1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*); 12d24d4204SJose E. Roman #endif 13b147fbf3SStefano Zampini 14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 16b147fbf3SStefano Zampini { 17b147fbf3SStefano Zampini Mat preallocator; 18b147fbf3SStefano Zampini PetscInt r,rstart,rend; 19b147fbf3SStefano Zampini PetscInt bs,i,m,n,M,N; 20b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 21b147fbf3SStefano Zampini 22b147fbf3SStefano Zampini PetscFunctionBegin; 23b147fbf3SStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 24b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B,nm,2); 25b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 26b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i],MAT_CLASSID,3); 279566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap,X[i]->rmap,&cong)); 285f80ce2aSJacob Faibussowitsch PetscCheck(cong,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts"); 29b147fbf3SStefano Zampini } 30b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B,fill,5); 319566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B,&bs)); 329566063dSJacob Faibussowitsch PetscCall(MatGetSize(B,&M,&N)); 339566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B,&m,&n)); 349566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B),&preallocator)); 359566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator,MATPREALLOCATOR)); 369566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator,bs)); 379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator,m,n,M,N)); 389566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 399566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator,&rstart,&rend)); 40b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 41b147fbf3SStefano Zampini PetscInt ncols; 42b147fbf3SStefano Zampini const PetscInt *row; 43b147fbf3SStefano Zampini const PetscScalar *vals; 44b147fbf3SStefano Zampini 45b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 469566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i],r,&ncols,&row,&vals)); 479566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES)); 48b147fbf3SStefano Zampini if (symm && symm[i]) { 499566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES)); 50b147fbf3SStefano Zampini } 519566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i],r,&ncols,&row,&vals)); 52b147fbf3SStefano Zampini } 53b147fbf3SStefano Zampini } 549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY)); 559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY)); 569566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator,fill,B)); 579566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 58b147fbf3SStefano Zampini PetscFunctionReturn(0); 59b147fbf3SStefano Zampini } 60b147fbf3SStefano Zampini 6128d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 62b147fbf3SStefano Zampini { 63b147fbf3SStefano Zampini Mat B; 64b147fbf3SStefano Zampini PetscInt r; 65b147fbf3SStefano Zampini 66b147fbf3SStefano Zampini PetscFunctionBegin; 67b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 6828d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE,isdense; 69b147fbf3SStefano Zampini PetscInt bs; 70b147fbf3SStefano Zampini 719566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 739566063dSJacob Faibussowitsch PetscCall(MatSetType(B,newtype)); 749566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A,&bs)); 759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B,bs)); 769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 789566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"")); 7928d58a37SPierre Jolivet if (!isdense) { 809566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 819566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE)); 829566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 8328d58a37SPierre Jolivet } else { 849566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 8528d58a37SPierre Jolivet } 8628d58a37SPierre Jolivet } else { 8728d58a37SPierre Jolivet B = *newmat; 889566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 8928d58a37SPierre Jolivet } 90b147fbf3SStefano Zampini 919566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 92b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 93b147fbf3SStefano Zampini PetscInt ncols; 94b147fbf3SStefano Zampini const PetscInt *row; 95b147fbf3SStefano Zampini const PetscScalar *vals; 96b147fbf3SStefano Zampini 979566063dSJacob Faibussowitsch PetscCall(MatGetRow(A,r,&ncols,&row,&vals)); 989566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES)); 99eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 100eb1ec7c1SStefano Zampini if (A->hermitian) { 101eb1ec7c1SStefano Zampini PetscInt i; 102eb1ec7c1SStefano Zampini for (i = 0; i < ncols; i++) { 1039566063dSJacob Faibussowitsch PetscCall(MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES)); 104eb1ec7c1SStefano Zampini } 105eb1ec7c1SStefano Zampini } else { 1069566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES)); 107eb1ec7c1SStefano Zampini } 108eb1ec7c1SStefano Zampini #else 1099566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES)); 110eb1ec7c1SStefano Zampini #endif 1119566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A,r,&ncols,&row,&vals)); 112b147fbf3SStefano Zampini } 1139566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 1159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 116b147fbf3SStefano Zampini 117b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1189566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 119b147fbf3SStefano Zampini } else { 120b147fbf3SStefano Zampini *newmat = B; 121b147fbf3SStefano Zampini } 122b147fbf3SStefano Zampini PetscFunctionReturn(0); 123b147fbf3SStefano Zampini } 124b147fbf3SStefano Zampini 1257087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 126a30f8f8cSSatish Balay { 127f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 128a30f8f8cSSatish Balay 129a30f8f8cSSatish Balay PetscFunctionBegin; 1309566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1319566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 132a30f8f8cSSatish Balay PetscFunctionReturn(0); 133a30f8f8cSSatish Balay } 134a30f8f8cSSatish Balay 1357087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 136a30f8f8cSSatish Balay { 137f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 138a30f8f8cSSatish Balay 139a30f8f8cSSatish Balay PetscFunctionBegin; 1409566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1419566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 142a30f8f8cSSatish Balay PetscFunctionReturn(0); 143a30f8f8cSSatish Balay } 144a30f8f8cSSatish Balay 145d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 146a30f8f8cSSatish Balay { \ 147a30f8f8cSSatish Balay brow = row/bs; \ 148a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 149a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 150a30f8f8cSSatish Balay bcol = col/bs; \ 151a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 152a30f8f8cSSatish Balay low = 0; high = nrow; \ 153a30f8f8cSSatish Balay while (high-low > 3) { \ 154a30f8f8cSSatish Balay t = (low+high)/2; \ 155a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 156a30f8f8cSSatish Balay else low = t; \ 157a30f8f8cSSatish Balay } \ 158a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 159a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 160a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 161a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 162a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 163a30f8f8cSSatish Balay else *bap = value; \ 164a30f8f8cSSatish Balay goto a_noinsert; \ 165a30f8f8cSSatish Balay } \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 1685f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 169fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 170a30f8f8cSSatish Balay N = nrow++ - 1; \ 171a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 1729566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1)); \ 1739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \ 1749566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \ 175a30f8f8cSSatish Balay rp[_i] = bcol; \ 176a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 177e56f5c9eSBarry Smith A->nonzerostate++;\ 178a30f8f8cSSatish Balay a_noinsert:; \ 179a30f8f8cSSatish Balay ailen[brow] = nrow; \ 180a30f8f8cSSatish Balay } 181e5e170daSBarry Smith 182d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 183a30f8f8cSSatish Balay { \ 184a30f8f8cSSatish Balay brow = row/bs; \ 185a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 186a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 187a30f8f8cSSatish Balay bcol = col/bs; \ 188a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 189a30f8f8cSSatish Balay low = 0; high = nrow; \ 190a30f8f8cSSatish Balay while (high-low > 3) { \ 191a30f8f8cSSatish Balay t = (low+high)/2; \ 192a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 193a30f8f8cSSatish Balay else low = t; \ 194a30f8f8cSSatish Balay } \ 195a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 196a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 197a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 198a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 199a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 200a30f8f8cSSatish Balay else *bap = value; \ 201a30f8f8cSSatish Balay goto b_noinsert; \ 202a30f8f8cSSatish Balay } \ 203a30f8f8cSSatish Balay } \ 204a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2055f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 206fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 207a30f8f8cSSatish Balay N = nrow++ - 1; \ 208a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2099566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1)); \ 2109566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \ 2119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \ 212a30f8f8cSSatish Balay rp[_i] = bcol; \ 213a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 214e56f5c9eSBarry Smith B->nonzerostate++;\ 215a30f8f8cSSatish Balay b_noinsert:; \ 216a30f8f8cSSatish Balay bilen[brow] = nrow; \ 217a30f8f8cSSatish Balay } 218a30f8f8cSSatish Balay 219a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 220476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 221a30f8f8cSSatish Balay */ 222dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 223a30f8f8cSSatish Balay { 224a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 225a30f8f8cSSatish Balay MatScalar value; 226ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2271302d50aSBarry Smith PetscInt i,j,row,col; 228d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 229d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 230d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 231a30f8f8cSSatish Balay 232a30f8f8cSSatish Balay /* Some Variables required in the macro */ 233a30f8f8cSSatish Balay Mat A = baij->A; 234a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2351302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 236a30f8f8cSSatish Balay MatScalar *aa =a->a; 237a30f8f8cSSatish Balay 238a30f8f8cSSatish Balay Mat B = baij->B; 239a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2401302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 241a30f8f8cSSatish Balay MatScalar *ba =b->a; 242a30f8f8cSSatish Balay 2431302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2441302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 245a30f8f8cSSatish Balay MatScalar *ap,*bap; 246a30f8f8cSSatish Balay 247a30f8f8cSSatish Balay /* for stash */ 2480298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2490298fd71SBarry Smith MatScalar *v_loc = NULL; 250a30f8f8cSSatish Balay 251a30f8f8cSSatish Balay PetscFunctionBegin; 252a30f8f8cSSatish Balay if (!baij->donotstash) { 25359ffdab8SBarry Smith if (n > baij->n_loc) { 2549566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 2559566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 2569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&baij->in_loc)); 2579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&baij->v_loc)); 25826fbe8dcSKarl Rupp 25959ffdab8SBarry Smith baij->n_loc = n; 26059ffdab8SBarry Smith } 26159ffdab8SBarry Smith in_loc = baij->in_loc; 26259ffdab8SBarry Smith v_loc = baij->v_loc; 263a30f8f8cSSatish Balay } 264a30f8f8cSSatish Balay 265a30f8f8cSSatish Balay for (i=0; i<m; i++) { 266a30f8f8cSSatish Balay if (im[i] < 0) continue; 2675f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 268a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 269a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 270a30f8f8cSSatish Balay for (j=0; j<n; j++) { 27101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 27201b2bd88SHong Zhang if (a->ignore_ltriangular) { 27301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 27426fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 27501b2bd88SHong Zhang } 276a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 277a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 278a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 279a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 280db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 281db4deed7SKarl Rupp else value = v[i+j*m]; 282d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 2839566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 284a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2855f80ce2aSJacob Faibussowitsch else PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1); 286a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 287a30f8f8cSSatish Balay if (mat->was_assembled) { 288a30f8f8cSSatish Balay if (!baij->colmap) { 2899566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 290a30f8f8cSSatish Balay } 291a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2929566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]/bs + 1,&col)); 29371730473SSatish Balay col = col - 1; 294a30f8f8cSSatish Balay #else 29571730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 296a30f8f8cSSatish Balay #endif 297a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 2989566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 299a30f8f8cSSatish Balay col = in[j]; 300a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 301a30f8f8cSSatish Balay B = baij->B; 302a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 303a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 304a30f8f8cSSatish Balay ba = b->a; 30571730473SSatish Balay } else col += in[j]%bs; 306a30f8f8cSSatish Balay } else col = in[j]; 307db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 308db4deed7SKarl Rupp else value = v[i+j*m]; 309d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 3109566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 311a30f8f8cSSatish Balay } 312a30f8f8cSSatish Balay } 313a30f8f8cSSatish Balay } else { /* off processor entry */ 3145f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 315a30f8f8cSSatish Balay if (!baij->donotstash) { 3165080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 317a30f8f8cSSatish Balay n_loc = 0; 318a30f8f8cSSatish Balay for (j=0; j<n; j++) { 319f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 320a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 321a30f8f8cSSatish Balay if (roworiented) { 322a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 323a30f8f8cSSatish Balay } else { 324a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 325a30f8f8cSSatish Balay } 326a30f8f8cSSatish Balay n_loc++; 327a30f8f8cSSatish Balay } 3289566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE)); 329a30f8f8cSSatish Balay } 330a30f8f8cSSatish