1a30f8f8cSSatish Balay 2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 3a30f8f8cSSatish Balay #include "mpisbaij.h" 4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 5a30f8f8cSSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 9*1302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 10*1302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 11*1302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 12*1302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 13*1302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 14*1302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 15*1302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 16*1302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 21*1302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 31*1302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 32*1302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 33*1302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 34*1302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 35*1302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101a45adfd6SMatthew Knepley else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 102a30f8f8cSSatish Balay if (nrow >= rmax) { \ 103a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 104*1302d50aSBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 105a30f8f8cSSatish Balay MatScalar *new_a; \ 106a30f8f8cSSatish Balay \ 107a45adfd6SMatthew Knepley if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 108a30f8f8cSSatish Balay \ 109a30f8f8cSSatish Balay /* malloc new storage space */ \ 110*1302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 11182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 112*1302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 113a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 114a30f8f8cSSatish Balay \ 115a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 116a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 117a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 118*1302d50aSBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 120*1302d50aSBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12287828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 124a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay /* free up old matrix storage */ \ 126a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 128a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 130a30f8f8cSSatish Balay } \ 131a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 132a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 133a30f8f8cSSatish Balay \ 134a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 135a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 136*1302d50aSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 1376c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 138a30f8f8cSSatish Balay a->reallocs++; \ 1396c6c5352SBarry Smith a->nz++; \ 140a30f8f8cSSatish Balay } \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay a_noinsert:; \ 151a30f8f8cSSatish Balay ailen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 154a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 155a30f8f8cSSatish Balay { \ 156a30f8f8cSSatish Balay brow = row/bs; \ 157a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 158a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 159a30f8f8cSSatish Balay bcol = col/bs; \ 160a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 161a30f8f8cSSatish Balay low = 0; high = nrow; \ 162a30f8f8cSSatish Balay while (high-low > 3) { \ 163a30f8f8cSSatish Balay t = (low+high)/2; \ 164a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 165a30f8f8cSSatish Balay else low = t; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 168a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 169a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 170a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 171a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 172a30f8f8cSSatish Balay else *bap = value; \ 173a30f8f8cSSatish Balay goto b_noinsert; \ 174a30f8f8cSSatish Balay } \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 177a45adfd6SMatthew Knepley else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 178a30f8f8cSSatish Balay if (nrow >= rmax) { \ 179a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 180*1302d50aSBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 181a30f8f8cSSatish Balay MatScalar *new_a; \ 182a30f8f8cSSatish Balay \ 183a45adfd6SMatthew Knepley if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 184a30f8f8cSSatish Balay \ 185a30f8f8cSSatish Balay /* malloc new storage space */ \ 186*1302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 18782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 188*1302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 189a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 190a30f8f8cSSatish Balay \ 191a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 192a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 193a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 194*1302d50aSBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 195a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 196*1302d50aSBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 200a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay /* free up old matrix storage */ \ 202a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 204a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 208a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 209a30f8f8cSSatish Balay \ 210a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 211a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 212*1302d50aSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 213a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 214a30f8f8cSSatish Balay b->reallocs++; \ 215a30f8f8cSSatish Balay b->nz++; \ 216a30f8f8cSSatish Balay } \ 217a30f8f8cSSatish Balay N = nrow++ - 1; \ 218a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 219a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 220a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 221a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 224a30f8f8cSSatish Balay rp[_i] = bcol; \ 225a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 226a30f8f8cSSatish Balay b_noinsert:; \ 227a30f8f8cSSatish Balay bilen[brow] = nrow; \ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay #endif 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 234*1302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 235a30f8f8cSSatish Balay { 236a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 237dfbe8321SBarry Smith PetscErrorCode ierr; 238*1302d50aSBarry Smith PetscInt i,N = m*n; 239a30f8f8cSSatish Balay MatScalar *vsingle; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay PetscFunctionBegin; 242a30f8f8cSSatish Balay if (N > b->setvalueslen) { 243a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 245a30f8f8cSSatish Balay b->setvalueslen = N; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay for (i=0; i<N; i++) { 250a30f8f8cSSatish Balay vsingle[i] = v[i]; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 258*1302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 260a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 261dfbe8321SBarry Smith PetscErrorCode ierr; 262*1302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 263a30f8f8cSSatish Balay MatScalar *vsingle; 264a30f8f8cSSatish Balay 265a30f8f8cSSatish Balay PetscFunctionBegin; 266a30f8f8cSSatish Balay if (N > b->setvalueslen) { 267a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 269a30f8f8cSSatish Balay b->setvalueslen = N; 270a30f8f8cSSatish Balay } 271a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 272a30f8f8cSSatish Balay for (i=0; i<N; i++) { 273a30f8f8cSSatish Balay vsingle[i] = v[i]; 274a30f8f8cSSatish Balay } 275a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 276a30f8f8cSSatish Balay PetscFunctionReturn(0); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay 2794a2ae208SSatish Balay #undef __FUNCT__ 2804a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 281*1302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 282a30f8f8cSSatish Balay { 283a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 284dfbe8321SBarry Smith PetscErrorCode ierr; 285*1302d50aSBarry Smith PetscInt i,N = m*n; 286a30f8f8cSSatish Balay MatScalar *vsingle; 287a30f8f8cSSatish Balay 288a30f8f8cSSatish Balay PetscFunctionBegin; 289*1302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 2904d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 291a30f8f8cSSatish Balay } 292a30f8f8cSSatish Balay 2934a2ae208SSatish Balay #undef __FUNCT__ 2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 295*1302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 296a30f8f8cSSatish Balay { 297a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 298dfbe8321SBarry Smith PetscErrorCode ierr; 299*1302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 300a30f8f8cSSatish Balay MatScalar *vsingle; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay PetscFunctionBegin; 303*1302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 3044d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay #endif 307a30f8f8cSSatish Balay 308a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 309a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 310a30f8f8cSSatish Balay */ 3114a2ae208SSatish Balay #undef __FUNCT__ 312e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 313*1302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 314a30f8f8cSSatish Balay { 315a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 316a30f8f8cSSatish Balay MatScalar value; 317b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 318dfbe8321SBarry Smith PetscErrorCode ierr; 319*1302d50aSBarry Smith PetscInt i,j,row,col; 320*1302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 321*1302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 322*1302d50aSBarry Smith PetscInt cend_orig=baij->cend_bs,bs=baij->bs; 323a30f8f8cSSatish Balay 324a30f8f8cSSatish Balay /* Some Variables required in the macro */ 325a30f8f8cSSatish Balay Mat A = baij->A; 326a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 327*1302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 328a30f8f8cSSatish Balay MatScalar *aa=a->a; 329a30f8f8cSSatish Balay 330a30f8f8cSSatish Balay Mat B = baij->B; 331a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 332*1302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 333a30f8f8cSSatish Balay MatScalar *ba=b->a; 334a30f8f8cSSatish Balay 335*1302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 336*1302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 337a30f8f8cSSatish Balay MatScalar *ap,*bap; 338a30f8f8cSSatish Balay 339a30f8f8cSSatish Balay /* for stash */ 340*1302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 341f65c83cfSHong Zhang MatScalar *v_loc=0; 342a30f8f8cSSatish Balay 343a30f8f8cSSatish Balay PetscFunctionBegin; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay if(!baij->donotstash){ 346*1302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 34782502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 348a30f8f8cSSatish Balay } 349a30f8f8cSSatish Balay 350a30f8f8cSSatish Balay for (i=0; i<m; i++) { 351a30f8f8cSSatish Balay if (im[i] < 0) continue; 352a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 353590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 354a30f8f8cSSatish Balay #endif 355a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 356a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 357a30f8f8cSSatish Balay for (j=0; j<n; j++) { 358f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 359a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 360a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 361a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 362a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 363a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 364a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 365a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 366a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 367a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 368590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);} 369a30f8f8cSSatish Balay #endif 370a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 371a30f8f8cSSatish Balay if (mat->was_assembled) { 372a30f8f8cSSatish Balay if (!baij->colmap) { 373653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 374a30f8f8cSSatish Balay } 375a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 376a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 37771730473SSatish Balay col = col - 1; 378a30f8f8cSSatish Balay #else 37971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 380a30f8f8cSSatish Balay #endif 381a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 382a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 383a30f8f8cSSatish Balay col = in[j]; 384a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 385a30f8f8cSSatish Balay B = baij->B; 386a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 387a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 388a30f8f8cSSatish Balay ba=b->a; 38971730473SSatish Balay } else col += in[j]%bs; 390a30f8f8cSSatish Balay } else col = in[j]; 391a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 392a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 393a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } else { /* off processor entry */ 397a30f8f8cSSatish Balay if (!baij->donotstash) { 398a30f8f8cSSatish Balay n_loc = 0; 399a30f8f8cSSatish Balay for (j=0; j<n; j++){ 400f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 401a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 402a30f8f8cSSatish Balay if (roworiented) { 403a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 404a30f8f8cSSatish Balay } else { 405a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 406a30f8f8cSSatish Balay } 407a30f8f8cSSatish Balay n_loc++; 408a30f8f8cSSatish Balay } 409a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 410a30f8f8cSSatish Balay } 411a30f8f8cSSatish Balay } 412a30f8f8cSSatish Balay } 413a30f8f8cSSatish Balay 414a30f8f8cSSatish Balay if(!baij->donotstash){ 415a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 416a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay PetscFunctionReturn(0); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay 4214a2ae208SSatish Balay #undef __FUNCT__ 422e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 