xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 1baa6e3354bfe224b33a0c158f482508792a8a6e)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*);
12d24d4204SJose E. Roman #endif
13b147fbf3SStefano Zampini 
14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
16b147fbf3SStefano Zampini {
17b147fbf3SStefano Zampini   Mat            preallocator;
18b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
19b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
20b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
21b147fbf3SStefano Zampini 
22b147fbf3SStefano Zampini   PetscFunctionBegin;
23b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
24b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
25b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
26b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
279566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap,X[i]->rmap,&cong));
285f80ce2aSJacob Faibussowitsch     PetscCheck(cong,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
29b147fbf3SStefano Zampini   }
30b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
319566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B,&bs));
329566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B,&M,&N));
339566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B,&m,&n));
349566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B),&preallocator));
359566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator,MATPREALLOCATOR));
369566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator,bs));
379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator,m,n,M,N));
389566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
399566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator,&rstart,&rend));
40b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
41b147fbf3SStefano Zampini     PetscInt          ncols;
42b147fbf3SStefano Zampini     const PetscInt    *row;
43b147fbf3SStefano Zampini     const PetscScalar *vals;
44b147fbf3SStefano Zampini 
45b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
469566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i],r,&ncols,&row,&vals));
479566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES));
48b147fbf3SStefano Zampini       if (symm && symm[i]) {
499566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES));
50b147fbf3SStefano Zampini       }
519566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i],r,&ncols,&row,&vals));
52b147fbf3SStefano Zampini     }
53b147fbf3SStefano Zampini   }
549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY));
559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY));
569566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator,fill,B));
579566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
58b147fbf3SStefano Zampini   PetscFunctionReturn(0);
59b147fbf3SStefano Zampini }
60b147fbf3SStefano Zampini 
6128d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
62b147fbf3SStefano Zampini {
63b147fbf3SStefano Zampini   Mat            B;
64b147fbf3SStefano Zampini   PetscInt       r;
65b147fbf3SStefano Zampini 
66b147fbf3SStefano Zampini   PetscFunctionBegin;
67b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
6828d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE,isdense;
69b147fbf3SStefano Zampini     PetscInt  bs;
70b147fbf3SStefano Zampini 
719566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B));
729566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N));
739566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,newtype));
749566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A,&bs));
759566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B,bs));
769566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
779566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
789566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,""));
7928d58a37SPierre Jolivet     if (!isdense) {
809566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
819566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE));
829566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
8328d58a37SPierre Jolivet     } else {
849566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
8528d58a37SPierre Jolivet     }
8628d58a37SPierre Jolivet   } else {
8728d58a37SPierre Jolivet     B    = *newmat;
889566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
8928d58a37SPierre Jolivet   }
90b147fbf3SStefano Zampini 
919566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
92b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
93b147fbf3SStefano Zampini     PetscInt          ncols;
94b147fbf3SStefano Zampini     const PetscInt    *row;
95b147fbf3SStefano Zampini     const PetscScalar *vals;
96b147fbf3SStefano Zampini 
979566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A,r,&ncols,&row,&vals));
989566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES));
99eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
100eb1ec7c1SStefano Zampini     if (A->hermitian) {
101eb1ec7c1SStefano Zampini       PetscInt i;
102eb1ec7c1SStefano Zampini       for (i = 0; i < ncols; i++) {
1039566063dSJacob Faibussowitsch         PetscCall(MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES));
104eb1ec7c1SStefano Zampini       }
105eb1ec7c1SStefano Zampini     } else {
1069566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES));
107eb1ec7c1SStefano Zampini     }
108eb1ec7c1SStefano Zampini #else
1099566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES));
110eb1ec7c1SStefano Zampini #endif
1119566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A,r,&ncols,&row,&vals));
112b147fbf3SStefano Zampini   }
1139566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
1159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
116b147fbf3SStefano Zampini 
117b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1189566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A,&B));
119b147fbf3SStefano Zampini   } else {
120b147fbf3SStefano Zampini     *newmat = B;
121b147fbf3SStefano Zampini   }
122b147fbf3SStefano Zampini   PetscFunctionReturn(0);
123b147fbf3SStefano Zampini }
124b147fbf3SStefano Zampini 
1257087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
126a30f8f8cSSatish Balay {
127f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
128a30f8f8cSSatish Balay 
129a30f8f8cSSatish Balay   PetscFunctionBegin;
1309566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1319566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
132a30f8f8cSSatish Balay   PetscFunctionReturn(0);
133a30f8f8cSSatish Balay }
134a30f8f8cSSatish Balay 
1357087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
136a30f8f8cSSatish Balay {
137f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
138a30f8f8cSSatish Balay 
139a30f8f8cSSatish Balay   PetscFunctionBegin;
1409566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1419566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
142a30f8f8cSSatish Balay   PetscFunctionReturn(0);
143a30f8f8cSSatish Balay }
144a30f8f8cSSatish Balay 
145d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
146a30f8f8cSSatish Balay   { \
147a30f8f8cSSatish Balay     brow = row/bs;  \
148a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
149a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
150a30f8f8cSSatish Balay     bcol = col/bs; \
151a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
152a30f8f8cSSatish Balay     low  = 0; high = nrow; \
153a30f8f8cSSatish Balay     while (high-low > 3) { \
154a30f8f8cSSatish Balay       t = (low+high)/2; \
155a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
156a30f8f8cSSatish Balay       else              low  = t; \
157a30f8f8cSSatish Balay     } \
158a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
159a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
160a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
161a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
162a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
163a30f8f8cSSatish Balay         else                    *bap  = value;  \
164a30f8f8cSSatish Balay         goto a_noinsert; \
165a30f8f8cSSatish Balay       } \
166a30f8f8cSSatish Balay     } \
167a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
1685f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
169fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
170a30f8f8cSSatish Balay     N = nrow++ - 1;  \
171a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
1729566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1)); \
1739566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \
1749566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap+bs2*_i,bs2));  \
175a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
176a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
177e56f5c9eSBarry Smith     A->nonzerostate++;\
178a30f8f8cSSatish Balay a_noinsert:; \
179a30f8f8cSSatish Balay     ailen[brow] = nrow; \
180a30f8f8cSSatish Balay   }
181e5e170daSBarry Smith 
182d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
183a30f8f8cSSatish Balay   { \
184a30f8f8cSSatish Balay     brow = row/bs;  \
185a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
186a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
187a30f8f8cSSatish Balay     bcol = col/bs; \
188a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
189a30f8f8cSSatish Balay     low  = 0; high = nrow; \
190a30f8f8cSSatish Balay     while (high-low > 3) { \
191a30f8f8cSSatish Balay       t = (low+high)/2; \
192a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
193a30f8f8cSSatish Balay       else              low  = t; \
194a30f8f8cSSatish Balay     } \
195a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
196a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
197a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
198a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
199a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
200a30f8f8cSSatish Balay         else                    *bap  = value;  \
201a30f8f8cSSatish Balay         goto b_noinsert; \
202a30f8f8cSSatish Balay       } \
203a30f8f8cSSatish Balay     } \
204a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2055f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
206fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
207a30f8f8cSSatish Balay     N = nrow++ - 1;  \
208a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2099566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1)); \
2109566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \
2119566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \
212a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
213a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
214e56f5c9eSBarry Smith     B->nonzerostate++;\
215a30f8f8cSSatish Balay b_noinsert:; \
216a30f8f8cSSatish Balay     bilen[brow] = nrow; \
217a30f8f8cSSatish Balay   }
218a30f8f8cSSatish Balay 
219a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
220476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
221a30f8f8cSSatish Balay */
222dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
223a30f8f8cSSatish Balay {
224a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
225a30f8f8cSSatish Balay   MatScalar      value;
226ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
2271302d50aSBarry Smith   PetscInt       i,j,row,col;
228d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
229d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
230d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
231a30f8f8cSSatish Balay 
232a30f8f8cSSatish Balay   /* Some Variables required in the macro */
233a30f8f8cSSatish Balay   Mat          A     = baij->A;
234a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2351302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
236a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
237a30f8f8cSSatish Balay 
238a30f8f8cSSatish Balay   Mat         B     = baij->B;
239a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2401302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
241a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
242a30f8f8cSSatish Balay 
2431302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2441302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
245a30f8f8cSSatish Balay   MatScalar *ap,*bap;
246a30f8f8cSSatish Balay 
247a30f8f8cSSatish Balay   /* for stash */
2480298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2490298fd71SBarry Smith   MatScalar *v_loc = NULL;
250a30f8f8cSSatish Balay 
251a30f8f8cSSatish Balay   PetscFunctionBegin;
252a30f8f8cSSatish Balay   if (!baij->donotstash) {
25359ffdab8SBarry Smith     if (n > baij->n_loc) {
2549566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
2559566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
2569566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n,&baij->in_loc));
2579566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n,&baij->v_loc));
25826fbe8dcSKarl Rupp 
25959ffdab8SBarry Smith       baij->n_loc = n;
26059ffdab8SBarry Smith     }
26159ffdab8SBarry Smith     in_loc = baij->in_loc;
26259ffdab8SBarry Smith     v_loc  = baij->v_loc;
263a30f8f8cSSatish Balay   }
264a30f8f8cSSatish Balay 
265a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
266a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2675f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1);
268a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
269a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
270a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
27101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
27201b2bd88SHong Zhang           if (a->ignore_ltriangular) {
27301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
27426fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
27501b2bd88SHong Zhang         }
276a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
277a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
278a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
279a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
280db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
281db4deed7SKarl Rupp           else             value = v[i+j*m];
282d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
2839566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
284a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2855f80ce2aSJacob Faibussowitsch         else PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1);
286a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
287a30f8f8cSSatish Balay           if (mat->was_assembled) {
288a30f8f8cSSatish Balay             if (!baij->colmap) {
2899566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
290a30f8f8cSSatish Balay             }
291a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2929566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap,in[j]/bs + 1,&col));
29371730473SSatish Balay             col  = col - 1;
294a30f8f8cSSatish Balay #else
29571730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
296a30f8f8cSSatish Balay #endif
297a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
2989566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
299a30f8f8cSSatish Balay               col  =  in[j];
300a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
301a30f8f8cSSatish Balay               B    = baij->B;
302a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
303a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
304a30f8f8cSSatish Balay               ba   = b->a;
30571730473SSatish Balay             } else col += in[j]%bs;
306a30f8f8cSSatish Balay           } else col = in[j];
307db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
308db4deed7SKarl Rupp           else             value = v[i+j*m];
309d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
3109566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
311a30f8f8cSSatish Balay         }
312a30f8f8cSSatish Balay       }
313a30f8f8cSSatish Balay     } else {  /* off processor entry */
3145f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
315a30f8f8cSSatish Balay       if (!baij->donotstash) {
3165080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
317a30f8f8cSSatish Balay         n_loc          = 0;
318a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
319f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
320a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
321a30f8f8cSSatish Balay           if (roworiented) {
322a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
323a30f8f8cSSatish Balay           } else {
324a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
325a30f8f8cSSatish Balay           }
326a30f8f8cSSatish Balay           n_loc++;
327a30f8f8cSSatish Balay         }
3289566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE));
329a30f8f8cSSatish Balay       }
330a30f8f8cSSatish Balay     }
331a30f8f8cSSatish Balay   }
332a30f8f8cSSatish Balay   PetscFunctionReturn(0);
333a30f8f8cSSatish Balay }
334a30f8f8cSSatish Balay 
3359fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
33636bd2089SBarry Smith {
33736bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
33836bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
33936bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
34036bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34136bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
34236bd2089SBarry Smith   const PetscScalar *value     = v;
34336bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
34436bd2089SBarry Smith 
34536bd2089SBarry Smith   PetscFunctionBegin;
34636bd2089SBarry Smith   if (col < row) {
34736bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
34836bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
34936bd2089SBarry Smith   }
35036bd2089SBarry Smith   rp   = aj + ai[row];
35136bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35236bd2089SBarry Smith   rmax = imax[row];
35336bd2089SBarry Smith   nrow = ailen[row];
35436bd2089SBarry Smith   value = v;
35536bd2089SBarry Smith   low   = 0;
35636bd2089SBarry Smith   high  = nrow;
35736bd2089SBarry Smith 
35836bd2089SBarry Smith   while (high-low > 7) {
35936bd2089SBarry Smith     t = (low+high)/2;
36036bd2089SBarry Smith     if (rp[t] > col) high = t;
36136bd2089SBarry Smith     else             low  = t;
36236bd2089SBarry Smith   }
36336bd2089SBarry Smith   for (i=low; i<high; i++) {
36436bd2089SBarry Smith     if (rp[i] > col) break;
36536bd2089SBarry Smith     if (rp[i] == col) {
36636bd2089SBarry Smith       bap = ap +  bs2*i;
36736bd2089SBarry Smith       if (roworiented) {
36836bd2089SBarry Smith         if (is == ADD_VALUES) {
36936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37036bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37136bd2089SBarry Smith               bap[jj] += *value++;
37236bd2089SBarry Smith             }
37336bd2089SBarry Smith           }
37436bd2089SBarry Smith         } else {
37536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37736bd2089SBarry Smith               bap[jj] = *value++;
37836bd2089SBarry Smith             }
37936bd2089SBarry Smith           }
38036bd2089SBarry Smith         }
38136bd2089SBarry Smith       } else {