Balay } 331a30f8f8cSSatish Balay } 332a30f8f8cSSatish Balay PetscFunctionReturn(0); 333a30f8f8cSSatish Balay } 334a30f8f8cSSatish Balay 3359fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 33636bd2089SBarry Smith { 33736bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 33836bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 33936bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 34036bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34136bd2089SBarry Smith PetscBool roworiented=a->roworiented; 34236bd2089SBarry Smith const PetscScalar *value = v; 34336bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 34436bd2089SBarry Smith 34536bd2089SBarry Smith PetscFunctionBegin; 34636bd2089SBarry Smith if (col < row) { 34736bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 34836bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 34936bd2089SBarry Smith } 35036bd2089SBarry Smith rp = aj + ai[row]; 35136bd2089SBarry Smith ap = aa + bs2*ai[row]; 35236bd2089SBarry Smith rmax = imax[row]; 35336bd2089SBarry Smith nrow = ailen[row]; 35436bd2089SBarry Smith value = v; 35536bd2089SBarry Smith low = 0; 35636bd2089SBarry Smith high = nrow; 35736bd2089SBarry Smith 35836bd2089SBarry Smith while (high-low > 7) { 35936bd2089SBarry Smith t = (low+high)/2; 36036bd2089SBarry Smith if (rp[t] > col) high = t; 36136bd2089SBarry Smith else low = t; 36236bd2089SBarry Smith } 36336bd2089SBarry Smith for (i=low; i<high; i++) { 36436bd2089SBarry Smith if (rp[i] > col) break; 36536bd2089SBarry Smith if (rp[i] == col) { 36636bd2089SBarry Smith bap = ap + bs2*i; 36736bd2089SBarry Smith if (roworiented) { 36836bd2089SBarry Smith if (is == ADD_VALUES) { 36936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37136bd2089SBarry Smith bap[jj] += *value++; 37236bd2089SBarry Smith } 37336bd2089SBarry Smith } 37436bd2089SBarry Smith } else { 37536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37736bd2089SBarry Smith bap[jj] = *value++; 37836bd2089SBarry Smith } 37936bd2089SBarry Smith } 38036bd2089SBarry Smith } 38136bd2089SBarry Smith } else { 38236bd2089SBarry Smith if (is == ADD_VALUES) { 38336bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 38436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38536bd2089SBarry Smith *bap++ += *value++; 38636bd2089SBarry Smith } 38736bd2089SBarry Smith } 38836bd2089SBarry Smith } else { 38936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39136bd2089SBarry Smith *bap++ = *value++; 39236bd2089SBarry Smith } 39336bd2089SBarry Smith } 39436bd2089SBarry Smith } 39536bd2089SBarry Smith } 39636bd2089SBarry Smith goto noinsert2; 39736bd2089SBarry Smith } 39836bd2089SBarry Smith } 39936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4005f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 40136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40236bd2089SBarry Smith N = nrow++ - 1; high++; 40336bd2089SBarry Smith /* shift up all the later entries in this row */ 4049566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 4059566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 40636bd2089SBarry Smith rp[i] = col; 40736bd2089SBarry Smith bap = ap + bs2*i; 40836bd2089SBarry Smith if (roworiented) { 40936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 41136bd2089SBarry Smith bap[jj] = *value++; 41236bd2089SBarry Smith } 41336bd2089SBarry Smith } 41436bd2089SBarry Smith } else { 41536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 41736bd2089SBarry Smith *bap++ = *value++; 41836bd2089SBarry Smith } 41936bd2089SBarry Smith } 42036bd2089SBarry Smith } 42136bd2089SBarry Smith noinsert2:; 42236bd2089SBarry Smith ailen[row] = nrow; 42336bd2089SBarry Smith PetscFunctionReturn(0); 42436bd2089SBarry Smith } 42536bd2089SBarry Smith 42636bd2089SBarry Smith /* 42736bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 42836bd2089SBarry Smith */ 4299fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 43036bd2089SBarry Smith { 43136bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 43236bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 43336bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 43436bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 43536bd2089SBarry Smith PetscBool roworiented=a->roworiented; 43636bd2089SBarry Smith const PetscScalar *value = v; 43736bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 43836bd2089SBarry Smith 43936bd2089SBarry Smith PetscFunctionBegin; 44036bd2089SBarry Smith rp = aj + ai[row]; 44136bd2089SBarry Smith ap = aa + bs2*ai[row]; 44236bd2089SBarry Smith rmax = imax[row]; 44336bd2089SBarry Smith nrow = ailen[row]; 44436bd2089SBarry Smith low = 0; 44536bd2089SBarry Smith high = nrow; 44636bd2089SBarry Smith value = v; 44736bd2089SBarry Smith while (high-low > 7) { 44836bd2089SBarry Smith t = (low+high)/2; 44936bd2089SBarry Smith if (rp[t] > col) high = t; 45036bd2089SBarry Smith else low = t; 45136bd2089SBarry Smith } 45236bd2089SBarry Smith for (i=low; i<high; i++) { 45336bd2089SBarry Smith if (rp[i] > col) break; 45436bd2089SBarry Smith if (rp[i] == col) { 45536bd2089SBarry Smith bap = ap + bs2*i; 45636bd2089SBarry Smith if (roworiented) { 45736bd2089SBarry Smith if (is == ADD_VALUES) { 45836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 45936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46036bd2089SBarry Smith bap[jj] += *value++; 46136bd2089SBarry Smith } 46236bd2089SBarry Smith } 46336bd2089SBarry Smith } else { 46436bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46536bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46636bd2089SBarry Smith bap[jj] = *value++; 46736bd2089SBarry Smith } 46836bd2089SBarry Smith } 46936bd2089SBarry Smith } 47036bd2089SBarry Smith } else { 47136bd2089SBarry Smith if (is == ADD_VALUES) { 47236bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 47336bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 47436bd2089SBarry Smith bap[jj] += value[jj]; 47536bd2089SBarry Smith } 47636bd2089SBarry Smith bap += bs; 47736bd2089SBarry Smith } 47836bd2089SBarry Smith } else { 47936bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48136bd2089SBarry Smith bap[jj] = value[jj]; 48236bd2089SBarry Smith } 48336bd2089SBarry Smith bap += bs; 48436bd2089SBarry Smith } 48536bd2089SBarry Smith } 48636bd2089SBarry Smith } 48736bd2089SBarry Smith goto noinsert2; 48836bd2089SBarry Smith } 48936bd2089SBarry Smith } 49036bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4915f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 49236bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 49336bd2089SBarry Smith N = nrow++ - 1; high++; 49436bd2089SBarry Smith /* shift up all the later entries in this row */ 4959566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 4969566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 49736bd2089SBarry Smith rp[i] = col; 49836bd2089SBarry Smith bap = ap + bs2*i; 49936bd2089SBarry Smith if (roworiented) { 50036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50136bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 50236bd2089SBarry Smith bap[jj] = *value++; 50336bd2089SBarry Smith } 50436bd2089SBarry Smith } 50536bd2089SBarry Smith } else { 50636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 50836bd2089SBarry Smith *bap++ = *value++; 50936bd2089SBarry Smith } 51036bd2089SBarry Smith } 51136bd2089SBarry Smith } 51236bd2089SBarry Smith noinsert2:; 51336bd2089SBarry Smith ailen[row] = nrow; 51436bd2089SBarry Smith PetscFunctionReturn(0); 51536bd2089SBarry Smith } 51636bd2089SBarry Smith 51736bd2089SBarry Smith /* 51836bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 51936bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 52036bd2089SBarry Smith */ 521dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 522a30f8f8cSSatish Balay { 5230880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 524f15d580aSBarry Smith const MatScalar *value; 525f15d580aSBarry Smith MatScalar *barray =baij->barray; 526ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 527899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 528476417e5SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 529476417e5SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 5300880e062SHong Zhang 531a30f8f8cSSatish Balay PetscFunctionBegin; 5320880e062SHong Zhang if (!barray) { 5339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2,&barray)); 5340880e062SHong Zhang baij->barray = barray; 5350880e062SHong Zhang } 5360880e062SHong Zhang 5370880e062SHong Zhang if (roworiented) { 5380880e062SHong Zhang stepval = (n-1)*bs; 5390880e062SHong Zhang } else { 5400880e062SHong Zhang stepval = (m-1)*bs; 5410880e062SHong Zhang } 5420880e062SHong Zhang for (i=0; i<m; i++) { 5430880e062SHong Zhang if (im[i] < 0) continue; 5446bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 5450880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5460880e062SHong Zhang row = im[i] - rstart; 5470880e062SHong Zhang for (j=0; j<n; j++) { 548f3f98c53SJed Brown if (im[i] > in[j]) { 549f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 550e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 551f3f98c53SJed Brown } 5520880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5530880e062SHong Zhang if ((roworiented) && (n == 1)) { 554f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 5550880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 556f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 5570880e062SHong Zhang } else { /* Here a copy is required */ 5580880e062SHong Zhang if (roworiented) { 5590880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 5600880e062SHong Zhang } else { 5610880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 5620880e062SHong Zhang } 5630880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5640880e062SHong Zhang for (jj=0; jj<bs; jj++) { 5650880e062SHong Zhang *barray++ = *value++; 5660880e062SHong Zhang } 5670880e062SHong Zhang } 5680880e062SHong Zhang barray -=bs2; 5690880e062SHong Zhang } 5700880e062SHong Zhang 5710880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5720880e062SHong Zhang col = in[j] - cstart; 5739566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j])); 57426fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 5756bdcaf15SBarry Smith else PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1); 5760880e062SHong Zhang else { 5770880e062SHong Zhang if (mat->was_assembled) { 5780880e062SHong Zhang if (!baij->colmap) { 5799566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 5800880e062SHong Zhang } 5810880e062SHong Zhang 5822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5830880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5841302d50aSBarry Smith { PetscInt data; 5859566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data)); 58608401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5870880e062SHong Zhang } 5880880e062SHong Zhang #else 58908401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5900880e062SHong Zhang #endif 5910880e062SHong Zhang #endif 5920880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5939566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col)); 5940880e062SHong Zhang col = (col - 1)/bs; 5950880e062SHong Zhang #else 5960880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5970880e062SHong Zhang #endif 5980880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 5999566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6000880e062SHong Zhang col = in[j]; 6010880e062SHong Zhang } 60226fbe8dcSKarl Rupp } else col = in[j]; 6039566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j])); 6040880e062SHong Zhang } 6050880e062SHong Zhang } 6060880e062SHong Zhang } else { 6075f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 6080880e062SHong Zhang if (!baij->donotstash) { 6090880e062SHong Zhang if (roworiented) { 6109566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 6110880e062SHong Zhang } else { 6129566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 6130880e062SHong Zhang } 6140880e062SHong Zhang } 6150880e062SHong Zhang } 6160880e062SHong Zhang } 6170880e062SHong Zhang PetscFunctionReturn(0); 618a30f8f8cSSatish Balay } 619a30f8f8cSSatish Balay 6201302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 621a30f8f8cSSatish Balay { 622f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 623d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 624d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 625a30f8f8cSSatish Balay 626a30f8f8cSSatish Balay PetscFunctionBegin; 627a30f8f8cSSatish Balay for (i=0; i<m; i++) { 62854c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 62954c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1); 630a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 631a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 632a30f8f8cSSatish Balay for (j=0; j<n; j++) { 63354c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 63454c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1); 635a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 636a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6379566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j)); 638a30f8f8cSSatish Balay } else { 639a30f8f8cSSatish Balay if (!baij->colmap) { 6409566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 641a30f8f8cSSatish Balay } 642a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 6439566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,idxn[j]/bs+1,&data)); 644a30f8f8cSSatish Balay data--; 645a30f8f8cSSatish Balay #else 646a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 647a30f8f8cSSatish Balay #endif 648a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 649a30f8f8cSSatish Balay else { 650a30f8f8cSSatish Balay col = data + idxn[j]%bs; 6519566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j)); 652a30f8f8cSSatish Balay } 653a30f8f8cSSatish Balay } 654a30f8f8cSSatish Balay } 655f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay PetscFunctionReturn(0); 658a30f8f8cSSatish Balay } 659a30f8f8cSSatish Balay 660dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 661a30f8f8cSSatish Balay { 662a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 663a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 664a30f8f8cSSatish Balay 665a30f8f8cSSatish Balay PetscFunctionBegin; 666a30f8f8cSSatish Balay if (baij->size == 1) { 6679566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A,type,norm)); 668a30f8f8cSSatish Balay } else { 669a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2,&lnorm2)); 6719566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A,type,lnorm2)); 672a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 6739566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B,type,lnorm2)); 674a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 6751c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat))); 6768f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 6779566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 6780b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6790b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6800b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6810b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 682899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 683d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6840b8dc8d2SHong Zhang MatScalar *v; 6850b8dc8d2SHong Zhang 6869566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2)); 6879566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum,mat->cmap->N)); 6880b8dc8d2SHong Zhang /* Amat */ 