar #undef __FUNCT__
25364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2537dcf5cc72SBarry Smith /*XXXXX@
2538a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2539a30f8f8cSSatish Balay 
2540a30f8f8cSSatish Balay    Input Parameters:
2541a30f8f8cSSatish Balay .  mat  - the matrix
2542a30f8f8cSSatish Balay .  fact - factor
2543a30f8f8cSSatish Balay 
2544c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2545a30f8f8cSSatish Balay 
2546a30f8f8cSSatish Balay    Level: advanced
2547a30f8f8cSSatish Balay 
2548a30f8f8cSSatish Balay   Notes:
2549a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2550a30f8f8cSSatish Balay 
2551a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2552a30f8f8cSSatish Balay 
2553a30f8f8cSSatish Balay .seealso: MatSetOption()
2554dcf5cc72SBarry Smith @XXXXX*/
2555dcf5cc72SBarry Smith 
255624d5174aSHong Zhang 
25574a2ae208SSatish Balay #undef __FUNCT__
2558985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2559985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
256024d5174aSHong Zhang {
256124d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2562f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2563ca54ac64SHong Zhang   PetscReal      atmp;
256487828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2565dfbe8321SBarry Smith   PetscErrorCode ierr;
25661302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25671302d50aSBarry Smith   PetscMPIInt    rank,size;
25681302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
256987828ca2SBarry Smith   PetscScalar    *va;
25708a1c53f2SBarry Smith   MatScalar      *ba;
2571f4c0e9e4SHong Zhang   MPI_Status     stat;
257224d5174aSHong Zhang 
257324d5174aSHong Zhang   PetscFunctionBegin;
2574e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
25750298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
25761ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2577f4c0e9e4SHong Zhang 
2578ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2579ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2580f4c0e9e4SHong Zhang 
2581d0f46423SBarry Smith   bs  = A->rmap->bs;
2582f4c0e9e4SHong Zhang   mbs = a->mbs;
2583f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2584f4c0e9e4SHong Zhang   ba  = b->a;
2585f4c0e9e4SHong Zhang   bi  = b->i;
2586f4c0e9e4SHong Zhang   bj  = b->j;
2587f4c0e9e4SHong Zhang 
2588f4c0e9e4SHong Zhang   /* find ownerships */
2589d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2590f4c0e9e4SHong Zhang 
2591f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2592785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2593ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2594f4c0e9e4SHong Zhang 
2595f4c0e9e4SHong Zhang   /* row_max for B */
2596b8475685SHong Zhang   if (rank != size-1) {
2597f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2598f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2599f4c0e9e4SHong Zhang       brow  = bs*i;
2600f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2601f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2602f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2603ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
260404d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2605f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2606f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2607ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2608ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2609f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2610f4c0e9e4SHong Zhang           }
2611f4c0e9e4SHong Zhang         }
2612f4c0e9e4SHong Zhang         bj++;
2613f4c0e9e4SHong Zhang       }
2614f4c0e9e4SHong Zhang     }
2615f4c0e9e4SHong Zhang 
2616f4c0e9e4SHong Zhang     /* send values to its owners */
2617f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2618f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2619ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2620ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2621ca54ac64SHong Zhang     }
2622f4c0e9e4SHong Zhang   }
2623f4c0e9e4SHong Zhang 
2624f4c0e9e4SHong Zhang   /* receive values */
2625ca54ac64SHong Zhang   if (rank) {
2626f4c0e9e4SHong Zhang     rvalues = work;
2627ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2628f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2629ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2630f4c0e9e4SHong Zhang       /* process values */
2631f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2632ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2633f4c0e9e4SHong Zhang       }
2634f4c0e9e4SHong Zhang     }
2635ca54ac64SHong Zhang   }
2636f4c0e9e4SHong Zhang 
26371ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2638ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
263924d5174aSHong Zhang   PetscFunctionReturn(0);
264024d5174aSHong Zhang }
26412798e883SHong Zhang 
26422798e883SHong Zhang #undef __FUNCT__
264341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
264441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
26452798e883SHong Zhang {
26462798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2647dfbe8321SBarry Smith   PetscErrorCode    ierr;
2648d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
26493649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2650ffe4fb16SHong Zhang   Vec               bb1;
26513649974fSBarry Smith   const PetscScalar *b;
2652ffe4fb16SHong Zhang 
2653ffe4fb16SHong Zhang   PetscFunctionBegin;
2654e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2655e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2656ffe4fb16SHong Zhang 
2657a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
265841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2659a2b30743SBarry Smith     PetscFunctionReturn(0);
2660a2b30743SBarry Smith   }
2661a2b30743SBarry Smith 
2662ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2663ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
266441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2665ffe4fb16SHong Zhang       its--;
2666ffe4fb16SHong Zhang     }
2667ffe4fb16SHong Zhang 
2668ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2669ffe4fb16SHong Zhang     while (its--) {
2670ffe4fb16SHong Zhang 
2671ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2672ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2673ffe4fb16SHong Zhang 
2674ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26751ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
26761ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2677ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26781ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2679ffe4fb16SHong Zhang 
2680efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2681ffe4fb16SHong Zhang 
2682ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26831ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
26843649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2685ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26861ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2687ffe4fb16SHong Zhang 