423*1302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 424a30f8f8cSSatish Balay { 4250880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 426f15d580aSBarry Smith const MatScalar *value; 427f15d580aSBarry Smith MatScalar *barray=baij->barray; 4280880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 429dfbe8321SBarry Smith PetscErrorCode ierr; 430*1302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 431*1302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 432*1302d50aSBarry Smith PetscInt cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4330880e062SHong Zhang 434a30f8f8cSSatish Balay PetscFunctionBegin; 4350880e062SHong Zhang if(!barray) { 4360880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4370880e062SHong Zhang baij->barray = barray; 4380880e062SHong Zhang } 4390880e062SHong Zhang 4400880e062SHong Zhang if (roworiented) { 4410880e062SHong Zhang stepval = (n-1)*bs; 4420880e062SHong Zhang } else { 4430880e062SHong Zhang stepval = (m-1)*bs; 4440880e062SHong Zhang } 4450880e062SHong Zhang for (i=0; i<m; i++) { 4460880e062SHong Zhang if (im[i] < 0) continue; 4470880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 448590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 4490880e062SHong Zhang #endif 4500880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4510880e062SHong Zhang row = im[i] - rstart; 4520880e062SHong Zhang for (j=0; j<n; j++) { 4530880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4540880e062SHong Zhang if ((roworiented) && (n == 1)) { 455f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4560880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 457f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4580880e062SHong Zhang } else { /* Here a copy is required */ 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4650880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4660880e062SHong Zhang *barray++ = *value++; 4670880e062SHong Zhang } 4680880e062SHong Zhang } 4690880e062SHong Zhang barray -=bs2; 4700880e062SHong Zhang } 4710880e062SHong Zhang 4720880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4730880e062SHong Zhang col = in[j] - cstart; 4740880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4750880e062SHong Zhang } 4760880e062SHong Zhang else if (in[j] < 0) continue; 4770880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 478590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 4790880e062SHong Zhang #endif 4800880e062SHong Zhang else { 4810880e062SHong Zhang if (mat->was_assembled) { 4820880e062SHong Zhang if (!baij->colmap) { 483653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4840880e062SHong Zhang } 4850880e062SHong Zhang 4860880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4870880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 488*1302d50aSBarry Smith { PetscInt data; 4890880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4900880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4910880e062SHong Zhang } 4920880e062SHong Zhang #else 4930880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4940880e062SHong Zhang #endif 4950880e062SHong Zhang #endif 4960880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4970880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4980880e062SHong Zhang col = (col - 1)/bs; 4990880e062SHong Zhang #else 5000880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5010880e062SHong Zhang #endif 5020880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 5030880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5040880e062SHong Zhang col = in[j]; 5050880e062SHong Zhang } 5060880e062SHong Zhang } 5070880e062SHong Zhang else col = in[j]; 508e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5090880e062SHong Zhang } 5100880e062SHong Zhang } 5110880e062SHong Zhang } else { 5120880e062SHong Zhang if (!baij->donotstash) { 5130880e062SHong Zhang if (roworiented) { 5140880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5150880e062SHong Zhang } else { 5160880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5170880e062SHong Zhang } 5180880e062SHong Zhang } 5190880e062SHong Zhang } 5200880e062SHong Zhang } 5210880e062SHong Zhang PetscFunctionReturn(0); 522a30f8f8cSSatish Balay } 523a30f8f8cSSatish Balay 524a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 525*1302d50aSBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 526*1302d50aSBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 527*1302d50aSBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 5284a2ae208SSatish Balay #undef __FUNCT__ 5294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 530*1302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 531a30f8f8cSSatish Balay { 532a30f8f8cSSatish Balay PetscFunctionBegin; 533*1302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 53496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 535a30f8f8cSSatish Balay } 536a30f8f8cSSatish Balay 5374a2ae208SSatish Balay #undef __FUNCT__ 5384a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 539*1302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 540a30f8f8cSSatish Balay { 541a30f8f8cSSatish Balay PetscFunctionBegin; 542*1302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 54396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 548*1302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552*1302d50aSBarry Smith PetscInt bs=baij->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 553*1302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 558590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]); 563590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data --; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay } else { 58529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay PetscFunctionReturn(0); 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay 5914a2ae208SSatish Balay #undef __FUNCT__ 5924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 593dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 594a30f8f8cSSatish Balay { 595a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 596dfbe8321SBarry Smith PetscErrorCode ierr; 597a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 598a30f8f8cSSatish Balay 599a30f8f8cSSatish Balay PetscFunctionBegin; 600a30f8f8cSSatish Balay if (baij->size == 1) { 601a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 602a30f8f8cSSatish Balay } else { 603a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 604f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 605a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 607a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 608a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 609a30f8f8cSSatish Balay /* 61056faa61eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 61156faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 612a30f8f8cSSatish Balay */ 613d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 614a30f8f8cSSatish Balay /* 61556faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 61656faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); */ 617a30f8f8cSSatish Balay 618a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 619a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 620a30f8f8cSSatish Balay } else { 62129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 622a30f8f8cSSatish Balay } 623a30f8f8cSSatish Balay } 624a30f8f8cSSatish Balay PetscFunctionReturn(0); 625a30f8f8cSSatish Balay } 626a30f8f8cSSatish Balay 627a30f8f8cSSatish Balay /* 628a30f8f8cSSatish Balay Creates the hash table, and sets the table 629a30f8f8cSSatish Balay This table is created only once. 630a30f8f8cSSatish Balay If new entried need to be added to the matrix 631a30f8f8cSSatish Balay then the hash table has to be destroyed and 632a30f8f8cSSatish Balay recreated. 633a30f8f8cSSatish Balay */ 6344a2ae208SSatish Balay #undef __FUNCT__ 6354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 636dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 637a30f8f8cSSatish Balay { 638a30f8f8cSSatish Balay PetscFunctionBegin; 639*1302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 64096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 641a30f8f8cSSatish Balay } 642a30f8f8cSSatish Balay 6434a2ae208SSatish Balay #undef __FUNCT__ 6444a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 645dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 646a30f8f8cSSatish Balay { 647a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 648dfbe8321SBarry Smith PetscErrorCode ierr; 649*1302d50aSBarry Smith PetscInt nstash,reallocs; 650a30f8f8cSSatish Balay InsertMode addv; 651a30f8f8cSSatish Balay 652a30f8f8cSSatish Balay PetscFunctionBegin; 653a30f8f8cSSatish Balay if (baij->donotstash) { 654a30f8f8cSSatish Balay PetscFunctionReturn(0); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay 657a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 658a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 659a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 66029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 661a30f8f8cSSatish Balay } 662a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 663a30f8f8cSSatish Balay 664a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 665a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 666a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 667b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 668a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 669b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 670a30f8f8cSSatish Balay PetscFunctionReturn(0); 671a30f8f8cSSatish Balay } 672a30f8f8cSSatish Balay 6734a2ae208SSatish Balay #undef __FUNCT__ 6744a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 675dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 676a30f8f8cSSatish Balay { 677a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 678a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 679a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 6806849ba73SBarry Smith PetscErrorCode ierr; 681*1302d50aSBarry Smith PetscInt i,j,rstart,ncols,n,flg,bs2=baij->bs2; 682*1302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 683a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 684a30f8f8cSSatish Balay MatScalar *val; 685a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 686a30f8f8cSSatish Balay 687a30f8f8cSSatish Balay PetscFunctionBegin; 688a30f8f8cSSatish Balay 689a30f8f8cSSatish Balay if (!baij->donotstash) { 690a30f8f8cSSatish Balay while (1) { 691a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 692a30f8f8cSSatish Balay /* 69356faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 69456faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); 695a30f8f8cSSatish Balay */ 696a30f8f8cSSatish Balay if (!flg) break; 697a30f8f8cSSatish Balay 698a30f8f8cSSatish Balay for (i=0; i<n;) { 699a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 700a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 701a30f8f8cSSatish Balay if (j < n) ncols = j-i; 702a30f8f8cSSatish Balay else ncols = n-i; 703a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 704a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 705a30f8f8cSSatish Balay i = j; 706a30f8f8cSSatish Balay } 707a30f8f8cSSatish Balay } 708a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 709a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 710a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 711a30f8f8cSSatish Balay restore the original flags */ 712a30f8f8cSSatish Balay r1 = baij->roworiented; 713a30f8f8cSSatish Balay r2 = a->roworiented; 714a30f8f8cSSatish Balay r3 = b->roworiented; 715a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 716a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 717a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 718a30f8f8cSSatish Balay while (1) { 719a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 720a30f8f8cSSatish Balay if (!flg) break; 721a30f8f8cSSatish Balay 722a30f8f8cSSatish Balay for (i=0; i<n;) { 723a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 724a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 725a30f8f8cSSatish Balay if (j < n) ncols = j-i; 726a30f8f8cSSatish Balay else ncols = n-i; 727a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 728a30f8f8cSSatish Balay i = j; 729a30f8f8cSSatish Balay } 730a30f8f8cSSatish Balay } 731a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 732a30f8f8cSSatish Balay baij->roworiented = r1; 733a30f8f8cSSatish Balay a->roworiented = r2; 734a30f8f8cSSatish Balay b->roworiented = r3; 735a30f8f8cSSatish Balay } 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 738a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 739a30f8f8cSSatish Balay 740a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 741a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 742a30f8f8cSSatish Balay /* 743a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 744a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 745a30f8f8cSSatish Balay */ 746a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 747a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 748a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 749c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 750a30f8f8cSSatish Balay } 751a30f8f8cSSatish Balay } 752a30f8f8cSSatish Balay 753a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 75440781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 755a30f8f8cSSatish Balay } 756a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 758a30f8f8cSSatish Balay 759a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 760a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 761f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 762a30f8f8cSSatish Balay baij->ht_total_ct = 0; 763a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 764a30f8f8cSSatish Balay } 765a30f8f8cSSatish Balay #endif 766a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 767c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 768a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 769a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay 772a30f8f8cSSatish Balay if (baij->rowvalues) { 773a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 774a30f8f8cSSatish Balay baij->rowvalues = 0; 775a30f8f8cSSatish Balay } 7765222a1afSHong Zhang 777a30f8f8cSSatish Balay PetscFunctionReturn(0); 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay 7804a2ae208SSatish Balay #undef __FUNCT__ 7814a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7826849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 783a30f8f8cSSatish Balay { 784a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 