6890b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6900b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6910b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6920b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6930b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6940b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6950b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6960b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6970b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6980b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6990b8dc8d2SHong Zhang /* non-diagonal block */ 7000b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 7010b8dc8d2SHong Zhang } 7020b8dc8d2SHong Zhang } 7030b8dc8d2SHong Zhang } 7049566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz*bs*bs)); 7050b8dc8d2SHong Zhang } 7060b8dc8d2SHong Zhang /* Bmat */ 7070b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 7080b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7090b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7100b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 7110b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7120b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 7130b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7140b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7150b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7160b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7170b8dc8d2SHong Zhang rsum[grow+row] += vabs; 7180b8dc8d2SHong Zhang } 7190b8dc8d2SHong Zhang } 7200b8dc8d2SHong Zhang } 7219566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz*bs*bs)); 7220b8dc8d2SHong Zhang } 7231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat))); 7240b8dc8d2SHong Zhang *norm = 0.0; 725d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 7260b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7270b8dc8d2SHong Zhang } 7289566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum,rsum2)); 729f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 730a30f8f8cSSatish Balay } 731a30f8f8cSSatish Balay PetscFunctionReturn(0); 732a30f8f8cSSatish Balay } 733a30f8f8cSSatish Balay 734dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 735a30f8f8cSSatish Balay { 736a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 7371302d50aSBarry Smith PetscInt nstash,reallocs; 738a30f8f8cSSatish Balay 739a30f8f8cSSatish Balay PetscFunctionBegin; 74026fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 741a30f8f8cSSatish Balay 7429566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 7439566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs)); 7449566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 7459566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 7469566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 7479566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 748a30f8f8cSSatish Balay PetscFunctionReturn(0); 749a30f8f8cSSatish Balay } 750a30f8f8cSSatish Balay 751dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 752a30f8f8cSSatish Balay { 753a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 754a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 75513f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 756e44c0bd4SBarry Smith PetscInt *row,*col; 757ace3abfcSBarry Smith PetscBool other_disassembled; 75813f74950SBarry Smith PetscMPIInt n; 759ace3abfcSBarry Smith PetscBool r1,r2,r3; 760a30f8f8cSSatish Balay MatScalar *val; 761a30f8f8cSSatish Balay 76291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 763a30f8f8cSSatish Balay PetscFunctionBegin; 7644cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 765a30f8f8cSSatish Balay while (1) { 7669566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 767a30f8f8cSSatish Balay if (!flg) break; 768a30f8f8cSSatish Balay 769a30f8f8cSSatish Balay for (i=0; i<n;) { 770a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 77126fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 77226fbe8dcSKarl Rupp if (row[j] != rstart) break; 77326fbe8dcSKarl Rupp } 774a30f8f8cSSatish Balay if (j < n) ncols = j-i; 775a30f8f8cSSatish Balay else ncols = n-i; 776a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7779566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 778a30f8f8cSSatish Balay i = j; 779a30f8f8cSSatish Balay } 780a30f8f8cSSatish Balay } 7819566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 782a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 783a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 784a30f8f8cSSatish Balay restore the original flags */ 785a30f8f8cSSatish Balay r1 = baij->roworiented; 786a30f8f8cSSatish Balay r2 = a->roworiented; 78791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 78826fbe8dcSKarl Rupp 789a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 790a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 79126fbe8dcSKarl Rupp 79291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 793a30f8f8cSSatish Balay while (1) { 7949566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg)); 795a30f8f8cSSatish Balay if (!flg) break; 796a30f8f8cSSatish Balay 797a30f8f8cSSatish Balay for (i=0; i<n;) { 798a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 79926fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 80026fbe8dcSKarl Rupp if (row[j] != rstart) break; 80126fbe8dcSKarl Rupp } 802a30f8f8cSSatish Balay if (j < n) ncols = j-i; 803a30f8f8cSSatish Balay else ncols = n-i; 8049566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode)); 805a30f8f8cSSatish Balay i = j; 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay } 8089566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 80926fbe8dcSKarl Rupp 810a30f8f8cSSatish Balay baij->roworiented = r1; 811a30f8f8cSSatish Balay a->roworiented = r2; 81226fbe8dcSKarl Rupp 81391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 814a30f8f8cSSatish Balay } 815a30f8f8cSSatish Balay 8169566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A,mode)); 8179566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A,mode)); 818a30f8f8cSSatish Balay 819a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8206aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 821a30f8f8cSSatish Balay /* 822a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 823a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 824a30f8f8cSSatish Balay */ 825a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 8261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat))); 827a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 8289566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay } 831a30f8f8cSSatish Balay 832a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 8339566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ 834a30f8f8cSSatish Balay } 8359566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B,mode)); 8369566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B,mode)); 837a30f8f8cSSatish Balay 8389566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues,baij->rowindices)); 83926fbe8dcSKarl Rupp 840f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8414f9cfa9eSBarry Smith 8424f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8434f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 844e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 8451c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat))); 846e56f5c9eSBarry Smith } 847a30f8f8cSSatish Balay PetscFunctionReturn(0); 848a30f8f8cSSatish Balay } 849a30f8f8cSSatish Balay 850dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 8519804daf3SBarry Smith #include <petscdraw.h> 8526849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 853a30f8f8cSSatish Balay { 854a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 855d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8567da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 857ace3abfcSBarry Smith PetscBool iascii,isdraw; 858b0a32e0cSBarry Smith PetscViewer sviewer; 859f3ef73ceSBarry Smith PetscViewerFormat format; 860a30f8f8cSSatish Balay 861a30f8f8cSSatish Balay PetscFunctionBegin; 8629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 8639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 86432077d6dSBarry Smith if (iascii) { 8659566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 866456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 867a30f8f8cSSatish Balay MatInfo info; 8689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 8699566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 8709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 8719566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory)); 8729566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A,MAT_LOCAL,&info)); 8739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 8749566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B,MAT_LOCAL,&info)); 8759566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 8769566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8779566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 8789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n")); 8799566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx,viewer)); 880a30f8f8cSSatish Balay PetscFunctionReturn(0); 881fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 8829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," block size is %" PetscInt_FMT "\n",bs)); 883a30f8f8cSSatish Balay PetscFunctionReturn(0); 884c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 885c1490034SHong Zhang PetscFunctionReturn(0); 886a30f8f8cSSatish Balay } 887a30f8f8cSSatish Balay } 888a30f8f8cSSatish Balay 889a30f8f8cSSatish Balay if (isdraw) { 890b0a32e0cSBarry Smith PetscDraw draw; 891ace3abfcSBarry Smith PetscBool isnull; 8929566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 8939566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 89445f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 895a30f8f8cSSatish Balay } 896a30f8f8cSSatish Balay 8977da1fb6eSBarry Smith { 898a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 899a30f8f8cSSatish Balay Mat A; 90065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 90165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 902d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 903a30f8f8cSSatish Balay MatScalar *a; 9043e219373SBarry Smith const char *matname; 905a30f8f8cSSatish Balay 906f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9079566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 908dd400576SPatrick Sanan if (rank == 0) { 9099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 910a30f8f8cSSatish Balay } else { 9119566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 912a30f8f8cSSatish Balay } 9139566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPISBAIJ)); 9149566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL)); 9159566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE)); 9169566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 917a30f8f8cSSatish Balay 918a30f8f8cSSatish Balay /* copy over the A part */ 91965d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 920a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 9219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&rvals)); 922a30f8f8cSSatish Balay 923a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 924e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 92526fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 926a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 927e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 928a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 9299566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES)); 93026fbe8dcSKarl Rupp col++; 93126fbe8dcSKarl Rupp a += bs; 932a30f8f8cSSatish Balay } 933a30f8f8cSSatish Balay } 934a30f8f8cSSatish Balay } 935a30f8f8cSSatish Balay /* copy over the B part */ 93665d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 93765d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 938a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 939e9f7bc9eSHong Zhang 940e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 94126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 942a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 943a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 944a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 9459566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES)); 94626fbe8dcSKarl Rupp col++; 94726fbe8dcSKarl Rupp a += bs; 948a30f8f8cSSatish Balay } 949a30f8f8cSSatish Balay } 950a30f8f8cSSatish Balay } 9519566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 9539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 954a30f8f8cSSatish Balay /* 955a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 956b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 957a30f8f8cSSatish Balay */ 9589566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 9599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)mat,&matname)); 960dd400576SPatrick Sanan if (rank == 0) { 9619566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname)); 9629566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer)); 963a30f8f8cSSatish Balay } 9649566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 9659566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9669566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 967a30f8f8cSSatish Balay } 968a30f8f8cSSatish Balay PetscFunctionReturn(0); 969a30f8f8cSSatish Balay } 970a30f8f8cSSatish Balay 971618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 972618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 973d1654148SHong Zhang 974dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 975a30f8f8cSSatish Balay { 976ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 977a30f8f8cSSatish Balay 978a30f8f8cSSatish Balay PetscFunctionBegin; 9799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 9809566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 9819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 9829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 983d1654148SHong Zhang if (iascii || isdraw || issocket) { 9849566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer)); 985*1baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat,viewer)); 986a30f8f8cSSatish Balay PetscFunctionReturn(0); 987a30f8f8cSSatish Balay } 988a30f8f8cSSatish Balay 989dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 990a30f8f8cSSatish Balay { 991a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 992a30f8f8cSSatish Balay 993a30f8f8cSSatish Balay PetscFunctionBegin; 994a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 995c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 996a30f8f8cSSatish Balay #endif 9979566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 9989566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->bstash)); 9999566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->A)); 10009566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->B)); 1001a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 10029566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&baij->colmap)); 1003a30f8f8cSSatish Balay #else 10049566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->colmap)); 1005a30f8f8cSSatish Balay #endif 10069566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->garray)); 10079566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->lvec)); 10089566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->Mvctx)); 10099566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec0)); 10109566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec0b)); 10119566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1)); 