2688ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2689fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2690ffe4fb16SHong Zhang 
2691ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26921ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2693a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2694ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2695ffe4fb16SHong Zhang 
2696ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2697ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2698ffe4fb16SHong Zhang 
2699ffe4fb16SHong Zhang       /* local diagonal sweep */
270041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2701ffe4fb16SHong Zhang     }
27026bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2703fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
270441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2705fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
270641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2707fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2708fa22f6d0SBarry Smith     Vec               xx1;
2709ace3abfcSBarry Smith     PetscBool         hasop;
271020f1ed55SBarry Smith     const PetscScalar *diag;
2711887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
271220f1ed55SBarry Smith     PetscInt          i,n;
2713fa22f6d0SBarry Smith 
2714fa22f6d0SBarry Smith     if (!mat->xx1) {
2715fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2716fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2717fa22f6d0SBarry Smith     }
2718fa22f6d0SBarry Smith     xx1 = mat->xx1;
2719fa22f6d0SBarry Smith     bb1 = mat->bb1;
2720fa22f6d0SBarry Smith 
272141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2722fa22f6d0SBarry Smith 
2723fa22f6d0SBarry Smith     if (!mat->diag) {
2724effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27252a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2726fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2727fa22f6d0SBarry Smith     }
2728fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2729fa22f6d0SBarry Smith 
2730fa22f6d0SBarry Smith     if (hasop) {
2731fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2732887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
273320f1ed55SBarry Smith     } else {
273420f1ed55SBarry Smith       /*
273520f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
273620f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2737887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
273820f1ed55SBarry Smith       */
273920f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27403649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27413649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
274220f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
274320f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2744887ee2caSBarry Smith       if (omega == 1.0) {
274526fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
274620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2747887ee2caSBarry Smith       } else {
274826fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2749887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2750887ee2caSBarry Smith       }
275120f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27523649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27533649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
275420f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
275520f1ed55SBarry Smith     }
2756fa22f6d0SBarry Smith 
2757fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2758fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2759fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2760fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2761fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2762fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2763fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2764fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2765fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2766fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2767effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2768fa22f6d0SBarry Smith 
2769fa22f6d0SBarry Smith     /* local sweep */
277041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2771fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2772f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2773ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2774ffe4fb16SHong Zhang }
2775ffe4fb16SHong Zhang 
2776ffe4fb16SHong Zhang #undef __FUNCT__
277741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
277841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2779ffe4fb16SHong Zhang {
2780ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2781dfbe8321SBarry Smith   PetscErrorCode ierr;
27822798e883SHong Zhang   Vec            lvec1,bb1;
27832798e883SHong Zhang 
27842798e883SHong Zhang   PetscFunctionBegin;
2785e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2786e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27872798e883SHong Zhang 
2788c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
27892798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
279041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27912798e883SHong Zhang       its--;
27922798e883SHong Zhang     }
27932798e883SHong Zhang 
27942798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27952798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27962798e883SHong Zhang     while (its--) {
2797ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27982798e883SHong Zhang 
27992798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
28002798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2801efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
28022798e883SHong Zhang 
2803ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
28042798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2805ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
28062798e883SHong Zhang 
28072798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2808efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
28092798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
28102798e883SHong Zhang 
2811ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
28122798e883SHong Zhang 
2813c14dc6b6SHong Zhang       /* diagonal sweep */
281441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
28152798e883SHong Zhang     }
28166bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
28176bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
28186bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
28192798e883SHong Zhang   PetscFunctionReturn(0);
28202798e883SHong Zhang }
28212798e883SHong Zhang 
2822dfb205c3SBarry Smith #undef __FUNCT__
2823dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2824dfb205c3SBarry Smith /*@
2825dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2826dfb205c3SBarry Smith          CSR format the local rows.
