xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 1575c14d35e6562ef67dce5e5a97f4a0489f95e5)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
86214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
104a2ae208SSatish Balay #undef __FUNCT__
114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
127087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
13a30f8f8cSSatish Balay {
14f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
15dfbe8321SBarry Smith   PetscErrorCode ierr;
16a30f8f8cSSatish Balay 
17a30f8f8cSSatish Balay   PetscFunctionBegin;
18a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
19a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
20a30f8f8cSSatish Balay   PetscFunctionReturn(0);
21a30f8f8cSSatish Balay }
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
36d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
37a30f8f8cSSatish Balay   { \
38a30f8f8cSSatish Balay  \
39a30f8f8cSSatish Balay     brow = row/bs;  \
40a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
41a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
42a30f8f8cSSatish Balay     bcol = col/bs; \
43a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
44a30f8f8cSSatish Balay     low  = 0; high = nrow; \
45a30f8f8cSSatish Balay     while (high-low > 3) { \
46a30f8f8cSSatish Balay       t = (low+high)/2; \
47a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
48a30f8f8cSSatish Balay       else              low  = t; \
49a30f8f8cSSatish Balay     } \
50a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
51a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
52a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
53a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
54a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
55a30f8f8cSSatish Balay         else                    *bap  = value;  \
56a30f8f8cSSatish Balay         goto a_noinsert; \
57a30f8f8cSSatish Balay       } \
58a30f8f8cSSatish Balay     } \
59a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
60d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
61fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
62a30f8f8cSSatish Balay     N = nrow++ - 1;  \
63a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
64a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
65a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
66a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
67a30f8f8cSSatish Balay     } \
68a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
69a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
70a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
71e56f5c9eSBarry Smith     A->nonzerostate++;\
72a30f8f8cSSatish Balay a_noinsert:; \
73a30f8f8cSSatish Balay     ailen[brow] = nrow; \
74a30f8f8cSSatish Balay   }
75e5e170daSBarry Smith 
76d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
77a30f8f8cSSatish Balay   { \
78a30f8f8cSSatish Balay     brow = row/bs;  \
79a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
80a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
81a30f8f8cSSatish Balay     bcol = col/bs; \
82a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
83a30f8f8cSSatish Balay     low  = 0; high = nrow; \
84a30f8f8cSSatish Balay     while (high-low > 3) { \
85a30f8f8cSSatish Balay       t = (low+high)/2; \
86a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
87a30f8f8cSSatish Balay       else              low  = t; \
88a30f8f8cSSatish Balay     } \
89a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
90a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
91a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
92a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
93a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
94a30f8f8cSSatish Balay         else                    *bap  = value;  \
95a30f8f8cSSatish Balay         goto b_noinsert; \
96a30f8f8cSSatish Balay       } \
97a30f8f8cSSatish Balay     } \
98a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
99d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
100fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
101a30f8f8cSSatish Balay     N = nrow++ - 1;  \
102a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
103a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
104a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
105a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
106a30f8f8cSSatish Balay     } \
107a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
108a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
109a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
110e56f5c9eSBarry Smith     B->nonzerostate++;\
111a30f8f8cSSatish Balay b_noinsert:; \
112a30f8f8cSSatish Balay     bilen[brow] = nrow; \
113a30f8f8cSSatish Balay   }
114a30f8f8cSSatish Balay 
115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
116a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
117a30f8f8cSSatish Balay */
1184a2ae208SSatish Balay #undef __FUNCT__
119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
121a30f8f8cSSatish Balay {
122a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
123a30f8f8cSSatish Balay   MatScalar      value;
124ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
125dfbe8321SBarry Smith   PetscErrorCode ierr;
1261302d50aSBarry Smith   PetscInt       i,j,row,col;
127d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
128d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
129d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   /* Some Variables required in the macro */
132a30f8f8cSSatish Balay   Mat          A     = baij->A;
133a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1341302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
135a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
136a30f8f8cSSatish Balay 
137a30f8f8cSSatish Balay   Mat         B     = baij->B;
138a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1391302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
140a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
141a30f8f8cSSatish Balay 
1421302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1431302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
144a30f8f8cSSatish Balay   MatScalar *ap,*bap;
145a30f8f8cSSatish Balay 
146a30f8f8cSSatish Balay   /* for stash */
1470298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1480298fd71SBarry Smith   MatScalar *v_loc = NULL;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   PetscFunctionBegin;
151a30f8f8cSSatish Balay   if (!baij->donotstash) {
15259ffdab8SBarry Smith     if (n > baij->n_loc) {
15359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
15459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
155785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
156785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15726fbe8dcSKarl Rupp 
15859ffdab8SBarry Smith       baij->n_loc = n;
15959ffdab8SBarry Smith     }
16059ffdab8SBarry Smith     in_loc = baij->in_loc;
16159ffdab8SBarry Smith     v_loc  = baij->v_loc;
162a30f8f8cSSatish Balay   }
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
165a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
167e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
168a30f8f8cSSatish Balay #endif
169a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
170a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
171a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
17201b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
17301b2bd88SHong Zhang           if (a->ignore_ltriangular) {
17401b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
17526fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17601b2bd88SHong Zhang         }
177a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
178a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
179a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
180a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
181db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
182db4deed7SKarl Rupp           else             value = v[i+j*m];
183d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
184a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
185a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
187cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
188a30f8f8cSSatish Balay #endif
189a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
190a30f8f8cSSatish Balay           if (mat->was_assembled) {
191a30f8f8cSSatish Balay             if (!baij->colmap) {
192ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
193a30f8f8cSSatish Balay             }
194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
195a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19671730473SSatish Balay             col  = col - 1;
197a30f8f8cSSatish Balay #else
19871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
199a30f8f8cSSatish Balay #endif
200a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
201ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
202a30f8f8cSSatish Balay               col  =  in[j];
203a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
204a30f8f8cSSatish Balay               B    = baij->B;
205a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
206a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
207a30f8f8cSSatish Balay               ba   = b->a;
20871730473SSatish Balay             } else col += in[j]%bs;
209a30f8f8cSSatish Balay           } else col = in[j];
210db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
211db4deed7SKarl Rupp           else             value = v[i+j*m];
212d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
213a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
214a30f8f8cSSatish Balay         }
215a30f8f8cSSatish Balay       }
216a30f8f8cSSatish Balay     } else {  /* off processor entry */
2174cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
218a30f8f8cSSatish Balay       if (!baij->donotstash) {
2195080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
220a30f8f8cSSatish Balay         n_loc          = 0;
221a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
222f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
223a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
224a30f8f8cSSatish Balay           if (roworiented) {
225a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
226a30f8f8cSSatish Balay           } else {
227a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
228a30f8f8cSSatish Balay           }
229a30f8f8cSSatish Balay           n_loc++;
230a30f8f8cSSatish Balay         }
231b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     }
234a30f8f8cSSatish Balay   }
235a30f8f8cSSatish Balay   PetscFunctionReturn(0);
236a30f8f8cSSatish Balay }
237a30f8f8cSSatish Balay 
2384a2ae208SSatish Balay #undef __FUNCT__
23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined"
24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
24136bd2089SBarry Smith {
24236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
24336bd2089SBarry Smith   PetscErrorCode    ierr;
24436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
24536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
24636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
24736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
24836bd2089SBarry Smith   const PetscScalar *value     = v;
24936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
25036bd2089SBarry Smith 
25136bd2089SBarry Smith   PetscFunctionBegin;
25236bd2089SBarry Smith   if (col < row) {
25336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
25436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
25536bd2089SBarry Smith   }
25636bd2089SBarry Smith   rp   = aj + ai[row];
25736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
25836bd2089SBarry Smith   rmax = imax[row];
25936bd2089SBarry Smith   nrow = ailen[row];
26036bd2089SBarry Smith   value = v;
26136bd2089SBarry Smith   low   = 0;
26236bd2089SBarry Smith   high  = nrow;
26336bd2089SBarry Smith 
26436bd2089SBarry Smith   while (high-low > 7) {
26536bd2089SBarry Smith     t = (low+high)/2;
26636bd2089SBarry Smith     if (rp[t] > col) high = t;
26736bd2089SBarry Smith     else             low  = t;
26836bd2089SBarry Smith   }
26936bd2089SBarry Smith   for (i=low; i<high; i++) {
27036bd2089SBarry Smith     if (rp[i] > col) break;
27136bd2089SBarry Smith     if (rp[i] == col) {
27236bd2089SBarry Smith       bap = ap +  bs2*i;
27336bd2089SBarry Smith       if (roworiented) {
27436bd2089SBarry Smith         if (is == ADD_VALUES) {
27536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
27636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
27736bd2089SBarry Smith               bap[jj] += *value++;
27836bd2089SBarry Smith             }
27936bd2089SBarry Smith           }
28036bd2089SBarry Smith         } else {
28136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
28236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
28336bd2089SBarry Smith               bap[jj] = *value++;
28436bd2089SBarry Smith             }
28536bd2089SBarry Smith           }
28636bd2089SBarry Smith         }
28736bd2089SBarry Smith       } else {
28836bd2089SBarry Smith         if (is == ADD_VALUES) {
28936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29136bd2089SBarry Smith               *bap++ += *value++;
29236bd2089SBarry Smith             }
29336bd2089SBarry Smith           }
29436bd2089SBarry Smith         } else {
29536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29736bd2089SBarry Smith               *bap++  = *value++;
29836bd2089SBarry Smith             }
29936bd2089SBarry Smith           }
30036bd2089SBarry Smith         }
30136bd2089SBarry Smith       }
30236bd2089SBarry Smith       goto noinsert2;
30336bd2089SBarry Smith     }
30436bd2089SBarry Smith   }
30536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
30636bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
30736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
30836bd2089SBarry Smith   N = nrow++ - 1; high++;
30936bd2089SBarry Smith   /* shift up all the later entries in this row */
31036bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
31136bd2089SBarry Smith     rp[ii+1] = rp[ii];
31236bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
31336bd2089SBarry Smith   }
31436bd2089SBarry Smith   if (N >= i) {
31536bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
31636bd2089SBarry Smith   }
31736bd2089SBarry Smith   rp[i] = col;
31836bd2089SBarry Smith   bap   = ap +  bs2*i;
31936bd2089SBarry Smith   if (roworiented) {
32036bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32136bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
32236bd2089SBarry Smith         bap[jj] = *value++;
32336bd2089SBarry Smith       }
32436bd2089SBarry Smith     }
32536bd2089SBarry Smith   } else {
32636bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32736bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
32836bd2089SBarry Smith         *bap++ = *value++;
32936bd2089SBarry Smith       }
33036bd2089SBarry Smith     }
33136bd2089SBarry Smith   }
33236bd2089SBarry Smith   noinsert2:;
33336bd2089SBarry Smith   ailen[row] = nrow;
33436bd2089SBarry Smith   PetscFunctionReturn(0);
33536bd2089SBarry Smith }
33636bd2089SBarry Smith 
33736bd2089SBarry Smith #undef __FUNCT__
33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined"
33936bd2089SBarry Smith /*
34036bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
34136bd2089SBarry Smith */
34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34336bd2089SBarry Smith {
34436bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
34536bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34636bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
34736bd2089SBarry Smith   PetscErrorCode    ierr;
34836bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34936bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
35036bd2089SBarry Smith   const PetscScalar *value     = v;
35136bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35236bd2089SBarry Smith 
35336bd2089SBarry Smith   PetscFunctionBegin;
35436bd2089SBarry Smith   rp   = aj + ai[row];
35536bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35636bd2089SBarry Smith   rmax = imax[row];
35736bd2089SBarry Smith   nrow = ailen[row];
35836bd2089SBarry Smith   low  = 0;
35936bd2089SBarry Smith   high = nrow;
36036bd2089SBarry Smith   value = v;
36136bd2089SBarry Smith   while (high-low > 7) {
36236bd2089SBarry Smith     t = (low+high)/2;
36336bd2089SBarry Smith     if (rp[t] > col) high = t;
36436bd2089SBarry Smith     else             low  = t;
36536bd2089SBarry Smith   }
36636bd2089SBarry Smith   for (i=low; i<high; i++) {
36736bd2089SBarry Smith     if (rp[i] > col) break;
36836bd2089SBarry Smith     if (rp[i] == col) {
36936bd2089SBarry Smith       bap = ap +  bs2*i;
37036bd2089SBarry Smith       if (roworiented) {
37136bd2089SBarry Smith         if (is == ADD_VALUES) {
37236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37336bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37436bd2089SBarry Smith               bap[jj] += *value++;
37536bd2089SBarry Smith             }
37636bd2089SBarry Smith           }
37736bd2089SBarry Smith         } else {
37836bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37936bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38036bd2089SBarry Smith               bap[jj] = *value++;
38136bd2089SBarry Smith             }
38236bd2089SBarry Smith           }
38336bd2089SBarry Smith         }
38436bd2089SBarry Smith       } else {
38536bd2089SBarry Smith         if (is == ADD_VALUES) {
38636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
38736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38836bd2089SBarry Smith               bap[jj] += value[jj];
38936bd2089SBarry Smith             }
39036bd2089SBarry Smith             bap += bs;
39136bd2089SBarry Smith           }
39236bd2089SBarry Smith         } else {
39336bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
39436bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39536bd2089SBarry Smith               bap[jj]  = value[jj];
39636bd2089SBarry Smith             }
39736bd2089SBarry Smith             bap += bs;
39836bd2089SBarry Smith           }
39936bd2089SBarry Smith         }
40036bd2089SBarry Smith       }
40136bd2089SBarry Smith       goto noinsert2;
40236bd2089SBarry Smith     }
40336bd2089SBarry Smith   }
40436bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
40536bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
40636bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40736bd2089SBarry Smith   N = nrow++ - 1; high++;
40836bd2089SBarry Smith   /* shift up all the later entries in this row */
40936bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
41036bd2089SBarry Smith     rp[ii+1] = rp[ii];
41136bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
41236bd2089SBarry Smith   }
41336bd2089SBarry Smith   if (N >= i) {
41436bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
41536bd2089SBarry Smith   }
41636bd2089SBarry Smith   rp[i] = col;
41736bd2089SBarry Smith   bap   = ap +  bs2*i;
41836bd2089SBarry Smith   if (roworiented) {
41936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
42136bd2089SBarry Smith         bap[jj] = *value++;
42236bd2089SBarry Smith       }
42336bd2089SBarry Smith     }
42436bd2089SBarry Smith   } else {
42536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42736bd2089SBarry Smith         *bap++ = *value++;
42836bd2089SBarry Smith       }
42936bd2089SBarry Smith     }
43036bd2089SBarry Smith   }
43136bd2089SBarry Smith   noinsert2:;
43236bd2089SBarry Smith   ailen[row] = nrow;