10129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1a)); 10139566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1b)); 10149566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->sMvctx)); 10159566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues,baij->rowindices)); 10169566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->barray)); 10179566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->hd)); 10189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->diag)); 10199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->bb1)); 10209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->xx1)); 1021ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 10229566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->setvaluescopy)); 1023a30f8f8cSSatish Balay #endif 10249566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 10259566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 10269566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->rangebs)); 10279566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1028901853e0SKris Buschelman 10299566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 10309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL)); 10319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL)); 10329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL)); 10339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL)); 10346214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 10359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL)); 10366214f412SHong Zhang #endif 1037d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 10389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL)); 1039d24d4204SJose E. Roman #endif 10409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL)); 10419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL)); 1042a30f8f8cSSatish Balay PetscFunctionReturn(0); 1043a30f8f8cSSatish Balay } 1044a30f8f8cSSatish Balay 1045547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1046547795f9SHong Zhang { 1047547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1048eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 10496de40e93SBarry Smith PetscScalar *from; 10506de40e93SBarry Smith const PetscScalar *x; 1051547795f9SHong Zhang 1052547795f9SHong Zhang PetscFunctionBegin; 1053547795f9SHong Zhang /* diagonal part */ 10549566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,a->slvec1a)); 10559566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b,0.0)); 1056547795f9SHong Zhang 1057547795f9SHong Zhang /* subdiagonal part */ 10585f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose,PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s",((PetscObject)a->B)->type_name); 10599566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b)); 1060547795f9SHong Zhang 1061547795f9SHong Zhang /* copy x into the vec slvec0 */ 10629566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0,&from)); 10639566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 1064547795f9SHong Zhang 10659566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from,x,bs*mbs)); 10669566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0,&from)); 10679566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 1068547795f9SHong Zhang 10699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 10709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 1071547795f9SHong Zhang /* supperdiagonal part */ 10729566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy)); 1073547795f9SHong Zhang PetscFunctionReturn(0); 1074547795f9SHong Zhang } 1075547795f9SHong Zhang 1076dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1077a9d4b620SHong Zhang { 1078a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1079eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1080d9ca1df4SBarry Smith PetscScalar *from; 1081d9ca1df4SBarry Smith const PetscScalar *x; 1082a9d4b620SHong Zhang 1083a9d4b620SHong Zhang PetscFunctionBegin; 1084a9d4b620SHong Zhang /* diagonal part */ 10859566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,a->slvec1a)); 10869566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b,0.0)); 1087a9d4b620SHong Zhang 1088a9d4b620SHong Zhang /* subdiagonal part */ 10899566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->slvec0b)); 1090fc165ae2SBarry Smith 1091a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10929566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0,&from)); 10939566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 1094a9d4b620SHong Zhang 10959566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from,x,bs*mbs)); 10969566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0,&from)); 10979566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 1098fc165ae2SBarry Smith 10999566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 11009566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 1101a9d4b620SHong Zhang /* supperdiagonal part */ 11029566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy)); 1103a9d4b620SHong Zhang PetscFunctionReturn(0); 1104a9d4b620SHong Zhang } 1105a9d4b620SHong Zhang 1106eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz) 1107eb1ec7c1SStefano Zampini { 1108eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1109eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1110eb1ec7c1SStefano Zampini PetscScalar *from,zero=0.0; 1111eb1ec7c1SStefano Zampini const PetscScalar *x; 1112eb1ec7c1SStefano Zampini 1113eb1ec7c1SStefano Zampini PetscFunctionBegin; 1114eb1ec7c1SStefano Zampini /* diagonal part */ 11159566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a)); 11169566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b,zero)); 1117eb1ec7c1SStefano Zampini 1118eb1ec7c1SStefano Zampini /* subdiagonal part */ 11195f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose,PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s",((PetscObject)a->B)->type_name); 11209566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b)); 1121eb1ec7c1SStefano Zampini 1122eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11239566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0,&from)); 11249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 11259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from,x,bs*mbs)); 11269566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0,&from)); 1127eb1ec7c1SStefano Zampini 11289566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 11299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 11309566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 1131eb1ec7c1SStefano Zampini 1132eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11339566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz)); 1134eb1ec7c1SStefano Zampini PetscFunctionReturn(0); 1135eb1ec7c1SStefano Zampini } 1136eb1ec7c1SStefano Zampini 1137dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1138a30f8f8cSSatish Balay { 1139de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1140d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1141d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1142d9ca1df4SBarry Smith const PetscScalar *x; 1143a9d4b620SHong Zhang 1144a9d4b620SHong Zhang PetscFunctionBegin; 1145a9d4b620SHong Zhang /* diagonal part */ 11469566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a)); 11479566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b,zero)); 1148a9d4b620SHong Zhang 1149a9d4b620SHong Zhang /* subdiagonal part */ 11509566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->slvec0b)); 1151a9d4b620SHong Zhang 1152a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11539566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0,&from)); 11549566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 11559566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from,x,bs*mbs)); 11569566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0,&from)); 1157a9d4b620SHong Zhang 11589566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 11599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 11609566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 1161a9d4b620SHong Zhang 1162a9d4b620SHong Zhang /* supperdiagonal part */ 11639566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz)); 1164a9d4b620SHong Zhang PetscFunctionReturn(0); 1165a9d4b620SHong Zhang } 1166a9d4b620SHong Zhang 1167a30f8f8cSSatish Balay /* 1168a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1169a30f8f8cSSatish Balay diagonal block 1170a30f8f8cSSatish Balay */ 1171dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1172a30f8f8cSSatish Balay { 1173a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1174a30f8f8cSSatish Balay 1175a30f8f8cSSatish Balay PetscFunctionBegin; 117608401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11779566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A,v)); 1178a30f8f8cSSatish Balay PetscFunctionReturn(0); 1179a30f8f8cSSatish Balay } 1180a30f8f8cSSatish Balay 1181f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1182a30f8f8cSSatish Balay { 1183a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1184a30f8f8cSSatish Balay 1185a30f8f8cSSatish Balay PetscFunctionBegin; 11869566063dSJacob Faibussowitsch PetscCall(MatScale(a->A,aa)); 11879566063dSJacob Faibussowitsch PetscCall(MatScale(a->B,aa)); 1188a30f8f8cSSatish Balay PetscFunctionReturn(0); 1189a30f8f8cSSatish Balay } 1190a30f8f8cSSatish Balay 11911302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1192a30f8f8cSSatish Balay { 1193d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1194d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1195d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1196d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1197899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1198d0d4cfc2SHong Zhang 1199a30f8f8cSSatish Balay PetscFunctionBegin; 12005f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1201d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1202d0d4cfc2SHong Zhang 1203d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1204d0d4cfc2SHong Zhang /* 1205d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1206d0d4cfc2SHong Zhang */ 1207d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1208d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1209d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1210d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1211d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 121226fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1213d0d4cfc2SHong Zhang } 12149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices)); 1215d0d4cfc2SHong Zhang } 1216d0d4cfc2SHong Zhang 12175f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1218d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1219d0d4cfc2SHong Zhang 1220d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1221f4259b30SLisandro Dalcin if (!v) {pvA = NULL; pvB = NULL;} 1222f4259b30SLisandro Dalcin if (!idx) {pcA = NULL; if (!v) pcB = NULL;} 12239566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA)); 12249566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB)); 1225d0d4cfc2SHong Zhang nztot = nzA + nzB; 1226d0d4cfc2SHong Zhang 1227d0d4cfc2SHong Zhang cmap = mat->garray; 1228d0d4cfc2SHong Zhang if (v || idx) { 1229d0d4cfc2SHong Zhang if (nztot) { 1230d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1231d0d4cfc2SHong Zhang PetscInt imark = -1; 1232d0d4cfc2SHong Zhang if (v) { 1233d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1234d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1235d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1236d0d4cfc2SHong Zhang else break; 1237d0d4cfc2SHong Zhang } 1238d0d4cfc2SHong Zhang imark = i; 1239d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1240d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1241d0d4cfc2SHong Zhang } 1242d0d4cfc2SHong Zhang if (idx) { 1243d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1244d0d4cfc2SHong Zhang if (imark > -1) { 1245d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1246d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1247d0d4cfc2SHong Zhang } 1248d0d4cfc2SHong Zhang } else { 1249d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 125026fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1251d0d4cfc2SHong Zhang else break; 1252d0d4cfc2SHong Zhang } 1253d0d4cfc2SHong Zhang imark = i; 1254d0d4cfc2SHong Zhang } 1255d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1256d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1257d0d4cfc2SHong Zhang } 1258d0d4cfc2SHong Zhang } else { 1259f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1260f4259b30SLisandro Dalcin if (v) *v = NULL; 1261d0d4cfc2SHong Zhang } 1262d0d4cfc2SHong Zhang } 1263d0d4cfc2SHong Zhang *nz = nztot; 12649566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA)); 12659566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB)); 1266a30f8f8cSSatish Balay PetscFunctionReturn(0); 1267a30f8f8cSSatish Balay } 1268a30f8f8cSSatish Balay 12691302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1270a30f8f8cSSatish Balay { 1271a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1272a30f8f8cSSatish Balay 1273a30f8f8cSSatish Balay PetscFunctionBegin; 12745f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1275a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1276a30f8f8cSSatish Balay PetscFunctionReturn(0); 1277a30f8f8cSSatish Balay } 1278a30f8f8cSSatish Balay 1279d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1280d0d4cfc2SHong Zhang { 1281d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1282d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1283d0d4cfc2SHong Zhang 1284d0d4cfc2SHong Zhang PetscFunctionBegin; 1285d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1286d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1287d0d4cfc2SHong Zhang } 1288d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1289d0d4cfc2SHong Zhang { 1290d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1291d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1292d0d4cfc2SHong Zhang 1293d0d4cfc2SHong Zhang PetscFunctionBegin; 1294d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1295d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1296d0d4cfc2SHong Zhang } 1297d0d4cfc2SHong Zhang 12982726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 12992726fb6dSPierre Jolivet { 13005f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 13015f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 13022726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data; 13032726fb6dSPierre Jolivet 13049566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13059566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13065f80ce2aSJacob Faibussowitsch } 13072726fb6dSPierre Jolivet PetscFunctionReturn(0); 13082726fb6dSPierre Jolivet } 13092726fb6dSPierre Jolivet 131099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 131199cafbc1SBarry Smith { 131299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 131399cafbc1SBarry Smith 131499cafbc1SBarry Smith PetscFunctionBegin; 13159566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13169566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 131799cafbc1SBarry Smith PetscFunctionReturn(0); 131899cafbc1SBarry Smith } 131999cafbc1SBarry Smith 132099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 132199cafbc1SBarry Smith { 132299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 132399cafbc1SBarry Smith 132499cafbc1SBarry Smith PetscFunctionBegin; 13259566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13269566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 