38236bd2089SBarry Smith         if (is == ADD_VALUES) {
38336bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
38436bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38536bd2089SBarry Smith               *bap++ += *value++;
38636bd2089SBarry Smith             }
38736bd2089SBarry Smith           }
38836bd2089SBarry Smith         } else {
38936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39136bd2089SBarry Smith               *bap++  = *value++;
39236bd2089SBarry Smith             }
39336bd2089SBarry Smith           }
39436bd2089SBarry Smith         }
39536bd2089SBarry Smith       }
39636bd2089SBarry Smith       goto noinsert2;
39736bd2089SBarry Smith     }
39836bd2089SBarry Smith   }
39936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4005f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
40136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40236bd2089SBarry Smith   N = nrow++ - 1; high++;
40336bd2089SBarry Smith   /* shift up all the later entries in this row */
4049566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1));
4059566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1)));
40636bd2089SBarry Smith   rp[i] = col;
40736bd2089SBarry Smith   bap   = ap +  bs2*i;
40836bd2089SBarry Smith   if (roworiented) {
40936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
41136bd2089SBarry Smith         bap[jj] = *value++;
41236bd2089SBarry Smith       }
41336bd2089SBarry Smith     }
41436bd2089SBarry Smith   } else {
41536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
41736bd2089SBarry Smith         *bap++ = *value++;
41836bd2089SBarry Smith       }
41936bd2089SBarry Smith     }
42036bd2089SBarry Smith   }
42136bd2089SBarry Smith   noinsert2:;
42236bd2089SBarry Smith   ailen[row] = nrow;
42336bd2089SBarry Smith   PetscFunctionReturn(0);
42436bd2089SBarry Smith }
42536bd2089SBarry Smith 
42636bd2089SBarry Smith /*
42736bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
42836bd2089SBarry Smith */
4299fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
43036bd2089SBarry Smith {
43136bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
43236bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
43336bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
43436bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
43536bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
43636bd2089SBarry Smith   const PetscScalar *value     = v;
43736bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
43836bd2089SBarry Smith 
43936bd2089SBarry Smith   PetscFunctionBegin;
44036bd2089SBarry Smith   rp   = aj + ai[row];
44136bd2089SBarry Smith   ap   = aa + bs2*ai[row];
44236bd2089SBarry Smith   rmax = imax[row];
44336bd2089SBarry Smith   nrow = ailen[row];
44436bd2089SBarry Smith   low  = 0;
44536bd2089SBarry Smith   high = nrow;
44636bd2089SBarry Smith   value = v;
44736bd2089SBarry Smith   while (high-low > 7) {
44836bd2089SBarry Smith     t = (low+high)/2;
44936bd2089SBarry Smith     if (rp[t] > col) high = t;
45036bd2089SBarry Smith     else             low  = t;
45136bd2089SBarry Smith   }
45236bd2089SBarry Smith   for (i=low; i<high; i++) {
45336bd2089SBarry Smith     if (rp[i] > col) break;
45436bd2089SBarry Smith     if (rp[i] == col) {
45536bd2089SBarry Smith       bap = ap +  bs2*i;
45636bd2089SBarry Smith       if (roworiented) {
45736bd2089SBarry Smith         if (is == ADD_VALUES) {
45836bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
45936bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46036bd2089SBarry Smith               bap[jj] += *value++;
46136bd2089SBarry Smith             }
46236bd2089SBarry Smith           }
46336bd2089SBarry Smith         } else {
46436bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
46536bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46636bd2089SBarry Smith               bap[jj] = *value++;
46736bd2089SBarry Smith             }
46836bd2089SBarry Smith           }
46936bd2089SBarry Smith         }
47036bd2089SBarry Smith       } else {
47136bd2089SBarry Smith         if (is == ADD_VALUES) {
47236bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
47336bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
47436bd2089SBarry Smith               bap[jj] += value[jj];
47536bd2089SBarry Smith             }
47636bd2089SBarry Smith             bap += bs;
47736bd2089SBarry Smith           }
47836bd2089SBarry Smith         } else {
47936bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48136bd2089SBarry Smith               bap[jj]  = value[jj];
48236bd2089SBarry Smith             }
48336bd2089SBarry Smith             bap += bs;
48436bd2089SBarry Smith           }
48536bd2089SBarry Smith         }
48636bd2089SBarry Smith       }
48736bd2089SBarry Smith       goto noinsert2;
48836bd2089SBarry Smith     }
48936bd2089SBarry Smith   }
49036bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4915f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
49236bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
49336bd2089SBarry Smith   N = nrow++ - 1; high++;
49436bd2089SBarry Smith   /* shift up all the later entries in this row */
4959566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1));
4969566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1)));
49736bd2089SBarry Smith   rp[i] = col;
49836bd2089SBarry Smith   bap   = ap +  bs2*i;
49936bd2089SBarry Smith   if (roworiented) {
50036bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50136bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
50236bd2089SBarry Smith         bap[jj] = *value++;
50336bd2089SBarry Smith       }
50436bd2089SBarry Smith     }
50536bd2089SBarry Smith   } else {
50636bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50736bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
50836bd2089SBarry Smith         *bap++ = *value++;
50936bd2089SBarry Smith       }
51036bd2089SBarry Smith     }
51136bd2089SBarry Smith   }
51236bd2089SBarry Smith   noinsert2:;
51336bd2089SBarry Smith   ailen[row] = nrow;
51436bd2089SBarry Smith   PetscFunctionReturn(0);
51536bd2089SBarry Smith }
51636bd2089SBarry Smith 
51736bd2089SBarry Smith /*
51836bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
51936bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
52036bd2089SBarry Smith */
521dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
522a30f8f8cSSatish Balay {
5230880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
524f15d580aSBarry Smith   const MatScalar *value;
525f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
526ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
527899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
528476417e5SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
529476417e5SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5300880e062SHong Zhang 
531a30f8f8cSSatish Balay   PetscFunctionBegin;
5320880e062SHong Zhang   if (!barray) {
5339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2,&barray));
5340880e062SHong Zhang     baij->barray = barray;
5350880e062SHong Zhang   }
5360880e062SHong Zhang 
5370880e062SHong Zhang   if (roworiented) {
5380880e062SHong Zhang     stepval = (n-1)*bs;
5390880e062SHong Zhang   } else {
5400880e062SHong Zhang     stepval = (m-1)*bs;
5410880e062SHong Zhang   }
5420880e062SHong Zhang   for (i=0; i<m; i++) {
5430880e062SHong Zhang     if (im[i] < 0) continue;
5446bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1);
5450880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5460880e062SHong Zhang       row = im[i] - rstart;
5470880e062SHong Zhang       for (j=0; j<n; j++) {
548f3f98c53SJed Brown         if (im[i] > in[j]) {
549f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
550e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
551f3f98c53SJed Brown         }
5520880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5530880e062SHong Zhang         if ((roworiented) && (n == 1)) {
554f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5550880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
556f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5570880e062SHong Zhang         } else { /* Here a copy is required */
5580880e062SHong Zhang           if (roworiented) {
5590880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5600880e062SHong Zhang           } else {
5610880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5620880e062SHong Zhang           }
5630880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5640880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5650880e062SHong Zhang               *barray++ = *value++;
5660880e062SHong Zhang             }
5670880e062SHong Zhang           }
5680880e062SHong Zhang           barray -=bs2;
5690880e062SHong Zhang         }
5700880e062SHong Zhang 
5710880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5720880e062SHong Zhang           col  = in[j] - cstart;
5739566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]));
57426fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
5756bdcaf15SBarry Smith         else PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1);
5760880e062SHong Zhang         else {
5770880e062SHong Zhang           if (mat->was_assembled) {
5780880e062SHong Zhang             if (!baij->colmap) {
5799566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
5800880e062SHong Zhang             }
5810880e062SHong Zhang 
5822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5830880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5841302d50aSBarry Smith             { PetscInt data;
5859566063dSJacob Faibussowitsch               PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data));
58608401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5870880e062SHong Zhang             }
5880880e062SHong Zhang #else
58908401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5900880e062SHong Zhang #endif
5910880e062SHong Zhang #endif
5920880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5939566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col));
5940880e062SHong Zhang             col  = (col - 1)/bs;
5950880e062SHong Zhang #else
5960880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5970880e062SHong Zhang #endif
5980880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
5999566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
6000880e062SHong Zhang               col  = in[j];
6010880e062SHong Zhang             }
60226fbe8dcSKarl Rupp           } else col = in[j];
6039566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]));
6040880e062SHong Zhang         }
6050880e062SHong Zhang       }
6060880e062SHong Zhang     } else {
6075f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6080880e062SHong Zhang       if (!baij->donotstash) {
6090880e062SHong Zhang         if (roworiented) {
6109566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
6110880e062SHong Zhang         } else {
6129566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
6130880e062SHong Zhang         }
6140880e062SHong Zhang       }
6150880e062SHong Zhang     }
6160880e062SHong Zhang   }
6170880e062SHong Zhang   PetscFunctionReturn(0);
618a30f8f8cSSatish Balay }
619a30f8f8cSSatish Balay 
6201302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
621a30f8f8cSSatish Balay {
622f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
623d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
624d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
625a30f8f8cSSatish Balay 
626a30f8f8cSSatish Balay   PetscFunctionBegin;
627a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
62854c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
62954c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1);
630a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
631a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
632a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
63354c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
63454c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1);
635a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
636a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
6379566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j));
638a30f8f8cSSatish Balay         } else {
639a30f8f8cSSatish Balay           if (!baij->colmap) {
6409566063dSJacob Faibussowitsch             PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
641a30f8f8cSSatish Balay           }
642a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
6439566063dSJacob Faibussowitsch           PetscCall(PetscTableFind(baij->colmap,idxn[j]/bs+1,&data));
644a30f8f8cSSatish Balay           data--;
645a30f8f8cSSatish Balay #else
646a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
647a30f8f8cSSatish Balay #endif
648a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
649a30f8f8cSSatish Balay           else {
650a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
6519566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j));
652a30f8f8cSSatish Balay           }
653a30f8f8cSSatish Balay         }
654a30f8f8cSSatish Balay       }
655f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
656a30f8f8cSSatish Balay   }
657a30f8f8cSSatish Balay   PetscFunctionReturn(0);
658a30f8f8cSSatish Balay }
659a30f8f8cSSatish Balay 
660dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
661a30f8f8cSSatish Balay {
662a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
663a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
664a30f8f8cSSatish Balay 
665a30f8f8cSSatish Balay   PetscFunctionBegin;
666a30f8f8cSSatish Balay   if (baij->size == 1) {
6679566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A,type,norm));
668a30f8f8cSSatish Balay   } else {
669a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
6709566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2,&lnorm2));
6719566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A,type,lnorm2));
672a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
6739566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B,type,lnorm2));
674a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
6751c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat)));
6768f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
6779566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
6780b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6790b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6800b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6810b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
682899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
683d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6840b8dc8d2SHong Zhang       MatScalar    *v;
6850b8dc8d2SHong Zhang 
6869566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2));
6879566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(rsum,mat->cmap->N));
6880b8dc8d2SHong Zhang       /* Amat */
6890b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6900b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6910b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6920b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6930b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6940b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6950b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6960b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6970b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6980b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6990b8dc8d2SHong Zhang               /* non-diagonal block */
7000b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
7010b8dc8d2SHong Zhang             }
7020b8dc8d2SHong Zhang           }
7030b8dc8d2SHong Zhang         }
7049566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz*bs*bs));
7050b8dc8d2SHong Zhang       }
7060b8dc8d2SHong Zhang       /* Bmat */
7070b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7080b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7090b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7100b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7110b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7120b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7130b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7140b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7150b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7160b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7170b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7180b8dc8d2SHong Zhang             }
7190b8dc8d2SHong Zhang           }
7200b8dc8d2SHong Zhang         }
7219566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz*bs*bs));
7220b8dc8d2SHong Zhang       }
7231c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat)));
7240b8dc8d2SHong Zhang       *norm = 0.0;
725d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7260b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7270b8dc8d2SHong Zhang       }
7289566063dSJacob Faibussowitsch       PetscCall(PetscFree2(rsum,rsum2));
729f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
730a30f8f8cSSatish Balay   }
731a30f8f8cSSatish Balay   PetscFunctionReturn(0);
732a30f8f8cSSatish Balay }
733a30f8f8cSSatish Balay 
734dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
735a30f8f8cSSatish Balay {
736a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
7371302d50aSBarry Smith   PetscInt       nstash,reallocs;
738a30f8f8cSSatish Balay 
739a30f8f8cSSatish Balay   PetscFunctionBegin;
74026fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
741a30f8f8cSSatish Balay 
7429566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range));
7439566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs));
7449566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs));
7459566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat,"Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs));
7469566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs));
7479566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat,"Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs));
748a30f8f8cSSatish Balay   PetscFunctionReturn(0);
749a30f8f8cSSatish Balay }
750a30f8f8cSSatish Balay 
751dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
752a30f8f8cSSatish Balay {
753a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
754a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
75513f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
756e44c0bd4SBarry Smith   PetscInt       *row,*col;
757ace3abfcSBarry Smith   PetscBool      other_disassembled;
75813f74950SBarry Smith   PetscMPIInt    n;
759ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
760a30f8f8cSSatish Balay   MatScalar      *val;
761a30f8f8cSSatish Balay 
76291c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
763a30f8f8cSSatish Balay   PetscFunctionBegin;
7644cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
765a30f8f8cSSatish Balay     while (1) {
7669566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg));
767a30f8f8cSSatish Balay       if (!flg) break;
768a30f8f8cSSatish Balay 
769a30f8f8cSSatish Balay       for (i=0; i<n;) {
770a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
77126fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
77226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