785dfbe8321SBarry Smith PetscErrorCode ierr; 786*1302d50aSBarry Smith PetscInt bs = baij->bs; 787*1302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 78832077d6dSBarry Smith PetscTruth iascii,isdraw; 789b0a32e0cSBarry Smith PetscViewer sviewer; 790f3ef73ceSBarry Smith PetscViewerFormat format; 791a30f8f8cSSatish Balay 792a30f8f8cSSatish Balay PetscFunctionBegin; 79332077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 794fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 79532077d6dSBarry Smith if (iascii) { 796b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 797456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 798a30f8f8cSSatish Balay MatInfo info; 799a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 800a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 801b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 802b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 803a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 804a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 805b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 806a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 807b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 808b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 809a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 810a30f8f8cSSatish Balay PetscFunctionReturn(0); 811fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 812b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 813a30f8f8cSSatish Balay PetscFunctionReturn(0); 814a30f8f8cSSatish Balay } 815a30f8f8cSSatish Balay } 816a30f8f8cSSatish Balay 817a30f8f8cSSatish Balay if (isdraw) { 818b0a32e0cSBarry Smith PetscDraw draw; 819a30f8f8cSSatish Balay PetscTruth isnull; 820b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 821b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 822a30f8f8cSSatish Balay } 823a30f8f8cSSatish Balay 824a30f8f8cSSatish Balay if (size == 1) { 825e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 826a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 827a30f8f8cSSatish Balay } else { 828a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 829a30f8f8cSSatish Balay Mat A; 83065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 83165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 832*1302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 833a30f8f8cSSatish Balay MatScalar *a; 834a30f8f8cSSatish Balay 835f204ca49SKris Buschelman /* Should this be the same type as mat? */ 836a30f8f8cSSatish Balay if (!rank) { 837f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 838a30f8f8cSSatish Balay } else { 839f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 840a30f8f8cSSatish Balay } 841f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 842f204ca49SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,baij->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 843b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 844a30f8f8cSSatish Balay 845a30f8f8cSSatish Balay /* copy over the A part */ 84665d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 847a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 848*1302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 849a30f8f8cSSatish Balay 850a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 851a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 852a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 853a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 854a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 855a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 856a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 857a30f8f8cSSatish Balay col++; a += bs; 858a30f8f8cSSatish Balay } 859a30f8f8cSSatish Balay } 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay /* copy over the B part */ 86265d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 86365d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 864a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 865a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 866a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 867a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 868a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 869a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 870a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 871a30f8f8cSSatish Balay col++; a += bs; 872a30f8f8cSSatish Balay } 873a30f8f8cSSatish Balay } 874a30f8f8cSSatish Balay } 875a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 876a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 877a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 878a30f8f8cSSatish Balay /* 879a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 880b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 881a30f8f8cSSatish Balay */ 882b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 88365d70643SHong Zhang if (!rank) { 884e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 885a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 886a30f8f8cSSatish Balay } 887b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 888a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 889a30f8f8cSSatish Balay } 890a30f8f8cSSatish Balay PetscFunctionReturn(0); 891a30f8f8cSSatish Balay } 892a30f8f8cSSatish Balay 8934a2ae208SSatish Balay #undef __FUNCT__ 8944a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 895dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 896a30f8f8cSSatish Balay { 897dfbe8321SBarry Smith PetscErrorCode ierr; 89832077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 899a30f8f8cSSatish Balay 900a30f8f8cSSatish Balay PetscFunctionBegin; 90132077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 902fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 903b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 904fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 90532077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 906a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 907a30f8f8cSSatish Balay } else { 908*1302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 909a30f8f8cSSatish Balay } 910a30f8f8cSSatish Balay PetscFunctionReturn(0); 911a30f8f8cSSatish Balay } 912a30f8f8cSSatish Balay 9134a2ae208SSatish Balay #undef __FUNCT__ 9144a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 915dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 916a30f8f8cSSatish Balay { 917a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 918dfbe8321SBarry Smith PetscErrorCode ierr; 919a30f8f8cSSatish Balay 920a30f8f8cSSatish Balay PetscFunctionBegin; 921a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 922b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 923a30f8f8cSSatish Balay #endif 924a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 925a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 926a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 927a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 928a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 929a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 930a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 931a30f8f8cSSatish Balay #else 932a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 933a30f8f8cSSatish Balay #endif 934a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 935a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 936a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 93740781036SHong Zhang if (baij->slvec0) { 93840781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 93940781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 94040781036SHong Zhang } 94140781036SHong Zhang if (baij->slvec1) { 94240781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 94340781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 94440781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 94540781036SHong Zhang } 94640781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 947a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 948a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 949a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 950a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 951a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 952a30f8f8cSSatish Balay #endif 953a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 954901853e0SKris Buschelman 955901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 956901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 957901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 958901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 959a30f8f8cSSatish Balay PetscFunctionReturn(0); 960a30f8f8cSSatish Balay } 961a30f8f8cSSatish Balay 9624a2ae208SSatish Balay #undef __FUNCT__ 963a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 964dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 965a9d4b620SHong Zhang { 966a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 967dfbe8321SBarry Smith PetscErrorCode ierr; 968*1302d50aSBarry Smith PetscInt nt,mbs=a->mbs,bs=a->bs; 969a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 970a9d4b620SHong Zhang 971a9d4b620SHong Zhang PetscFunctionBegin; 972a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 973a9d4b620SHong Zhang if (nt != A->n) { 974a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 975a9d4b620SHong Zhang } 976a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 977a9d4b620SHong Zhang if (nt != A->m) { 978a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 979a9d4b620SHong Zhang } 980a9d4b620SHong Zhang 981a9d4b620SHong Zhang /* diagonal part */ 982a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 983a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 984a9d4b620SHong Zhang 985a9d4b620SHong Zhang /* subdiagonal part */ 986a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 987a9d4b620SHong Zhang 988a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9891ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9901ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 991a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9921ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 993a9d4b620SHong Zhang 994a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9951ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 996a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 997a9d4b620SHong Zhang 998a9d4b620SHong Zhang /* supperdiagonal part */ 999a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1000a9d4b620SHong Zhang 1001a9d4b620SHong Zhang PetscFunctionReturn(0); 1002a9d4b620SHong Zhang } 1003a9d4b620SHong Zhang 1004a9d4b620SHong Zhang #undef __FUNCT__ 100540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 1006dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1007a30f8f8cSSatish Balay { 1008a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1009dfbe8321SBarry Smith PetscErrorCode ierr; 1010*1302d50aSBarry Smith PetscInt nt; 1011a30f8f8cSSatish Balay 1012a30f8f8cSSatish Balay PetscFunctionBegin; 1013a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1014b5df2d14SHong Zhang if (nt != A->n) { 101529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1016a30f8f8cSSatish Balay } 1017a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1018b5df2d14SHong Zhang if (nt != A->m) { 101929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1020a30f8f8cSSatish Balay } 102165d70643SHong Zhang 1022b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1023b941877fSHong Zhang /* do diagonal part */ 1024b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1025b941877fSHong Zhang /* do supperdiagonal part */ 1026b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1027b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1028b941877fSHong Zhang /* do subdiagonal part */ 1029b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1030b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1031b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 103265d70643SHong Zhang 1033a30f8f8cSSatish Balay PetscFunctionReturn(0); 1034a30f8f8cSSatish Balay } 1035a30f8f8cSSatish Balay 10364a2ae208SSatish Balay #undef __FUNCT__ 10374a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1038dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1039a30f8f8cSSatish Balay { 1040de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1041dfbe8321SBarry Smith PetscErrorCode ierr; 1042*1302d50aSBarry Smith PetscInt mbs=a->mbs,bs=a->bs; 1043a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1044a9d4b620SHong Zhang 1045a9d4b620SHong Zhang PetscFunctionBegin; 1046a9d4b620SHong Zhang /* 104756faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 104856faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1049a9d4b620SHong Zhang */ 1050a9d4b620SHong Zhang /* diagonal part */ 1051a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1052a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1053a9d4b620SHong Zhang 1054a9d4b620SHong Zhang /* subdiagonal part */ 1055a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1056a9d4b620SHong Zhang 1057a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10581ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10591ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1060a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 10611ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1062a9d4b620SHong Zhang 1063a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 10641ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1065a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1066a9d4b620SHong Zhang 1067a9d4b620SHong Zhang /* supperdiagonal part */ 1068a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1069a9d4b620SHong Zhang 1070a9d4b620SHong Zhang PetscFunctionReturn(0); 1071a9d4b620SHong Zhang } 1072a9d4b620SHong Zhang 1073a9d4b620SHong Zhang #undef __FUNCT__ 1074a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1075dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1076a9d4b620SHong Zhang { 1077a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1078dfbe8321SBarry Smith PetscErrorCode ierr; 1079a30f8f8cSSatish Balay 1080a30f8f8cSSatish Balay PetscFunctionBegin; 1081b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1082b941877fSHong Zhang /* do diagonal part */ 1083b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1084b941877fSHong Zhang /* do supperdiagonal part */ 1085b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1086de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1087de8b6608SHong Zhang 1088b941877fSHong Zhang /* do subdiagonal part */ 