132799cafbc1SBarry Smith PetscFunctionReturn(0); 132899cafbc1SBarry Smith } 132999cafbc1SBarry Smith 13307dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 133136032a97SHong Zhang Input: isrow - distributed(parallel), 133236032a97SHong Zhang iscol_local - locally owned (seq) 133336032a97SHong Zhang */ 133436032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13358f46ffcaSHong Zhang { 13368f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13378f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 133836032a97SHong Zhang 133936032a97SHong Zhang PetscFunctionBegin; 13409566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&sz1)); 13419566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local,&sz2)); 13421098a8e8SHong Zhang if (sz1 > sz2) { 13431098a8e8SHong Zhang *flg = PETSC_FALSE; 13441098a8e8SHong Zhang PetscFunctionReturn(0); 13451098a8e8SHong Zhang } 13468f46ffcaSHong Zhang 13479566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&ptr1)); 13489566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&ptr2)); 13498f46ffcaSHong Zhang 13509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1,&a1)); 13519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2,&a2)); 13529566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1,ptr1,sz1)); 13539566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2,ptr2,sz2)); 13549566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1,a1)); 13559566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2,a2)); 13568f46ffcaSHong Zhang 13578f46ffcaSHong Zhang nmatch=0; 13588f46ffcaSHong Zhang k = 0; 13598f46ffcaSHong Zhang for (i=0; i<sz1; i++) { 13608f46ffcaSHong Zhang for (j=k; j<sz2; j++) { 13618f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13628f46ffcaSHong Zhang k = j; nmatch++; 13638f46ffcaSHong Zhang break; 13648f46ffcaSHong Zhang } 13658f46ffcaSHong Zhang } 13668f46ffcaSHong Zhang } 13679566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&ptr1)); 13689566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&ptr2)); 13699566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13709566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13711098a8e8SHong Zhang if (nmatch < sz1) { 13721098a8e8SHong Zhang *flg = PETSC_FALSE; 13731098a8e8SHong Zhang } else { 13741098a8e8SHong Zhang *flg = PETSC_TRUE; 13751098a8e8SHong Zhang } 137636032a97SHong Zhang PetscFunctionReturn(0); 13778f46ffcaSHong Zhang } 137836032a97SHong Zhang 13797dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 138036032a97SHong Zhang { 138136032a97SHong Zhang IS iscol_local; 138236032a97SHong Zhang PetscInt csize; 138336032a97SHong Zhang PetscBool isequal; 138436032a97SHong Zhang 138536032a97SHong Zhang PetscFunctionBegin; 13869566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&csize)); 138736032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13889566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local)); 13895f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 139036032a97SHong Zhang } else { 1391068661f9SToby Isaac PetscBool issorted; 1392068661f9SToby Isaac 13939566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 13949566063dSJacob Faibussowitsch PetscCall(ISEqual_private(isrow,iscol_local,&isequal)); 13959566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 13965f80ce2aSJacob Faibussowitsch PetscCheck(isequal && issorted,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow and be sorted"); 13978f46ffcaSHong Zhang } 13988f46ffcaSHong Zhang 13997dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 14009566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat)); 14018f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 14029566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local)); 14039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14048f46ffcaSHong Zhang } 14058f46ffcaSHong Zhang PetscFunctionReturn(0); 14068f46ffcaSHong Zhang } 14078f46ffcaSHong Zhang 1408dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1409a30f8f8cSSatish Balay { 1410a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1411a30f8f8cSSatish Balay 1412a30f8f8cSSatish Balay PetscFunctionBegin; 14139566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14149566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 1415a30f8f8cSSatish Balay PetscFunctionReturn(0); 1416a30f8f8cSSatish Balay } 1417a30f8f8cSSatish Balay 1418dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1419a30f8f8cSSatish Balay { 1420a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1421a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 14223966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 1423a30f8f8cSSatish Balay 1424a30f8f8cSSatish Balay PetscFunctionBegin; 1425d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 142626fbe8dcSKarl Rupp 14279566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A,MAT_LOCAL,info)); 142826fbe8dcSKarl Rupp 1429a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1430a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 143126fbe8dcSKarl Rupp 14329566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B,MAT_LOCAL,info)); 143326fbe8dcSKarl Rupp 1434a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1435a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1436a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1437a30f8f8cSSatish Balay info->nz_used = isend[0]; 1438a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1439a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1440a30f8f8cSSatish Balay info->memory = isend[3]; 1441a30f8f8cSSatish Balay info->mallocs = isend[4]; 1442a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14431c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin))); 144426fbe8dcSKarl Rupp 1445a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1446a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1447a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1448a30f8f8cSSatish Balay info->memory = irecv[3]; 1449a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1450a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14511c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin))); 145226fbe8dcSKarl Rupp 1453a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1454a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1455a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1456a30f8f8cSSatish Balay info->memory = irecv[3]; 1457a30f8f8cSSatish Balay info->mallocs = irecv[4]; 145898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1459a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1460a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1461a30f8f8cSSatish Balay info->factor_mallocs = 0; 1462a30f8f8cSSatish Balay PetscFunctionReturn(0); 1463a30f8f8cSSatish Balay } 1464a30f8f8cSSatish Balay 1465ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1466a30f8f8cSSatish Balay { 1467a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1468d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1469a30f8f8cSSatish Balay 1470a30f8f8cSSatish Balay PetscFunctionBegin; 1471e98b92d7SKris Buschelman switch (op) { 1472512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1473e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1475a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1476c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1477e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147843674050SBarry Smith MatCheckPreallocated(A,1); 14799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 14809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 1481e98b92d7SKris Buschelman break; 1482e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 148343674050SBarry Smith MatCheckPreallocated(A,1); 14844e0d8c25SBarry Smith a->roworiented = flg; 148526fbe8dcSKarl Rupp 14869566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 14879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 1488e98b92d7SKris Buschelman break; 14898c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1490071fcb05SBarry Smith case MAT_SORTED_FULL: 14919566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 1492e98b92d7SKris Buschelman break; 1493e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14944e0d8c25SBarry Smith a->donotstash = flg; 1495e98b92d7SKris Buschelman break; 1496e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 14974e0d8c25SBarry Smith a->ht_flag = flg; 1498e98b92d7SKris Buschelman break; 14999a4540c5SBarry Smith case MAT_HERMITIAN: 150043674050SBarry Smith MatCheckPreallocated(A,1); 15019566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 15020f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1503eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1504547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1505eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1506eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1507eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1508eb1ec7c1SStefano Zampini A->symmetric = PETSC_FALSE; 1509eb1ec7c1SStefano Zampini } 15100f2140c7SStefano Zampini #endif 1511eeffb40dSHong Zhang break; 1512ffa07934SHong Zhang case MAT_SPD: 151377e54ba9SKris Buschelman case MAT_SYMMETRIC: 151443674050SBarry Smith MatCheckPreallocated(A,1); 15159566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 1516eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1517eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1518eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1519eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1520eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1521eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1522eb1ec7c1SStefano Zampini } 1523eb1ec7c1SStefano Zampini #endif 1524eeffb40dSHong Zhang break; 152577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 152643674050SBarry Smith MatCheckPreallocated(A,1); 15279566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 1528eeffb40dSHong Zhang break; 15299a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 15305f80ce2aSJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 15319566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 153277e54ba9SKris Buschelman break; 1533d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15344e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1535d0d4cfc2SHong Zhang break; 1536d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15374e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1538d0d4cfc2SHong Zhang break; 1539d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15404e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1541d0d4cfc2SHong Zhang break; 1542e98b92d7SKris Buschelman default: 154398921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1544a30f8f8cSSatish Balay } 1545a30f8f8cSSatish Balay PetscFunctionReturn(0); 1546a30f8f8cSSatish Balay } 1547a30f8f8cSSatish Balay 1548fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1549a30f8f8cSSatish Balay { 1550a30f8f8cSSatish Balay PetscFunctionBegin; 1551cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15529566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A,MAT_COPY_VALUES,B)); 1553cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15549566063dSJacob Faibussowitsch PetscCall(MatCopy(A,*B,SAME_NONZERO_PATTERN)); 1555fc4dec0aSBarry Smith } 15568115998fSBarry Smith PetscFunctionReturn(0); 1557a30f8f8cSSatish Balay } 1558a30f8f8cSSatish Balay 1559dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1560a30f8f8cSSatish Balay { 1561a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1562a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 15635e90f9d9SHong Zhang PetscInt nv,m,n; 1564ace3abfcSBarry Smith PetscBool flg; 1565a30f8f8cSSatish Balay 1566a30f8f8cSSatish Balay PetscFunctionBegin; 1567a30f8f8cSSatish Balay if (ll != rr) { 15689566063dSJacob Faibussowitsch PetscCall(VecEqual(ll,rr,&flg)); 15695f80ce2aSJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same"); 1570a30f8f8cSSatish Balay } 1571b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1572b3bf805bSHong Zhang 15739566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&m,&n)); 15745f80ce2aSJacob Faibussowitsch PetscCheck(m == n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same",m,n); 1575b3bf805bSHong Zhang 15769566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&nv)); 15775f80ce2aSJacob Faibussowitsch PetscCheck(nv==n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 15785e90f9d9SHong Zhang 15799566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD)); 15805e90f9d9SHong Zhang 15815e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 15829566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,ll,NULL)); 15835e90f9d9SHong Zhang 15845e90f9d9SHong Zhang /* scale the diagonal part */ 15859566063dSJacob Faibussowitsch PetscCall((*a->ops->diagonalscale)(a,ll,rr)); 1586a30f8f8cSSatish Balay 15875e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 15889566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD)); 15899566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,NULL,baij->lvec)); 1590a30f8f8cSSatish Balay PetscFunctionReturn(0); 1591a30f8f8cSSatish Balay } 1592a30f8f8cSSatish Balay 1593dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1594a30f8f8cSSatish Balay { 1595f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1596a30f8f8cSSatish Balay 1597a30f8f8cSSatish Balay PetscFunctionBegin; 15989566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 1599a30f8f8cSSatish Balay PetscFunctionReturn(0); 1600a30f8f8cSSatish Balay } 1601a30f8f8cSSatish Balay 16026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1603a30f8f8cSSatish Balay 1604ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1605a30f8f8cSSatish Balay { 1606a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1607a30f8f8cSSatish Balay Mat a,b,c,d; 1608ace3abfcSBarry Smith PetscBool flg; 1609a30f8f8cSSatish Balay 1610a30f8f8cSSatish Balay PetscFunctionBegin; 1611a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1612a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1613a30f8f8cSSatish Balay 16149566063dSJacob Faibussowitsch PetscCall(MatEqual(a,c,&flg)); 1615abc0a331SBarry Smith if (flg) { 16169566063dSJacob Faibussowitsch PetscCall(MatEqual(b,d,&flg)); 1617a30f8f8cSSatish Balay } 16181c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 1619a30f8f8cSSatish Balay PetscFunctionReturn(0); 1620a30f8f8cSSatish Balay } 1621a30f8f8cSSatish Balay 16223c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16233c896bc6SHong Zhang { 16244c7a3774SStefano Zampini PetscBool isbaij; 16253c896bc6SHong Zhang 16263c896bc6SHong Zhang PetscFunctionBegin; 16279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"")); 16285f80ce2aSJacob Faibussowitsch PetscCheck(isbaij,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 16293c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16303c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16319566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16329566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 16339566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16343c896bc6SHong Zhang } else { 16354c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16364c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16374c7a3774SStefano Zampini 16389566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A,b->A,str)); 16399566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B,b->B,str)); 16403c896bc6SHong Zhang } 16419566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16423c896bc6SHong Zhang PetscFunctionReturn(0); 16433c896bc6SHong Zhang } 16443c896bc6SHong Zhang 16454994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1646273d9f13SBarry