77326fbe8dcSKarl Rupp         }
774a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
775a30f8f8cSSatish Balay         else       ncols = n-i;
776a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7779566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode));
778a30f8f8cSSatish Balay         i    = j;
779a30f8f8cSSatish Balay       }
780a30f8f8cSSatish Balay     }
7819566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
782a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
783a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
784a30f8f8cSSatish Balay        restore the original flags */
785a30f8f8cSSatish Balay     r1 = baij->roworiented;
786a30f8f8cSSatish Balay     r2 = a->roworiented;
78791c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
78826fbe8dcSKarl Rupp 
789a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
790a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
79126fbe8dcSKarl Rupp 
79291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
793a30f8f8cSSatish Balay     while (1) {
7949566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg));
795a30f8f8cSSatish Balay       if (!flg) break;
796a30f8f8cSSatish Balay 
797a30f8f8cSSatish Balay       for (i=0; i<n;) {
798a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
79926fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
80026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
80126fbe8dcSKarl Rupp         }
802a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
803a30f8f8cSSatish Balay         else       ncols = n-i;
8049566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode));
805a30f8f8cSSatish Balay         i    = j;
806a30f8f8cSSatish Balay       }
807a30f8f8cSSatish Balay     }
8089566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
80926fbe8dcSKarl Rupp 
810a30f8f8cSSatish Balay     baij->roworiented = r1;
811a30f8f8cSSatish Balay     a->roworiented    = r2;
81226fbe8dcSKarl Rupp 
81391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
814a30f8f8cSSatish Balay   }
815a30f8f8cSSatish Balay 
8169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A,mode));
8179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A,mode));
818a30f8f8cSSatish Balay 
819a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
8206aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
821a30f8f8cSSatish Balay   /*
822a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
823a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
824a30f8f8cSSatish Balay   */
825a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
8261c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat)));
827a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
8289566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPISBAIJ(mat));
829a30f8f8cSSatish Balay     }
830a30f8f8cSSatish Balay   }
831a30f8f8cSSatish Balay 
832a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
8339566063dSJacob Faibussowitsch     PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */
834a30f8f8cSSatish Balay   }
8359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B,mode));
8369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B,mode));
837a30f8f8cSSatish Balay 
8389566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues,baij->rowindices));
83926fbe8dcSKarl Rupp 
840f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8414f9cfa9eSBarry Smith 
8424f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8434f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
844e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
8451c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat)));
846e56f5c9eSBarry Smith   }
847a30f8f8cSSatish Balay   PetscFunctionReturn(0);
848a30f8f8cSSatish Balay }
849a30f8f8cSSatish Balay 
850dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8519804daf3SBarry Smith #include <petscdraw.h>
8526849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
853a30f8f8cSSatish Balay {
854a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
855d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8567da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
857ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
858b0a32e0cSBarry Smith   PetscViewer       sviewer;
859f3ef73ceSBarry Smith   PetscViewerFormat format;
860a30f8f8cSSatish Balay 
861a30f8f8cSSatish Balay   PetscFunctionBegin;
8629566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
8639566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
86432077d6dSBarry Smith   if (iascii) {
8659566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer,&format));
866456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
867a30f8f8cSSatish Balay       MatInfo info;
8689566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank));
8699566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat,MAT_LOCAL,&info));
8709566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
8719566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory));
8729566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A,MAT_LOCAL,&info));
8739566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used));
8749566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B,MAT_LOCAL,&info));
8759566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used));
8769566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
8779566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
8789566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n"));
8799566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx,viewer));
880a30f8f8cSSatish Balay       PetscFunctionReturn(0);
881fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
8829566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"  block size is %" PetscInt_FMT "\n",bs));
883a30f8f8cSSatish Balay       PetscFunctionReturn(0);
884c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
885c1490034SHong Zhang       PetscFunctionReturn(0);
886a30f8f8cSSatish Balay     }
887a30f8f8cSSatish Balay   }
888a30f8f8cSSatish Balay 
889a30f8f8cSSatish Balay   if (isdraw) {
890b0a32e0cSBarry Smith     PetscDraw draw;
891ace3abfcSBarry Smith     PetscBool isnull;
8929566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw));
8939566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw,&isnull));
89445f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
895a30f8f8cSSatish Balay   }
896a30f8f8cSSatish Balay 
8977da1fb6eSBarry Smith   {
898a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
899a30f8f8cSSatish Balay     Mat          A;
90065d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
90165d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
902d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
903a30f8f8cSSatish Balay     MatScalar    *a;
9043e219373SBarry Smith     const char   *matname;
905a30f8f8cSSatish Balay 
906f204ca49SKris Buschelman     /* Should this be the same type as mat? */
9079566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A));
908dd400576SPatrick Sanan     if (rank == 0) {
9099566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A,M,N,M,N));
910a30f8f8cSSatish Balay     } else {
9119566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A,0,0,M,N));
912a30f8f8cSSatish Balay     }
9139566063dSJacob Faibussowitsch     PetscCall(MatSetType(A,MATMPISBAIJ));
9149566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL));
9159566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE));
9169566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A));
917a30f8f8cSSatish Balay 
918a30f8f8cSSatish Balay     /* copy over the A part */
91965d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
920a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
9219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs,&rvals));
922a30f8f8cSSatish Balay 
923a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
924e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
92526fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
926a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
927e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
928a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
9299566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES));
93026fbe8dcSKarl Rupp           col++;
93126fbe8dcSKarl Rupp           a += bs;
932a30f8f8cSSatish Balay         }
933a30f8f8cSSatish Balay       }
934a30f8f8cSSatish Balay     }
935a30f8f8cSSatish Balay     /* copy over the B part */
93665d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
93765d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
938a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
939e9f7bc9eSHong Zhang 
940e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
94126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
942a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
943a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
944a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
9459566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES));
94626fbe8dcSKarl Rupp           col++;
94726fbe8dcSKarl Rupp           a += bs;
948a30f8f8cSSatish Balay         }
949a30f8f8cSSatish Balay       }
950a30f8f8cSSatish Balay     }
9519566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
9529566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
9539566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
954a30f8f8cSSatish Balay     /*
955a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
956b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
957a30f8f8cSSatish Balay     */
9589566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer));
9599566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)mat,&matname));
960dd400576SPatrick Sanan     if (rank == 0) {
9619566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname));
9629566063dSJacob Faibussowitsch       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer));
963a30f8f8cSSatish Balay     }
9649566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer));
9659566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
9669566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
967a30f8f8cSSatish Balay   }
968a30f8f8cSSatish Balay   PetscFunctionReturn(0);
969a30f8f8cSSatish Balay }
970a30f8f8cSSatish Balay 
971618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
972618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
973d1654148SHong Zhang 
974dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
975a30f8f8cSSatish Balay {
976ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
977a30f8f8cSSatish Balay 
978a30f8f8cSSatish Balay   PetscFunctionBegin;
9799566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
9809566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
9819566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket));
9829566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
983d1654148SHong Zhang   if (iascii || isdraw || issocket) {
9849566063dSJacob Faibussowitsch     PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer));
985*1baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat,viewer));
986a30f8f8cSSatish Balay   PetscFunctionReturn(0);
987a30f8f8cSSatish Balay }
988a30f8f8cSSatish Balay 
989dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
990a30f8f8cSSatish Balay {
991a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
992a30f8f8cSSatish Balay 
993a30f8f8cSSatish Balay   PetscFunctionBegin;
994a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
995c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N);
996a30f8f8cSSatish Balay #endif
9979566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->stash));
9989566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->bstash));
9999566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->A));
10009566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->B));
1001a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
10029566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&baij->colmap));
1003a30f8f8cSSatish Balay #else
10049566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->colmap));
1005a30f8f8cSSatish Balay #endif
10069566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->garray));
10079566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->lvec));
10089566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->Mvctx));
10099566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec0));
10109566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec0b));
10119566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1));
10129566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1a));
10139566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1b));
10149566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->sMvctx));
10159566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues,baij->rowindices));
10169566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->barray));
10179566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->hd));
10189566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->diag));
10199566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->bb1));
10209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->xx1));
1021ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
10229566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->setvaluescopy));
1023a30f8f8cSSatish Balay #endif
10249566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->in_loc));
10259566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->v_loc));
10269566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->rangebs));
10279566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
1028901853e0SKris Buschelman 
10299566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL));
10309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL));
10319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL));
10329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL));
10339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL));
10346214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
10359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL));
10366214f412SHong Zhang #endif
1037d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
10389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL));
1039d24d4204SJose E. Roman #endif
10409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL));
10419566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL));
1042a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1043a30f8f8cSSatish Balay }
1044a30f8f8cSSatish Balay 
1045547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1046547795f9SHong Zhang {
1047547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1048eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
10496de40e93SBarry Smith   PetscScalar       *from;
10506de40e93SBarry Smith   const PetscScalar *x;
1051547795f9SHong Zhang 
1052547795f9SHong Zhang   PetscFunctionBegin;
1053547795f9SHong Zhang   /* diagonal part */
10549566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A,xx,a->slvec1a));
10559566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b,0.0));
1056547795f9SHong Zhang 
1057547795f9SHong Zhang   /* subdiagonal part */
10585f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose,PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s",((PetscObject)a->B)->type_name);
10599566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b));
1060547795f9SHong Zhang 
1061547795f9SHong Zhang   /* copy x into the vec slvec0 */
10629566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0,&from));
10639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
1064547795f9SHong Zhang 
10659566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from,x,bs*mbs));
10669566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0,&from));
10679566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
1068547795f9SHong Zhang 
10699566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
10709566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
1071547795f9SHong Zhang   /* supperdiagonal part */
10729566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy));
1073547795f9SHong Zhang   PetscFunctionReturn(0);
1074547795f9SHong Zhang }
1075547795f9SHong Zhang 
1076dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1077a9d4b620SHong Zhang {
1078a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1079eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1080d9ca1df4SBarry Smith   PetscScalar       *from;
1081d9ca1df4SBarry Smith   const PetscScalar *x;
1082a9d4b620SHong Zhang 
1083a9d4b620SHong Zhang   PetscFunctionBegin;
1084a9d4b620SHong Zhang   /* diagonal part */
10859566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A,xx,a->slvec1a));
10869566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b,0.0));
1087a9d4b620SHong Zhang 
1088a9d4b620SHong Zhang   /* subdiagonal part */
10899566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->slvec0b));
1090fc165ae2SBarry Smith 
1091a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10929566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0,&from));
10939566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
1094a9d4b620SHong Zhang 
10959566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from,x,bs*mbs));
10969566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0,&from));
10979566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
1098fc165ae2SBarry Smith 
10999566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
1101a9d4b620SHong Zhang   /* supperdiagonal part */
11029566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy));
1103a9d4b620SHong Zhang   PetscFunctionReturn(0);
1104a9d4b620SHong Zhang }
1105a9d4b620SHong Zhang 
1106eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz)
1107eb1ec7c1SStefano Zampini {
1108eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1109eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1110eb1ec7c1SStefano Zampini   PetscScalar       *from,zero=0.0;
1111eb1ec7c1SStefano Zampini   const PetscScalar *x;
1112eb1ec7c1SStefano Zampini 
1113eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1114eb1ec7c1SStefano Zampini   /* diagonal part */
11159566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a));
11169566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b,zero));
1117eb1ec7c1SStefano Zampini 
1118eb1ec7c1SStefano Zampini   /* subdiagonal part */
11195f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose,PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s",((PetscObject)a->B)->type_name);
11209566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b));
1121eb1ec7c1SStefano Zampini 
1122eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
11239566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0,&from));
11249566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
11259566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from,x,bs*mbs));
11269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0,&from));
1127eb1ec7c1SStefano Zampini 
11289566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
11299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
11309566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
1131eb1ec7c1SStefano Zampini 