43336bd2089SBarry Smith   PetscFunctionReturn(0);
43436bd2089SBarry Smith }
43536bd2089SBarry Smith 
43636bd2089SBarry Smith #undef __FUNCT__
437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
43836bd2089SBarry Smith /*
43936bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
44036bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
44136bd2089SBarry Smith */
442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
443a30f8f8cSSatish Balay {
4440880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
445f15d580aSBarry Smith   const MatScalar *value;
446f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
447ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
448dfbe8321SBarry Smith   PetscErrorCode  ierr;
449899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
450899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
451d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
4520880e062SHong Zhang 
453a30f8f8cSSatish Balay   PetscFunctionBegin;
4540880e062SHong Zhang   if (!barray) {
455785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
4560880e062SHong Zhang     baij->barray = barray;
4570880e062SHong Zhang   }
4580880e062SHong Zhang 
4590880e062SHong Zhang   if (roworiented) {
4600880e062SHong Zhang     stepval = (n-1)*bs;
4610880e062SHong Zhang   } else {
4620880e062SHong Zhang     stepval = (m-1)*bs;
4630880e062SHong Zhang   }
4640880e062SHong Zhang   for (i=0; i<m; i++) {
4650880e062SHong Zhang     if (im[i] < 0) continue;
4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
467bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
4680880e062SHong Zhang #endif
4690880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4700880e062SHong Zhang       row = im[i] - rstart;
4710880e062SHong Zhang       for (j=0; j<n; j++) {
472f3f98c53SJed Brown         if (im[i] > in[j]) {
473f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
474e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
475f3f98c53SJed Brown         }
4760880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4770880e062SHong Zhang         if ((roworiented) && (n == 1)) {
478f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4790880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
480f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4810880e062SHong Zhang         } else { /* Here a copy is required */
4820880e062SHong Zhang           if (roworiented) {
4830880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4840880e062SHong Zhang           } else {
4850880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4860880e062SHong Zhang           }
4870880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4880880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4890880e062SHong Zhang               *barray++ = *value++;
4900880e062SHong Zhang             }
4910880e062SHong Zhang           }
4920880e062SHong Zhang           barray -=bs2;
4930880e062SHong Zhang         }
4940880e062SHong Zhang 
4950880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
4960880e062SHong Zhang           col  = in[j] - cstart;
49736bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
49826fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
500bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5010880e062SHong Zhang #endif
5020880e062SHong Zhang         else {
5030880e062SHong Zhang           if (mat->was_assembled) {
5040880e062SHong Zhang             if (!baij->colmap) {
505ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5060880e062SHong Zhang             }
5070880e062SHong Zhang 
5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5101302d50aSBarry Smith             { PetscInt data;
5110880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
512e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5130880e062SHong Zhang             }
5140880e062SHong Zhang #else
515e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5160880e062SHong Zhang #endif
5170880e062SHong Zhang #endif
5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5190880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5200880e062SHong Zhang             col  = (col - 1)/bs;
5210880e062SHong Zhang #else
5220880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5230880e062SHong Zhang #endif
5240880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
525ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5260880e062SHong Zhang               col  = in[j];
5270880e062SHong Zhang             }
52826fbe8dcSKarl Rupp           } else col = in[j];
52936bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
5300880e062SHong Zhang         }
5310880e062SHong Zhang       }
5320880e062SHong Zhang     } else {
533bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
5340880e062SHong Zhang       if (!baij->donotstash) {
5350880e062SHong Zhang         if (roworiented) {
5360880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5370880e062SHong Zhang         } else {
5380880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5390880e062SHong Zhang         }
5400880e062SHong Zhang       }
5410880e062SHong Zhang     }
5420880e062SHong Zhang   }
5430880e062SHong Zhang   PetscFunctionReturn(0);
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5516849ba73SBarry Smith   PetscErrorCode ierr;
552d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
553d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
557e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
558e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
562e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
563e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
565a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data--;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
585a30f8f8cSSatish Balay   }
586a30f8f8cSSatish Balay   PetscFunctionReturn(0);
587a30f8f8cSSatish Balay }
588a30f8f8cSSatish Balay 
5894a2ae208SSatish Balay #undef __FUNCT__
5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
592a30f8f8cSSatish Balay {
593a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
594dfbe8321SBarry Smith   PetscErrorCode ierr;
595a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
596a30f8f8cSSatish Balay 
597a30f8f8cSSatish Balay   PetscFunctionBegin;
598a30f8f8cSSatish Balay   if (baij->size == 1) {
599a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
600a30f8f8cSSatish Balay   } else {
601a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
602785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
603a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
604a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
605a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
606a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
607ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6088f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
609a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6100b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6110b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6120b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6130b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
614899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
615d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6160b8dc8d2SHong Zhang       MatScalar    *v;
6170b8dc8d2SHong Zhang 
618dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
619d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6200b8dc8d2SHong Zhang       /* Amat */
6210b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6220b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6230b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6240b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6250b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6260b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6270b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6280b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6290b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6300b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6310b8dc8d2SHong Zhang               /* non-diagonal block */
6320b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
6330b8dc8d2SHong Zhang             }
6340b8dc8d2SHong Zhang           }
6350b8dc8d2SHong Zhang         }
6360b8dc8d2SHong Zhang       }
6370b8dc8d2SHong Zhang       /* Bmat */
6380b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
6390b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6400b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6410b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
6420b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6430b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
6440b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6450b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6460b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6470b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6480b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
6490b8dc8d2SHong Zhang             }
6500b8dc8d2SHong Zhang           }
6510b8dc8d2SHong Zhang         }
6520b8dc8d2SHong Zhang       }
653ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6540b8dc8d2SHong Zhang       *norm = 0.0;
655d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
6560b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
6570b8dc8d2SHong Zhang       }
65874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
659f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
660a30f8f8cSSatish Balay   }
661a30f8f8cSSatish Balay   PetscFunctionReturn(0);
662a30f8f8cSSatish Balay }
663a30f8f8cSSatish Balay 
6644a2ae208SSatish Balay #undef __FUNCT__
6654a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
666dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
667a30f8f8cSSatish Balay {
668a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
669dfbe8321SBarry Smith   PetscErrorCode ierr;
6701302d50aSBarry Smith   PetscInt       nstash,reallocs;
671a30f8f8cSSatish Balay   InsertMode     addv;
672a30f8f8cSSatish Balay 
673a30f8f8cSSatish Balay   PetscFunctionBegin;
67426fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
677ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
678ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
679a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
680a30f8f8cSSatish Balay 
681d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
6821e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
683a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6841e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
685a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6861e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
687a30f8f8cSSatish Balay   PetscFunctionReturn(0);
688a30f8f8cSSatish Balay }
689a30f8f8cSSatish Balay 
6904a2ae208SSatish Balay #undef __FUNCT__
6914a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
692dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
693a30f8f8cSSatish Balay {
694a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
695a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
6966849ba73SBarry Smith   PetscErrorCode ierr;
69713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
698e44c0bd4SBarry Smith   PetscInt       *row,*col;
699ace3abfcSBarry Smith   PetscBool      other_disassembled;
70013f74950SBarry Smith   PetscMPIInt    n;
701ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
702a30f8f8cSSatish Balay   MatScalar      *val;
703a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
704a30f8f8cSSatish Balay 
70591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
706a30f8f8cSSatish Balay   PetscFunctionBegin;
7074cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
708a30f8f8cSSatish Balay     while (1) {
709a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
710a30f8f8cSSatish Balay       if (!flg) break;
711a30f8f8cSSatish Balay 
712a30f8f8cSSatish Balay       for (i=0; i<n;) {
713a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
71426fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
71526fbe8dcSKarl Rupp           if (row[j] != rstart) break;
71626fbe8dcSKarl Rupp         }
717a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
718a30f8f8cSSatish Balay         else       ncols = n-i;
719a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
720dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
721a30f8f8cSSatish Balay         i    = j;
722a30f8f8cSSatish Balay       }
723a30f8f8cSSatish Balay     }
724a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
725a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
726a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
727a30f8f8cSSatish Balay        restore the original flags */
728a30f8f8cSSatish Balay     r1 = baij->roworiented;
729a30f8f8cSSatish Balay     r2 = a->roworiented;
73091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
73126fbe8dcSKarl Rupp 
732a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
733a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
73426fbe8dcSKarl Rupp 
73591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
736a30f8f8cSSatish Balay     while (1) {
737a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
738a30f8f8cSSatish Balay       if (!flg) break;
739a30f8f8cSSatish Balay 
740a30f8f8cSSatish Balay       for (i=0; i<n;) {
741a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
74226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
74326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
74426fbe8dcSKarl Rupp         }
745a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
746a30f8f8cSSatish Balay         else       ncols = n-i;
747dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
748a30f8f8cSSatish Balay         i    = j;
749a30f8f8cSSatish Balay       }
750a30f8f8cSSatish Balay     }
751a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
75226fbe8dcSKarl Rupp 
753a30f8f8cSSatish Balay     baij->roworiented = r1;
754a30f8f8cSSatish Balay     a->roworiented    = r2;
75526fbe8dcSKarl Rupp 
75691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
757a30f8f8cSSatish Balay   }
758a30f8f8cSSatish Balay 
759a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
760a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
761a30f8f8cSSatish Balay 
762a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
763a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
764a30f8f8cSSatish Balay   /*
765a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
766a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
767a30f8f8cSSatish Balay   */
768a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
769ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
770a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
771ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
772a30f8f8cSSatish Balay     }
773a30f8f8cSSatish Balay   }
774a30f8f8cSSatish Balay 
775a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
77640781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
777a30f8f8cSSatish Balay   }
778a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
779a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
780a30f8f8cSSatish Balay 
78174ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
78226fbe8dcSKarl Rupp 
783a30f8f8cSSatish Balay   baij->rowvalues = 0;
7844f9cfa9eSBarry Smith 
7854f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
7864f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
787e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
78809e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
789e56f5c9eSBarry Smith   }
790a30f8f8cSSatish Balay   PetscFunctionReturn(0);
791a30f8f8cSSatish Balay }
792a30f8f8cSSatish Balay 
7937da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
794dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
7959804daf3SBarry Smith #include <petscdraw.h>
7964a2ae208SSatish Balay #undef __FUNCT__
7974a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7986849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
799a30f8f8cSSatish Balay {
800a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
801dfbe8321SBarry Smith   PetscErrorCode    ierr;
802d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8037da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
804ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
805b0a32e0cSBarry Smith   PetscViewer       sviewer;
806f3ef73ceSBarry Smith   PetscViewerFormat format;
807a30f8f8cSSatish Balay 
808a30f8f8cSSatish Balay   PetscFunctionBegin;
809251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
810251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
81132077d6dSBarry Smith   if (iascii) {
812b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
813456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
814a30f8f8cSSatish Balay       MatInfo info;
815ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
816a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
817*1575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
8187b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
819a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
820e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
821a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
822e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
823b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
824*1575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
82507d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
826a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
827a30f8f8cSSatish Balay       PetscFunctionReturn(0);
828fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
82977431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
830a30f8f8cSSatish Balay       PetscFunctionReturn(0);
831c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
832c1490034SHong Zhang       PetscFunctionReturn(0);
833a30f8f8cSSatish Balay     }
834a30f8f8cSSatish Balay   }
835a30f8f8cSSatish Balay 
836a30f8f8cSSatish Balay   if (isdraw) {
837b0a32e0cSBarry Smith     PetscDraw draw;
838ace3abfcSBarry Smith     PetscBool isnull;
839b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
840b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
841a30f8f8cSSatish Balay   }
842a30f8f8cSSatish Balay 
8437da1fb6eSBarry Smith   {
844a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
845a30f8f8cSSatish Balay     Mat          A;
84665d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84765d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
848d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
849a30f8f8cSSatish Balay     MatScalar    *a;
8503e219373SBarry Smith     const char   *matname;
851a30f8f8cSSatish Balay 
852f204ca49SKris Buschelman     /* Should this be the same type as mat? */
853ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
854a30f8f8cSSatish Balay     if (!rank) {
855f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
856a30f8f8cSSatish Balay     } else {
857f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
858a30f8f8cSSatish Balay     }
859f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
8600298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
8612b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
8623bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
863a30f8f8cSSatish Balay 
864a30f8f8cSSatish Balay     /* copy over the A part */
86565d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
866a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
867785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
868a30f8f8cSSatish Balay 
869a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