Smith { 1647273d9f13SBarry Smith PetscFunctionBegin; 16489566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL)); 1649273d9f13SBarry Smith PetscFunctionReturn(0); 1650273d9f13SBarry Smith } 1651a5e6ed63SBarry Smith 16524fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16534fe895cdSHong Zhang { 16544fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16554fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16564fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16574fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16584fe895cdSHong Zhang 16594fe895cdSHong Zhang PetscFunctionBegin; 16604fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16614fe895cdSHong Zhang PetscScalar alpha = a; 16624fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 16634fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 16649566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz,&bnz)); 16658b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 16664fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 16674fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 16689566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz,&bnz)); 16698b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1671ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 16729566063dSJacob Faibussowitsch PetscCall(MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE)); 16739566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y,a,X,str)); 16749566063dSJacob Faibussowitsch PetscCall(MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE)); 16754fe895cdSHong Zhang } else { 16764de5dceeSHong Zhang Mat B; 16774de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 16785f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 16799566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 16809566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 16819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N,&nnz_d)); 16829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N,&nnz_o)); 16839566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B)); 16849566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name)); 16859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N)); 16869566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B,Y,Y)); 16879566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPISBAIJ)); 16889566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d)); 16899566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o)); 16909566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o)); 16919566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str)); 16929566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y,&B)); 16939566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 16949566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 16959566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 16969566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 16974fe895cdSHong Zhang } 16984fe895cdSHong Zhang PetscFunctionReturn(0); 16994fe895cdSHong Zhang } 17004fe895cdSHong Zhang 17017dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1702a5e6ed63SBarry Smith { 17031302d50aSBarry Smith PetscInt i; 1704afebec48SHong Zhang PetscBool flg; 1705a5e6ed63SBarry Smith 17066849ba73SBarry Smith PetscFunctionBegin; 17079566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B)); /* B[] are sbaij matrices */ 1708a5e6ed63SBarry Smith for (i=0; i<n; i++) { 17099566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i],icol[i],&flg)); 1710afebec48SHong Zhang if (!flg) { 17119566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 1712a5e6ed63SBarry Smith } 17134dcd73b1SHong Zhang } 1714a5e6ed63SBarry Smith PetscFunctionReturn(0); 1715a5e6ed63SBarry Smith } 1716a5e6ed63SBarry Smith 17177d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17187d68702bSBarry Smith { 17197d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17206f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17217d68702bSBarry Smith 17227d68702bSBarry Smith PetscFunctionBegin; 17236f33a894SBarry Smith if (!Y->preallocated) { 17249566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL)); 17256f33a894SBarry Smith } else if (!aij->nz) { 1726b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17279566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL)); 1728b83222d8SBarry Smith aij->nonew = nonew; 17297d68702bSBarry Smith } 17309566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 17317d68702bSBarry Smith PetscFunctionReturn(0); 17327d68702bSBarry Smith } 17337d68702bSBarry Smith 17343b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 17353b49f96aSBarry Smith { 17363b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 17373b49f96aSBarry Smith 17383b49f96aSBarry Smith PetscFunctionBegin; 17395f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 17409566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A,missing,d)); 17413b49f96aSBarry Smith if (d) { 17423b49f96aSBarry Smith PetscInt rstart; 17439566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,NULL)); 17443b49f96aSBarry Smith *d += rstart/A->rmap->bs; 17453b49f96aSBarry Smith 17463b49f96aSBarry Smith } 17473b49f96aSBarry Smith PetscFunctionReturn(0); 17483b49f96aSBarry Smith } 17493b49f96aSBarry Smith 1750a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1751a5b7ff6bSBarry Smith { 1752a5b7ff6bSBarry Smith PetscFunctionBegin; 1753a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1754a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1755a5b7ff6bSBarry Smith } 17563b49f96aSBarry Smith 1757a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17583964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1759a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1760a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1761a9d4b620SHong Zhang MatMult_MPISBAIJ, 176297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1763431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1764431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1765f4259b30SLisandro Dalcin NULL, 1766f4259b30SLisandro Dalcin NULL, 1767f4259b30SLisandro Dalcin NULL, 1768f4259b30SLisandro Dalcin /* 10*/ NULL, 1769f4259b30SLisandro Dalcin NULL, 1770f4259b30SLisandro Dalcin NULL, 177141f059aeSBarry Smith MatSOR_MPISBAIJ, 1772a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 177397304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1774a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1775a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1776a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1777a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 177897304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1779a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1780a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1781a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1782f4259b30SLisandro Dalcin /* 24*/ NULL, 1783f4259b30SLisandro Dalcin NULL, 1784f4259b30SLisandro Dalcin NULL, 1785f4259b30SLisandro Dalcin NULL, 1786f4259b30SLisandro Dalcin NULL, 17874994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1788f4259b30SLisandro Dalcin NULL, 1789f4259b30SLisandro Dalcin NULL, 1790a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1791f4259b30SLisandro Dalcin NULL, 1792d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1793f4259b30SLisandro Dalcin NULL, 1794f4259b30SLisandro Dalcin NULL, 1795f4259b30SLisandro Dalcin NULL, 1796f4259b30SLisandro Dalcin NULL, 1797d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 17987dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1799d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1800a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18013c896bc6SHong Zhang MatCopy_MPISBAIJ, 1802f4259b30SLisandro Dalcin /* 44*/ NULL, 1803a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18047d68702bSBarry Smith MatShift_MPISBAIJ, 1805f4259b30SLisandro Dalcin NULL, 1806f4259b30SLisandro Dalcin NULL, 1807f4259b30SLisandro Dalcin /* 49*/ NULL, 1808f4259b30SLisandro Dalcin NULL, 1809f4259b30SLisandro Dalcin NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin /* 54*/ NULL, 1813f4259b30SLisandro Dalcin NULL, 1814a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1815f4259b30SLisandro Dalcin NULL, 1816a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18177dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin NULL, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin /* 64*/ NULL, 1823f4259b30SLisandro Dalcin NULL, 1824f4259b30SLisandro Dalcin NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1828f4259b30SLisandro Dalcin NULL, 182928d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin /* 74*/ NULL, 1833f4259b30SLisandro Dalcin NULL, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin /* 79*/ NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 18415bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1842f4259b30SLisandro Dalcin /* 84*/ NULL, 1843f4259b30SLisandro Dalcin NULL, 1844f4259b30SLisandro Dalcin NULL, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin /* 89*/ NULL, 1848f4259b30SLisandro Dalcin NULL, 1849f4259b30SLisandro Dalcin NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin /* 94*/ NULL, 1853f4259b30SLisandro Dalcin NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin /* 99*/ NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin NULL, 18602726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin /*104*/ NULL, 186399cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1864d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1865d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 186695936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1867f4259b30SLisandro Dalcin /*109*/ NULL, 1868f4259b30SLisandro Dalcin NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 18713b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1872f4259b30SLisandro Dalcin /*114*/ NULL, 1873f4259b30SLisandro Dalcin NULL, 1874f4259b30SLisandro Dalcin NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin /*119*/ NULL, 1878f4259b30SLisandro Dalcin NULL, 1879f4259b30SLisandro Dalcin NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin /*124*/ NULL, 1883f4259b30SLisandro Dalcin NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin /*129*/ NULL, 1888f4259b30SLisandro Dalcin NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin /*134*/ NULL, 1893f4259b30SLisandro Dalcin NULL, 1894f4259b30SLisandro Dalcin NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 189746533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1898f4259b30SLisandro Dalcin NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902d70f29a3SPierre Jolivet /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1903d70f29a3SPierre Jolivet NULL, 1904d70f29a3SPierre Jolivet NULL, 1905d70f29a3SPierre Jolivet NULL 190699cafbc1SBarry Smith }; 1907a30f8f8cSSatish Balay 1908b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1909a23d5eceSKris Buschelman { 1910476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 1911535b19f3SBarry Smith PetscInt i,mbs,Mbs; 19125d2a9ed1SStefano Zampini PetscMPIInt size; 1913a23d5eceSKris Buschelman 1914a23d5eceSKris Buschelman PetscFunctionBegin; 19159566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B,PetscAbs(bs))); 19169566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19189566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 19195f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->N,B->cmap->N); 19205f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->n,B->cmap->n); 1921899cda47SBarry Smith 1922d0f46423SBarry Smith mbs = B->rmap->n/bs; 1923d0f46423SBarry Smith Mbs = B->rmap->N/bs; 19245f80ce2aSJacob Faibussowitsch PetscCheck(mbs*bs == B->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT,B->rmap->N,bs); 1925a23d5eceSKris Buschelman 1926d0f46423SBarry Smith B->rmap->bs = bs; 1927a23d5eceSKris Buschelman b->bs2 = bs*bs; 1928a23d5eceSKris Buschelman b->mbs = mbs; 1929a23d5eceSKris Buschelman b->Mbs = Mbs; 1930de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1931de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1932a23d5eceSKris Buschelman 1933a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1934d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1935a23d5eceSKris Buschelman } 1936d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1937d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1938a23d5eceSKris Buschelman 1939d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1940d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1941a23d5eceSKris Buschelman 1942cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 19439566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&b->colmap)); 1944cb7b82ddSBarry Smith #else 19459566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1946cb7b82ddSBarry Smith #endif 19479566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 19489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 19499566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 19509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 19519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 19529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 19539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 19549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 19559566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 1956cb7b82ddSBarry Smith 1957cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 19589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 19599566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 19609566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->B)); 19619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0)); 19629566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B,MATSEQBAIJ)); 19639566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B)); 1964cb7b82ddSBarry Smith 1965526dfc15SBarry Smith if (!B->preallocated) { 19669566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->A)); 19679566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n)); 19689566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A,MATSEQSBAIJ)); 19699566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A)); 19709566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash)); 1971526dfc15SBarry Smith } 1972a23d5eceSKris Buschelman 19739566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz)); 19749566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz)); 197526fbe8dcSKarl Rupp 1976526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1977cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 1978cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 1979a23d5eceSKris Buschelman PetscFunctionReturn(0); 1980a23d5eceSKris Buschelman } 1981a23d5eceSKris Buschelman 1982dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1983dfb205c3SBarry Smith { 198402106b30SBarry Smith PetscInt m,rstart,cend; 1985f4259b30SLisandro Dalcin PetscInt i,j,d,nz,bd, nz_max=0,*d_nnz=NULL,*o_nnz=NULL; 1986f4259b30SLisandro Dalcin const PetscInt *JJ =NULL; 1987f4259b30SLisandro Dalcin PetscScalar *values=NULL; 1988bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented; 19893bd0feecSPierre Jolivet PetscBool nooffprocentries; 1990dfb205c3SBarry Smith 1991dfb205c3SBarry Smith PetscFunctionBegin; 19925f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1,PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %" PetscInt_FMT,bs); 19939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap,bs)); 19949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap,bs)); 19959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19979566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 