1089a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1090a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1091a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1092aa482183SHong Zhang 1093a30f8f8cSSatish Balay PetscFunctionReturn(0); 1094a30f8f8cSSatish Balay } 1095a30f8f8cSSatish Balay 10964a2ae208SSatish Balay #undef __FUNCT__ 10974a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1098dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1099a30f8f8cSSatish Balay { 1100dfbe8321SBarry Smith PetscErrorCode ierr; 11015a7c0312SHong Zhang 1102a30f8f8cSSatish Balay PetscFunctionBegin; 11035a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 11045a7c0312SHong Zhang PetscFunctionReturn(0); 1105a30f8f8cSSatish Balay } 1106a30f8f8cSSatish Balay 11074a2ae208SSatish Balay #undef __FUNCT__ 11084a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1109dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1110a30f8f8cSSatish Balay { 1111dfbe8321SBarry Smith PetscErrorCode ierr; 11125a7c0312SHong Zhang 1113a30f8f8cSSatish Balay PetscFunctionBegin; 11145a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 11155a7c0312SHong Zhang PetscFunctionReturn(0); 1116a30f8f8cSSatish Balay } 1117a30f8f8cSSatish Balay 1118a30f8f8cSSatish Balay /* 1119a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1120a30f8f8cSSatish Balay diagonal block 1121a30f8f8cSSatish Balay */ 11224a2ae208SSatish Balay #undef __FUNCT__ 11234a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1124dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1125a30f8f8cSSatish Balay { 1126a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1127dfbe8321SBarry Smith PetscErrorCode ierr; 1128a30f8f8cSSatish Balay 1129a30f8f8cSSatish Balay PetscFunctionBegin; 113029bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1131a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1132a30f8f8cSSatish Balay PetscFunctionReturn(0); 1133a30f8f8cSSatish Balay } 1134a30f8f8cSSatish Balay 11354a2ae208SSatish Balay #undef __FUNCT__ 11364a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1137dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1138a30f8f8cSSatish Balay { 1139a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1140dfbe8321SBarry Smith PetscErrorCode ierr; 1141a30f8f8cSSatish Balay 1142a30f8f8cSSatish Balay PetscFunctionBegin; 1143a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1144a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1145a30f8f8cSSatish Balay PetscFunctionReturn(0); 1146a30f8f8cSSatish Balay } 1147a30f8f8cSSatish Balay 11484a2ae208SSatish Balay #undef __FUNCT__ 11494a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 1150*1302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1151a30f8f8cSSatish Balay { 1152a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 115387828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 11546849ba73SBarry Smith PetscErrorCode ierr; 1155*1302d50aSBarry Smith PetscInt bs = mat->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1156*1302d50aSBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1157*1302d50aSBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstart; 1158a30f8f8cSSatish Balay 1159a30f8f8cSSatish Balay PetscFunctionBegin; 116029bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1161a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1162a30f8f8cSSatish Balay 1163a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1164a30f8f8cSSatish Balay /* 1165a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1166a30f8f8cSSatish Balay */ 1167a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1168a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1169*1302d50aSBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1170a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1171a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1172a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1173a30f8f8cSSatish Balay } 1174*1302d50aSBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1175*1302d50aSBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1176a30f8f8cSSatish Balay } 1177a30f8f8cSSatish Balay 117829bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1179a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1180a30f8f8cSSatish Balay 1181a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1182a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1183a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1184a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1185a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1186a30f8f8cSSatish Balay nztot = nzA + nzB; 1187a30f8f8cSSatish Balay 1188a30f8f8cSSatish Balay cmap = mat->garray; 1189a30f8f8cSSatish Balay if (v || idx) { 1190a30f8f8cSSatish Balay if (nztot) { 1191a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1192*1302d50aSBarry Smith PetscInt imark = -1; 1193a30f8f8cSSatish Balay if (v) { 1194a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1195a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1196a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1197a30f8f8cSSatish Balay else break; 1198a30f8f8cSSatish Balay } 1199a30f8f8cSSatish Balay imark = i; 1200a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1201a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1202a30f8f8cSSatish Balay } 1203a30f8f8cSSatish Balay if (idx) { 1204a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1205a30f8f8cSSatish Balay if (imark > -1) { 1206a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1207a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1208a30f8f8cSSatish Balay } 1209a30f8f8cSSatish Balay } else { 1210a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1211a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1212a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1213a30f8f8cSSatish Balay else break; 1214a30f8f8cSSatish Balay } 1215a30f8f8cSSatish Balay imark = i; 1216a30f8f8cSSatish Balay } 1217a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1218a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1219a30f8f8cSSatish Balay } 1220a30f8f8cSSatish Balay } else { 1221a30f8f8cSSatish Balay if (idx) *idx = 0; 1222a30f8f8cSSatish Balay if (v) *v = 0; 1223a30f8f8cSSatish Balay } 1224a30f8f8cSSatish Balay } 1225a30f8f8cSSatish Balay *nz = nztot; 1226a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1227a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1228a30f8f8cSSatish Balay PetscFunctionReturn(0); 1229a30f8f8cSSatish Balay } 1230a30f8f8cSSatish Balay 12314a2ae208SSatish Balay #undef __FUNCT__ 12324a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 1233*1302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1234a30f8f8cSSatish Balay { 1235a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1236a30f8f8cSSatish Balay 1237a30f8f8cSSatish Balay PetscFunctionBegin; 1238a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 123929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1240a30f8f8cSSatish Balay } 1241a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1242a30f8f8cSSatish Balay PetscFunctionReturn(0); 1243a30f8f8cSSatish Balay } 1244a30f8f8cSSatish Balay 12454a2ae208SSatish Balay #undef __FUNCT__ 12464a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1247*1302d50aSBarry Smith PetscErrorCode MatGetBlockSize_MPISBAIJ(Mat mat,PetscInt *bs) 1248a30f8f8cSSatish Balay { 1249a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1250a30f8f8cSSatish Balay 1251a30f8f8cSSatish Balay PetscFunctionBegin; 1252a30f8f8cSSatish Balay *bs = baij->bs; 1253a30f8f8cSSatish Balay PetscFunctionReturn(0); 1254a30f8f8cSSatish Balay } 1255a30f8f8cSSatish Balay 12564a2ae208SSatish Balay #undef __FUNCT__ 12574a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1258dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1259a30f8f8cSSatish Balay { 1260a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1261dfbe8321SBarry Smith PetscErrorCode ierr; 1262a30f8f8cSSatish Balay 1263a30f8f8cSSatish Balay PetscFunctionBegin; 1264a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1265a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1266a30f8f8cSSatish Balay PetscFunctionReturn(0); 1267a30f8f8cSSatish Balay } 1268a30f8f8cSSatish Balay 12694a2ae208SSatish Balay #undef __FUNCT__ 12704a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1271dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1272a30f8f8cSSatish Balay { 1273a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1274a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1275dfbe8321SBarry Smith PetscErrorCode ierr; 1276a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1277a30f8f8cSSatish Balay 1278a30f8f8cSSatish Balay PetscFunctionBegin; 1279f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1280a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1281a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1282a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1283a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1284a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1285a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1286a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1287a30f8f8cSSatish Balay info->nz_used = isend[0]; 1288a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1289a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1290a30f8f8cSSatish Balay info->memory = isend[3]; 1291a30f8f8cSSatish Balay info->mallocs = isend[4]; 1292a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1293d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1294a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1295a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1296a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1297a30f8f8cSSatish Balay info->memory = irecv[3]; 1298a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1299a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1300d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1301a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1302a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1303a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1304a30f8f8cSSatish Balay info->memory = irecv[3]; 1305a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1306a30f8f8cSSatish Balay } else { 1307*1302d50aSBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",flag); 1308a30f8f8cSSatish Balay } 1309f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1310f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1311f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1312f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1313a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1314a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1315a30f8f8cSSatish Balay info->factor_mallocs = 0; 1316a30f8f8cSSatish Balay PetscFunctionReturn(0); 1317a30f8f8cSSatish Balay } 1318a30f8f8cSSatish Balay 13194a2ae208SSatish Balay #undef __FUNCT__ 13204a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1321dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1322a30f8f8cSSatish Balay { 1323a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1324dfbe8321SBarry Smith PetscErrorCode ierr; 1325a30f8f8cSSatish Balay 1326a30f8f8cSSatish Balay PetscFunctionBegin; 1327e98b92d7SKris Buschelman switch (op) { 1328e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1329e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1330e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1331e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1332e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1333e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1334e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1335a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1336a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1337e98b92d7SKris Buschelman break; 1338e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1339a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1340a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1342e98b92d7SKris Buschelman break; 1343e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1344e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1345e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1346b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1347e98b92d7SKris Buschelman break; 1348e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1349a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1350a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1351a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1352e98b92d7SKris Buschelman break; 1353e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1354a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1355e98b92d7SKris Buschelman break; 1356e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 135729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1358e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1359a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1360e98b92d7SKris Buschelman break; 13619a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 13629a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 13639a4540c5SBarry Smith case MAT_HERMITIAN: 13649a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 136577e54ba9SKris Buschelman case MAT_SYMMETRIC: 136677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13679a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 13689a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 13699a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 137077e54ba9SKris Buschelman break; 1371e98b92d7SKris Buschelman default: 137229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1373a30f8f8cSSatish Balay } 1374a30f8f8cSSatish Balay PetscFunctionReturn(0); 1375a30f8f8cSSatish Balay } 1376a30f8f8cSSatish Balay 13774a2ae208SSatish Balay #undef __FUNCT__ 13788115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1379dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1380a30f8f8cSSatish Balay { 1381dfbe8321SBarry Smith PetscErrorCode ierr; 1382a30f8f8cSSatish Balay PetscFunctionBegin; 1383999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13848115998fSBarry Smith PetscFunctionReturn(0); 1385a30f8f8cSSatish Balay } 1386a30f8f8cSSatish Balay 13874a2ae208SSatish Balay #undef __FUNCT__ 13884a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1389dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1390a30f8f8cSSatish Balay { 1391a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1392a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1393dfbe8321SBarry Smith PetscErrorCode ierr; 1394*1302d50aSBarry Smith PetscInt s1,s2,s3; 1395a30f8f8cSSatish Balay 1396a30f8f8cSSatish Balay PetscFunctionBegin; 1397a30f8f8cSSatish Balay if (ll != rr) { 139829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1399a30f8f8cSSatish Balay } 1400a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1401a30f8f8cSSatish Balay if (rr) { 1402a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 140329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1404a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1405a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1406a30f8f8cSSatish Balay /*} if (ll) { */ 1407a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 140829bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1409a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1410a30f8f8cSSatish Balay /* } */ 1411a30f8f8cSSatish Balay /* scale the diagonal block */ 1412a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1413a30f8f8cSSatish Balay 1414a30f8f8cSSatish Balay /* if (rr) { */ 1415a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1416a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1417a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1418a30f8f8cSSatish Balay } 1419a30f8f8cSSatish Balay 1420a30f8f8cSSatish Balay PetscFunctionReturn(0); 1421a30f8f8cSSatish Balay } 1422a30f8f8cSSatish Balay 14234a2ae208SSatish Balay #undef __FUNCT__ 14244a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1425dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1426a30f8f8cSSatish Balay { 1427a30f8f8cSSatish Balay PetscFunctionBegin; 1428c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1429a30f8f8cSSatish Balay } 1430a30f8f8cSSatish Balay 14314a2ae208SSatish Balay #undef __FUNCT__ 14324a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1433dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1434a30f8f8cSSatish Balay { 1435a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1436a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1437*1302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1438dfbe8321SBarry Smith PetscErrorCode ierr; 1439a30f8f8cSSatish Balay 1440a30f8f8cSSatish Balay PetscFunctionBegin; 1441a30f8f8cSSatish Balay if (!a->rank) { 1442a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1443a30f8f8cSSatish Balay } 1444*1302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1445a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1446a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1447a30f8f8cSSatish Balay PetscFunctionReturn(0); 1448a30f8f8cSSatish Balay } 1449a30f8f8cSSatish Balay 14504a2ae208SSatish Balay #undef __FUNCT__ 14514a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1452dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1453a30f8f8cSSatish Balay { 1454f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1455dfbe8321SBarry Smith PetscErrorCode ierr; 1456a30f8f8cSSatish Balay 1457a30f8f8cSSatish Balay PetscFunctionBegin; 1458a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1459a30f8f8cSSatish Balay PetscFunctionReturn(0); 1460a30f8f8cSSatish Balay } 1461a30f8f8cSSatish Balay 14626849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1463a30f8f8cSSatish Balay 14644a2ae208SSatish Balay #undef __FUNCT__ 14654a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1466dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1467a30f8f8cSSatish Balay { 1468a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1469a30f8f8cSSatish Balay Mat a,b,c,d; 1470a30f8f8cSSatish Balay PetscTruth flg; 1471dfbe8321SBarry Smith PetscErrorCode ierr; 1472a30f8f8cSSatish Balay 1473a30f8f8cSSatish Balay PetscFunctionBegin; 1474a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1475a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1476a30f8f8cSSatish Balay 1477a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1478a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1479a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1480a30f8f8cSSatish Balay } 1481a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1482a30f8f8cSSatish Balay PetscFunctionReturn(0); 1483a30f8f8cSSatish Balay } 1484a30f8f8cSSatish Balay 14854a2ae208SSatish Balay #undef __FUNCT__ 14864a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1487dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1488273d9f13SBarry Smith { 1489dfbe8321SBarry Smith PetscErrorCode ierr; 1490273d9f13SBarry Smith 1491273d9f13SBarry Smith PetscFunctionBegin; 1492273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1493273d9f13SBarry Smith PetscFunctionReturn(0); 1494273d9f13SBarry Smith } 1495a5e6ed63SBarry Smith 1496a5e6ed63SBarry Smith #undef __FUNCT__ 1497a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 1498*1302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1499a5e6ed63SBarry Smith { 15006849ba73SBarry Smith PetscErrorCode ierr; 1501*1302d50aSBarry Smith PetscInt i; 1502a5e6ed63SBarry Smith PetscTruth flg; 1503a5e6ed63SBarry Smith 15046849ba73SBarry Smith PetscFunctionBegin; 1505a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1506a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1507a5e6ed63SBarry Smith if (!flg) { 1508*1302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1509a5e6ed63SBarry Smith } 1510a5e6ed63SBarry Smith } 1511a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1512a5e6ed63SBarry Smith PetscFunctionReturn(0); 1513a5e6ed63SBarry Smith } 1514a5e6ed63SBarry Smith 1515a5e6ed63SBarry Smith 1516a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1517a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1518a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1519a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1520a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1521a9d4b620SHong Zhang MatMult_MPISBAIJ, 152297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1523a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1524a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay 0, 152897304618SKris Buschelman /*10*/ 0, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay 0, 15312798e883SHong Zhang MatRelax_MPISBAIJ, 1532a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 153397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1534a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1535a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1536a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1537a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 153897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1539a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1540a30f8f8cSSatish Balay 0, 1541a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1542a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 154397304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 1546a30f8f8cSSatish Balay 0, 1547a30f8f8cSSatish Balay 0, 154897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1549b5df2d14SHong Zhang 0, 1550a30f8f8cSSatish Balay 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay 0, 155397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1554a30f8f8cSSatish Balay 0, 1555a30f8f8cSSatish Balay 0, 1556a30f8f8cSSatish Balay 0, 1557a30f8f8cSSatish Balay 0, 155897304618SKris Buschelman /*40*/ 0, 1559a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1560d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1561a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1562a30f8f8cSSatish Balay 0, 156397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1564a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1565a30f8f8cSSatish Balay 0, 1566a30f8f8cSSatish Balay 0, 1567a30f8f8cSSatish Balay 0, 156897304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ, 1569a30f8f8cSSatish Balay 0, 1570a30f8f8cSSatish Balay 0, 1571a30f8f8cSSatish Balay 0, 1572a30f8f8cSSatish Balay 0, 157397304618SKris Buschelman /*55*/ 0, 1574a30f8f8cSSatish Balay 0, 1575a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1576a30f8f8cSSatish Balay 0, 1577a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 157897304618SKris Buschelman /*60*/ 0, 1579a30f8f8cSSatish Balay 0, 1580a30f8f8cSSatish Balay 0, 15818a124369SBarry Smith MatGetPetscMaps_Petsc, 158224d5174aSHong Zhang 0, 158397304618SKris Buschelman /*65*/ 0, 158424d5174aSHong Zhang 0, 158524d5174aSHong Zhang 0, 158624d5174aSHong Zhang 0, 158724d5174aSHong Zhang 0, 158897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 158924d5174aSHong Zhang 0, 159097304618SKris Buschelman 0, 159197304618SKris Buschelman 0, 159297304618SKris Buschelman 0, 159397304618SKris Buschelman /*75*/ 0, 159497304618SKris Buschelman 0, 159597304618SKris Buschelman 0, 159697304618SKris Buschelman 0, 159797304618SKris Buschelman 0, 159897304618SKris Buschelman /*80*/ 0, 159997304618SKris Buschelman 0, 160097304618SKris Buschelman 0, 160197304618SKris Buschelman 0, 1602865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1603865e5f61SKris Buschelman /*85*/ 0, 1604865e5f61SKris Buschelman 0, 1605865e5f61SKris Buschelman 0, 1606865e5f61SKris Buschelman 0, 1607865e5f61SKris Buschelman 0, 1608865e5f61SKris Buschelman /*90*/ 0, 1609865e5f61SKris Buschelman 0, 1610865e5f61SKris Buschelman 0, 1611865e5f61SKris Buschelman 0, 1612865e5f61SKris Buschelman 0, 1613865e5f61SKris Buschelman /*95*/ 0, 1614865e5f61SKris Buschelman 0, 1615865e5f61SKris Buschelman 0, 1616865e5f61SKris Buschelman 0}; 1617a30f8f8cSSatish Balay 1618a30f8f8cSSatish Balay 1619a30f8f8cSSatish Balay EXTERN_C_BEGIN 16204a2ae208SSatish Balay #undef __FUNCT__ 16214a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1622dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1623a30f8f8cSSatish Balay { 1624a30f8f8cSSatish Balay PetscFunctionBegin; 1625a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1626a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1627a30f8f8cSSatish Balay PetscFunctionReturn(0); 1628a30f8f8cSSatish Balay } 1629a30f8f8cSSatish Balay EXTERN_C_END 1630a30f8f8cSSatish Balay 1631273d9f13SBarry Smith EXTERN_C_BEGIN 16324a2ae208SSatish Balay #undef __FUNCT__ 1633a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1634*1302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1635a23d5eceSKris Buschelman { 1636a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1637dfbe8321SBarry Smith PetscErrorCode ierr; 1638*1302d50aSBarry Smith PetscInt i,mbs,Mbs; 1639a23d5eceSKris Buschelman 1640a23d5eceSKris Buschelman PetscFunctionBegin; 1641a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1642a23d5eceSKris Buschelman 1643a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1644a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1645a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1646a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1647a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1648a23d5eceSKris Buschelman if (d_nnz) { 1649a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1650a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1651a23d5eceSKris Buschelman } 1652a23d5eceSKris Buschelman } 1653a23d5eceSKris Buschelman if (o_nnz) { 1654a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1655a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1656a23d5eceSKris Buschelman } 1657a23d5eceSKris Buschelman } 1658a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1659a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1660a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1661a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1662a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1663a23d5eceSKris Buschelman 1664a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1665a23d5eceSKris Buschelman mbs = B->m/bs; 1666a23d5eceSKris Buschelman Mbs = B->M/bs; 1667a23d5eceSKris Buschelman if (mbs*bs != B->m) { 1668a23d5eceSKris Buschelman SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1669a23d5eceSKris Buschelman } 1670a23d5eceSKris Buschelman 1671a23d5eceSKris Buschelman b->bs = bs; 1672a23d5eceSKris Buschelman b->bs2 = bs*bs; 1673a23d5eceSKris Buschelman b->mbs = mbs; 1674a23d5eceSKris Buschelman b->nbs = mbs; 1675a23d5eceSKris Buschelman b->Mbs = Mbs; 1676a23d5eceSKris Buschelman b->Nbs = Mbs; 1677a23d5eceSKris Buschelman 1678a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1679a23d5eceSKris Buschelman b->rowners[0] = 0; 1680a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1681a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1682a23d5eceSKris Buschelman } 1683a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1684a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1685a23d5eceSKris Buschelman b->cstart = b->rstart; 1686a23d5eceSKris Buschelman b->cend = b->rend; 1687a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1688a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1689a23d5eceSKris Buschelman } 1690a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1691a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1692a23d5eceSKris Buschelman 1693a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1694a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1695a23d5eceSKris Buschelman 16969c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 16979c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1698c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 16999c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 17009c097c71SKris Buschelman 17019c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 17024aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1703589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 17049c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 1705a23d5eceSKris Buschelman 1706a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1707a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1708a23d5eceSKris Buschelman 1709a23d5eceSKris Buschelman PetscFunctionReturn(0); 1710a23d5eceSKris Buschelman } 1711a23d5eceSKris Buschelman EXTERN_C_END 1712a23d5eceSKris Buschelman 17130bad9183SKris Buschelman /*MC 1714fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 17150bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 17160bad9183SKris Buschelman 17170bad9183SKris Buschelman Options Database Keys: 17180bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17190bad9183SKris Buschelman 17200bad9183SKris Buschelman Level: beginner 17210bad9183SKris Buschelman 17220bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17230bad9183SKris Buschelman M*/ 17240bad9183SKris Buschelman 1725a23d5eceSKris Buschelman EXTERN_C_BEGIN 1726a23d5eceSKris Buschelman #undef __FUNCT__ 17274a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1728dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1729b5df2d14SHong Zhang { 1730b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1731dfbe8321SBarry Smith PetscErrorCode ierr; 1732b5df2d14SHong Zhang PetscTruth flg; 1733b5df2d14SHong