2827dfb205c3SBarry Smith 
2828dfb205c3SBarry Smith    Collective on MPI_Comm
2829dfb205c3SBarry Smith 
2830dfb205c3SBarry Smith    Input Parameters:
2831dfb205c3SBarry Smith +  comm - MPI communicator
2832dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2833dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2834dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2835dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2836dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2837dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2838dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2839dfb205c3SBarry Smith .   i - row indices
2840dfb205c3SBarry Smith .   j - column indices
2841dfb205c3SBarry Smith -   a - matrix values
2842dfb205c3SBarry Smith 
2843dfb205c3SBarry Smith    Output Parameter:
2844dfb205c3SBarry Smith .   mat - the matrix
2845dfb205c3SBarry Smith 
2846dfb205c3SBarry Smith    Level: intermediate
2847dfb205c3SBarry Smith 
2848dfb205c3SBarry Smith    Notes:
2849dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2850dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2851dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2852dfb205c3SBarry Smith 
2853dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2854dfb205c3SBarry Smith 
2855dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2856dfb205c3SBarry Smith 
2857dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
285869b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2859dfb205c3SBarry Smith @*/
28607087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2861dfb205c3SBarry Smith {
2862dfb205c3SBarry Smith   PetscErrorCode ierr;
2863dfb205c3SBarry Smith 
2864dfb205c3SBarry Smith 
2865dfb205c3SBarry Smith   PetscFunctionBegin;
2866f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2867dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2868dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2869dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2870dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2871dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2872dfb205c3SBarry Smith   PetscFunctionReturn(0);
2873dfb205c3SBarry Smith }
2874dfb205c3SBarry Smith 
2875dfb205c3SBarry Smith 
2876dfb205c3SBarry Smith #undef __FUNCT__
2877dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2878dfb205c3SBarry Smith /*@C
2879dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2880dfb205c3SBarry Smith    (the default parallel PETSc format).
2881dfb205c3SBarry Smith 
2882dfb205c3SBarry Smith    Collective on MPI_Comm
2883dfb205c3SBarry Smith 
2884dfb205c3SBarry Smith    Input Parameters:
28851c4f3114SJed Brown +  B - the matrix
2886dfb205c3SBarry Smith .  bs - the block size
2887dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2888dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2889dfb205c3SBarry Smith -  v - optional values in the matrix
2890dfb205c3SBarry Smith 
2891dfb205c3SBarry Smith    Level: developer
2892dfb205c3SBarry Smith 
2893dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2894dfb205c3SBarry Smith 
289569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2896dfb205c3SBarry Smith @*/
28977087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2898dfb205c3SBarry Smith {
28994ac538c5SBarry Smith   PetscErrorCode ierr;
2900dfb205c3SBarry Smith 
2901dfb205c3SBarry Smith   PetscFunctionBegin;
29024ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2903dfb205c3SBarry Smith   PetscFunctionReturn(0);
2904dfb205c3SBarry Smith }
2905dfb205c3SBarry Smith 
2906de4b53ebSHong Zhang #undef __FUNCT__
290710c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
290810c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
29094dcd73b1SHong Zhang {
29104dcd73b1SHong Zhang   PetscErrorCode ierr;
291110c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
291210c56fdeSHong Zhang   PetscInt       *indx;
291310c56fdeSHong Zhang   PetscScalar    *values;
2914dfb205c3SBarry Smith 
29154dcd73b1SHong Zhang   PetscFunctionBegin;
29164dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
291710c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
291810c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
291910c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
292010c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
29214dcd73b1SHong Zhang 
292210c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
292310c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
292410c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
292510c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
292610c56fdeSHong Zhang     }
292710c56fdeSHong Zhang     /* Check sum(n) = Nbs */
292810c56fdeSHong Zhang     ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
292910c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
293010c56fdeSHong Zhang 
293110c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
293210c56fdeSHong Zhang     rstart -= mbs;
29334dcd73b1SHong Zhang 
29344dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
293510c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
2936e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
293710c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
29384dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
29394dcd73b1SHong Zhang       nnz = nnz/bs;
29404dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
29414dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
29424dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
29434dcd73b1SHong Zhang     }
2944e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
29454dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
29464dcd73b1SHong Zhang 
29474dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
294810c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
29494dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
29504dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
29514dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
29524dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
29534dcd73b1SHong Zhang   }
29544dcd73b1SHong Zhang 
295510c56fdeSHong Zhang   /* numeric phase */
29564dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
295710c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
29584dcd73b1SHong Zhang 
2959e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
29604dcd73b1SHong Zhang   for (i=0; i<m; i++) {
29614dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29624dcd73b1SHong Zhang     Ii   = i + rstart;
296310c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
29644dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29654dcd73b1SHong Zhang   }
2966e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
296710c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
296810c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29694dcd73b1SHong Zhang   PetscFunctionReturn(0);
29704dcd73b1SHong Zhang }
2971