1998dfb205c3SBarry Smith m = B->rmap->n/bs; 1999dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2000dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2001dfb205c3SBarry Smith 20025f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]); 20039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&d_nnz,m,&o_nnz)); 2004dfb205c3SBarry Smith for (i=0; i<m; i++) { 2005dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 20065f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz); 20070cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2008dfb205c3SBarry Smith JJ = jj + ii[i]; 20090cd7f59aSBarry Smith bd = 0; 2010dfb205c3SBarry Smith for (j=0; j<nz; j++) { 20110cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2012dfb205c3SBarry Smith JJ++; 20130cd7f59aSBarry Smith bd++; 2014dfb205c3SBarry Smith } 2015dfb205c3SBarry Smith d = 0; 2016dfb205c3SBarry Smith for (; j<nz; j++) { 2017dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2018dfb205c3SBarry Smith d++; 2019dfb205c3SBarry Smith } 2020dfb205c3SBarry Smith d_nnz[i] = d; 20210cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20220cd7f59aSBarry Smith nz = nz - bd; 20230cd7f59aSBarry Smith nz_max = PetscMax(nz_max,nz); 2024dfb205c3SBarry Smith } 20259566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz)); 20269566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)); 20279566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz,o_nnz)); 2028dfb205c3SBarry Smith 2029dfb205c3SBarry Smith values = (PetscScalar*)V; 2030dfb205c3SBarry Smith if (!values) { 20319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs*bs*nz_max,&values)); 2032dfb205c3SBarry Smith } 2033dfb205c3SBarry Smith for (i=0; i<m; i++) { 2034dfb205c3SBarry Smith PetscInt row = i + rstart; 2035dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2036dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2037bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2038dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 20399566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES)); 2040bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2041bb80cfbbSStefano Zampini PetscInt j; 20420cd7f59aSBarry Smith for (j=0; j<ncols; j++) { 20430cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 20449566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES)); 20450cd7f59aSBarry Smith } 20460cd7f59aSBarry Smith } 2047dfb205c3SBarry Smith } 2048dfb205c3SBarry Smith 20499566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 20503bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20513bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 20529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 20539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 20543bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20553bd0feecSPierre Jolivet 20569566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 2057dfb205c3SBarry Smith PetscFunctionReturn(0); 2058dfb205c3SBarry Smith } 2059dfb205c3SBarry Smith 20600bad9183SKris Buschelman /*MC 2061fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2062828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2063828413b8SBarry Smith the matrix is stored. 2064828413b8SBarry Smith 2065828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2066828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20670bad9183SKris Buschelman 20680bad9183SKris Buschelman Options Database Keys: 20690bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 20700bad9183SKris Buschelman 2071476417e5SBarry Smith Notes: 2072476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2073476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2074476417e5SBarry Smith 20750bad9183SKris Buschelman Level: beginner 20760bad9183SKris Buschelman 2077db781477SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 20780bad9183SKris Buschelman M*/ 20790bad9183SKris Buschelman 20808cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2081b5df2d14SHong Zhang { 2082b5df2d14SHong Zhang Mat_MPISBAIJ *b; 208394ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2084b5df2d14SHong Zhang 2085b5df2d14SHong Zhang PetscFunctionBegin; 20869566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 2087b0a32e0cSBarry Smith B->data = (void*)b; 20889566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 2089b5df2d14SHong Zhang 2090b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2091b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2092b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2093b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 209426fbe8dcSKarl Rupp 20959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank)); 20969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size)); 2097b5df2d14SHong Zhang 2098b5df2d14SHong Zhang /* build local table of row and column ownerships */ 20999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size+2,&b->rangebs)); 2100b5df2d14SHong Zhang 2101b5df2d14SHong Zhang /* build cache for off array entries formed */ 21029566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash)); 210326fbe8dcSKarl Rupp 2104b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21050298fd71SBarry Smith b->colmap = NULL; 21060298fd71SBarry Smith b->garray = NULL; 2107b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2108b5df2d14SHong Zhang 2109b5df2d14SHong Zhang /* stuff used in block assembly */ 2110f4259b30SLisandro Dalcin b->barray = NULL; 2111b5df2d14SHong Zhang 2112b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2113f4259b30SLisandro Dalcin b->lvec = NULL; 2114f4259b30SLisandro Dalcin b->Mvctx = NULL; 2115f4259b30SLisandro Dalcin b->slvec0 = NULL; 2116f4259b30SLisandro Dalcin b->slvec0b = NULL; 2117f4259b30SLisandro Dalcin b->slvec1 = NULL; 2118f4259b30SLisandro Dalcin b->slvec1a = NULL; 2119f4259b30SLisandro Dalcin b->slvec1b = NULL; 2120f4259b30SLisandro Dalcin b->sMvctx = NULL; 2121b5df2d14SHong Zhang 2122b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2123f4259b30SLisandro Dalcin b->rowindices = NULL; 2124f4259b30SLisandro Dalcin b->rowvalues = NULL; 2125b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2126b5df2d14SHong Zhang 2127b5df2d14SHong Zhang /* hash table stuff */ 2128f4259b30SLisandro Dalcin b->ht = NULL; 2129f4259b30SLisandro Dalcin b->hd = NULL; 2130b5df2d14SHong Zhang b->ht_size = 0; 2131b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2132b5df2d14SHong Zhang b->ht_fact = 0; 2133b5df2d14SHong Zhang b->ht_total_ct = 0; 2134b5df2d14SHong Zhang b->ht_insert_ct = 0; 2135b5df2d14SHong Zhang 21367dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21377a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21387a868f3eSHong Zhang 2139f4259b30SLisandro Dalcin b->in_loc = NULL; 2140f4259b30SLisandro Dalcin b->v_loc = NULL; 214159ffdab8SBarry Smith b->n_loc = 0; 214294ae4db5SBarry Smith 21439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ)); 21449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ)); 21459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ)); 21469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 21476214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental)); 21496214f412SHong Zhang #endif 2150d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 21519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK)); 2152d24d4204SJose E. Roman #endif 21539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic)); 21549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic)); 2155aa5a9175SDahai Guo 215623ce1328SBarry Smith B->symmetric = PETSC_TRUE; 215723ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 215823ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 215923ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 21609899f194SHong Zhang B->symmetric_eternal = PETSC_TRUE; 2161eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 216213647f61SHong Zhang B->hermitian = PETSC_FALSE; 216313647f61SHong Zhang B->hermitian_set = PETSC_FALSE; 2164eb1ec7c1SStefano Zampini #else 2165eb1ec7c1SStefano Zampini B->hermitian = PETSC_TRUE; 2166eb1ec7c1SStefano Zampini B->hermitian_set = PETSC_TRUE; 2167eb1ec7c1SStefano Zampini #endif 216813647f61SHong Zhang 21699566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ)); 2170d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat"); 21719566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL)); 217294ae4db5SBarry Smith if (flg) { 217394ae4db5SBarry Smith PetscReal fact = 1.39; 21749566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE)); 21759566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL)); 217694ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 21779566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B,fact)); 21789566063dSJacob Faibussowitsch PetscCall(PetscInfo(B,"Hash table Factor used %5.2g\n",(double)fact)); 217994ae4db5SBarry Smith } 2180d0609cedSBarry Smith PetscOptionsEnd(); 2181b5df2d14SHong Zhang PetscFunctionReturn(0); 2182b5df2d14SHong Zhang } 2183b5df2d14SHong Zhang 2184209238afSKris Buschelman /*MC 2185002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2186209238afSKris Buschelman 2187209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2188209238afSKris Buschelman and MATMPISBAIJ otherwise. 2189209238afSKris Buschelman 2190209238afSKris Buschelman Options Database Keys: 2191209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2192209238afSKris Buschelman 2193209238afSKris Buschelman Level: beginner 2194209238afSKris Buschelman 2195db781477SPatrick Sanan .seealso: `MatCreateSBAIJ`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2196209238afSKris Buschelman M*/ 2197209238afSKris Buschelman 2198b5df2d14SHong Zhang /*@C 2199b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2200b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2201b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2202b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2203b5df2d14SHong Zhang 2204b5df2d14SHong Zhang Collective on Mat 2205b5df2d14SHong Zhang 2206b5df2d14SHong Zhang Input Parameters: 22071c4f3114SJed Brown + B - the matrix 2208bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2209bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2210b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2211b5df2d14SHong Zhang submatrix (same for all local rows) 2212b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22136d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22140298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 221595742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2216b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2217b5df2d14SHong Zhang submatrix (same for all local rows). 2218b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2219c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22200298fd71SBarry Smith (possibly different for each block row) or NULL. 2221b5df2d14SHong Zhang 2222b5df2d14SHong Zhang Options Database Keys: 2223a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2224b5df2d14SHong Zhang block calculations (much slower) 2225a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2226b5df2d14SHong Zhang 2227b5df2d14SHong Zhang Notes: 2228b5df2d14SHong Zhang 2229b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2230b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2231b5df2d14SHong Zhang 223249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 223349a6f317SBarry Smith 2234b5df2d14SHong Zhang Storage Information: 2235b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2236b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2237b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2238b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2239b5df2d14SHong Zhang 2240b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2241b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 22420298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2243b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2244b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2245b5df2d14SHong Zhang 2246aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2247aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2248aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2249aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2250aa95bbe8SBarry Smith 2251b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2252b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2253b5df2d14SHong Zhang 2254b5df2d14SHong Zhang .vb 2255b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2256a4b1a0f6SJed Brown -------------------------- 2257c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2258c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2259c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2260a4b1a0f6SJed Brown -------------------------- 2261b5df2d14SHong Zhang .ve 2262b5df2d14SHong Zhang 2263b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2264b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22656d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22666d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2267b5df2d14SHong Zhang 22686d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22696d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2270c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2271c2fc9fa9SBarry Smith 2272b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2273b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2274b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2275b5df2d14SHong Zhang matrices. 2276b5df2d14SHong Zhang 2277b5df2d14SHong Zhang Level: intermediate 2278b5df2d14SHong Zhang 2279db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2280b5df2d14SHong Zhang @*/ 22817087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2282b5df2d14SHong Zhang { 2283b5df2d14SHong Zhang PetscFunctionBegin; 22846ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22856ba663aaSJed Brown PetscValidType(B,1); 22866ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 2287cac4c232SBarry Smith PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz)); 2288b5df2d14SHong Zhang PetscFunctionReturn(0); 2289b5df2d14SHong Zhang } 2290b5df2d14SHong Zhang 2291a30f8f8cSSatish Balay /*@C 229269b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2293a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2294a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2295a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2296a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2297a30f8f8cSSatish Balay 2298d083f849SBarry Smith Collective 2299a30f8f8cSSatish Balay 2300a30f8f8cSSatish Balay Input Parameters: 2301a30f8f8cSSatish Balay + comm - MPI communicator 2302bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2303bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2304a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2305a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2306a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2307a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2308a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2309a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2310a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2311a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2312a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2313a30f8f8cSSatish Balay submatrix (same for all local rows) 2314a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23156d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23160298fd71SBarry Smith (possibly different for each block block row) or NULL. 231795742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 231895742e49SBarry Smith set its value even if it is zero. 2319a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2320a30f8f8cSSatish Balay submatrix (same for all local rows). 