870e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
87126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
872a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
873e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
874a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
875dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
87626fbe8dcSKarl Rupp           col++;
87726fbe8dcSKarl Rupp           a += bs;
878a30f8f8cSSatish Balay         }
879a30f8f8cSSatish Balay       }
880a30f8f8cSSatish Balay     }
881a30f8f8cSSatish Balay     /* copy over the B part */
88265d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
88365d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
884a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
885e9f7bc9eSHong Zhang 
886e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
88726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
888a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
889a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
890a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
891799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
89226fbe8dcSKarl Rupp           col++;
89326fbe8dcSKarl Rupp           a += bs;
894a30f8f8cSSatish Balay         }
895a30f8f8cSSatish Balay       }
896a30f8f8cSSatish Balay     }
897a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
898a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
899a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
900a30f8f8cSSatish Balay     /*
901a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
902b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
903a30f8f8cSSatish Balay     */
9043f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
905ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9063e219373SBarry Smith     if (!rank) {
907ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
9087da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
909a30f8f8cSSatish Balay     }
9103f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
911*1575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9126bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
913a30f8f8cSSatish Balay   }
914a30f8f8cSSatish Balay   PetscFunctionReturn(0);
915a30f8f8cSSatish Balay }
916a30f8f8cSSatish Balay 
9174a2ae208SSatish Balay #undef __FUNCT__
9184a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
919dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
920a30f8f8cSSatish Balay {
921dfbe8321SBarry Smith   PetscErrorCode ierr;
922ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
923a30f8f8cSSatish Balay 
924a30f8f8cSSatish Balay   PetscFunctionBegin;
925251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
926251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
927251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
928251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
92932077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
930a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
931a30f8f8cSSatish Balay   }
932a30f8f8cSSatish Balay   PetscFunctionReturn(0);
933a30f8f8cSSatish Balay }
934a30f8f8cSSatish Balay 
9354a2ae208SSatish Balay #undef __FUNCT__
9364a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
937dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
938a30f8f8cSSatish Balay {
939a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
940dfbe8321SBarry Smith   PetscErrorCode ierr;
941a30f8f8cSSatish Balay 
942a30f8f8cSSatish Balay   PetscFunctionBegin;
943a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
944d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
945a30f8f8cSSatish Balay #endif
946a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
947a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
9486bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
9496bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
950a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
9516bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
952a30f8f8cSSatish Balay #else
95305b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
954a30f8f8cSSatish Balay #endif
95505b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
9566bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
9576bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
9586bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
9596bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
9606bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
9616bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
9626bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
9636bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
9645755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
96505b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
96605b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
9676bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
9686bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
9696bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
970ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
97105b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
972a30f8f8cSSatish Balay #endif
97359ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
97459ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
975899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
976bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
977901853e0SKris Buschelman 
978dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
979bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
980bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
981bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
982bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
983bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
9846214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
9856214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
9866214f412SHong Zhang #endif
987a30f8f8cSSatish Balay   PetscFunctionReturn(0);
988a30f8f8cSSatish Balay }
989a30f8f8cSSatish Balay 
9904a2ae208SSatish Balay #undef __FUNCT__
991547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
992547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
993547795f9SHong Zhang {
994547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
995547795f9SHong Zhang   PetscErrorCode    ierr;
996547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
9976de40e93SBarry Smith   PetscScalar       *from;
9986de40e93SBarry Smith   const PetscScalar *x;
999547795f9SHong Zhang 
1000547795f9SHong Zhang   PetscFunctionBegin;
1001547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1002e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1003547795f9SHong Zhang 
1004547795f9SHong Zhang   /* diagonal part */
1005547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1006547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1007547795f9SHong Zhang 
1008547795f9SHong Zhang   /* subdiagonal part */
1009547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1010547795f9SHong Zhang 
1011547795f9SHong Zhang   /* copy x into the vec slvec0 */
1012547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10136de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1014547795f9SHong Zhang 
1015547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1016547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
10176de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1018547795f9SHong Zhang 
1019547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1020547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1021547795f9SHong Zhang   /* supperdiagonal part */
1022547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1023547795f9SHong Zhang   PetscFunctionReturn(0);
1024547795f9SHong Zhang }
1025547795f9SHong Zhang 
1026547795f9SHong Zhang #undef __FUNCT__
1027a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
1028dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1029a9d4b620SHong Zhang {
1030a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1031dfbe8321SBarry Smith   PetscErrorCode    ierr;
1032d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1033d9ca1df4SBarry Smith   PetscScalar       *from;
1034d9ca1df4SBarry Smith   const PetscScalar *x;
1035a9d4b620SHong Zhang 
1036a9d4b620SHong Zhang   PetscFunctionBegin;
1037a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1038e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1039a9d4b620SHong Zhang 
1040a9d4b620SHong Zhang   /* diagonal part */
1041a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1042fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1043a9d4b620SHong Zhang 
1044a9d4b620SHong Zhang   /* subdiagonal part */
1045a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1046fc165ae2SBarry Smith 
1047a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10481ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1049d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1050a9d4b620SHong Zhang 
1051fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1052fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1053d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1054fc165ae2SBarry Smith 
1055fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1056ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1057a9d4b620SHong Zhang   /* supperdiagonal part */
1058a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1059a9d4b620SHong Zhang   PetscFunctionReturn(0);
1060a9d4b620SHong Zhang }
1061a9d4b620SHong Zhang 
1062a9d4b620SHong Zhang #undef __FUNCT__
106340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
1064dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1065a30f8f8cSSatish Balay {
1066a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1067dfbe8321SBarry Smith   PetscErrorCode ierr;
10681302d50aSBarry Smith   PetscInt       nt;
1069a30f8f8cSSatish Balay 
1070a30f8f8cSSatish Balay   PetscFunctionBegin;
1071a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1072e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1073e7e72b3dSBarry Smith 
1074a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1075e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
107665d70643SHong Zhang 
1077ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1078b941877fSHong Zhang   /* do diagonal part */
1079b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1080b941877fSHong Zhang   /* do supperdiagonal part */
1081ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1082b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1083b941877fSHong Zhang   /* do subdiagonal part */
1084b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1085ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1086ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1087a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1088a30f8f8cSSatish Balay }
1089a30f8f8cSSatish Balay 
10904a2ae208SSatish Balay #undef __FUNCT__
10914a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1092dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1093a30f8f8cSSatish Balay {
1094de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1095dfbe8321SBarry Smith   PetscErrorCode    ierr;
1096d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1097d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1098d9ca1df4SBarry Smith   const PetscScalar *x;
1099a9d4b620SHong Zhang 
1100a9d4b620SHong Zhang   PetscFunctionBegin;
1101a9d4b620SHong Zhang   /*
1102ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
11030ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1104a9d4b620SHong Zhang   */
1105a9d4b620SHong Zhang   /* diagonal part */
1106a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
11072dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1108a9d4b620SHong Zhang 
1109a9d4b620SHong Zhang   /* subdiagonal part */
1110a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1111a9d4b620SHong Zhang 
1112a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11131ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1114d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1115a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
11161ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1117a9d4b620SHong Zhang 
1118ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1119d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1120ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1121a9d4b620SHong Zhang 
1122a9d4b620SHong Zhang   /* supperdiagonal part */
1123a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1124a9d4b620SHong Zhang   PetscFunctionReturn(0);
1125a9d4b620SHong Zhang }
1126a9d4b620SHong Zhang 
1127a9d4b620SHong Zhang #undef __FUNCT__
1128a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1129dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1130a9d4b620SHong Zhang {
1131a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1132dfbe8321SBarry Smith   PetscErrorCode ierr;
1133a30f8f8cSSatish Balay 
1134a30f8f8cSSatish Balay   PetscFunctionBegin;
1135ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1136b941877fSHong Zhang   /* do diagonal part */
1137b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1138b941877fSHong Zhang   /* do supperdiagonal part */
1139ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1140de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1141de8b6608SHong Zhang 
1142b941877fSHong Zhang   /* do subdiagonal part */
1143a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1144ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1145ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1146a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1147a30f8f8cSSatish Balay }
1148a30f8f8cSSatish Balay 
1149a30f8f8cSSatish Balay /*
1150a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1151a30f8f8cSSatish Balay    diagonal block
1152a30f8f8cSSatish Balay */
11534a2ae208SSatish Balay #undef __FUNCT__
11544a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1155dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1156a30f8f8cSSatish Balay {
1157a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1158dfbe8321SBarry Smith   PetscErrorCode ierr;
1159a30f8f8cSSatish Balay 
1160a30f8f8cSSatish Balay   PetscFunctionBegin;
1161e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1162a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1163a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1164a30f8f8cSSatish Balay }
1165a30f8f8cSSatish Balay 
11664a2ae208SSatish Balay #undef __FUNCT__
11674a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1168f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1169a30f8f8cSSatish Balay {
1170a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1171dfbe8321SBarry Smith   PetscErrorCode ierr;
1172a30f8f8cSSatish Balay 
1173a30f8f8cSSatish Balay   PetscFunctionBegin;
1174f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1175f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1176a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1177a30f8f8cSSatish Balay }
1178a30f8f8cSSatish Balay 
11794a2ae208SSatish Balay #undef __FUNCT__
11804a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11811302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1182a30f8f8cSSatish Balay {
1183d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1184d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1185d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1186d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1187d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1188899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1189d0d4cfc2SHong Zhang 
1190a30f8f8cSSatish Balay   PetscFunctionBegin;
1191e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1192d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1193d0d4cfc2SHong Zhang 
1194d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1195d0d4cfc2SHong Zhang     /*
1196d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1197d0d4cfc2SHong Zhang     */
1198d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1199d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1200d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1201d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1202d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
120326fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1204d0d4cfc2SHong Zhang     }
1205dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1206d0d4cfc2SHong Zhang   }
1207d0d4cfc2SHong Zhang 
1208e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1209d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1210d0d4cfc2SHong Zhang 
1211d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1212d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1213d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1214d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1215d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1216d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1217d0d4cfc2SHong Zhang 
1218d0d4cfc2SHong Zhang   cmap = mat->garray;
1219d0d4cfc2SHong Zhang   if (v  || idx) {
1220d0d4cfc2SHong Zhang     if (nztot) {
1221d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1222d0d4cfc2SHong Zhang       PetscInt imark = -1;
1223d0d4cfc2SHong Zhang       if (v) {
1224d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1225d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1226d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1227d0d4cfc2SHong Zhang           else break;
1228d0d4cfc2SHong Zhang         }
1229d0d4cfc2SHong Zhang         imark = i;
1230d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1231d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1232d0d4cfc2SHong Zhang       }
1233d0d4cfc2SHong Zhang       if (idx) {
1234d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1235d0d4cfc2SHong Zhang         if (imark > -1) {
1236d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1237d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1238d0d4cfc2SHong Zhang           }
1239d0d4cfc2SHong Zhang         } else {
1240d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
124126fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1242d0d4cfc2SHong Zhang             else break;
1243d0d4cfc2SHong Zhang           }
1244d0d4cfc2SHong Zhang           imark = i;
1245d0d4cfc2SHong Zhang         }
1246d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1247d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1248d0d4cfc2SHong Zhang       }
1249d0d4cfc2SHong Zhang     } else {
1250d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1251d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1252d0d4cfc2SHong Zhang     }
1253d0d4cfc2SHong Zhang   }
1254d0d4cfc2SHong Zhang   *nz  = nztot;
1255d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1256d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1257a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1258a30f8f8cSSatish Balay }
1259a30f8f8cSSatish Balay 
12604a2ae208SSatish Balay #undef __FUNCT__
12614a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
12621302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1263a30f8f8cSSatish Balay {
1264a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1265a30f8f8cSSatish Balay 
1266a30f8f8cSSatish Balay   PetscFunctionBegin;
1267e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1268a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1269a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1270a30f8f8cSSatish Balay }
1271a30f8f8cSSatish Balay 
12724a2ae208SSatish Balay #undef __FUNCT__
1273d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1274d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1275d0d4cfc2SHong Zhang {