Zhang 1734b5df2d14SHong Zhang PetscFunctionBegin; 1735b5df2d14SHong Zhang 1736b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1737b0a32e0cSBarry Smith B->data = (void*)b; 1738b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1739b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1740b5df2d14SHong Zhang 1741b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1742b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1743b5df2d14SHong Zhang B->mapping = 0; 1744b5df2d14SHong Zhang B->factor = 0; 1745b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1746b5df2d14SHong Zhang 1747b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1748b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1749b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1750b5df2d14SHong Zhang 1751b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1752*1302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1753273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1754273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1755*1302d50aSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1756b5df2d14SHong Zhang 1757b5df2d14SHong Zhang /* build cache for off array entries formed */ 1758b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1759b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1760b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1761b5df2d14SHong Zhang b->garray = PETSC_NULL; 1762b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1763b5df2d14SHong Zhang 1764f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1765b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 176664a35ccbSBarry Smith b->setvalueslen = 0; 1767b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1768b5df2d14SHong Zhang #endif 1769b5df2d14SHong Zhang 1770b5df2d14SHong Zhang /* stuff used in block assembly */ 1771b5df2d14SHong Zhang b->barray = 0; 1772b5df2d14SHong Zhang 1773b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1774b5df2d14SHong Zhang b->lvec = 0; 1775b5df2d14SHong Zhang b->Mvctx = 0; 177640781036SHong Zhang b->slvec0 = 0; 177740781036SHong Zhang b->slvec0b = 0; 177840781036SHong Zhang b->slvec1 = 0; 177940781036SHong Zhang b->slvec1a = 0; 178040781036SHong Zhang b->slvec1b = 0; 178140781036SHong Zhang b->sMvctx = 0; 1782b5df2d14SHong Zhang 1783b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1784b5df2d14SHong Zhang b->rowindices = 0; 1785b5df2d14SHong Zhang b->rowvalues = 0; 1786b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1787b5df2d14SHong Zhang 1788b5df2d14SHong Zhang /* hash table stuff */ 1789b5df2d14SHong Zhang b->ht = 0; 1790b5df2d14SHong Zhang b->hd = 0; 1791b5df2d14SHong Zhang b->ht_size = 0; 1792b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1793b5df2d14SHong Zhang b->ht_fact = 0; 1794b5df2d14SHong Zhang b->ht_total_ct = 0; 1795b5df2d14SHong Zhang b->ht_insert_ct = 0; 1796b5df2d14SHong Zhang 1797e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1798b5df2d14SHong Zhang if (flg) { 1799f6275e2eSBarry Smith PetscReal fact = 1.39; 1800b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1801e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1802b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1803b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1804b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1805b5df2d14SHong Zhang } 1806b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1807b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1808b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1809b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1810b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1811b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1812b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1813b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1814b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1815a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1816a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1817a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 181823ce1328SBarry Smith B->symmetric = PETSC_TRUE; 181923ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 182023ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 182123ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1822b5df2d14SHong Zhang PetscFunctionReturn(0); 1823b5df2d14SHong Zhang } 1824273d9f13SBarry Smith EXTERN_C_END 1825b5df2d14SHong Zhang 1826209238afSKris Buschelman /*MC 1827002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1828209238afSKris Buschelman 1829209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1830209238afSKris Buschelman and MATMPISBAIJ otherwise. 1831209238afSKris Buschelman 1832209238afSKris Buschelman Options Database Keys: 1833209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1834209238afSKris Buschelman 1835209238afSKris Buschelman Level: beginner 1836209238afSKris Buschelman 1837209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1838209238afSKris Buschelman M*/ 1839209238afSKris Buschelman 1840209238afSKris Buschelman EXTERN_C_BEGIN 1841209238afSKris Buschelman #undef __FUNCT__ 1842209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1843dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A) 1844dfbe8321SBarry Smith { 18456849ba73SBarry Smith PetscErrorCode ierr; 1846*1302d50aSBarry Smith PetscMPIInt size; 1847209238afSKris Buschelman 1848209238afSKris Buschelman PetscFunctionBegin; 1849209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1850209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1851209238afSKris Buschelman if (size == 1) { 1852209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1853209238afSKris Buschelman } else { 1854209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1855209238afSKris Buschelman } 1856209238afSKris Buschelman PetscFunctionReturn(0); 1857209238afSKris Buschelman } 1858209238afSKris Buschelman EXTERN_C_END 1859209238afSKris Buschelman 18604a2ae208SSatish Balay #undef __FUNCT__ 18614a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1862b5df2d14SHong Zhang /*@C 1863b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1864b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1865b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1866b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1867b5df2d14SHong Zhang 1868b5df2d14SHong Zhang Collective on Mat 1869b5df2d14SHong Zhang 1870b5df2d14SHong Zhang Input Parameters: 1871b5df2d14SHong Zhang + A - the matrix 1872b5df2d14SHong Zhang . bs - size of blockk 1873b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1874b5df2d14SHong Zhang submatrix (same for all local rows) 1875b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18766d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18776d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18786d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1879b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1880b5df2d14SHong Zhang submatrix (same for all local rows). 1881b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1882b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1883b5df2d14SHong Zhang each block row) or PETSC_NULL. 1884b5df2d14SHong Zhang 1885b5df2d14SHong Zhang 1886b5df2d14SHong Zhang Options Database Keys: 1887b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1888b5df2d14SHong Zhang block calculations (much slower) 1889b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1890b5df2d14SHong Zhang 1891b5df2d14SHong Zhang Notes: 1892b5df2d14SHong Zhang 1893b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1894b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1895b5df2d14SHong Zhang 1896b5df2d14SHong Zhang Storage Information: 1897b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1898b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1899b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1900b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1901b5df2d14SHong Zhang 1902b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1903b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1904b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1905b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1906b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1907b5df2d14SHong Zhang 1908b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1909b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1910b5df2d14SHong Zhang 1911b5df2d14SHong Zhang .vb 1912b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1913b5df2d14SHong Zhang ------------------- 1914b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1915b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1916b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1917b5df2d14SHong Zhang ------------------- 1918b5df2d14SHong Zhang .ve 1919b5df2d14SHong Zhang 1920b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1921b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19226d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19236d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1924b5df2d14SHong Zhang 19256d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19266d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1927b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1928b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1929b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1930b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1931b5df2d14SHong Zhang matrices. 1932b5df2d14SHong Zhang 1933b5df2d14SHong Zhang Level: intermediate 1934b5df2d14SHong Zhang 1935b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1936b5df2d14SHong Zhang 1937b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1938b5df2d14SHong Zhang @*/ 1939*1302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1940b5df2d14SHong Zhang { 1941*1302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1942b5df2d14SHong Zhang 1943b5df2d14SHong Zhang PetscFunctionBegin; 1944a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1945a23d5eceSKris Buschelman if (f) { 1946a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1947b5df2d14SHong Zhang } 1948b5df2d14SHong Zhang PetscFunctionReturn(0); 1949b5df2d14SHong Zhang } 1950b5df2d14SHong Zhang 19514a2ae208SSatish Balay #undef __FUNCT__ 19524a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1953a30f8f8cSSatish Balay /*@C 1954a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1955a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1956a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1957a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1958a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1959a30f8f8cSSatish Balay 1960a30f8f8cSSatish Balay Collective on MPI_Comm 1961a30f8f8cSSatish Balay 1962a30f8f8cSSatish Balay Input Parameters: 1963a30f8f8cSSatish Balay + comm - MPI communicator 1964a30f8f8cSSatish Balay . bs - size of blockk 1965a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1966a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1967a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1968a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1969a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1970a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1971a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1972a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1973a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1974a30f8f8cSSatish Balay submatrix (same for all local rows) 1975a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19766d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19776d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19786d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1979a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1980a30f8f8cSSatish Balay submatrix (same for all local rows). 1981a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1982a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1983a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1984a30f8f8cSSatish Balay 1985a30f8f8cSSatish Balay Output Parameter: 1986a30f8f8cSSatish Balay . A - the matrix 1987a30f8f8cSSatish Balay 1988a30f8f8cSSatish Balay Options Database Keys: 1989a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1990a30f8f8cSSatish Balay block calculations (much slower) 1991a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1992a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1993a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay Notes: 1996a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1997a30f8f8cSSatish Balay (possibly both). 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2000a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay Storage Information: 2003a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2004a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2005a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2006a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2007a30f8f8cSSatish Balay 2008a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2009a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 2010a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2011a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2012a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2013a30f8f8cSSatish Balay 2014a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2015a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2016a30f8f8cSSatish Balay 2017a30f8f8cSSatish Balay .vb 2018a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2019a30f8f8cSSatish Balay ------------------- 2020a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2021a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2022a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2023a30f8f8cSSatish Balay ------------------- 2024a30f8f8cSSatish Balay .ve 2025a30f8f8cSSatish Balay 2026a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2027a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20286d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20296d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2030a30f8f8cSSatish Balay 20316d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20326d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2033a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2034a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2035a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2036a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2037a30f8f8cSSatish Balay matrices. 