1132eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11339566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz));
1134eb1ec7c1SStefano Zampini   PetscFunctionReturn(0);
1135eb1ec7c1SStefano Zampini }
1136eb1ec7c1SStefano Zampini 
1137dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1138a30f8f8cSSatish Balay {
1139de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1140d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1141d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1142d9ca1df4SBarry Smith   const PetscScalar *x;
1143a9d4b620SHong Zhang 
1144a9d4b620SHong Zhang   PetscFunctionBegin;
1145a9d4b620SHong Zhang   /* diagonal part */
11469566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a));
11479566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b,zero));
1148a9d4b620SHong Zhang 
1149a9d4b620SHong Zhang   /* subdiagonal part */
11509566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->slvec0b));
1151a9d4b620SHong Zhang 
1152a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11539566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0,&from));
11549566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
11559566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from,x,bs*mbs));
11569566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0,&from));
1157a9d4b620SHong Zhang 
11589566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
11599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
11609566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
1161a9d4b620SHong Zhang 
1162a9d4b620SHong Zhang   /* supperdiagonal part */
11639566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz));
1164a9d4b620SHong Zhang   PetscFunctionReturn(0);
1165a9d4b620SHong Zhang }
1166a9d4b620SHong Zhang 
1167a30f8f8cSSatish Balay /*
1168a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1169a30f8f8cSSatish Balay    diagonal block
1170a30f8f8cSSatish Balay */
1171dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1172a30f8f8cSSatish Balay {
1173a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1174a30f8f8cSSatish Balay 
1175a30f8f8cSSatish Balay   PetscFunctionBegin;
117608401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11779566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A,v));
1178a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1179a30f8f8cSSatish Balay }
1180a30f8f8cSSatish Balay 
1181f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1182a30f8f8cSSatish Balay {
1183a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1184a30f8f8cSSatish Balay 
1185a30f8f8cSSatish Balay   PetscFunctionBegin;
11869566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A,aa));
11879566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B,aa));
1188a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1189a30f8f8cSSatish Balay }
1190a30f8f8cSSatish Balay 
11911302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1192a30f8f8cSSatish Balay {
1193d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data;
1194d0d4cfc2SHong Zhang   PetscScalar  *vworkA,*vworkB,**pvA,**pvB,*v_p;
1195d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1196d0f46423SBarry Smith   PetscInt     nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1197899cda47SBarry Smith   PetscInt    *cmap,*idx_p,cstart = mat->rstartbs;
1198d0d4cfc2SHong Zhang 
1199a30f8f8cSSatish Balay   PetscFunctionBegin;
12005f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1201d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1202d0d4cfc2SHong Zhang 
1203d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1204d0d4cfc2SHong Zhang     /*
1205d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1206d0d4cfc2SHong Zhang     */
1207d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1208d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1209d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1210d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1211d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
121226fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1213d0d4cfc2SHong Zhang     }
12149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices));
1215d0d4cfc2SHong Zhang   }
1216d0d4cfc2SHong Zhang 
12175f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1218d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1219d0d4cfc2SHong Zhang 
1220d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1221f4259b30SLisandro Dalcin   if (!v)   {pvA = NULL; pvB = NULL;}
1222f4259b30SLisandro Dalcin   if (!idx) {pcA = NULL; if (!v) pcB = NULL;}
12239566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA));
12249566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB));
1225d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1226d0d4cfc2SHong Zhang 
1227d0d4cfc2SHong Zhang   cmap = mat->garray;
1228d0d4cfc2SHong Zhang   if (v  || idx) {
1229d0d4cfc2SHong Zhang     if (nztot) {
1230d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1231d0d4cfc2SHong Zhang       PetscInt imark = -1;
1232d0d4cfc2SHong Zhang       if (v) {
1233d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1234d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1235d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1236d0d4cfc2SHong Zhang           else break;
1237d0d4cfc2SHong Zhang         }
1238d0d4cfc2SHong Zhang         imark = i;
1239d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1240d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1241d0d4cfc2SHong Zhang       }
1242d0d4cfc2SHong Zhang       if (idx) {
1243d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1244d0d4cfc2SHong Zhang         if (imark > -1) {
1245d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1246d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1247d0d4cfc2SHong Zhang           }
1248d0d4cfc2SHong Zhang         } else {
1249d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
125026fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1251d0d4cfc2SHong Zhang             else break;
1252d0d4cfc2SHong Zhang           }
1253d0d4cfc2SHong Zhang           imark = i;
1254d0d4cfc2SHong Zhang         }
1255d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1256d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1257d0d4cfc2SHong Zhang       }
1258d0d4cfc2SHong Zhang     } else {
1259f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1260f4259b30SLisandro Dalcin       if (v)   *v   = NULL;
1261d0d4cfc2SHong Zhang     }
1262d0d4cfc2SHong Zhang   }
1263d0d4cfc2SHong Zhang   *nz  = nztot;
12649566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA));
12659566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB));
1266a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1267a30f8f8cSSatish Balay }
1268a30f8f8cSSatish Balay 
12691302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1270a30f8f8cSSatish Balay {
1271a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1272a30f8f8cSSatish Balay 
1273a30f8f8cSSatish Balay   PetscFunctionBegin;
12745f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1275a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1276a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1277a30f8f8cSSatish Balay }
1278a30f8f8cSSatish Balay 
1279d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1280d0d4cfc2SHong Zhang {
1281d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1282d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1283d0d4cfc2SHong Zhang 
1284d0d4cfc2SHong Zhang   PetscFunctionBegin;
1285d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1286d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1287d0d4cfc2SHong Zhang }
1288d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1289d0d4cfc2SHong Zhang {
1290d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1291d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1292d0d4cfc2SHong Zhang 
1293d0d4cfc2SHong Zhang   PetscFunctionBegin;
1294d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1295d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1296d0d4cfc2SHong Zhang }
1297d0d4cfc2SHong Zhang 
12982726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
12992726fb6dSPierre Jolivet {
13005f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
13015f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
13022726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data;
13032726fb6dSPierre Jolivet 
13049566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
13059566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
13065f80ce2aSJacob Faibussowitsch   }
13072726fb6dSPierre Jolivet   PetscFunctionReturn(0);
13082726fb6dSPierre Jolivet }
13092726fb6dSPierre Jolivet 
131099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
131199cafbc1SBarry Smith {
131299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
131399cafbc1SBarry Smith 
131499cafbc1SBarry Smith   PetscFunctionBegin;
13159566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
13169566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
131799cafbc1SBarry Smith   PetscFunctionReturn(0);
131899cafbc1SBarry Smith }
131999cafbc1SBarry Smith 
132099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
132199cafbc1SBarry Smith {
132299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
132399cafbc1SBarry Smith 
132499cafbc1SBarry Smith   PetscFunctionBegin;
13259566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
13269566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
132799cafbc1SBarry Smith   PetscFunctionReturn(0);
132899cafbc1SBarry Smith }
132999cafbc1SBarry Smith 
13307dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
133136032a97SHong Zhang    Input: isrow       - distributed(parallel),
133236032a97SHong Zhang           iscol_local - locally owned (seq)
133336032a97SHong Zhang */
133436032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13358f46ffcaSHong Zhang {
13368f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13378f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
133836032a97SHong Zhang 
133936032a97SHong Zhang   PetscFunctionBegin;
13409566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow,&sz1));
13419566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local,&sz2));
13421098a8e8SHong Zhang   if (sz1 > sz2) {
13431098a8e8SHong Zhang     *flg = PETSC_FALSE;
13441098a8e8SHong Zhang     PetscFunctionReturn(0);
13451098a8e8SHong Zhang   }
13468f46ffcaSHong Zhang 
13479566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow,&ptr1));
13489566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local,&ptr2));
13498f46ffcaSHong Zhang 
13509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1,&a1));
13519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2,&a2));
13529566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1,ptr1,sz1));
13539566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2,ptr2,sz2));
13549566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1,a1));
13559566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2,a2));
13568f46ffcaSHong Zhang 
13578f46ffcaSHong Zhang   nmatch=0;
13588f46ffcaSHong Zhang   k     = 0;
13598f46ffcaSHong Zhang   for (i=0; i<sz1; i++) {
13608f46ffcaSHong Zhang     for (j=k; j<sz2; j++) {
13618f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13628f46ffcaSHong Zhang         k = j; nmatch++;
13638f46ffcaSHong Zhang         break;
13648f46ffcaSHong Zhang       }
13658f46ffcaSHong Zhang     }
13668f46ffcaSHong Zhang   }
13679566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow,&ptr1));
13689566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local,&ptr2));
13699566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13709566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13711098a8e8SHong Zhang   if (nmatch < sz1) {
13721098a8e8SHong Zhang     *flg = PETSC_FALSE;
13731098a8e8SHong Zhang   } else {
13741098a8e8SHong Zhang     *flg = PETSC_TRUE;
13751098a8e8SHong Zhang   }
137636032a97SHong Zhang   PetscFunctionReturn(0);
13778f46ffcaSHong Zhang }
137836032a97SHong Zhang 
13797dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
138036032a97SHong Zhang {
138136032a97SHong Zhang   IS             iscol_local;
138236032a97SHong Zhang   PetscInt       csize;
138336032a97SHong Zhang   PetscBool      isequal;
138436032a97SHong Zhang 
138536032a97SHong Zhang   PetscFunctionBegin;
13869566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol,&csize));
138736032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13889566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local));
13895f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
139036032a97SHong Zhang   } else {
1391068661f9SToby Isaac     PetscBool issorted;
1392068661f9SToby Isaac 
13939566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol,&iscol_local));
13949566063dSJacob Faibussowitsch     PetscCall(ISEqual_private(isrow,iscol_local,&isequal));
13959566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
13965f80ce2aSJacob Faibussowitsch     PetscCheck(isequal && issorted,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow and be sorted");
13978f46ffcaSHong Zhang   }
13988f46ffcaSHong Zhang 
13997dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
14009566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat));
14018f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
14029566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local));
14039566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
14048f46ffcaSHong Zhang   }
14058f46ffcaSHong Zhang   PetscFunctionReturn(0);
14068f46ffcaSHong Zhang }
14078f46ffcaSHong Zhang 
1408dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1409a30f8f8cSSatish Balay {
1410a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1411a30f8f8cSSatish Balay 
1412a30f8f8cSSatish Balay   PetscFunctionBegin;
14139566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14149566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
1415a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1416a30f8f8cSSatish Balay }
1417a30f8f8cSSatish Balay 
1418dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1419a30f8f8cSSatish Balay {
1420a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1421a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
14223966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
1423a30f8f8cSSatish Balay 
1424a30f8f8cSSatish Balay   PetscFunctionBegin;
1425d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
142626fbe8dcSKarl Rupp 
14279566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A,MAT_LOCAL,info));
142826fbe8dcSKarl Rupp 
1429a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1430a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
143126fbe8dcSKarl Rupp 
14329566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B,MAT_LOCAL,info));
143326fbe8dcSKarl Rupp 
1434a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1435a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1436a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1437a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1438a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1439a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1440a30f8f8cSSatish Balay     info->memory       = isend[3];
1441a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1442a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14431c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin)));
144426fbe8dcSKarl Rupp 
1445a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1446a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1447a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1448a30f8f8cSSatish Balay     info->memory       = irecv[3];
1449a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1450a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14511c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin)));
145226fbe8dcSKarl Rupp 
1453a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1454a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1455a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1456a30f8f8cSSatish Balay     info->memory       = irecv[3];
1457a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
145898921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1459a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1460a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1461a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1462a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1463a30f8f8cSSatish Balay }
1464a30f8f8cSSatish Balay 
1465ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1466a30f8f8cSSatish Balay {
1467a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1468d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1469a30f8f8cSSatish Balay 
1470a30f8f8cSSatish Balay   PetscFunctionBegin;
1471e98b92d7SKris Buschelman   switch (op) {
1472512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1473e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1475a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1476c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1477e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
147843674050SBarry Smith     MatCheckPreallocated(A,1);
14799566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
14809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B,op,flg));
1481e98b92d7SKris Buschelman     break;
1482e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
148343674050SBarry Smith     MatCheckPreallocated(A,1);
14844e0d8c25SBarry Smith     a->roworiented = flg;
148526fbe8dcSKarl Rupp 
14869566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
14879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B,op,flg));
1488e98b92d7SKris Buschelman     break;
14898c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1490071fcb05SBarry Smith   case MAT_SORTED_FULL:
14919566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op]));
1492e98b92d7SKris Buschelman     break;
1493e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14944e0d8c25SBarry Smith     a->donotstash = flg;
1495e98b92d7SKris Buschelman     break;
1496e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
14974e0d8c25SBarry Smith     a->ht_flag = flg;
1498e98b92d7SKris Buschelman     break;
14999a4540c5SBarry Smith   case MAT_HERMITIAN:
150043674050SBarry Smith     MatCheckPreallocated(A,1);
15019566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
15020f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1503eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1504547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1505eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1506eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1507eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1508eb1ec7c1SStefano Zampini       A->symmetric = PETSC_FALSE;
1509eb1ec7c1SStefano Zampini     }
15100f2140c7SStefano Zampini #endif
1511eeffb40dSHong Zhang     break;
1512ffa07934SHong Zhang   case MAT_SPD:
151377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
151443674050SBarry Smith     MatCheckPreallocated(A,1);
15159566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