1276d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1277d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1278d0d4cfc2SHong Zhang 
1279d0d4cfc2SHong Zhang   PetscFunctionBegin;
1280d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1281d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1282d0d4cfc2SHong Zhang }
1283d0d4cfc2SHong Zhang #undef __FUNCT__
1284d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1285d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1286d0d4cfc2SHong Zhang {
1287d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1288d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1289d0d4cfc2SHong Zhang 
1290d0d4cfc2SHong Zhang   PetscFunctionBegin;
1291d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1292d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1293d0d4cfc2SHong Zhang }
1294d0d4cfc2SHong Zhang 
1295d0d4cfc2SHong Zhang #undef __FUNCT__
129699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
129799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
129899cafbc1SBarry Smith {
129999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
130099cafbc1SBarry Smith   PetscErrorCode ierr;
130199cafbc1SBarry Smith 
130299cafbc1SBarry Smith   PetscFunctionBegin;
130399cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
130499cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
130599cafbc1SBarry Smith   PetscFunctionReturn(0);
130699cafbc1SBarry Smith }
130799cafbc1SBarry Smith 
130899cafbc1SBarry Smith #undef __FUNCT__
130999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
131099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
131199cafbc1SBarry Smith {
131299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
131399cafbc1SBarry Smith   PetscErrorCode ierr;
131499cafbc1SBarry Smith 
131599cafbc1SBarry Smith   PetscFunctionBegin;
131699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
131799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
131899cafbc1SBarry Smith   PetscFunctionReturn(0);
131999cafbc1SBarry Smith }
132099cafbc1SBarry Smith 
132136032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ()
132236032a97SHong Zhang    Input: isrow       - distributed(parallel),
132336032a97SHong Zhang           iscol_local - locally owned (seq)
132436032a97SHong Zhang */
132599cafbc1SBarry Smith #undef __FUNCT__
132636032a97SHong Zhang #define __FUNCT__ "ISEqual_private"
132736032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13288f46ffcaSHong Zhang {
13298f46ffcaSHong Zhang   PetscErrorCode ierr;
13308f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13318f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
133236032a97SHong Zhang 
133336032a97SHong Zhang   PetscFunctionBegin;
13348f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
13358f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
13361098a8e8SHong Zhang   if (sz1 > sz2) {
13371098a8e8SHong Zhang     *flg = PETSC_FALSE;
13381098a8e8SHong Zhang     PetscFunctionReturn(0);
13391098a8e8SHong Zhang   }
13408f46ffcaSHong Zhang 
13418f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
13428f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13438f46ffcaSHong Zhang 
13448f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
13458f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
13468f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
13478f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
13488f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
13498f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
13508f46ffcaSHong Zhang 
13518f46ffcaSHong Zhang   nmatch=0;
13528f46ffcaSHong Zhang   k     = 0;
13538f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
13548f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
13558f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13568f46ffcaSHong Zhang         k = j; nmatch++;
13578f46ffcaSHong Zhang         break;
13588f46ffcaSHong Zhang       }
13598f46ffcaSHong Zhang     }
13608f46ffcaSHong Zhang   }
13618f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
13628f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13638f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
13648f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
13651098a8e8SHong Zhang   if (nmatch < sz1) {
13661098a8e8SHong Zhang     *flg = PETSC_FALSE;
13671098a8e8SHong Zhang   } else {
13681098a8e8SHong Zhang     *flg = PETSC_TRUE;
13691098a8e8SHong Zhang   }
137036032a97SHong Zhang   PetscFunctionReturn(0);
13718f46ffcaSHong Zhang }
137236032a97SHong Zhang 
137336032a97SHong Zhang #undef __FUNCT__
137436032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
137536032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
137636032a97SHong Zhang {
137736032a97SHong Zhang   PetscErrorCode ierr;
137836032a97SHong Zhang   IS             iscol_local;
137936032a97SHong Zhang   PetscInt       csize;
138036032a97SHong Zhang   PetscBool      isequal;
138136032a97SHong Zhang 
138236032a97SHong Zhang   PetscFunctionBegin;
138336032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
138436032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
138536032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
138636032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
138736032a97SHong Zhang   } else {
138836032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
138936032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
139036032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
13918f46ffcaSHong Zhang   }
13928f46ffcaSHong Zhang 
13938f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
139436032a97SHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
13958f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
13968f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
13978f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
13988f46ffcaSHong Zhang   }
13998f46ffcaSHong Zhang   PetscFunctionReturn(0);
14008f46ffcaSHong Zhang }
14018f46ffcaSHong Zhang 
14028f46ffcaSHong Zhang #undef __FUNCT__
14034a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1404dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1405a30f8f8cSSatish Balay {
1406a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1407dfbe8321SBarry Smith   PetscErrorCode ierr;
1408a30f8f8cSSatish Balay 
1409a30f8f8cSSatish Balay   PetscFunctionBegin;
1410a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1411a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1412a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1413a30f8f8cSSatish Balay }
1414a30f8f8cSSatish Balay 
14154a2ae208SSatish Balay #undef __FUNCT__
14164a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1417dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1418a30f8f8cSSatish Balay {
1419a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1420a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1421dfbe8321SBarry Smith   PetscErrorCode ierr;
1422a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1423a30f8f8cSSatish Balay 
1424a30f8f8cSSatish Balay   PetscFunctionBegin;
1425d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
142626fbe8dcSKarl Rupp 
1427a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
142826fbe8dcSKarl Rupp 
1429a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1430a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
143126fbe8dcSKarl Rupp 
1432a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
143326fbe8dcSKarl Rupp 
1434a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1435a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1436a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1437a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1438a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1439a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1440a30f8f8cSSatish Balay     info->memory       = isend[3];
1441a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1442a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1443ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
144426fbe8dcSKarl Rupp 
1445a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1446a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1447a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1448a30f8f8cSSatish Balay     info->memory       = irecv[3];
1449a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1450a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1451ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
145226fbe8dcSKarl Rupp 
1453a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1454a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1455a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1456a30f8f8cSSatish Balay     info->memory       = irecv[3];
1457a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1458f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1459a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1460a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1461a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1462a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1463a30f8f8cSSatish Balay }
1464a30f8f8cSSatish Balay 
14654a2ae208SSatish Balay #undef __FUNCT__
14664a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1467ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1468a30f8f8cSSatish Balay {
1469a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1470d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1471dfbe8321SBarry Smith   PetscErrorCode ierr;
1472a30f8f8cSSatish Balay 
1473a30f8f8cSSatish Balay   PetscFunctionBegin;
1474e98b92d7SKris Buschelman   switch (op) {
1475512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1476e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147728b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1478a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1479e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14804e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14814e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1482e98b92d7SKris Buschelman     break;
1483e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
14844e0d8c25SBarry Smith     a->roworiented = flg;
148526fbe8dcSKarl Rupp 
14864e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14874e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1488e98b92d7SKris Buschelman     break;
14894e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1490290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1491e98b92d7SKris Buschelman     break;
1492e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14934e0d8c25SBarry Smith     a->donotstash = flg;
1494e98b92d7SKris Buschelman     break;
1495e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
14964e0d8c25SBarry Smith     a->ht_flag = flg;
1497e98b92d7SKris Buschelman     break;
14989a4540c5SBarry Smith   case MAT_HERMITIAN:
1499e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1500eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
150126fbe8dcSKarl Rupp 
1502547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1503eeffb40dSHong Zhang     break;
1504ffa07934SHong Zhang   case MAT_SPD:
1505ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1506ffa07934SHong Zhang     A->spd     = flg;
1507ffa07934SHong Zhang     if (flg) {
1508ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1509ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1510ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1511ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1512ffa07934SHong Zhang     }
1513ffa07934SHong Zhang     break;
151477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1515eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1516eeffb40dSHong Zhang     break;
151777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1518eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1519eeffb40dSHong Zhang     break;
15209a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1521e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1522290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
152377e54ba9SKris Buschelman     break;
1524d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15254e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1526d0d4cfc2SHong Zhang     break;
1527d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15284e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1529d0d4cfc2SHong Zhang     break;
1530d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15314e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1532d0d4cfc2SHong Zhang     break;
1533e98b92d7SKris Buschelman   default:
1534e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1535a30f8f8cSSatish Balay   }
1536a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1537a30f8f8cSSatish Balay }
1538a30f8f8cSSatish Balay 
15394a2ae208SSatish Balay #undef __FUNCT__
15408115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1541fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1542a30f8f8cSSatish Balay {
1543dfbe8321SBarry Smith   PetscErrorCode ierr;
15446e111a19SKarl Rupp 
1545a30f8f8cSSatish Balay   PetscFunctionBegin;
1546815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1547999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1548fc4dec0aSBarry Smith   }
15498115998fSBarry Smith   PetscFunctionReturn(0);
1550a30f8f8cSSatish Balay }
1551a30f8f8cSSatish Balay 
15524a2ae208SSatish Balay #undef __FUNCT__
15534a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1554dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1555a30f8f8cSSatish Balay {
1556a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1557a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1558dfbe8321SBarry Smith   PetscErrorCode ierr;
15595e90f9d9SHong Zhang   PetscInt       nv,m,n;
1560ace3abfcSBarry Smith   PetscBool      flg;
1561a30f8f8cSSatish Balay 
1562a30f8f8cSSatish Balay   PetscFunctionBegin;
1563a30f8f8cSSatish Balay   if (ll != rr) {
1564b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1565e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1566a30f8f8cSSatish Balay   }
1567b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1568b3bf805bSHong Zhang 
15695e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1570e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1571b3bf805bSHong Zhang 
15725e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1573e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
15745e90f9d9SHong Zhang 
1575ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15765e90f9d9SHong Zhang 
15775e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
15780298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
15795e90f9d9SHong Zhang 
15805e90f9d9SHong Zhang   /* scale the diagonal part */
1581a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1582a30f8f8cSSatish Balay 
15835e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1584ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15850298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1586a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1587a30f8f8cSSatish Balay }
1588a30f8f8cSSatish Balay 
15894a2ae208SSatish Balay #undef __FUNCT__
15904a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1591dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1592a30f8f8cSSatish Balay {
1593f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1594dfbe8321SBarry Smith   PetscErrorCode ierr;
1595a30f8f8cSSatish Balay 
1596a30f8f8cSSatish Balay   PetscFunctionBegin;
1597a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1598a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1599a30f8f8cSSatish Balay }
1600a30f8f8cSSatish Balay 
16016849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1602a30f8f8cSSatish Balay 
16034a2ae208SSatish Balay #undef __FUNCT__
16044a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1605ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1606a30f8f8cSSatish Balay {
1607a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1608a30f8f8cSSatish Balay   Mat            a,b,c,d;
1609ace3abfcSBarry Smith   PetscBool      flg;
1610dfbe8321SBarry Smith   PetscErrorCode ierr;
1611a30f8f8cSSatish Balay 
1612a30f8f8cSSatish Balay   PetscFunctionBegin;
1613a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1614a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1615a30f8f8cSSatish Balay 
1616a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1617abc0a331SBarry Smith   if (flg) {
1618a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1619a30f8f8cSSatish Balay   }
1620ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1621a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1622a30f8f8cSSatish Balay }
1623a30f8f8cSSatish Balay 
16244a2ae208SSatish Balay #undef __FUNCT__
16253c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
16263c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16273c896bc6SHong Zhang {
16283c896bc6SHong Zhang   PetscErrorCode ierr;
16293c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
16303c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
16313c896bc6SHong Zhang 
16323c896bc6SHong Zhang   PetscFunctionBegin;
16333c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16343c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1635d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
16363c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1637d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
16383c896bc6SHong Zhang   } else {
16393c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
16403c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
16413c896bc6SHong Zhang   }
16423c896bc6SHong Zhang   PetscFunctionReturn(0);
16433c896bc6SHong Zhang }
16443c896bc6SHong Zhang 
16453c896bc6SHong Zhang #undef __FUNCT__
16464994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
16474994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1648273d9f13SBarry Smith {
1649dfbe8321SBarry Smith   PetscErrorCode ierr;
1650273d9f13SBarry Smith 
1651273d9f13SBarry Smith   PetscFunctionBegin;
1652535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1653273d9f13SBarry Smith   PetscFunctionReturn(0);
1654273d9f13SBarry Smith }
1655a5e6ed63SBarry Smith 
16564fe895cdSHong Zhang #undef __FUNCT__
16574fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
16584fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16594fe895cdSHong Zhang {
16604fe895cdSHong Zhang   PetscErrorCode ierr;
16614fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16624fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16634fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
16644fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
16654fe895cdSHong Zhang 
16664fe895cdSHong Zhang   PetscFunctionBegin;
16674fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16684fe895cdSHong Zhang     PetscScalar alpha = a;
16694fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
16704fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1671c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
16728b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
16734fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
16744fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1675c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
16768b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1677a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1678ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1679ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1680ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1681ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
16824fe895cdSHong Zhang   } else {
16834de5dceeSHong Zhang     Mat      B;