2038a30f8f8cSSatish Balay 2039a30f8f8cSSatish Balay Level: intermediate 2040a30f8f8cSSatish Balay 2041a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2042a30f8f8cSSatish Balay 2043a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2044a30f8f8cSSatish Balay @*/ 2045a30f8f8cSSatish Balay 2046*1302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2047a30f8f8cSSatish Balay { 20486849ba73SBarry Smith PetscErrorCode ierr; 2049*1302d50aSBarry Smith PetscMPIInt size; 2050a30f8f8cSSatish Balay 2051a30f8f8cSSatish Balay PetscFunctionBegin; 2052b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2053273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2054273d9f13SBarry Smith if (size > 1) { 2055b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2056b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2057273d9f13SBarry Smith } else { 2058273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2059273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2060273d9f13SBarry Smith } 2061a30f8f8cSSatish Balay PetscFunctionReturn(0); 2062a30f8f8cSSatish Balay } 2063a30f8f8cSSatish Balay 2064a30f8f8cSSatish Balay 20654a2ae208SSatish Balay #undef __FUNCT__ 20664a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20676849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2068a30f8f8cSSatish Balay { 2069a30f8f8cSSatish Balay Mat mat; 2070a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2071dfbe8321SBarry Smith PetscErrorCode ierr; 2072*1302d50aSBarry Smith PetscInt len=0,nt,bs=oldmat->bs,mbs=oldmat->mbs; 2073387bc808SHong Zhang PetscScalar *array; 2074a30f8f8cSSatish Balay 2075a30f8f8cSSatish Balay PetscFunctionBegin; 2076a30f8f8cSSatish Balay *newmat = 0; 2077b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2078be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20791d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2080e1b6402fSHong Zhang 208182327fa8SHong Zhang mat->factor = matin->factor; 2082273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 208382327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20847fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20857fff6886SHong Zhang 2086b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2087a30f8f8cSSatish Balay a->bs = oldmat->bs; 2088a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2089a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2090a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2091a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2092a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2093a30f8f8cSSatish Balay 2094a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2095a30f8f8cSSatish Balay a->rend = oldmat->rend; 2096a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2097a30f8f8cSSatish Balay a->cend = oldmat->cend; 2098a30f8f8cSSatish Balay a->size = oldmat->size; 2099a30f8f8cSSatish Balay a->rank = oldmat->rank; 2100a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2101a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2102a30f8f8cSSatish Balay a->rowindices = 0; 2103a30f8f8cSSatish Balay a->rowvalues = 0; 2104a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2105a30f8f8cSSatish Balay a->barray = 0; 2106a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2107a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2108a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2109a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2110a30f8f8cSSatish Balay 2111a30f8f8cSSatish Balay /* hash table stuff */ 2112a30f8f8cSSatish Balay a->ht = 0; 2113a30f8f8cSSatish Balay a->hd = 0; 2114a30f8f8cSSatish Balay a->ht_size = 0; 2115a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2116a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2117a30f8f8cSSatish Balay a->ht_total_ct = 0; 2118a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2119a30f8f8cSSatish Balay 2120*1302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2121a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2122a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2123a30f8f8cSSatish Balay if (oldmat->colmap) { 2124a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2125a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2126a30f8f8cSSatish Balay #else 2127*1302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 2128*1302d50aSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt)); 2129*1302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2130a30f8f8cSSatish Balay #endif 2131a30f8f8cSSatish Balay } else a->colmap = 0; 2132387bc808SHong Zhang 2133a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2134*1302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 2135*1302d50aSBarry Smith PetscLogObjectMemory(mat,len*sizeof(PetscInt)); 2136*1302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2137a30f8f8cSSatish Balay } else a->garray = 0; 2138a30f8f8cSSatish Balay 2139a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2140b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2141a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2142b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 214382327fa8SHong Zhang 214482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 2145387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 214682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 2147387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2148387bc808SHong Zhang 2149387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21501ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2151387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2152387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21531ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21541ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2155387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21561ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 2157387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 2158387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2159387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0b); 2160387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1a); 2161387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1b); 2162387bc808SHong Zhang 2163387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2164387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2165387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 2166387bc808SHong Zhang PetscLogObjectParent(mat,a->sMvctx); 216782327fa8SHong Zhang 2168a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2169b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2170a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2171b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2172b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2173a30f8f8cSSatish Balay *newmat = mat; 2174a30f8f8cSSatish Balay PetscFunctionReturn(0); 2175a30f8f8cSSatish Balay } 2176a30f8f8cSSatish Balay 2177a30f8f8cSSatish Balay #include "petscsys.h" 2178a30f8f8cSSatish Balay 21794a2ae208SSatish Balay #undef __FUNCT__ 21804a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2181dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2182a30f8f8cSSatish Balay { 2183a30f8f8cSSatish Balay Mat A; 21846849ba73SBarry Smith PetscErrorCode ierr; 2185*1302d50aSBarry Smith PetscInt i,nz,j,rstart,rend,fd; 218687828ca2SBarry Smith PetscScalar *vals,*buf; 2187a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2188a30f8f8cSSatish Balay MPI_Status status; 2189*1302d50aSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 2190*1302d50aSBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2191*1302d50aSBarry Smith PetscInt *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2192*1302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 2193*1302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2194*1302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 2195a30f8f8cSSatish Balay 2196a30f8f8cSSatish Balay PetscFunctionBegin; 2197b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2198a30f8f8cSSatish Balay 2199a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2200a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2201a30f8f8cSSatish Balay if (!rank) { 2202b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2203a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2204552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2205a30f8f8cSSatish Balay if (header[3] < 0) { 220629bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2207a30f8f8cSSatish Balay } 2208a30f8f8cSSatish Balay } 2209a30f8f8cSSatish Balay 2210a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2211a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2212a30f8f8cSSatish Balay 221329bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2214a30f8f8cSSatish Balay 2215a30f8f8cSSatish Balay /* 2216a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2217a30f8f8cSSatish Balay divisible by the blocksize 2218a30f8f8cSSatish Balay */ 2219a30f8f8cSSatish Balay Mbs = M/bs; 2220a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2221a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2222a30f8f8cSSatish Balay else Mbs++; 2223a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2224b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2225a30f8f8cSSatish Balay } 2226a30f8f8cSSatish Balay 2227a30f8f8cSSatish Balay /* determine ownership of all rows */ 2228a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2229a30f8f8cSSatish Balay m = mbs*bs; 2230*1302d50aSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay browners = rowners + size + 1; 2232a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2233a30f8f8cSSatish Balay rowners[0] = 0; 2234a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2235a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2236a30f8f8cSSatish Balay rstart = rowners[rank]; 2237a30f8f8cSSatish Balay rend = rowners[rank+1]; 2238a30f8f8cSSatish Balay 2239a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 2240*1302d50aSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 2241a30f8f8cSSatish Balay if (!rank) { 2242*1302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2243a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2244a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2245*1302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&sndcounts);CHKERRQ(ierr); 2246a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2247a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2248a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2249a30f8f8cSSatish Balay } else { 2250a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay } 2252a30f8f8cSSatish Balay 22530222edb1SHong Zhang if (!rank) { /* procs[0] */ 2254a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 2255*1302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 2256*1302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2257a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2258a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2259a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2260a30f8f8cSSatish Balay } 2261a30f8f8cSSatish Balay } 2262a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay 2264a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2265a30f8f8cSSatish Balay maxnz = 0; 2266a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2267a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2268a30f8f8cSSatish Balay } 2269*1302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2270a30f8f8cSSatish Balay 2271a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2272a30f8f8cSSatish Balay nz = procsnz[0]; 2273*1302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2274a30f8f8cSSatish Balay mycols = ibuf; 2275a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2276a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2277a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2278a30f8f8cSSatish Balay 2279a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2280a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2281a30f8f8cSSatish Balay nz = procsnz[i]; 2282a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2283a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2284a30f8f8cSSatish Balay } 2285a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2286a30f8f8cSSatish Balay if (size != 1) { 2287a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2288a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2289a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2290a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2291a30f8f8cSSatish Balay } 2292a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22930222edb1SHong Zhang } else { /* procs[i], i>0 */ 2294a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2295a30f8f8cSSatish Balay nz = 0; 2296a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2297a30f8f8cSSatish Balay nz += locrowlens[i]; 2298a30f8f8cSSatish Balay } 2299*1302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2300a30f8f8cSSatish Balay mycols = ibuf; 2301a30f8f8cSSatish Balay /* receive message of column indices*/ 2302a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2303a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 230429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2305a30f8f8cSSatish Balay } 2306a30f8f8cSSatish Balay 2307a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2308*1302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2309a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 2310*1302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 2311*1302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2312a30f8f8cSSatish Balay masked1 = mask + Mbs; 2313a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2314a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2315a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2316a30f8f8cSSatish Balay dcount = 0; 2317a30f8f8cSSatish Balay odcount = 0; 2318a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2319a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2320a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23210222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2322a30f8f8cSSatish Balay if (!mask[tmp]) { 2323a30f8f8cSSatish Balay mask[tmp] = 1; 23240222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23250222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2326a30f8f8cSSatish Balay } 2327a30f8f8cSSatish Balay } 2328a30f8f8cSSatish Balay rowcount++; 2329a30f8f8cSSatish Balay } 2330a30f8f8cSSatish Balay 23310222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23320222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2333a30f8f8cSSatish Balay 2334a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2335a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2336a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2337a30f8f8cSSatish Balay } 2338a30f8f8cSSatish