1516eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1517eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1518eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1519eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1520eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1521eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1522eb1ec7c1SStefano Zampini     }
1523eb1ec7c1SStefano Zampini #endif
1524eeffb40dSHong Zhang     break;
152577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
152643674050SBarry Smith     MatCheckPreallocated(A,1);
15279566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
1528eeffb40dSHong Zhang     break;
15299a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
15305f80ce2aSJacob Faibussowitsch     PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
15319566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op]));
153277e54ba9SKris Buschelman     break;
1533d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15344e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1535d0d4cfc2SHong Zhang     break;
1536d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15374e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1538d0d4cfc2SHong Zhang     break;
1539d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15404e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1541d0d4cfc2SHong Zhang     break;
1542e98b92d7SKris Buschelman   default:
154398921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1544a30f8f8cSSatish Balay   }
1545a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1546a30f8f8cSSatish Balay }
1547a30f8f8cSSatish Balay 
1548fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1549a30f8f8cSSatish Balay {
1550a30f8f8cSSatish Balay   PetscFunctionBegin;
1551cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
15529566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A,MAT_COPY_VALUES,B));
1553cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
15549566063dSJacob Faibussowitsch     PetscCall(MatCopy(A,*B,SAME_NONZERO_PATTERN));
1555fc4dec0aSBarry Smith   }
15568115998fSBarry Smith   PetscFunctionReturn(0);
1557a30f8f8cSSatish Balay }
1558a30f8f8cSSatish Balay 
1559dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1560a30f8f8cSSatish Balay {
1561a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1562a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
15635e90f9d9SHong Zhang   PetscInt       nv,m,n;
1564ace3abfcSBarry Smith   PetscBool      flg;
1565a30f8f8cSSatish Balay 
1566a30f8f8cSSatish Balay   PetscFunctionBegin;
1567a30f8f8cSSatish Balay   if (ll != rr) {
15689566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll,rr,&flg));
15695f80ce2aSJacob Faibussowitsch     PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same");
1570a30f8f8cSSatish Balay   }
1571b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1572b3bf805bSHong Zhang 
15739566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat,&m,&n));
15745f80ce2aSJacob Faibussowitsch   PetscCheck(m == n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same",m,n);
1575b3bf805bSHong Zhang 
15769566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr,&nv));
15775f80ce2aSJacob Faibussowitsch   PetscCheck(nv==n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
15785e90f9d9SHong Zhang 
15799566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD));
15805e90f9d9SHong Zhang 
15815e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
15829566063dSJacob Faibussowitsch   PetscCall((*b->ops->diagonalscale)(b,ll,NULL));
15835e90f9d9SHong Zhang 
15845e90f9d9SHong Zhang   /* scale the diagonal part */
15859566063dSJacob Faibussowitsch   PetscCall((*a->ops->diagonalscale)(a,ll,rr));
1586a30f8f8cSSatish Balay 
15875e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
15889566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD));
15899566063dSJacob Faibussowitsch   PetscCall((*b->ops->diagonalscale)(b,NULL,baij->lvec));
1590a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1591a30f8f8cSSatish Balay }
1592a30f8f8cSSatish Balay 
1593dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1594a30f8f8cSSatish Balay {
1595f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1596a30f8f8cSSatish Balay 
1597a30f8f8cSSatish Balay   PetscFunctionBegin;
15989566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
1599a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1600a30f8f8cSSatish Balay }
1601a30f8f8cSSatish Balay 
16026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1603a30f8f8cSSatish Balay 
1604ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1605a30f8f8cSSatish Balay {
1606a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1607a30f8f8cSSatish Balay   Mat            a,b,c,d;
1608ace3abfcSBarry Smith   PetscBool      flg;
1609a30f8f8cSSatish Balay 
1610a30f8f8cSSatish Balay   PetscFunctionBegin;
1611a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1612a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1613a30f8f8cSSatish Balay 
16149566063dSJacob Faibussowitsch   PetscCall(MatEqual(a,c,&flg));
1615abc0a331SBarry Smith   if (flg) {
16169566063dSJacob Faibussowitsch     PetscCall(MatEqual(b,d,&flg));
1617a30f8f8cSSatish Balay   }
16181c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A)));
1619a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1620a30f8f8cSSatish Balay }
1621a30f8f8cSSatish Balay 
16223c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16233c896bc6SHong Zhang {
16244c7a3774SStefano Zampini   PetscBool      isbaij;
16253c896bc6SHong Zhang 
16263c896bc6SHong Zhang   PetscFunctionBegin;
16279566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,""));
16285f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
16293c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16303c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16319566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
16329566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A,B,str));
16339566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
16343c896bc6SHong Zhang   } else {
16354c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
16364c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
16374c7a3774SStefano Zampini 
16389566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A,b->A,str));
16399566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B,b->B,str));
16403c896bc6SHong Zhang   }
16419566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
16423c896bc6SHong Zhang   PetscFunctionReturn(0);
16433c896bc6SHong Zhang }
16443c896bc6SHong Zhang 
16454994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1646273d9f13SBarry Smith {
1647273d9f13SBarry Smith   PetscFunctionBegin;
16489566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL));
1649273d9f13SBarry Smith   PetscFunctionReturn(0);
1650273d9f13SBarry Smith }
1651a5e6ed63SBarry Smith 
16524fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16534fe895cdSHong Zhang {
16544fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16554fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16564fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
16574fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
16584fe895cdSHong Zhang 
16594fe895cdSHong Zhang   PetscFunctionBegin;
16604fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16614fe895cdSHong Zhang     PetscScalar alpha = a;
16624fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
16634fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
16649566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz,&bnz));
16658b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
16664fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
16674fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
16689566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz,&bnz));
16698b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
16709566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1671ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
16729566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE));
16739566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y,a,X,str));
16749566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE));
16754fe895cdSHong Zhang   } else {
16764de5dceeSHong Zhang     Mat      B;
16774de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
16785f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
16799566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
16809566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
16819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N,&nnz_d));
16829566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N,&nnz_o));
16839566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B));
16849566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name));
16859566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N));
16869566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B,Y,Y));
16879566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,MATMPISBAIJ));
16889566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d));
16899566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o));
16909566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o));
16919566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str));
16929566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y,&B));
16939566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
16949566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
16959566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
16969566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
16974fe895cdSHong Zhang   }
16984fe895cdSHong Zhang   PetscFunctionReturn(0);
16994fe895cdSHong Zhang }
17004fe895cdSHong Zhang 
17017dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1702a5e6ed63SBarry Smith {
17031302d50aSBarry Smith   PetscInt       i;
1704afebec48SHong Zhang   PetscBool      flg;
1705a5e6ed63SBarry Smith 
17066849ba73SBarry Smith   PetscFunctionBegin;
17079566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B)); /* B[] are sbaij matrices */
1708a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
17099566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i],icol[i],&flg));
1710afebec48SHong Zhang     if (!flg) {
17119566063dSJacob Faibussowitsch       PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
1712a5e6ed63SBarry Smith     }
17134dcd73b1SHong Zhang   }
1714a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1715a5e6ed63SBarry Smith }
1716a5e6ed63SBarry Smith 
17177d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17187d68702bSBarry Smith {
17197d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17206f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
17217d68702bSBarry Smith 
17227d68702bSBarry Smith   PetscFunctionBegin;
17236f33a894SBarry Smith   if (!Y->preallocated) {
17249566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL));
17256f33a894SBarry Smith   } else if (!aij->nz) {
1726b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17279566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL));
1728b83222d8SBarry Smith     aij->nonew = nonew;
17297d68702bSBarry Smith   }
17309566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y,a));
17317d68702bSBarry Smith   PetscFunctionReturn(0);
17327d68702bSBarry Smith }
17337d68702bSBarry Smith 
17343b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
17353b49f96aSBarry Smith {
17363b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
17373b49f96aSBarry Smith 
17383b49f96aSBarry Smith   PetscFunctionBegin;
17395f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
17409566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A,missing,d));
17413b49f96aSBarry Smith   if (d) {
17423b49f96aSBarry Smith     PetscInt rstart;
17439566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A,&rstart,NULL));
17443b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
17453b49f96aSBarry Smith 
17463b49f96aSBarry Smith   }
17473b49f96aSBarry Smith   PetscFunctionReturn(0);
17483b49f96aSBarry Smith }
17493b49f96aSBarry Smith 
1750a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1751a5b7ff6bSBarry Smith {
1752a5b7ff6bSBarry Smith   PetscFunctionBegin;
1753a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1754a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1755a5b7ff6bSBarry Smith }
17563b49f96aSBarry Smith 
1757a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17583964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1759a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1760a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1761a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
176297304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1763431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1764431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1765f4259b30SLisandro Dalcin                                        NULL,
1766f4259b30SLisandro Dalcin                                        NULL,
1767f4259b30SLisandro Dalcin                                        NULL,
1768f4259b30SLisandro Dalcin                                /* 10*/ NULL,
1769f4259b30SLisandro Dalcin                                        NULL,
1770f4259b30SLisandro Dalcin                                        NULL,
177141f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1772a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
177397304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1774a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1775a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1776a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1777a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
177897304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1779a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1780a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1781a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1782f4259b30SLisandro Dalcin                                /* 24*/ NULL,
1783f4259b30SLisandro Dalcin                                        NULL,
1784f4259b30SLisandro Dalcin                                        NULL,
1785f4259b30SLisandro Dalcin                                        NULL,
1786f4259b30SLisandro Dalcin                                        NULL,
17874994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1788f4259b30SLisandro Dalcin                                        NULL,
1789f4259b30SLisandro Dalcin                                        NULL,
1790a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1791f4259b30SLisandro Dalcin                                        NULL,
1792d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1793f4259b30SLisandro Dalcin                                        NULL,
1794f4259b30SLisandro Dalcin                                        NULL,
1795f4259b30SLisandro Dalcin                                        NULL,
1796f4259b30SLisandro Dalcin                                        NULL,
1797d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
17987dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1799d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1800a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18013c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1802f4259b30SLisandro Dalcin                                /* 44*/ NULL,
1803a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18047d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1805f4259b30SLisandro Dalcin                                        NULL,
1806f4259b30SLisandro Dalcin                                        NULL,
1807f4259b30SLisandro Dalcin                                /* 49*/ NULL,
1808f4259b30SLisandro Dalcin                                        NULL,
1809f4259b30SLisandro Dalcin                                        NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
1811f4259b30SLisandro Dalcin                                        NULL,
1812f4259b30SLisandro Dalcin                                /* 54*/ NULL,
1813f4259b30SLisandro Dalcin                                        NULL,
1814a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1815f4259b30SLisandro Dalcin                                        NULL,
1816a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18177dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1818f4259b30SLisandro Dalcin                                        NULL,
1819f4259b30SLisandro Dalcin                                        NULL,
1820f4259b30SLisandro Dalcin                                        NULL,
1821f4259b30SLisandro Dalcin                                        NULL,
1822f4259b30SLisandro Dalcin                                /* 64*/ NULL,
1823f4259b30SLisandro Dalcin                                        NULL,
1824f4259b30SLisandro Dalcin                                        NULL,
1825f4259b30SLisandro Dalcin                                        NULL,
1826f4259b30SLisandro Dalcin                                        NULL,
1827d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1828f4259b30SLisandro Dalcin                                        NULL,
182928d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1830f4259b30SLisandro Dalcin                                        NULL,
1831f4259b30SLisandro Dalcin                                        NULL,
1832f4259b30SLisandro Dalcin                                /* 74*/ NULL,
1833f4259b30SLisandro Dalcin                                        NULL,
1834f4259b30SLisandro Dalcin                                        NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836f4259b30SLisandro Dalcin                                        NULL,
1837f4259b30SLisandro Dalcin                                /* 79*/ NULL,
1838f4259b30SLisandro Dalcin                                        NULL,
1839f4259b30SLisandro Dalcin                                        NULL,
1840f4259b30SLisandro Dalcin                                        NULL,
18415bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1842f4259b30SLisandro Dalcin                                /* 84*/ NULL,
1843f4259b30SLisandro Dalcin                                        NULL,
1844f4259b30SLisandro Dalcin                                        NULL,
1845f4259b30SLisandro Dalcin                                        NULL,
1846f4259b30SLisandro Dalcin                                        NULL,
1847f4259b30SLisandro Dalcin                                /* 89*/ NULL,
1848f4259b30SLisandro Dalcin                                        NULL,
1849f4259b30SLisandro Dalcin                                        NULL,
1850f4259b30SLisandro Dalcin                                        NULL,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                /* 94*/ NULL,
1853f4259b30SLisandro Dalcin                                        NULL,
1854f4259b30SLisandro Dalcin                                        NULL,
1855f4259b30SLisandro Dalcin                                        NULL,
1856f4259b30SLisandro Dalcin                                        NULL,
1857f4259b30SLisandro Dalcin                                /* 99*/ NULL,
1858f4259b30SLisandro Dalcin                                        NULL,
1859f4259b30SLisandro Dalcin                                        NULL,
18602726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1861f4259b30SLisandro Dalcin                                        NULL,