16844de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
16854de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1686d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
16874de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
16884de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
16894de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
16904de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
16914de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
16924de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
16934de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
16944de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
16954de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
16964de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
16974de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
16984de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
16994de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
17004de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
17014de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1702d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
17034de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
17044fe895cdSHong Zhang   }
17054fe895cdSHong Zhang   PetscFunctionReturn(0);
17064fe895cdSHong Zhang }
17074fe895cdSHong Zhang 
1708a5e6ed63SBarry Smith #undef __FUNCT__
1709a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
17101302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1711a5e6ed63SBarry Smith {
17126849ba73SBarry Smith   PetscErrorCode ierr;
17131302d50aSBarry Smith   PetscInt       i;
171468906dc2SToby Isaac   PetscBool      flg,sorted;
1715a5e6ed63SBarry Smith 
17166849ba73SBarry Smith   PetscFunctionBegin;
171768906dc2SToby Isaac   for (i = 0; i < n; i++) {
171868906dc2SToby Isaac     ierr = ISSorted(irow[i],&sorted);CHKERRQ(ierr);
171968906dc2SToby Isaac     if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Row index set %d not sorted",i);
172068906dc2SToby Isaac     ierr = ISSorted(icol[i],&sorted);CHKERRQ(ierr);
172168906dc2SToby Isaac     if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Column index set %d not sorted",i);
172268906dc2SToby Isaac   }
17234dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1724a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1725a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
17264dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
17274dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1728a5e6ed63SBarry Smith     }
17294dcd73b1SHong Zhang   }
1730a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1731a5e6ed63SBarry Smith }
1732a5e6ed63SBarry Smith 
17337d68702bSBarry Smith #undef __FUNCT__
17347d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ"
17357d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17367d68702bSBarry Smith {
17377d68702bSBarry Smith   PetscErrorCode ierr;
17387d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17397d68702bSBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data,*bij = (Mat_SeqSBAIJ*)maij->B->data;
17407d68702bSBarry Smith 
17417d68702bSBarry Smith   PetscFunctionBegin;
17427d68702bSBarry Smith   if (!aij->nz && !bij->nz) {
17437d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
17447d68702bSBarry Smith   }
17457d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
17467d68702bSBarry Smith   PetscFunctionReturn(0);
17477d68702bSBarry Smith }
17487d68702bSBarry Smith 
1749a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17503964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1751a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1752a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1753a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
175497304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1755431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1756431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1757a30f8f8cSSatish Balay                                        0,
1758a30f8f8cSSatish Balay                                        0,
1759a30f8f8cSSatish Balay                                        0,
176097304618SKris Buschelman                                /* 10*/ 0,
1761a30f8f8cSSatish Balay                                        0,
1762a30f8f8cSSatish Balay                                        0,
176341f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1764a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
176597304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1766a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1767a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1768a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1769a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
177097304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1771a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1772a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1773a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1774d519adbfSMatthew Knepley                                /* 24*/ 0,
1775a30f8f8cSSatish Balay                                        0,
1776a30f8f8cSSatish Balay                                        0,
1777a30f8f8cSSatish Balay                                        0,
1778a30f8f8cSSatish Balay                                        0,
17794994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1780b5df2d14SHong Zhang                                        0,
1781a30f8f8cSSatish Balay                                        0,
1782a30f8f8cSSatish Balay                                        0,
1783a30f8f8cSSatish Balay                                        0,
1784d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1785a30f8f8cSSatish Balay                                        0,
1786a30f8f8cSSatish Balay                                        0,
1787a30f8f8cSSatish Balay                                        0,
1788a30f8f8cSSatish Balay                                        0,
1789d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1790a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1791d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1792a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
17933c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1794d519adbfSMatthew Knepley                                /* 44*/ 0,
1795a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
17967d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1797a30f8f8cSSatish Balay                                        0,
1798a30f8f8cSSatish Balay                                        0,
1799f73d5cc4SBarry Smith                                /* 49*/ 0,
1800a30f8f8cSSatish Balay                                        0,
1801a30f8f8cSSatish Balay                                        0,
1802a30f8f8cSSatish Balay                                        0,
1803a30f8f8cSSatish Balay                                        0,
1804d519adbfSMatthew Knepley                                /* 54*/ 0,
1805a30f8f8cSSatish Balay                                        0,
1806a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1807a30f8f8cSSatish Balay                                        0,
1808a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18098f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
1810a30f8f8cSSatish Balay                                        0,
1811a30f8f8cSSatish Balay                                        0,
1812357abbc8SBarry Smith                                        0,
181324d5174aSHong Zhang                                        0,
1814d519adbfSMatthew Knepley                                /* 64*/ 0,
181524d5174aSHong Zhang                                        0,
181624d5174aSHong Zhang                                        0,
181724d5174aSHong Zhang                                        0,
181824d5174aSHong Zhang                                        0,
1819d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
182024d5174aSHong Zhang                                        0,
182197304618SKris Buschelman                                        0,
182297304618SKris Buschelman                                        0,
182397304618SKris Buschelman                                        0,
1824d519adbfSMatthew Knepley                                /* 74*/ 0,
182597304618SKris Buschelman                                        0,
182697304618SKris Buschelman                                        0,
182797304618SKris Buschelman                                        0,
182897304618SKris Buschelman                                        0,
1829d519adbfSMatthew Knepley                                /* 79*/ 0,
183097304618SKris Buschelman                                        0,
183197304618SKris Buschelman                                        0,
183297304618SKris Buschelman                                        0,
18335bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1834d519adbfSMatthew Knepley                                /* 84*/ 0,
1835865e5f61SKris Buschelman                                        0,
1836865e5f61SKris Buschelman                                        0,
1837865e5f61SKris Buschelman                                        0,
1838865e5f61SKris Buschelman                                        0,
1839d519adbfSMatthew Knepley                                /* 89*/ 0,
1840865e5f61SKris Buschelman                                        0,
1841865e5f61SKris Buschelman                                        0,
1842865e5f61SKris Buschelman                                        0,
1843865e5f61SKris Buschelman                                        0,
1844d519adbfSMatthew Knepley                                /* 94*/ 0,
1845865e5f61SKris Buschelman                                        0,
1846865e5f61SKris Buschelman                                        0,
184799cafbc1SBarry Smith                                        0,
184899cafbc1SBarry Smith                                        0,
1849d519adbfSMatthew Knepley                                /* 99*/ 0,
185099cafbc1SBarry Smith                                        0,
185199cafbc1SBarry Smith                                        0,
185299cafbc1SBarry Smith                                        0,
185399cafbc1SBarry Smith                                        0,
1854d519adbfSMatthew Knepley                                /*104*/ 0,
185599cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1856d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1857d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
185895936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
185995936485SShri Abhyankar                                /*109*/ 0,
186095936485SShri Abhyankar                                        0,
186195936485SShri Abhyankar                                        0,
186295936485SShri Abhyankar                                        0,
186395936485SShri Abhyankar                                        0,
186495936485SShri Abhyankar                                /*114*/ 0,
186595936485SShri Abhyankar                                        0,
186695936485SShri Abhyankar                                        0,
186795936485SShri Abhyankar                                        0,
186895936485SShri Abhyankar                                        0,
186995936485SShri Abhyankar                                /*119*/ 0,
187095936485SShri Abhyankar                                        0,
187195936485SShri Abhyankar                                        0,
18723964eb88SJed Brown                                        0,
18733964eb88SJed Brown                                        0,
18743964eb88SJed Brown                                /*124*/ 0,
18753964eb88SJed Brown                                        0,
18763964eb88SJed Brown                                        0,
18773964eb88SJed Brown                                        0,
18783964eb88SJed Brown                                        0,
18793964eb88SJed Brown                                /*129*/ 0,
18803964eb88SJed Brown                                        0,
18813964eb88SJed Brown                                        0,
18823964eb88SJed Brown                                        0,
18833964eb88SJed Brown                                        0,
18843964eb88SJed Brown                                /*134*/ 0,
18853964eb88SJed Brown                                        0,
18863964eb88SJed Brown                                        0,
18873964eb88SJed Brown                                        0,
18883964eb88SJed Brown                                        0,
18893964eb88SJed Brown                                /*139*/ 0,
1890f9426fe0SMark Adams                                        0,
189159f5e6ceSHong Zhang                                        0,
189259f5e6ceSHong Zhang                                        0,
189359f5e6ceSHong Zhang                                        0,
189459f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
189599cafbc1SBarry Smith };
1896a30f8f8cSSatish Balay 
18974a2ae208SSatish Balay #undef __FUNCT__
18984a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
189911bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1900a30f8f8cSSatish Balay {
1901a30f8f8cSSatish Balay   PetscFunctionBegin;
1902a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1903a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1904a30f8f8cSSatish Balay }
1905a30f8f8cSSatish Balay 
19064a2ae208SSatish Balay #undef __FUNCT__
1907a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1908b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1909a23d5eceSKris Buschelman {
1910a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1911dfbe8321SBarry Smith   PetscErrorCode ierr;
1912535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1913a23d5eceSKris Buschelman 
1914a23d5eceSKris Buschelman   PetscFunctionBegin;
191533d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
191626283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
191726283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1918e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1919899cda47SBarry Smith 
1920a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1921d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1922d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1923c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1924a23d5eceSKris Buschelman 
1925d0f46423SBarry Smith   B->rmap->bs = bs;
1926a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1927a23d5eceSKris Buschelman   b->mbs      = mbs;
1928a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1929de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1930de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1931a23d5eceSKris Buschelman 
1932a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1933d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1934a23d5eceSKris Buschelman   }
1935d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1936d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1937a23d5eceSKris Buschelman 
1938d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1939d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1940a23d5eceSKris Buschelman 
1941526dfc15SBarry Smith   if (!B->preallocated) {
1942f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1943d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
19449c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
19453bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1946f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1947d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
19484aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
19493bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1950ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1951526dfc15SBarry Smith   }
1952a23d5eceSKris Buschelman 
1953526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1954526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
195526fbe8dcSKarl Rupp 
1956526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1957a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1958a23d5eceSKris Buschelman }
1959a23d5eceSKris Buschelman 
1960dfb205c3SBarry Smith #undef __FUNCT__
1961dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1962dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1963dfb205c3SBarry Smith {
1964dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1965dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1966dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1967dfb205c3SBarry Smith   PetscScalar    *values=0;
1968dfb205c3SBarry Smith   PetscErrorCode ierr;
1969dfb205c3SBarry Smith 
1970dfb205c3SBarry Smith   PetscFunctionBegin;
1971ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1972dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1973dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1974dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1975dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1976e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1977dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1978dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1979dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1980dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1981dfb205c3SBarry Smith 
1982dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1983dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1984dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1985dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1986dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1987dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1988dfb205c3SBarry Smith     JJ     = jj + ii[i];
1989dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1990dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1991dfb205c3SBarry Smith       JJ++;
1992dfb205c3SBarry Smith     }
1993dfb205c3SBarry Smith     d = 0;
1994dfb205c3SBarry Smith     for (; j<nz; j++) {
1995dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1996dfb205c3SBarry Smith       d++;
1997dfb205c3SBarry Smith     }
1998dfb205c3SBarry Smith     d_nnz[i] = d;
1999dfb205c3SBarry Smith     o_nnz[i] = nz - d;
2000dfb205c3SBarry Smith   }
2001dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2002dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2003dfb205c3SBarry Smith 
2004dfb205c3SBarry Smith   values = (PetscScalar*)V;
2005dfb205c3SBarry Smith   if (!values) {
2006785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2007dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2008dfb205c3SBarry Smith   }
2009dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2010dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2011dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2012dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2013dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2014dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2015dfb205c3SBarry Smith   }
2016dfb205c3SBarry Smith 
2017dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2018dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2019dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20207827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2021dfb205c3SBarry Smith   PetscFunctionReturn(0);
2022dfb205c3SBarry Smith }
2023dfb205c3SBarry Smith 
20240bad9183SKris Buschelman /*MC
2025fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2026828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2027828413b8SBarry Smith    the matrix is stored.