Balay 2339a30f8f8cSSatish Balay /* create our matrix */ 234022191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 234122191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 234222191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2343273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2344a30f8f8cSSatish Balay 2345a30f8f8cSSatish Balay if (!rank) { 234687828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2347a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2348a30f8f8cSSatish Balay nz = procsnz[0]; 2349a30f8f8cSSatish Balay vals = buf; 2350a30f8f8cSSatish Balay mycols = ibuf; 2351a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2352a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2353a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2354a30f8f8cSSatish Balay 2355a30f8f8cSSatish Balay /* insert into matrix */ 2356a30f8f8cSSatish Balay jj = rstart*bs; 2357a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23587e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2359a30f8f8cSSatish Balay mycols += locrowlens[i]; 2360a30f8f8cSSatish Balay vals += locrowlens[i]; 2361a30f8f8cSSatish Balay jj++; 2362a30f8f8cSSatish Balay } 23637e06b45fSHong Zhang 2364a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2365a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2366a30f8f8cSSatish Balay nz = procsnz[i]; 2367a30f8f8cSSatish Balay vals = buf; 2368a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2369a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2370a30f8f8cSSatish Balay } 2371a30f8f8cSSatish Balay /* the last proc */ 2372a30f8f8cSSatish Balay if (size != 1){ 2373a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2374a30f8f8cSSatish Balay vals = buf; 2375a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2376a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2377a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2378a30f8f8cSSatish Balay } 2379a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23807e06b45fSHong Zhang 2381a30f8f8cSSatish Balay } else { 2382a30f8f8cSSatish Balay /* receive numeric values */ 238387828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2384a30f8f8cSSatish Balay 2385a30f8f8cSSatish Balay /* receive message of values*/ 2386a30f8f8cSSatish Balay vals = buf; 2387a30f8f8cSSatish Balay mycols = ibuf; 2388a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2389a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 239029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2391a30f8f8cSSatish Balay 2392a30f8f8cSSatish Balay /* insert into matrix */ 2393a30f8f8cSSatish Balay jj = rstart*bs; 2394a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2395a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2396a30f8f8cSSatish Balay mycols += locrowlens[i]; 2397a30f8f8cSSatish Balay vals += locrowlens[i]; 2398a30f8f8cSSatish Balay jj++; 2399a30f8f8cSSatish Balay } 2400a30f8f8cSSatish Balay } 24017e06b45fSHong Zhang 2402a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2403a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2404a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2405a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2406a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2407a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2408a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2409a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 241022191285SKris Buschelman *newmat = A; 2411a30f8f8cSSatish Balay PetscFunctionReturn(0); 2412a30f8f8cSSatish Balay } 2413a30f8f8cSSatish Balay 24144a2ae208SSatish Balay #undef __FUNCT__ 24154a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2416a30f8f8cSSatish Balay /*@ 2417a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2418a30f8f8cSSatish Balay 2419a30f8f8cSSatish Balay Input Parameters: 2420a30f8f8cSSatish Balay . mat - the matrix 2421a30f8f8cSSatish Balay . fact - factor 2422a30f8f8cSSatish Balay 2423a30f8f8cSSatish Balay Collective on Mat 2424a30f8f8cSSatish Balay 2425a30f8f8cSSatish Balay Level: advanced 2426a30f8f8cSSatish Balay 2427a30f8f8cSSatish Balay Notes: 2428a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2429a30f8f8cSSatish Balay 2430a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2431a30f8f8cSSatish Balay 2432a30f8f8cSSatish Balay .seealso: MatSetOption() 2433a30f8f8cSSatish Balay @*/ 2434dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2435a30f8f8cSSatish Balay { 2436a30f8f8cSSatish Balay PetscFunctionBegin; 2437*1302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 243896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2439a30f8f8cSSatish Balay } 244024d5174aSHong Zhang 24414a2ae208SSatish Balay #undef __FUNCT__ 24424a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2443dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 244424d5174aSHong Zhang { 244524d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2446f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2447ca54ac64SHong Zhang PetscReal atmp; 244887828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2449dfbe8321SBarry Smith PetscErrorCode ierr; 2450*1302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2451*1302d50aSBarry Smith PetscMPIInt rank,size; 2452*1302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 245387828ca2SBarry Smith PetscScalar *va; 24548a1c53f2SBarry Smith MatScalar *ba; 2455f4c0e9e4SHong Zhang MPI_Status stat; 245624d5174aSHong Zhang 245724d5174aSHong Zhang PetscFunctionBegin; 2458d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24591ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2460f4c0e9e4SHong Zhang 246156faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 246256faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2463f4c0e9e4SHong Zhang 2464f4c0e9e4SHong Zhang bs = a->bs; 2465f4c0e9e4SHong Zhang mbs = a->mbs; 2466f4c0e9e4SHong Zhang Mbs = a->Mbs; 2467f4c0e9e4SHong Zhang ba = b->a; 2468f4c0e9e4SHong Zhang bi = b->i; 2469f4c0e9e4SHong Zhang bj = b->j; 2470ca54ac64SHong Zhang /* 247156faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 247256faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2473ca54ac64SHong Zhang */ 2474f4c0e9e4SHong Zhang 2475f4c0e9e4SHong Zhang /* find ownerships */ 2476f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2477f4c0e9e4SHong Zhang /* 247804d41228SHong Zhang if (!rank){ 247904d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2480f4c0e9e4SHong Zhang } 2481f4c0e9e4SHong Zhang */ 2482f4c0e9e4SHong Zhang 2483f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 248482502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2485ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2486f4c0e9e4SHong Zhang 2487f4c0e9e4SHong Zhang /* row_max for B */ 2488b8475685SHong Zhang if (rank != size-1){ 2489f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2490f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2491f4c0e9e4SHong Zhang brow = bs*i; 2492f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2493f4c0e9e4SHong Zhang bcol = bs*(*bj); 2494f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2495ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 249604d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2497ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2498f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2499f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2500ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2501f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2502ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2503f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2504f4c0e9e4SHong Zhang } 2505f4c0e9e4SHong Zhang } 2506f4c0e9e4SHong Zhang bj++; 2507f4c0e9e4SHong Zhang } 2508f4c0e9e4SHong Zhang } 250904d41228SHong Zhang /* 251004d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 251104d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 251204d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 251304d41228SHong Zhang */ 2514f4c0e9e4SHong Zhang 2515f4c0e9e4SHong Zhang /* send values to its owners */ 2516f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2517f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2518ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 251956faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2520ca54ac64SHong Zhang /* 252156faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 252256faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2523ca54ac64SHong Zhang */ 2524ca54ac64SHong Zhang } 2525f4c0e9e4SHong Zhang } 2526f4c0e9e4SHong Zhang 2527f4c0e9e4SHong Zhang /* receive values */ 2528ca54ac64SHong Zhang if (rank){ 2529f4c0e9e4SHong Zhang rvalues = work; 2530ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2531f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 253256faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2533f4c0e9e4SHong Zhang /* process values */ 2534f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2535ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2536f4c0e9e4SHong Zhang } 2537ca54ac64SHong Zhang /* 253856faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 253956faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2540ca54ac64SHong Zhang */ 2541f4c0e9e4SHong Zhang } 2542ca54ac64SHong Zhang } 2543f4c0e9e4SHong Zhang 25441ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2545ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 254624d5174aSHong Zhang PetscFunctionReturn(0); 254724d5174aSHong Zhang } 25482798e883SHong Zhang 25492798e883SHong Zhang #undef __FUNCT__ 25502798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2551*1302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25522798e883SHong Zhang { 25532798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2554dfbe8321SBarry Smith PetscErrorCode ierr; 2555*1302d50aSBarry Smith PetscInt mbs=mat->mbs,bs=mat->bs; 2556ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2557ffe4fb16SHong Zhang Vec bb1; 2558ffe4fb16SHong Zhang 2559ffe4fb16SHong Zhang PetscFunctionBegin; 2560ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2561ffe4fb16SHong Zhang if (bs > 1) 2562ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2563ffe4fb16SHong Zhang 2564ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2565ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2566ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2567ffe4fb16SHong Zhang its--; 2568ffe4fb16SHong Zhang } 2569ffe4fb16SHong Zhang 2570ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2571ffe4fb16SHong Zhang while (its--){ 2572ffe4fb16SHong Zhang 2573ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2574ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2575ffe4fb16SHong Zhang 2576ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25771ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25781ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2579ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25801ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2581ffe4fb16SHong Zhang 2582ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2583ffe4fb16SHong Zhang 2584ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25851ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25861ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2587ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25881ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2589ffe4fb16SHong Zhang 2590ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2591ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2592ffe4fb16SHong Zhang 2593ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25941ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25951ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2596ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2597ffe4fb16SHong Zhang 2598ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2599ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2600ffe4fb16SHong Zhang 2601ffe4fb16SHong Zhang /* local diagonal sweep */ 2602ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2603ffe4fb16SHong Zhang } 2604ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2605ffe4fb16SHong Zhang } else { 2606ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2607ffe4fb16SHong Zhang } 2608ffe4fb16SHong Zhang PetscFunctionReturn(0); 2609ffe4fb16SHong Zhang } 2610ffe4fb16SHong Zhang 2611ffe4fb16SHong Zhang #undef __FUNCT__ 2612ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2613*1302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2614ffe4fb16SHong Zhang { 2615ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2616dfbe8321SBarry Smith PetscErrorCode ierr; 2617d05c616dSSatish Balay PetscScalar mone=-1.0; 26182798e883SHong Zhang Vec lvec1,bb1; 26192798e883SHong Zhang 26202798e883SHong Zhang PetscFunctionBegin; 262191723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 26222798e883SHong Zhang if (mat->bs > 1) 26232798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26242798e883SHong Zhang 2625c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 26262798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2627bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26282798e883SHong Zhang its--; 26292798e883SHong Zhang } 26302798e883SHong Zhang 26312798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26322798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26332798e883SHong Zhang while (its--){ 26342798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 26352798e883SHong Zhang 26362798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26372798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 26382798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 26392798e883SHong Zhang 26402798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 26412798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 26422798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26432798e883SHong Zhang 26442798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 26452798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 26462798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26472798e883SHong Zhang 26482798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26492798e883SHong Zhang 2650c14dc6b6SHong Zhang /* diagonal sweep */ 2651bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26522798e883SHong Zhang } 26532798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26542798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2655c14dc6b6SHong Zhang } else { 2656c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2657c14dc6b6SHong Zhang } 26582798e883SHong Zhang PetscFunctionReturn(0); 26592798e883SHong Zhang } 26602798e883SHong Zhang 2661