1862f4259b30SLisandro Dalcin                                /*104*/ NULL,
186399cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1864d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1865d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
186695936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1867f4259b30SLisandro Dalcin                                /*109*/ NULL,
1868f4259b30SLisandro Dalcin                                        NULL,
1869f4259b30SLisandro Dalcin                                        NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
18713b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1872f4259b30SLisandro Dalcin                                /*114*/ NULL,
1873f4259b30SLisandro Dalcin                                        NULL,
1874f4259b30SLisandro Dalcin                                        NULL,
1875f4259b30SLisandro Dalcin                                        NULL,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                /*119*/ NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
1879f4259b30SLisandro Dalcin                                        NULL,
1880f4259b30SLisandro Dalcin                                        NULL,
1881f4259b30SLisandro Dalcin                                        NULL,
1882f4259b30SLisandro Dalcin                                /*124*/ NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884f4259b30SLisandro Dalcin                                        NULL,
1885f4259b30SLisandro Dalcin                                        NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
1887f4259b30SLisandro Dalcin                                /*129*/ NULL,
1888f4259b30SLisandro Dalcin                                        NULL,
1889f4259b30SLisandro Dalcin                                        NULL,
1890f4259b30SLisandro Dalcin                                        NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                /*134*/ NULL,
1893f4259b30SLisandro Dalcin                                        NULL,
1894f4259b30SLisandro Dalcin                                        NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
189746533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
1898f4259b30SLisandro Dalcin                                        NULL,
1899f4259b30SLisandro Dalcin                                        NULL,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902d70f29a3SPierre Jolivet                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1903d70f29a3SPierre Jolivet                                        NULL,
1904d70f29a3SPierre Jolivet                                        NULL,
1905d70f29a3SPierre Jolivet                                        NULL
190699cafbc1SBarry Smith };
1907a30f8f8cSSatish Balay 
1908b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1909a23d5eceSKris Buschelman {
1910476417e5SBarry Smith   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
1911535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
19125d2a9ed1SStefano Zampini   PetscMPIInt    size;
1913a23d5eceSKris Buschelman 
1914a23d5eceSKris Buschelman   PetscFunctionBegin;
19159566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B,PetscAbs(bs)));
19169566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19179566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19189566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs));
19195f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->N,B->cmap->N);
19205f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->n,B->cmap->n);
1921899cda47SBarry Smith 
1922d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1923d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
19245f80ce2aSJacob Faibussowitsch   PetscCheck(mbs*bs == B->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT,B->rmap->N,bs);
1925a23d5eceSKris Buschelman 
1926d0f46423SBarry Smith   B->rmap->bs = bs;
1927a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1928a23d5eceSKris Buschelman   b->mbs      = mbs;
1929a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1930de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1931de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1932a23d5eceSKris Buschelman 
1933a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1934d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1935a23d5eceSKris Buschelman   }
1936d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1937d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1938a23d5eceSKris Buschelman 
1939d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1940d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1941a23d5eceSKris Buschelman 
1942cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
19439566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&b->colmap));
1944cb7b82ddSBarry Smith #else
19459566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
1946cb7b82ddSBarry Smith #endif
19479566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
19489566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
19499566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
19509566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
19519566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
19529566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
19539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
19549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
19559566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
1956cb7b82ddSBarry Smith 
1957cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
19589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size));
19599566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
19609566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&b->B));
19619566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0));
19629566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B,MATSEQBAIJ));
19639566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B));
1964cb7b82ddSBarry Smith 
1965526dfc15SBarry Smith   if (!B->preallocated) {
19669566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF,&b->A));
19679566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n));
19689566063dSJacob Faibussowitsch     PetscCall(MatSetType(b->A,MATSEQSBAIJ));
19699566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A));
19709566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash));
1971526dfc15SBarry Smith   }
1972a23d5eceSKris Buschelman 
19739566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz));
19749566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz));
197526fbe8dcSKarl Rupp 
1976526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
1977cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
1978cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
1979a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1980a23d5eceSKris Buschelman }
1981a23d5eceSKris Buschelman 
1982dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1983dfb205c3SBarry Smith {
198402106b30SBarry Smith   PetscInt       m,rstart,cend;
1985f4259b30SLisandro Dalcin   PetscInt       i,j,d,nz,bd, nz_max=0,*d_nnz=NULL,*o_nnz=NULL;
1986f4259b30SLisandro Dalcin   const PetscInt *JJ    =NULL;
1987f4259b30SLisandro Dalcin   PetscScalar    *values=NULL;
1988bb80cfbbSStefano Zampini   PetscBool      roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented;
19893bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
1990dfb205c3SBarry Smith 
1991dfb205c3SBarry Smith   PetscFunctionBegin;
19925f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1,PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %" PetscInt_FMT,bs);
19939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap,bs));
19949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap,bs));
19959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs));
1998dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1999dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2000dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2001dfb205c3SBarry Smith 
20025f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]);
20039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m,&d_nnz,m,&o_nnz));
2004dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2005dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
20065f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz);
20070cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2008dfb205c3SBarry Smith     JJ     = jj + ii[i];
20090cd7f59aSBarry Smith     bd     = 0;
2010dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
20110cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2012dfb205c3SBarry Smith       JJ++;
20130cd7f59aSBarry Smith       bd++;
2014dfb205c3SBarry Smith     }
2015dfb205c3SBarry Smith     d  = 0;
2016dfb205c3SBarry Smith     for (; j<nz; j++) {
2017dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2018dfb205c3SBarry Smith       d++;
2019dfb205c3SBarry Smith     }
2020dfb205c3SBarry Smith     d_nnz[i] = d;
20210cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20220cd7f59aSBarry Smith     nz       = nz - bd;
20230cd7f59aSBarry Smith     nz_max = PetscMax(nz_max,nz);
2024dfb205c3SBarry Smith   }
20259566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz));
20269566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE));
20279566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz,o_nnz));
2028dfb205c3SBarry Smith 
2029dfb205c3SBarry Smith   values = (PetscScalar*)V;
2030dfb205c3SBarry Smith   if (!values) {
20319566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(bs*bs*nz_max,&values));
2032dfb205c3SBarry Smith   }
2033dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2034dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2035dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2036dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2037bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2038dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
20399566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES));
2040bb80cfbbSStefano Zampini     } else {                    /* block ordering does not match so we can only insert one block at a time. */
2041bb80cfbbSStefano Zampini       PetscInt j;
20420cd7f59aSBarry Smith       for (j=0; j<ncols; j++) {
20430cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
20449566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES));
20450cd7f59aSBarry Smith       }
20460cd7f59aSBarry Smith     }
2047dfb205c3SBarry Smith   }
2048dfb205c3SBarry Smith 
20499566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
20503bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
20513bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
20529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
20539566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
20543bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
20553bd0feecSPierre Jolivet 
20569566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
2057dfb205c3SBarry Smith   PetscFunctionReturn(0);
2058dfb205c3SBarry Smith }
2059dfb205c3SBarry Smith 
20600bad9183SKris Buschelman /*MC
2061fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2062828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2063828413b8SBarry Smith    the matrix is stored.
2064828413b8SBarry Smith 
2065828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2066828413b8SBarry Smith    can call MatSetOption(Mat, MAT_HERMITIAN);
20670bad9183SKris Buschelman 
20680bad9183SKris Buschelman    Options Database Keys:
20690bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
20700bad9183SKris Buschelman 
2071476417e5SBarry Smith    Notes:
2072476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2073476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2074476417e5SBarry Smith 
20750bad9183SKris Buschelman    Level: beginner
20760bad9183SKris Buschelman 
2077db781477SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
20780bad9183SKris Buschelman M*/
20790bad9183SKris Buschelman 
20808cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2081b5df2d14SHong Zhang {
2082b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
208394ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2084b5df2d14SHong Zhang 
2085b5df2d14SHong Zhang   PetscFunctionBegin;
20869566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(B,&b));
2087b0a32e0cSBarry Smith   B->data = (void*)b;
20889566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps)));
2089b5df2d14SHong Zhang 
2090b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2091b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2092b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2093b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
209426fbe8dcSKarl Rupp 
20959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank));
20969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size));
2097b5df2d14SHong Zhang 
2098b5df2d14SHong Zhang   /* build local table of row and column ownerships */
20999566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size+2,&b->rangebs));
2100b5df2d14SHong Zhang 
2101b5df2d14SHong Zhang   /* build cache for off array entries formed */
21029566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash));
210326fbe8dcSKarl Rupp 
2104b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21050298fd71SBarry Smith   b->colmap      = NULL;
21060298fd71SBarry Smith   b->garray      = NULL;
2107b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2108b5df2d14SHong Zhang 
2109b5df2d14SHong Zhang   /* stuff used in block assembly */
2110f4259b30SLisandro Dalcin   b->barray = NULL;
2111b5df2d14SHong Zhang 
2112b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2113f4259b30SLisandro Dalcin   b->lvec    = NULL;
2114f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2115f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2116f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2117f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2118f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2119f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2120f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2121b5df2d14SHong Zhang 
2122b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2123f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2124f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2125b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2126b5df2d14SHong Zhang 
2127b5df2d14SHong Zhang   /* hash table stuff */
2128f4259b30SLisandro Dalcin   b->ht           = NULL;
2129f4259b30SLisandro Dalcin   b->hd           = NULL;
2130b5df2d14SHong Zhang   b->ht_size      = 0;
2131b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2132b5df2d14SHong Zhang   b->ht_fact      = 0;
2133b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2134b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2135b5df2d14SHong Zhang 
21367dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21377a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21387a868f3eSHong Zhang 
2139f4259b30SLisandro Dalcin   b->in_loc = NULL;
2140f4259b30SLisandro Dalcin   b->v_loc  = NULL;
214159ffdab8SBarry Smith   b->n_loc  = 0;
214294ae4db5SBarry Smith 
21439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ));
21449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ));
21459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ));
21469566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
21476214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental));
21496214f412SHong Zhang #endif
2150d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
21519566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK));
2152d24d4204SJose E. Roman #endif
21539566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic));
21549566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic));
2155aa5a9175SDahai Guo 
215623ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
215723ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
215823ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
215923ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
21609899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
2161eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
216213647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
216313647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
2164eb1ec7c1SStefano Zampini #else
2165eb1ec7c1SStefano Zampini   B->hermitian                  = PETSC_TRUE;
2166eb1ec7c1SStefano Zampini   B->hermitian_set              = PETSC_TRUE;
2167eb1ec7c1SStefano Zampini #endif
216813647f61SHong Zhang 
21699566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ));
2170d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");
21719566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL));
217294ae4db5SBarry Smith   if (flg) {
217394ae4db5SBarry Smith     PetscReal fact = 1.39;
21749566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE));
21759566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL));
217694ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
21779566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B,fact));
21789566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B,"Hash table Factor used %5.2g\n",(double)fact));
217994ae4db5SBarry Smith   }
2180d0609cedSBarry Smith   PetscOptionsEnd();
2181b5df2d14SHong Zhang   PetscFunctionReturn(0);
2182b5df2d14SHong Zhang }
2183b5df2d14SHong Zhang 
2184209238afSKris Buschelman /*MC
2185002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2186209238afSKris Buschelman 
2187209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2188209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2189209238afSKris Buschelman 
2190209238afSKris Buschelman    Options Database Keys:
2191209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2192209238afSKris Buschelman 
2193209238afSKris Buschelman   Level: beginner
2194209238afSKris Buschelman 
2195db781477SPatrick Sanan .seealso: `MatCreateSBAIJ`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2196209238afSKris Buschelman M*/
2197209238afSKris Buschelman 
2198b5df2d14SHong Zhang /*@C
2199b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2200b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2201b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2202b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2203b5df2d14SHong Zhang 
2204b5df2d14SHong Zhang    Collective on Mat
2205b5df2d14SHong Zhang 
2206b5df2d14SHong Zhang    Input Parameters:
22071c4f3114SJed Brown +  B - the matrix
2208bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2209bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2210b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2211b5df2d14SHong Zhang            submatrix  (same for all local rows)
2212b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
22136d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
22140298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
221595742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2216b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2217b5df2d14SHong Zhang            submatrix (same for all local rows).