2028828413b8SBarry Smith 
2029828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2030828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
20310bad9183SKris Buschelman 
20320bad9183SKris Buschelman    Options Database Keys:
20330bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
20340bad9183SKris Buschelman 
20350bad9183SKris Buschelman   Level: beginner
20360bad9183SKris Buschelman 
20370bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
20380bad9183SKris Buschelman M*/
20390bad9183SKris Buschelman 
20408cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
2041aa5a9175SDahai Guo 
2042a23d5eceSKris Buschelman #undef __FUNCT__
20434a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
20448cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2045b5df2d14SHong Zhang {
2046b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2047dfbe8321SBarry Smith   PetscErrorCode ierr;
204894ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2049b5df2d14SHong Zhang 
2050b5df2d14SHong Zhang   PetscFunctionBegin;
2051b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2052b0a32e0cSBarry Smith   B->data = (void*)b;
2053b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2054b5df2d14SHong Zhang 
2055b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2056b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2057b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2058b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
205926fbe8dcSKarl Rupp 
2060ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2061ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2062b5df2d14SHong Zhang 
2063b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2064854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2065b5df2d14SHong Zhang 
2066b5df2d14SHong Zhang   /* build cache for off array entries formed */
2067ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
206826fbe8dcSKarl Rupp 
2069b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
20700298fd71SBarry Smith   b->colmap      = NULL;
20710298fd71SBarry Smith   b->garray      = NULL;
2072b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2073b5df2d14SHong Zhang 
2074b5df2d14SHong Zhang   /* stuff used in block assembly */
2075b5df2d14SHong Zhang   b->barray = 0;
2076b5df2d14SHong Zhang 
2077b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2078b5df2d14SHong Zhang   b->lvec    = 0;
2079b5df2d14SHong Zhang   b->Mvctx   = 0;
208040781036SHong Zhang   b->slvec0  = 0;
208140781036SHong Zhang   b->slvec0b = 0;
208240781036SHong Zhang   b->slvec1  = 0;
208340781036SHong Zhang   b->slvec1a = 0;
208440781036SHong Zhang   b->slvec1b = 0;
208540781036SHong Zhang   b->sMvctx  = 0;
2086b5df2d14SHong Zhang 
2087b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2088b5df2d14SHong Zhang   b->rowindices   = 0;
2089b5df2d14SHong Zhang   b->rowvalues    = 0;
2090b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2091b5df2d14SHong Zhang 
2092b5df2d14SHong Zhang   /* hash table stuff */
2093b5df2d14SHong Zhang   b->ht           = 0;
2094b5df2d14SHong Zhang   b->hd           = 0;
2095b5df2d14SHong Zhang   b->ht_size      = 0;
2096b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2097b5df2d14SHong Zhang   b->ht_fact      = 0;
2098b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2099b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2100b5df2d14SHong Zhang 
21017a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
21027a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21037a868f3eSHong Zhang 
210459ffdab8SBarry Smith   b->in_loc = 0;
210559ffdab8SBarry Smith   b->v_loc  = 0;
210659ffdab8SBarry Smith   b->n_loc  = 0;
210794ae4db5SBarry Smith 
2108bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2109bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2110bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
2111bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2112bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
2113bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
21146214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21156214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
21166214f412SHong Zhang #endif
2117aa5a9175SDahai Guo 
211823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
211923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
212023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
212123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
212226fbe8dcSKarl Rupp 
212317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
212494ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
212594ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
212694ae4db5SBarry Smith   if (flg) {
212794ae4db5SBarry Smith     PetscReal fact = 1.39;
212894ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
212994ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
213094ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
213194ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
213294ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
213394ae4db5SBarry Smith   }
213494ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2135b5df2d14SHong Zhang   PetscFunctionReturn(0);
2136b5df2d14SHong Zhang }
2137b5df2d14SHong Zhang 
2138209238afSKris Buschelman /*MC
2139002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2140209238afSKris Buschelman 
2141209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2142209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2143209238afSKris Buschelman 
2144209238afSKris Buschelman    Options Database Keys:
2145209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2146209238afSKris Buschelman 
2147209238afSKris Buschelman   Level: beginner
2148209238afSKris Buschelman 
2149209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2150209238afSKris Buschelman M*/
2151209238afSKris Buschelman 
21524a2ae208SSatish Balay #undef __FUNCT__
21534a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
2154b5df2d14SHong Zhang /*@C
2155b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2156b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2157b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2158b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2159b5df2d14SHong Zhang 
2160b5df2d14SHong Zhang    Collective on Mat
2161b5df2d14SHong Zhang 
2162b5df2d14SHong Zhang    Input Parameters:
21631c4f3114SJed Brown +  B - the matrix
2164bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2165bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2166b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2167b5df2d14SHong Zhang            submatrix  (same for all local rows)
2168b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
21696d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
21700298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
217195742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2172b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2173b5df2d14SHong Zhang            submatrix (same for all local rows).
2174b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2175c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
21760298fd71SBarry Smith            (possibly different for each block row) or NULL.
2177b5df2d14SHong Zhang 
2178b5df2d14SHong Zhang 
2179b5df2d14SHong Zhang    Options Database Keys:
2180b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
2181b5df2d14SHong Zhang                      block calculations (much slower)
2182b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
2183b5df2d14SHong Zhang 
2184b5df2d14SHong Zhang    Notes:
2185b5df2d14SHong Zhang 
2186b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2187b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2188b5df2d14SHong Zhang 
218949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
219049a6f317SBarry Smith 
2191b5df2d14SHong Zhang    Storage Information:
2192b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2193b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2194b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2195b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2196b5df2d14SHong Zhang 
2197b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2198b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
21990298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2200b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2201b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2202b5df2d14SHong Zhang 
2203aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2204aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2205aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2206aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2207aa95bbe8SBarry Smith 
2208b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2209b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2210b5df2d14SHong Zhang 
2211b5df2d14SHong Zhang .vb
2212b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2213a4b1a0f6SJed Brown           --------------------------
2214c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2215c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2216c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2217a4b1a0f6SJed Brown           --------------------------
2218b5df2d14SHong Zhang .ve
2219b5df2d14SHong Zhang 
2220b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2221b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
22226d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
22236d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2224b5df2d14SHong Zhang 
22256d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22266d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2227c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2228c2fc9fa9SBarry Smith 
2229b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2230b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2231b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2232b5df2d14SHong Zhang    matrices.
2233b5df2d14SHong Zhang 
2234b5df2d14SHong Zhang    Level: intermediate
2235b5df2d14SHong Zhang 
2236b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2237b5df2d14SHong Zhang 
2238ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2239b5df2d14SHong Zhang @*/
22407087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2241b5df2d14SHong Zhang {
22424ac538c5SBarry Smith   PetscErrorCode ierr;
2243b5df2d14SHong Zhang 
2244b5df2d14SHong Zhang   PetscFunctionBegin;
22456ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22466ba663aaSJed Brown   PetscValidType(B,1);
22476ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
22484ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2249b5df2d14SHong Zhang   PetscFunctionReturn(0);
2250b5df2d14SHong Zhang }
2251b5df2d14SHong Zhang 
22524a2ae208SSatish Balay #undef __FUNCT__
225369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2254a30f8f8cSSatish Balay /*@C
225569b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2256a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2257a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2258a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2259a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2260a30f8f8cSSatish Balay 
2261a30f8f8cSSatish Balay    Collective on MPI_Comm
2262a30f8f8cSSatish Balay 
2263a30f8f8cSSatish Balay    Input Parameters:
2264a30f8f8cSSatish Balay +  comm - MPI communicator
2265bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2266bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2267a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2268a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2269a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2270a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2271a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2272a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2273a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2274a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2275a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2276a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2277a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
22786d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
22790298fd71SBarry Smith            (possibly different for each block block row) or NULL.
228095742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
228195742e49SBarry Smith            set its value even if it is zero.
2282a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2283a30f8f8cSSatish Balay            submatrix (same for all local rows).
2284a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2285a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
22860298fd71SBarry Smith            each block row) or NULL.
2287a30f8f8cSSatish Balay 
2288a30f8f8cSSatish Balay    Output Parameter:
2289a30f8f8cSSatish Balay .  A - the matrix
2290a30f8f8cSSatish Balay 
2291a30f8f8cSSatish Balay    Options Database Keys:
2292a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2293a30f8f8cSSatish Balay                      block calculations (much slower)
2294a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2295a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2296a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2297a30f8f8cSSatish Balay 
2298175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2299ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2300175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2301175b88e8SBarry Smith 
2302a30f8f8cSSatish Balay    Notes:
2303d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
23046d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2305d1be2dadSMatthew Knepley 
2306a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2307a30f8f8cSSatish Balay    (possibly both).
2308a30f8f8cSSatish Balay 
2309a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2310a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2311a30f8f8cSSatish Balay 
231249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
231349a6f317SBarry Smith 
2314a30f8f8cSSatish Balay    Storage Information:
2315a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2316a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2317a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2318a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2319a30f8f8cSSatish Balay 
2320a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2321a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
23220298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2323a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2324a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2325a30f8f8cSSatish Balay 
2326a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2327a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2328a30f8f8cSSatish Balay 
2329a30f8f8cSSatish Balay .vb
2330a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2331a4b1a0f6SJed Brown           --------------------------
2332c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2333c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2334c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2335a4b1a0f6SJed Brown           --------------------------
2336a30f8f8cSSatish Balay .ve
2337a30f8f8cSSatish Balay 
2338a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2339a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
23406d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23416d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2342a30f8f8cSSatish Balay 
23436d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23446d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2345a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2346a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2347a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2348a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2349a30f8f8cSSatish Balay    matrices.
2350a30f8f8cSSatish Balay 
2351a30f8f8cSSatish Balay    Level: intermediate
2352a30f8f8cSSatish Balay 
2353a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2354a30f8f8cSSatish Balay 
235569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2356a30f8f8cSSatish Balay @*/
2357a30f8f8cSSatish Balay 
235869b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2359a30f8f8cSSatish Balay {
23606849ba73SBarry Smith   PetscErrorCode ierr;
23611302d50aSBarry Smith   PetscMPIInt    size;
2362a30f8f8cSSatish Balay 
2363a30f8f8cSSatish Balay   PetscFunctionBegin;
2364f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2365f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2366273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2367273d9f13SBarry Smith   if (size > 1) {
2368b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2369b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2370273d9f13SBarry Smith   } else {
2371273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2372273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2373273d9f13SBarry Smith   }
2374a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2375a30f8f8cSSatish Balay }
2376a30f8f8cSSatish Balay 
2377a30f8f8cSSatish Balay 
23784a2ae208SSatish Balay #undef __FUNCT__
23794a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
23806849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2381a30f8f8cSSatish Balay {
2382a30f8f8cSSatish Balay   Mat            mat;
2383a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2384dfbe8321SBarry Smith   PetscErrorCode ierr;
2385d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2386387bc808SHong Zhang   PetscScalar    *array;
2387a30f8f8cSSatish Balay 
2388a30f8f8cSSatish Balay   PetscFunctionBegin;
2389a30f8f8cSSatish Balay   *newmat = 0;
239026fbe8dcSKarl Rupp 
2391ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2392d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
23937adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
23941d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
23951e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
23961e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2397e1b6402fSHong Zhang 
2398d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2399273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
240082327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24017fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24027fff6886SHong Zhang 
2403b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2404a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2405a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2406a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2407a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2408a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2409a30f8f8cSSatish Balay 
2410899cda47SBarry Smith 
2411a30f8f8cSSatish Balay   a->size         = oldmat->size;
2412a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2413a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2414a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2415a30f8f8cSSatish Balay   a->rowindices   = 0;
2416a30f8f8cSSatish Balay   a->rowvalues    = 0;
2417a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2418a30f8f8cSSatish Balay   a->barray       = 0;
2419899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2420899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2421899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2422899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2423a30f8f8cSSatish Balay 
2424a30f8f8cSSatish Balay   /* hash table stuff */
2425a30f8f8cSSatish Balay   a->ht           = 0;
2426a30f8f8cSSatish Balay   a->hd           = 0;
2427a30f8f8cSSatish Balay   a->ht_size      = 0;
2428a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2429a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2430a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2431a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2432a30f8f8cSSatish Balay 
2433899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2434a30f8f8cSSatish Balay   if (oldmat->colmap) {
2435a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2436a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2437a30f8f8cSSatish Balay #else
2438854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
24393bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
24401302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2441a30f8f8cSSatish Balay #endif
2442a30f8f8cSSatish Balay   } else a->colmap = 0;
2443387bc808SHong Zhang 
2444a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2445785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
24463bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
24471302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2448a30f8f8cSSatish Balay   } else a->garray = 0;
2449a30f8f8cSSatish Balay 
2450ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2451a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
24523bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2453a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
24543bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
245582327fa8SHong Zhang 
245682327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
24573bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
245882327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
24593bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2460387bc808SHong Zhang 
2461387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
24621ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2463778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2464778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
24651ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
24661ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2467778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
24681ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
24693bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
24703bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
24713bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
24723bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
24733bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2474387bc808SHong Zhang 
2475387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2476387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2477387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
24783bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
247982327fa8SHong Zhang 
2480a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
24813bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2482a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
24833bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2484140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2485a30f8f8cSSatish Balay   *newmat = mat;
2486a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2487a30f8f8cSSatish Balay }
2488a30f8f8cSSatish Balay 
24894a2ae208SSatish Balay #undef __FUNCT__
24905bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2491112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
249295936485SShri Abhyankar {
249395936485SShri Abhyankar   PetscErrorCode ierr;
249495936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
249595936485SShri Abhyankar   PetscScalar    *vals,*buf;
2496ce94432eSBarry Smith   MPI_Comm       comm;
249795936485SShri Abhyankar   MPI_Status     status;
2498adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2499adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
250095936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
25013059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
250295936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2503461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
250495936485SShri Abhyankar   int            fd;
250595936485SShri Abhyankar 
250695936485SShri Abhyankar   PetscFunctionBegin;
2507c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2508c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2509ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
25100298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
25110298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
251295936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
25133059b6faSBarry Smith   if (bs < 0) bs = 1;
251495936485SShri Abhyankar 
251595936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
251695936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
251795936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
25185872f025SBarry Smith   if (!rank) {
251995936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
252095936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
252195936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
252295936485SShri Abhyankar   }
252395936485SShri Abhyankar 
252495936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
252526fbe8dcSKarl Rupp   M    = header[1];
252626fbe8dcSKarl Rupp   N    = header[2];
252795936485SShri Abhyankar 
252895936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2529461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2530461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
253195936485SShri Abhyankar 
253295936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
253395936485SShri Abhyankar 
253495936485SShri Abhyankar   /*
253595936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
253695936485SShri Abhyankar      divisible by the blocksize
253795936485SShri Abhyankar   */
253895936485SShri Abhyankar   Mbs        = M/bs;
253995936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
254095936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
254195936485SShri Abhyankar   else                  Mbs++;
254295936485SShri Abhyankar   if (extra_rows &&!rank) {
254395936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
254495936485SShri Abhyankar   }
254595936485SShri Abhyankar 
254695936485SShri Abhyankar   /* determine ownership of all rows */
254795936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
254895936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
254995936485SShri Abhyankar     m   = mbs*bs;
255095936485SShri Abhyankar   } else { /* User Set */
255195936485SShri Abhyankar     m   = newmat->rmap->n;
255295936485SShri Abhyankar     mbs = m/bs;
255395936485SShri Abhyankar   }
2554dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
25554dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
255695936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
255795936485SShri Abhyankar   rowners[0] = 0;
255895936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
255995936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
256095936485SShri Abhyankar   rstart = rowners[rank];
256195936485SShri Abhyankar   rend   = rowners[rank+1];
256295936485SShri Abhyankar 
256395936485SShri Abhyankar   /* distribute row lengths to all processors */
2564785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
256595936485SShri Abhyankar   if (!rank) {
2566854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
256795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
256895936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2569785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
257095936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
257195936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
257295936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
257395936485SShri Abhyankar   } else {
257495936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
257595936485SShri Abhyankar   }
257695936485SShri Abhyankar 
257795936485SShri Abhyankar   if (!rank) {   /* procs[0] */
257895936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2579785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
258095936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
258195936485SShri Abhyankar     for (i=0; i<size; i++) {
258295936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
258395936485SShri Abhyankar         procsnz[i] += rowlengths[j];
258495936485SShri Abhyankar       }
258595936485SShri Abhyankar     }
258695936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
258795936485SShri Abhyankar 
258895936485SShri Abhyankar     /* determine max buffer needed and allocate it */
258995936485SShri Abhyankar     maxnz = 0;
259095936485SShri Abhyankar     for (i=0; i<size; i++) {
259195936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
259295936485SShri Abhyankar     }
2593785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
259495936485SShri Abhyankar 
259595936485SShri Abhyankar     /* read in my part of the matrix column indices  */
259695936485SShri Abhyankar     nz     = procsnz[0];
2597785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
259895936485SShri Abhyankar     mycols = ibuf;
259995936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
260095936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
260126fbe8dcSKarl Rupp     if (size == 1) {
260226fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
260326fbe8dcSKarl Rupp     }
260495936485SShri Abhyankar 
260595936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
260695936485SShri Abhyankar     for (i=1; i<size-1; i++) {
260795936485SShri Abhyankar       nz   = procsnz[i];
260895936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
260995936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
261095936485SShri Abhyankar     }
261195936485SShri Abhyankar     /* read in the stuff for the last proc */
261295936485SShri Abhyankar     if (size != 1) {
261395936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
261495936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
261595936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
261695936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
261795936485SShri Abhyankar     }
261895936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
261995936485SShri Abhyankar   } else {  /* procs[i], i>0 */
262095936485SShri Abhyankar     /* determine buffer space needed for message */
262195936485SShri Abhyankar     nz = 0;
262226fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2623785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
262495936485SShri Abhyankar     mycols = ibuf;
262595936485SShri Abhyankar     /* receive message of column indices*/
262695936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
262795936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
262895936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
262995936485SShri Abhyankar   }
263095936485SShri Abhyankar 
263195936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2632dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2633dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
263495936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
263595936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
263695936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
263795936485SShri Abhyankar   rowcount = 0;
263895936485SShri Abhyankar   nzcount  = 0;
263995936485SShri Abhyankar   for (i=0; i<mbs; i++) {
264095936485SShri Abhyankar     dcount  = 0;
264195936485SShri Abhyankar     odcount = 0;
264295936485SShri Abhyankar     for (j=0; j<bs; j++) {
264395936485SShri Abhyankar       kmax = locrowlens[rowcount];
264495936485SShri Abhyankar       for (k=0; k<kmax; k++) {
264595936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
264695936485SShri Abhyankar         if (!mask[tmp]) {
264795936485SShri Abhyankar           mask[tmp] = 1;
264895936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
264995936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
265095936485SShri Abhyankar         }
265195936485SShri Abhyankar       }
265295936485SShri Abhyankar       rowcount++;
265395936485SShri Abhyankar     }
265495936485SShri Abhyankar 
265595936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
265695936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
265795936485SShri Abhyankar 
265895936485SShri Abhyankar     /* zero out the mask elements we set */
265995936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
266095936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
266195936485SShri Abhyankar   }
266295936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
266395936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
26646816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
266595936485SShri Abhyankar 
266695936485SShri Abhyankar   if (!rank) {
2667785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
266895936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
266995936485SShri Abhyankar     nz     = procsnz[0];
267095936485SShri Abhyankar     vals   = buf;
267195936485SShri Abhyankar     mycols = ibuf;
267295936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
267395936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
267426fbe8dcSKarl Rupp     if (size == 1) {
267526fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
267626fbe8dcSKarl Rupp     }
267795936485SShri Abhyankar 
267895936485SShri Abhyankar     /* insert into matrix */
267995936485SShri Abhyankar     jj = rstart*bs;
268095936485SShri Abhyankar     for (i=0; i<m; i++) {
268195936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
268295936485SShri Abhyankar       mycols += locrowlens[i];
268395936485SShri Abhyankar       vals   += locrowlens[i];
268495936485SShri Abhyankar       jj++;
268595936485SShri Abhyankar     }
268695936485SShri Abhyankar 
268795936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
268895936485SShri Abhyankar     for (i=1; i<size-1; i++) {
268995936485SShri Abhyankar       nz   = procsnz[i];
269095936485SShri Abhyankar       vals = buf;
269195936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
269295936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
269395936485SShri Abhyankar     }
269495936485SShri Abhyankar     /* the last proc */
269595936485SShri Abhyankar     if (size != 1) {
269695936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
269795936485SShri Abhyankar       vals = buf;
269895936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
269995936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
270095936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
270195936485SShri Abhyankar     }
270295936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
270395936485SShri Abhyankar 
270495936485SShri Abhyankar   } else {
270595936485SShri Abhyankar     /* receive numeric values */
2706785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
270795936485SShri Abhyankar 
270895936485SShri Abhyankar     /* receive message of values*/
270995936485SShri Abhyankar     vals   = buf;
271095936485SShri Abhyankar     mycols = ibuf;
271195936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
271295936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
271395936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
271495936485SShri Abhyankar 
271595936485SShri Abhyankar     /* insert into matrix */
271695936485SShri Abhyankar     jj = rstart*bs;
271795936485SShri Abhyankar     for (i=0; i<m; i++) {
271895936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
271995936485SShri Abhyankar       mycols += locrowlens[i];
272095936485SShri Abhyankar       vals   += locrowlens[i];
272195936485SShri Abhyankar       jj++;
272295936485SShri Abhyankar     }
272395936485SShri Abhyankar   }
272495936485SShri Abhyankar 
272595936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
272695936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
272795936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
272895936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
272995936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
273095936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
273195936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
273295936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
273395936485SShri Abhyankar   PetscFunctionReturn(0);
273495936485SShri Abhyankar }
273595936485SShri Abhyankar 
273695936485SShri Abhyankar #undef __FUNCT__
27374a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2738dcf5cc72SBarry Smith /*XXXXX@
2739a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2740a30f8f8cSSatish Balay 
2741a30f8f8cSSatish Balay    Input Parameters:
2742a30f8f8cSSatish Balay .  mat  - the matrix
2743a30f8f8cSSatish Balay .  fact - factor
2744a30f8f8cSSatish Balay 
2745c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2746a30f8f8cSSatish Balay 