2218b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2219c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
22200298fd71SBarry Smith            (possibly different for each block row) or NULL.
2221b5df2d14SHong Zhang 
2222b5df2d14SHong Zhang    Options Database Keys:
2223a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2224b5df2d14SHong Zhang                      block calculations (much slower)
2225a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2226b5df2d14SHong Zhang 
2227b5df2d14SHong Zhang    Notes:
2228b5df2d14SHong Zhang 
2229b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2230b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2231b5df2d14SHong Zhang 
223249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
223349a6f317SBarry Smith 
2234b5df2d14SHong Zhang    Storage Information:
2235b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2236b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2237b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2238b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2239b5df2d14SHong Zhang 
2240b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2241b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
22420298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2243b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2244b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2245b5df2d14SHong Zhang 
2246aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2247aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2248aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2249aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2250aa95bbe8SBarry Smith 
2251b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2252b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2253b5df2d14SHong Zhang 
2254b5df2d14SHong Zhang .vb
2255b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2256a4b1a0f6SJed Brown           --------------------------
2257c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2258c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2259c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2260a4b1a0f6SJed Brown           --------------------------
2261b5df2d14SHong Zhang .ve
2262b5df2d14SHong Zhang 
2263b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2264b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
22656d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
22666d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2267b5df2d14SHong Zhang 
22686d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22696d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2270c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2271c2fc9fa9SBarry Smith 
2272b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2273b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2274b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2275b5df2d14SHong Zhang    matrices.
2276b5df2d14SHong Zhang 
2277b5df2d14SHong Zhang    Level: intermediate
2278b5df2d14SHong Zhang 
2279db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2280b5df2d14SHong Zhang @*/
22817087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2282b5df2d14SHong Zhang {
2283b5df2d14SHong Zhang   PetscFunctionBegin;
22846ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22856ba663aaSJed Brown   PetscValidType(B,1);
22866ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
2287cac4c232SBarry Smith   PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));
2288b5df2d14SHong Zhang   PetscFunctionReturn(0);
2289b5df2d14SHong Zhang }
2290b5df2d14SHong Zhang 
2291a30f8f8cSSatish Balay /*@C
229269b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2293a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2294a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2295a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2296a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2297a30f8f8cSSatish Balay 
2298d083f849SBarry Smith    Collective
2299a30f8f8cSSatish Balay 
2300a30f8f8cSSatish Balay    Input Parameters:
2301a30f8f8cSSatish Balay +  comm - MPI communicator
2302bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2303bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2304a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2305a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2306a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2307a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2308a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2309a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2310a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2311a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2312a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2313a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2314a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
23156d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
23160298fd71SBarry Smith            (possibly different for each block block row) or NULL.
231795742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
231895742e49SBarry Smith            set its value even if it is zero.
2319a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2320a30f8f8cSSatish Balay            submatrix (same for all local rows).
2321a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2322a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23230298fd71SBarry Smith            each block row) or NULL.
2324a30f8f8cSSatish Balay 
2325a30f8f8cSSatish Balay    Output Parameter:
2326a30f8f8cSSatish Balay .  A - the matrix
2327a30f8f8cSSatish Balay 
2328a30f8f8cSSatish Balay    Options Database Keys:
2329a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2330a30f8f8cSSatish Balay                      block calculations (much slower)
2331a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2332a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2333a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2334a30f8f8cSSatish Balay 
2335175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2336f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2337175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2338175b88e8SBarry Smith 
2339a30f8f8cSSatish Balay    Notes:
2340d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
23416d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2342d1be2dadSMatthew Knepley 
2343a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2344a30f8f8cSSatish Balay    (possibly both).
2345a30f8f8cSSatish Balay 
2346a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2347a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2348a30f8f8cSSatish Balay 
234949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
235049a6f317SBarry Smith 
2351a30f8f8cSSatish Balay    Storage Information:
2352a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2353a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2354a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2355a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2356a30f8f8cSSatish Balay 
2357a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2358a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
23590298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2360a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2361a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2362a30f8f8cSSatish Balay 
2363a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2364a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2365a30f8f8cSSatish Balay 
2366a30f8f8cSSatish Balay .vb
2367a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2368a4b1a0f6SJed Brown           --------------------------
2369c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2370c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2371c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2372a4b1a0f6SJed Brown           --------------------------
2373a30f8f8cSSatish Balay .ve
2374a30f8f8cSSatish Balay 
2375a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2376a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
23776d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23786d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2379a30f8f8cSSatish Balay 
23806d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23816d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2382a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2383a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2384a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2385a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2386a30f8f8cSSatish Balay    matrices.
2387a30f8f8cSSatish Balay 
2388a30f8f8cSSatish Balay    Level: intermediate
2389a30f8f8cSSatish Balay 
2390db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`
2391a30f8f8cSSatish Balay @*/
2392a30f8f8cSSatish Balay 
239369b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2394a30f8f8cSSatish Balay {
23951302d50aSBarry Smith   PetscMPIInt    size;
2396a30f8f8cSSatish Balay 
2397a30f8f8cSSatish Balay   PetscFunctionBegin;
23989566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,A));
23999566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A,m,n,M,N));
24009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
2401273d9f13SBarry Smith   if (size > 1) {
24029566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A,MATMPISBAIJ));
24039566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz));
2404273d9f13SBarry Smith   } else {
24059566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A,MATSEQSBAIJ));
24069566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz));
2407273d9f13SBarry Smith   }
2408a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2409a30f8f8cSSatish Balay }
2410a30f8f8cSSatish Balay 
24116849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2412a30f8f8cSSatish Balay {
2413a30f8f8cSSatish Balay   Mat            mat;
2414a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2415d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2416387bc808SHong Zhang   PetscScalar    *array;
2417a30f8f8cSSatish Balay 
2418a30f8f8cSSatish Balay   PetscFunctionBegin;
2419f4259b30SLisandro Dalcin   *newmat = NULL;
242026fbe8dcSKarl Rupp 
24219566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat));
24229566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N));
24239566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat,((PetscObject)matin)->type_name));
24249566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap));
24259566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap));
2426e1b6402fSHong Zhang 
2427d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2428273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
242982327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24307fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24317fff6886SHong Zhang 
2432b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2433a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2434a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2435a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2436a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2437a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2438a30f8f8cSSatish Balay 
2439a30f8f8cSSatish Balay   a->size         = oldmat->size;
2440a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2441a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2442a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2443f4259b30SLisandro Dalcin   a->rowindices   = NULL;
2444f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
2445a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2446f4259b30SLisandro Dalcin   a->barray       = NULL;
2447899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2448899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2449899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2450899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2451a30f8f8cSSatish Balay 
2452a30f8f8cSSatish Balay   /* hash table stuff */
2453f4259b30SLisandro Dalcin   a->ht           = NULL;
2454f4259b30SLisandro Dalcin   a->hd           = NULL;
2455a30f8f8cSSatish Balay   a->ht_size      = 0;
2456a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2457a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2458a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2459a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2460a30f8f8cSSatish Balay 
24619566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2));
2462a30f8f8cSSatish Balay   if (oldmat->colmap) {
2463a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
24649566063dSJacob Faibussowitsch     PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap));
2465a30f8f8cSSatish Balay #else
24669566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs,&a->colmap));
24679566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt)));
24689566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs));
2469a30f8f8cSSatish Balay #endif
2470f4259b30SLisandro Dalcin   } else a->colmap = NULL;
2471387bc808SHong Zhang 
2472a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
24739566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len,&a->garray));
24749566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt)));
24759566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray,oldmat->garray,len));
2476f4259b30SLisandro Dalcin   } else a->garray = NULL;
2477a30f8f8cSSatish Balay 
24789566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash));
24799566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec,&a->lvec));
24809566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec));
24819566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx));
24829566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx));
248382327fa8SHong Zhang 
24849566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec0,&a->slvec0));
24859566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0));
24869566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec1,&a->slvec1));
24879566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1));
2488387bc808SHong Zhang 
24899566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(a->slvec1,&nt));
24909566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec1,&array));
24919566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a));
24929566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b));
24939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec1,&array));
24949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0,&array));
24959566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b));
24969566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0,&array));
24979566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0));
24989566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1));
24999566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b));
25009566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a));
25019566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b));
2502387bc808SHong Zhang 
2503387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
25049566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2505387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
25069566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx));
250782327fa8SHong Zhang 
25089566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A));
25099566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A));
25109566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B));
25119566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B));
25129566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist));
2513a30f8f8cSSatish Balay   *newmat = mat;
2514a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2515a30f8f8cSSatish Balay }
2516a30f8f8cSSatish Balay 
2517618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2518618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2519618cc2edSLisandro Dalcin 
2520618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer)
252195936485SShri Abhyankar {
25227f489da9SVaclav Hapla   PetscBool      isbinary;
252395936485SShri Abhyankar 
252495936485SShri Abhyankar   PetscFunctionBegin;
25259566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
25265f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
25279566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat,viewer));
252895936485SShri Abhyankar   PetscFunctionReturn(0);
252995936485SShri Abhyankar }
253095936485SShri Abhyankar 
2531dcf5cc72SBarry Smith /*XXXXX@
2532a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2533a30f8f8cSSatish Balay 
2534a30f8f8cSSatish Balay    Input Parameters:
2535a30f8f8cSSatish Balay .  mat  - the matrix
2536a30f8f8cSSatish Balay .  fact - factor
2537a30f8f8cSSatish Balay 
2538c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2539a30f8f8cSSatish Balay 
2540a30f8f8cSSatish Balay    Level: advanced
2541a30f8f8cSSatish Balay 
2542a30f8f8cSSatish Balay   Notes:
2543a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2544a30f8f8cSSatish Balay 
2545db781477SPatrick Sanan .seealso: `MatSetOption()`
2546dcf5cc72SBarry Smith @XXXXX*/
2547dcf5cc72SBarry Smith 
2548985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
254924d5174aSHong Zhang {
255024d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2551f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2552ca54ac64SHong Zhang   PetscReal      atmp;
255387828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
25541302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25551302d50aSBarry Smith   PetscMPIInt    rank,size;
25561302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
255787828ca2SBarry Smith   PetscScalar    *va;
25588a1c53f2SBarry Smith   MatScalar      *ba;
2559f4c0e9e4SHong Zhang   MPI_Status     stat;
256024d5174aSHong Zhang 
256124d5174aSHong Zhang   PetscFunctionBegin;