2747a30f8f8cSSatish Balay    Level: advanced
2748a30f8f8cSSatish Balay 
2749a30f8f8cSSatish Balay   Notes:
2750a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2751a30f8f8cSSatish Balay 
2752a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2753a30f8f8cSSatish Balay 
2754a30f8f8cSSatish Balay .seealso: MatSetOption()
2755dcf5cc72SBarry Smith @XXXXX*/
2756dcf5cc72SBarry Smith 
275724d5174aSHong Zhang 
27584a2ae208SSatish Balay #undef __FUNCT__
2759985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2760985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
276124d5174aSHong Zhang {
276224d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2763f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2764ca54ac64SHong Zhang   PetscReal      atmp;
276587828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2766dfbe8321SBarry Smith   PetscErrorCode ierr;
27671302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
27681302d50aSBarry Smith   PetscMPIInt    rank,size;
27691302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
277087828ca2SBarry Smith   PetscScalar    *va;
27718a1c53f2SBarry Smith   MatScalar      *ba;
2772f4c0e9e4SHong Zhang   MPI_Status     stat;
277324d5174aSHong Zhang 
277424d5174aSHong Zhang   PetscFunctionBegin;
2775e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
27760298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
27771ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2778f4c0e9e4SHong Zhang 
2779ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2780ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2781f4c0e9e4SHong Zhang 
2782d0f46423SBarry Smith   bs  = A->rmap->bs;
2783f4c0e9e4SHong Zhang   mbs = a->mbs;
2784f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2785f4c0e9e4SHong Zhang   ba  = b->a;
2786f4c0e9e4SHong Zhang   bi  = b->i;
2787f4c0e9e4SHong Zhang   bj  = b->j;
2788f4c0e9e4SHong Zhang 
2789f4c0e9e4SHong Zhang   /* find ownerships */
2790d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2791f4c0e9e4SHong Zhang 
2792f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2793785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2794ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2795f4c0e9e4SHong Zhang 
2796f4c0e9e4SHong Zhang   /* row_max for B */
2797b8475685SHong Zhang   if (rank != size-1) {
2798f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2799f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2800f4c0e9e4SHong Zhang       brow  = bs*i;
2801f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2802f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2803f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2804ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
280504d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2806f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2807f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2808ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2809ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2810f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2811f4c0e9e4SHong Zhang           }
2812f4c0e9e4SHong Zhang         }
2813f4c0e9e4SHong Zhang         bj++;
2814f4c0e9e4SHong Zhang       }
2815f4c0e9e4SHong Zhang     }
2816f4c0e9e4SHong Zhang 
2817f4c0e9e4SHong Zhang     /* send values to its owners */
2818f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2819f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2820ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2821ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2822ca54ac64SHong Zhang     }
2823f4c0e9e4SHong Zhang   }
2824f4c0e9e4SHong Zhang 
2825f4c0e9e4SHong Zhang   /* receive values */
2826ca54ac64SHong Zhang   if (rank) {
2827f4c0e9e4SHong Zhang     rvalues = work;
2828ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2829f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2830ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2831f4c0e9e4SHong Zhang       /* process values */
2832f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2833ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2834f4c0e9e4SHong Zhang       }
2835f4c0e9e4SHong Zhang     }
2836ca54ac64SHong Zhang   }
2837f4c0e9e4SHong Zhang 
28381ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2839ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
284024d5174aSHong Zhang   PetscFunctionReturn(0);
284124d5174aSHong Zhang }
28422798e883SHong Zhang 
28432798e883SHong Zhang #undef __FUNCT__
284441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
284541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
28462798e883SHong Zhang {
28472798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2848dfbe8321SBarry Smith   PetscErrorCode    ierr;
2849d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
28503649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2851ffe4fb16SHong Zhang   Vec               bb1;
28523649974fSBarry Smith   const PetscScalar *b;
2853ffe4fb16SHong Zhang 
2854ffe4fb16SHong Zhang   PetscFunctionBegin;
2855e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2856e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2857ffe4fb16SHong Zhang 
2858a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
285941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2860a2b30743SBarry Smith     PetscFunctionReturn(0);
2861a2b30743SBarry Smith   }
2862a2b30743SBarry Smith 
2863ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2864ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
286541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2866ffe4fb16SHong Zhang       its--;
2867ffe4fb16SHong Zhang     }
2868ffe4fb16SHong Zhang 
2869ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2870ffe4fb16SHong Zhang     while (its--) {
2871ffe4fb16SHong Zhang 
2872ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2873ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2874ffe4fb16SHong Zhang 
2875ffe4fb16SHong Zhang       /* copy xx into slvec0a */
28761ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
28771ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2878ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
28791ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2880ffe4fb16SHong Zhang 
2881efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2882ffe4fb16SHong Zhang 
2883ffe4fb16SHong Zhang       /* copy bb into slvec1a */
28841ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
28853649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2886ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
28871ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2888ffe4fb16SHong Zhang 
2889ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2890fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2891ffe4fb16SHong Zhang 
2892ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
28931ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2894a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2895ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2896ffe4fb16SHong Zhang 
2897ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2898ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2899ffe4fb16SHong Zhang 
2900ffe4fb16SHong Zhang       /* local diagonal sweep */
290141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2902ffe4fb16SHong Zhang     }
29036bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2904fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
290541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2906fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
290741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2908fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2909fa22f6d0SBarry Smith     Vec               xx1;
2910ace3abfcSBarry Smith     PetscBool         hasop;
291120f1ed55SBarry Smith     const PetscScalar *diag;
2912887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
291320f1ed55SBarry Smith     PetscInt          i,n;
2914fa22f6d0SBarry Smith 
2915fa22f6d0SBarry Smith     if (!mat->xx1) {
2916fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2917fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2918fa22f6d0SBarry Smith     }
2919fa22f6d0SBarry Smith     xx1 = mat->xx1;
2920fa22f6d0SBarry Smith     bb1 = mat->bb1;
2921fa22f6d0SBarry Smith 
292241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2923fa22f6d0SBarry Smith 
2924fa22f6d0SBarry Smith     if (!mat->diag) {
2925effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
29262a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2927fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2928fa22f6d0SBarry Smith     }
2929fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2930fa22f6d0SBarry Smith 
2931fa22f6d0SBarry Smith     if (hasop) {
2932fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2933887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
293420f1ed55SBarry Smith     } else {
293520f1ed55SBarry Smith       /*
293620f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
293720f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2938887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
293920f1ed55SBarry Smith       */
294020f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29413649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29423649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
294320f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
294420f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2945887ee2caSBarry Smith       if (omega == 1.0) {
294626fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
294720f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2948887ee2caSBarry Smith       } else {
294926fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2950887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2951887ee2caSBarry Smith       }
295220f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29533649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29543649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
295520f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
295620f1ed55SBarry Smith     }
2957fa22f6d0SBarry Smith 
2958fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2959fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2960fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2961fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2962fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2963fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2964fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2965fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2966fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2967fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2968effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2969fa22f6d0SBarry Smith 
2970fa22f6d0SBarry Smith     /* local sweep */
297141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2972fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2973f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2974ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2975ffe4fb16SHong Zhang }
2976ffe4fb16SHong Zhang 
2977ffe4fb16SHong Zhang #undef __FUNCT__
297841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
297941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2980ffe4fb16SHong Zhang {
2981ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2982dfbe8321SBarry Smith   PetscErrorCode ierr;
29832798e883SHong Zhang   Vec            lvec1,bb1;
29842798e883SHong Zhang 
29852798e883SHong Zhang   PetscFunctionBegin;
2986e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2987e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
29882798e883SHong Zhang 
2989c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
29902798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
299141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
29922798e883SHong Zhang       its--;
29932798e883SHong Zhang     }
29942798e883SHong Zhang 
29952798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
29962798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
29972798e883SHong Zhang     while (its--) {
2998ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
29992798e883SHong Zhang 
30002798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
30012798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3002efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
30032798e883SHong Zhang 
3004ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
30052798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3006ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30072798e883SHong Zhang 
30082798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3009efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
30102798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
30112798e883SHong Zhang 
3012ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30132798e883SHong Zhang 
3014c14dc6b6SHong Zhang       /* diagonal sweep */
301541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
30162798e883SHong Zhang     }
30176bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
30186bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
30196bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
30202798e883SHong Zhang   PetscFunctionReturn(0);
30212798e883SHong Zhang }
30222798e883SHong Zhang 
3023dfb205c3SBarry Smith #undef __FUNCT__
3024dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
3025dfb205c3SBarry Smith /*@
3026dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3027dfb205c3SBarry Smith          CSR format the local rows.
3028dfb205c3SBarry Smith 
3029dfb205c3SBarry Smith    Collective on MPI_Comm
3030dfb205c3SBarry Smith 
3031dfb205c3SBarry Smith    Input Parameters:
3032dfb205c3SBarry Smith +  comm - MPI communicator
3033dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3034dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3035dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3036dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3037dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3038dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3039dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3040dfb205c3SBarry Smith .   i - row indices
3041dfb205c3SBarry Smith .   j - column indices
3042dfb205c3SBarry Smith -   a - matrix values
3043dfb205c3SBarry Smith 
3044dfb205c3SBarry Smith    Output Parameter:
3045dfb205c3SBarry Smith .   mat - the matrix
3046dfb205c3SBarry Smith 
3047dfb205c3SBarry Smith    Level: intermediate
3048dfb205c3SBarry Smith 
3049dfb205c3SBarry Smith    Notes:
3050dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3051dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3052dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3053dfb205c3SBarry Smith 
3054dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3055dfb205c3SBarry Smith 
3056dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3057dfb205c3SBarry Smith 
3058dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
305969b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3060dfb205c3SBarry Smith @*/
30617087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3062dfb205c3SBarry Smith {
3063dfb205c3SBarry Smith   PetscErrorCode ierr;
3064dfb205c3SBarry Smith 
3065dfb205c3SBarry Smith 
3066dfb205c3SBarry Smith   PetscFunctionBegin;
3067f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3068dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3069dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3070dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3071dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3072dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3073dfb205c3SBarry Smith   PetscFunctionReturn(0);
3074dfb205c3SBarry Smith }
3075dfb205c3SBarry Smith 
3076dfb205c3SBarry Smith 
3077dfb205c3SBarry Smith #undef __FUNCT__
3078dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
3079dfb205c3SBarry Smith /*@C
3080dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
3081dfb205c3SBarry Smith    (the default parallel PETSc format).
3082dfb205c3SBarry Smith 
3083dfb205c3SBarry Smith    Collective on MPI_Comm
3084dfb205c3SBarry Smith 
3085dfb205c3SBarry Smith    Input Parameters:
30861c4f3114SJed Brown +  B - the matrix
3087dfb205c3SBarry Smith .  bs - the block size
3088dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3089dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3090dfb205c3SBarry Smith -  v - optional values in the matrix
3091dfb205c3SBarry Smith 
3092dfb205c3SBarry Smith    Level: developer
3093dfb205c3SBarry Smith 
3094dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3095dfb205c3SBarry Smith 
309669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3097dfb205c3SBarry Smith @*/
30987087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3099dfb205c3SBarry Smith {
31004ac538c5SBarry Smith   PetscErrorCode ierr;
3101dfb205c3SBarry Smith 
3102dfb205c3SBarry Smith   PetscFunctionBegin;
31034ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3104dfb205c3SBarry Smith   PetscFunctionReturn(0);
3105dfb205c3SBarry Smith }
3106dfb205c3SBarry Smith 
3107de4b53ebSHong Zhang #undef __FUNCT__
310810c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
310910c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
31104dcd73b1SHong Zhang {
31114dcd73b1SHong Zhang   PetscErrorCode ierr;
311210c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
311310c56fdeSHong Zhang   PetscInt       *indx;
311410c56fdeSHong Zhang   PetscScalar    *values;
3115dfb205c3SBarry Smith 
31164dcd73b1SHong Zhang   PetscFunctionBegin;
31174dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
311810c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
311910c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
312010c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
312110c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
31224dcd73b1SHong Zhang 
312310c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
312410c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
312510c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
312610c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
312710c56fdeSHong Zhang     }
312810c56fdeSHong Zhang     /* Check sum(n) = Nbs */
312910c56fdeSHong Zhang     ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
313010c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
313110c56fdeSHong Zhang 
313210c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
313310c56fdeSHong Zhang     rstart -= mbs;
31344dcd73b1SHong Zhang 
31354dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
313610c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3137e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
313810c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
31394dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
31404dcd73b1SHong Zhang       nnz = nnz/bs;
31414dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
31424dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
31434dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
31444dcd73b1SHong Zhang     }
3145e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
31464dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
31474dcd73b1SHong Zhang 
31484dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
314910c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
31504dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
31514dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
31524dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
31534dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
31544dcd73b1SHong Zhang   }
31554dcd73b1SHong Zhang 
315610c56fdeSHong Zhang   /* numeric phase */
31574dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
315810c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
31594dcd73b1SHong Zhang 
3160e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
31614dcd73b1SHong Zhang   for (i=0; i<m; i++) {
31624dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31634dcd73b1SHong Zhang     Ii   = i + rstart;
316410c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
31654dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31664dcd73b1SHong Zhang   }
3167e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
316810c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
316910c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
31704dcd73b1SHong Zhang   PetscFunctionReturn(0);
31714dcd73b1SHong Zhang }
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