25625f80ce2aSJacob Faibussowitsch   PetscCheck(!idx,PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
25639566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A,v,NULL));
25649566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v,&va));
2565f4c0e9e4SHong Zhang 
25669566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size));
25679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank));
2568f4c0e9e4SHong Zhang 
2569d0f46423SBarry Smith   bs  = A->rmap->bs;
2570f4c0e9e4SHong Zhang   mbs = a->mbs;
2571f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2572f4c0e9e4SHong Zhang   ba  = b->a;
2573f4c0e9e4SHong Zhang   bi  = b->i;
2574f4c0e9e4SHong Zhang   bj  = b->j;
2575f4c0e9e4SHong Zhang 
2576f4c0e9e4SHong Zhang   /* find ownerships */
2577d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2578f4c0e9e4SHong Zhang 
2579f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
25809566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs*Mbs,&work));
2581f4c0e9e4SHong Zhang 
2582f4c0e9e4SHong Zhang   /* row_max for B */
2583b8475685SHong Zhang   if (rank != size-1) {
2584f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2585f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2586f4c0e9e4SHong Zhang       brow  = bs*i;
2587f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2588f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2589f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2590ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
259104d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2592f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2593f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2594ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2595ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2596f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2597f4c0e9e4SHong Zhang           }
2598f4c0e9e4SHong Zhang         }
2599f4c0e9e4SHong Zhang         bj++;
2600f4c0e9e4SHong Zhang       }
2601f4c0e9e4SHong Zhang     }
2602f4c0e9e4SHong Zhang 
2603f4c0e9e4SHong Zhang     /* send values to its owners */
2604f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2605f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2606ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
26079566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A)));
2608ca54ac64SHong Zhang     }
2609f4c0e9e4SHong Zhang   }
2610f4c0e9e4SHong Zhang 
2611f4c0e9e4SHong Zhang   /* receive values */
2612ca54ac64SHong Zhang   if (rank) {
2613f4c0e9e4SHong Zhang     rvalues = work;
2614ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2615f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
26169566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat));
2617f4c0e9e4SHong Zhang       /* process values */
2618f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2619ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2620f4c0e9e4SHong Zhang       }
2621f4c0e9e4SHong Zhang     }
2622ca54ac64SHong Zhang   }
2623f4c0e9e4SHong Zhang 
26249566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v,&va));
26259566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
262624d5174aSHong Zhang   PetscFunctionReturn(0);
262724d5174aSHong Zhang }
26282798e883SHong Zhang 
262941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
26302798e883SHong Zhang {
26312798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2632d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
26333649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2634ffe4fb16SHong Zhang   Vec               bb1;
26353649974fSBarry Smith   const PetscScalar *b;
2636ffe4fb16SHong Zhang 
2637ffe4fb16SHong Zhang   PetscFunctionBegin;
26385f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive",its,lits);
26395f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1,PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2640ffe4fb16SHong Zhang 
2641a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
26429566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2643a2b30743SBarry Smith     PetscFunctionReturn(0);
2644a2b30743SBarry Smith   }
2645a2b30743SBarry Smith 
2646ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2647ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
26489566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx));
2649ffe4fb16SHong Zhang       its--;
2650ffe4fb16SHong Zhang     }
2651ffe4fb16SHong Zhang 
26529566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb,&bb1));
2653ffe4fb16SHong Zhang     while (its--) {
2654ffe4fb16SHong Zhang 
2655ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
26569566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b));
2657ffe4fb16SHong Zhang 
2658ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26599566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0,&ptr));
26609566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx,&x));
26619566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr,x,bs*mbs));
26629566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0,&ptr));
2663ffe4fb16SHong Zhang 
26649566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0,-1.0));
2665ffe4fb16SHong Zhang 
2666ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26679566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1,&ptr));
26689566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb,&b));
26699566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr,b,bs*mbs));
26709566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1,&ptr));
2671ffe4fb16SHong Zhang 
2672ffe4fb16SHong Zhang       /* set slvec1b = 0 */
26739566063dSJacob Faibussowitsch       PetscCall(VecSet(mat->slvec1b,0.0));
2674ffe4fb16SHong Zhang 
26759566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD));
26769566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx,&x));
26779566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb,&b));
26789566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD));
2679ffe4fb16SHong Zhang 
2680ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
26819566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1));
2682ffe4fb16SHong Zhang 
2683ffe4fb16SHong Zhang       /* local diagonal sweep */
26849566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx));
2685ffe4fb16SHong Zhang     }
26869566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2687fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26889566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2689fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26909566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2691fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2692fa22f6d0SBarry Smith     Vec               xx1;
2693ace3abfcSBarry Smith     PetscBool         hasop;
269420f1ed55SBarry Smith     const PetscScalar *diag;
2695887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
269620f1ed55SBarry Smith     PetscInt          i,n;
2697fa22f6d0SBarry Smith 
2698fa22f6d0SBarry Smith     if (!mat->xx1) {
26999566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb,&mat->xx1));
27009566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb,&mat->bb1));
2701fa22f6d0SBarry Smith     }
2702fa22f6d0SBarry Smith     xx1 = mat->xx1;
2703fa22f6d0SBarry Smith     bb1 = mat->bb1;
2704fa22f6d0SBarry Smith 
27059566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx));
2706fa22f6d0SBarry Smith 
2707fa22f6d0SBarry Smith     if (!mat->diag) {
2708effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27099566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin,&mat->diag,NULL));
27109566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin,mat->diag));
2711fa22f6d0SBarry Smith     }
27129566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop));
2713fa22f6d0SBarry Smith 
2714fa22f6d0SBarry Smith     if (hasop) {
27159566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin,xx,bb1));
27169566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
271720f1ed55SBarry Smith     } else {
271820f1ed55SBarry Smith       /*
271920f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
27209566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
27219566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
272220f1ed55SBarry Smith       */
27239566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a,&sl));
27249566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag,&diag));
27259566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb,&b));
27269566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx,&x));
27279566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx,&n));
2728887ee2caSBarry Smith       if (omega == 1.0) {
272926fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
27309566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0*n));
2731887ee2caSBarry Smith       } else {
273226fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
27339566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0*n));
2734887ee2caSBarry Smith       }
27359566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a,&sl));
27369566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag,&diag));
27379566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb,&b));
27389566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx,&x));
273920f1ed55SBarry Smith     }
2740fa22f6d0SBarry Smith 
2741fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
27429566063dSJacob Faibussowitsch     PetscCall(VecSet(mat->slvec1b,0.0));
27439566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b));
27449566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0,&from));
27459566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx,&x));
27469566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from,x,bs*mbs));
27479566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0,&from));
27489566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx,&x));
27499566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD));
27509566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD));
27519566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a));
2752fa22f6d0SBarry Smith 
2753fa22f6d0SBarry Smith     /* local sweep */
27549566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1));
27559566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx,1.0,xx1));
2756f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2757ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2758ffe4fb16SHong Zhang }
2759ffe4fb16SHong Zhang 
2760dfb205c3SBarry Smith /*@
2761dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2762dfb205c3SBarry Smith          CSR format the local rows.
2763dfb205c3SBarry Smith 
2764d083f849SBarry Smith    Collective
2765dfb205c3SBarry Smith 
2766dfb205c3SBarry Smith    Input Parameters:
2767dfb205c3SBarry Smith +  comm - MPI communicator
2768dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2769dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2770dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2771dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2772dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2773dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2774dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2775483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2776dfb205c3SBarry Smith .   j - column indices
2777dfb205c3SBarry Smith -   a - matrix values
2778dfb205c3SBarry Smith 
2779dfb205c3SBarry Smith    Output Parameter:
2780dfb205c3SBarry Smith .   mat - the matrix
2781dfb205c3SBarry Smith 
2782dfb205c3SBarry Smith    Level: intermediate
2783dfb205c3SBarry Smith 
2784dfb205c3SBarry Smith    Notes:
2785dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2786dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2787dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2788dfb205c3SBarry Smith 
2789dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2790dfb205c3SBarry Smith 
2791db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2792db781477SPatrick Sanan           `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
2793dfb205c3SBarry Smith @*/
27947087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2795dfb205c3SBarry Smith {
2796dfb205c3SBarry Smith   PetscFunctionBegin;
27975f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
27985f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
27999566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,mat));
28009566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat,m,n,M,N));
28019566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat,MATMPISBAIJ));
28029566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a));
2803dfb205c3SBarry Smith   PetscFunctionReturn(0);
2804dfb205c3SBarry Smith }
2805dfb205c3SBarry Smith 
2806dfb205c3SBarry Smith /*@C
2807664954b6SBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values
2808dfb205c3SBarry Smith 
2809d083f849SBarry Smith    Collective
2810dfb205c3SBarry Smith 
2811dfb205c3SBarry Smith    Input Parameters:
28121c4f3114SJed Brown +  B - the matrix
2813dfb205c3SBarry Smith .  bs - the block size
2814dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2815dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2816dfb205c3SBarry Smith -  v - optional values in the matrix
2817dfb205c3SBarry Smith 
2818664954b6SBarry Smith    Level: advanced
2819664954b6SBarry Smith 
2820664954b6SBarry Smith    Notes:
28210cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28220cd7f59aSBarry Smith    and usually the numerical values as well
28230cd7f59aSBarry Smith 
282450c5228eSBarry Smith    Any entries below the diagonal are ignored
2825dfb205c3SBarry Smith 
2826db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`
2827dfb205c3SBarry Smith @*/
28287087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2829dfb205c3SBarry Smith {
2830dfb205c3SBarry Smith   PetscFunctionBegin;
2831cac4c232SBarry Smith   PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));
2832dfb205c3SBarry Smith   PetscFunctionReturn(0);
2833dfb205c3SBarry Smith }
2834dfb205c3SBarry Smith 
283510c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
28364dcd73b1SHong Zhang {
283710c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
283810c56fdeSHong Zhang   PetscInt       *indx;
283910c56fdeSHong Zhang   PetscScalar    *values;
2840dfb205c3SBarry Smith 
28414dcd73b1SHong Zhang   PetscFunctionBegin;
28429566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat,&m,&N));
284310c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
284410c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
2845de25e9cbSPierre Jolivet     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
284610c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
2847de25e9cbSPierre Jolivet     PetscMPIInt    rank,size;
28484dcd73b1SHong Zhang 
28499566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat,&bs,&cbs));
285010c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
285110c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
28529566063dSJacob Faibussowitsch       PetscCall(PetscSplitOwnershipBlock(comm,cbs,&n,&N));
285310c56fdeSHong Zhang     }
2854da91a574SPierre Jolivet     nbs = n/cbs;
28554dcd73b1SHong Zhang 
28569566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax,&bindx));
2857d0609cedSBarry Smith     MatPreallocateBegin(comm,mbs,nbs,dnz,onz); /* inline function, output __end and __rstart are used below */
2858de25e9cbSPierre Jolivet 
28599566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm,&rank));
28609566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm,&size));
2861de25e9cbSPierre Jolivet     if (rank == size-1) {
2862de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
28635f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT,__end,Nbs);
2864de25e9cbSPierre Jolivet     }
2865de25e9cbSPierre Jolivet 
2866d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
28679566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE));
286810c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
28699566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL)); /* non-blocked nnz and indx */
28704dcd73b1SHong Zhang       nnz  = nnz/bs;
28714dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
28729566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz));
28739566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL));
28744dcd73b1SHong Zhang     }
28759566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE));
28769566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
28774dcd73b1SHong Zhang 
28789566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm,outmat));
28799566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE));
28809566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat,bs,cbs));
28819566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat,MATSBAIJ));
28829566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz));
28839566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz));
2884d0609cedSBarry Smith     MatPreallocateEnd(dnz,onz);
28854dcd73b1SHong Zhang   }
28864dcd73b1SHong Zhang 
288710c56fdeSHong Zhang   /* numeric phase */
28889566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat,&bs,&cbs));
28899566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat,&rstart,NULL));
28904dcd73b1SHong Zhang 
28919566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE));
28924dcd73b1SHong Zhang   for (i=0; i<m; i++) {
28939566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values));
28944dcd73b1SHong Zhang     Ii   = i + rstart;
28959566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES));
28969566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values));
28974dcd73b1SHong Zhang   }
28989566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE));
28999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY));
29009566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY));
29014dcd73b1SHong Zhang   PetscFunctionReturn(0);
29024dcd73b1SHong Zhang }
2903