2321a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2322a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23230298fd71SBarry Smith each block row) or NULL. 2324a30f8f8cSSatish Balay 2325a30f8f8cSSatish Balay Output Parameter: 2326a30f8f8cSSatish Balay . A - the matrix 2327a30f8f8cSSatish Balay 2328a30f8f8cSSatish Balay Options Database Keys: 2329a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2330a30f8f8cSSatish Balay block calculations (much slower) 2331a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2332a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2333a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2334a30f8f8cSSatish Balay 2335175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2336f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2337175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2338175b88e8SBarry Smith 2339a30f8f8cSSatish Balay Notes: 2340d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23416d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2342d1be2dadSMatthew Knepley 2343a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2344a30f8f8cSSatish Balay (possibly both). 2345a30f8f8cSSatish Balay 2346a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2347a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2348a30f8f8cSSatish Balay 234949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 235049a6f317SBarry Smith 2351a30f8f8cSSatish Balay Storage Information: 2352a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2353a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2354a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2355a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2356a30f8f8cSSatish Balay 2357a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2358a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 23590298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2360a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2361a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2362a30f8f8cSSatish Balay 2363a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2364a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2365a30f8f8cSSatish Balay 2366a30f8f8cSSatish Balay .vb 2367a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2368a4b1a0f6SJed Brown -------------------------- 2369c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2370c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2371c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2372a4b1a0f6SJed Brown -------------------------- 2373a30f8f8cSSatish Balay .ve 2374a30f8f8cSSatish Balay 2375a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2376a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23776d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23786d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2379a30f8f8cSSatish Balay 23806d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23816d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2382a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2383a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2384a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2385a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2386a30f8f8cSSatish Balay matrices. 2387a30f8f8cSSatish Balay 2388a30f8f8cSSatish Balay Level: intermediate 2389a30f8f8cSSatish Balay 2390db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()` 2391a30f8f8cSSatish Balay @*/ 2392a30f8f8cSSatish Balay 239369b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2394a30f8f8cSSatish Balay { 23951302d50aSBarry Smith PetscMPIInt size; 2396a30f8f8cSSatish Balay 2397a30f8f8cSSatish Balay PetscFunctionBegin; 23989566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 23999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2401273d9f13SBarry Smith if (size > 1) { 24029566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATMPISBAIJ)); 24039566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz)); 2404273d9f13SBarry Smith } else { 24059566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQSBAIJ)); 24069566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz)); 2407273d9f13SBarry Smith } 2408a30f8f8cSSatish Balay PetscFunctionReturn(0); 2409a30f8f8cSSatish Balay } 2410a30f8f8cSSatish Balay 24116849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2412a30f8f8cSSatish Balay { 2413a30f8f8cSSatish Balay Mat mat; 2414a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2415d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2416387bc808SHong Zhang PetscScalar *array; 2417a30f8f8cSSatish Balay 2418a30f8f8cSSatish Balay PetscFunctionBegin; 2419f4259b30SLisandro Dalcin *newmat = NULL; 242026fbe8dcSKarl Rupp 24219566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat)); 24229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N)); 24239566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)matin)->type_name)); 24249566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap)); 24259566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap)); 2426e1b6402fSHong Zhang 2427d5f3da31SBarry Smith mat->factortype = matin->factortype; 2428273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 242982327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24307fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24317fff6886SHong Zhang 2432b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2433a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2434a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2435a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2436a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2437a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2438a30f8f8cSSatish Balay 2439a30f8f8cSSatish Balay a->size = oldmat->size; 2440a30f8f8cSSatish Balay a->rank = oldmat->rank; 2441a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2442a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2443f4259b30SLisandro Dalcin a->rowindices = NULL; 2444f4259b30SLisandro Dalcin a->rowvalues = NULL; 2445a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2446f4259b30SLisandro Dalcin a->barray = NULL; 2447899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2448899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2449899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2450899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2451a30f8f8cSSatish Balay 2452a30f8f8cSSatish Balay /* hash table stuff */ 2453f4259b30SLisandro Dalcin a->ht = NULL; 2454f4259b30SLisandro Dalcin a->hd = NULL; 2455a30f8f8cSSatish Balay a->ht_size = 0; 2456a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2457a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2458a30f8f8cSSatish Balay a->ht_total_ct = 0; 2459a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2460a30f8f8cSSatish Balay 24619566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2)); 2462a30f8f8cSSatish Balay if (oldmat->colmap) { 2463a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 24649566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap)); 2465a30f8f8cSSatish Balay #else 24669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs,&a->colmap)); 24679566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt))); 24689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs)); 2469a30f8f8cSSatish Balay #endif 2470f4259b30SLisandro Dalcin } else a->colmap = NULL; 2471387bc808SHong Zhang 2472a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 24739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len,&a->garray)); 24749566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt))); 24759566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray,oldmat->garray,len)); 2476f4259b30SLisandro Dalcin } else a->garray = NULL; 2477a30f8f8cSSatish Balay 24789566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash)); 24799566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec,&a->lvec)); 24809566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec)); 24819566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx)); 24829566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx)); 248382327fa8SHong Zhang 24849566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0,&a->slvec0)); 24859566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0)); 24869566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1,&a->slvec1)); 24879566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1)); 2488387bc808SHong Zhang 24899566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1,&nt)); 24909566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1,&array)); 24919566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a)); 24929566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b)); 24939566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1,&array)); 24949566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0,&array)); 24959566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b)); 24969566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0,&array)); 24979566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0)); 24989566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1)); 24999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b)); 25009566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a)); 25019566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b)); 2502387bc808SHong Zhang 2503387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25049566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2505387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 25069566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx)); 250782327fa8SHong Zhang 25089566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 25099566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 25109566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B)); 25119566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B)); 25129566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist)); 2513a30f8f8cSSatish Balay *newmat = mat; 2514a30f8f8cSSatish Balay PetscFunctionReturn(0); 2515a30f8f8cSSatish Balay } 2516a30f8f8cSSatish Balay 2517618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2518618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2519618cc2edSLisandro Dalcin 2520618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer) 252195936485SShri Abhyankar { 25227f489da9SVaclav Hapla PetscBool isbinary; 252395936485SShri Abhyankar 252495936485SShri Abhyankar PetscFunctionBegin; 25259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 25265f80ce2aSJacob Faibussowitsch PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 25279566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat,viewer)); 252895936485SShri Abhyankar PetscFunctionReturn(0); 252995936485SShri Abhyankar } 253095936485SShri Abhyankar 2531dcf5cc72SBarry Smith /*XXXXX@ 2532a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2533a30f8f8cSSatish Balay 2534a30f8f8cSSatish Balay Input Parameters: 2535a30f8f8cSSatish Balay . mat - the matrix 2536a30f8f8cSSatish Balay . fact - factor 2537a30f8f8cSSatish Balay 2538c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2539a30f8f8cSSatish Balay 2540a30f8f8cSSatish Balay Level: advanced 2541a30f8f8cSSatish Balay 2542a30f8f8cSSatish Balay Notes: 2543a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2544a30f8f8cSSatish Balay 2545db781477SPatrick Sanan .seealso: `MatSetOption()` 2546dcf5cc72SBarry Smith @XXXXX*/ 2547dcf5cc72SBarry Smith 2548985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 254924d5174aSHong Zhang { 255024d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2551f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2552ca54ac64SHong Zhang PetscReal atmp; 255387828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 25541302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25551302d50aSBarry Smith PetscMPIInt rank,size; 25561302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 255787828ca2SBarry Smith PetscScalar *va; 25588a1c53f2SBarry Smith MatScalar *ba; 2559f4c0e9e4SHong Zhang MPI_Status stat; 256024d5174aSHong Zhang 256124d5174aSHong Zhang PetscFunctionBegin; 25625f80ce2aSJacob Faibussowitsch PetscCheck(!idx,PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 25639566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A,v,NULL)); 25649566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&va)); 2565f4c0e9e4SHong Zhang 25669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 25679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank)); 2568f4c0e9e4SHong Zhang 2569d0f46423SBarry Smith bs = A->rmap->bs; 2570f4c0e9e4SHong Zhang mbs = a->mbs; 2571f4c0e9e4SHong Zhang Mbs = a->Mbs; 2572f4c0e9e4SHong Zhang ba = b->a; 2573f4c0e9e4SHong Zhang bi = b->i; 2574f4c0e9e4SHong Zhang bj = b->j; 2575f4c0e9e4SHong Zhang 2576f4c0e9e4SHong Zhang /* find ownerships */ 2577d0f46423SBarry Smith rowners_bs = A->rmap->range; 2578f4c0e9e4SHong Zhang 2579f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25809566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs*Mbs,&work)); 2581f4c0e9e4SHong Zhang 2582f4c0e9e4SHong Zhang /* row_max for B */ 2583b8475685SHong Zhang if (rank != size-1) { 2584f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2585f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2586f4c0e9e4SHong Zhang brow = bs*i; 2587f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2588f4c0e9e4SHong Zhang bcol = bs*(*bj); 2589f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2590ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 259104d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2592f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2593f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2594ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2595ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2596f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2597f4c0e9e4SHong Zhang } 2598f4c0e9e4SHong Zhang } 2599f4c0e9e4SHong Zhang bj++; 2600f4c0e9e4SHong Zhang } 2601f4c0e9e4SHong Zhang } 2602f4c0e9e4SHong Zhang 2603f4c0e9e4SHong Zhang /* send values to its owners */ 2604f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2605f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2606ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 26079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A))); 2608ca54ac64SHong Zhang } 2609f4c0e9e4SHong Zhang } 2610f4c0e9e4SHong Zhang 2611f4c0e9e4SHong Zhang /* receive values */ 2612ca54ac64SHong Zhang if (rank) { 2613f4c0e9e4SHong Zhang rvalues = work; 2614ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2615f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 26169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat)); 2617f4c0e9e4SHong Zhang /* process values */ 2618f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2619ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2620f4c0e9e4SHong Zhang } 2621f4c0e9e4SHong Zhang } 2622ca54ac64SHong Zhang } 2623f4c0e9e4SHong Zhang 26249566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&va)); 26259566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 262624d5174aSHong Zhang PetscFunctionReturn(0); 262724d5174aSHong Zhang } 26282798e883SHong Zhang 262941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 26302798e883SHong Zhang { 26312798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2632d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 26333649974fSBarry Smith PetscScalar *x,*ptr,*from; 2634ffe4fb16SHong Zhang Vec bb1; 26353649974fSBarry Smith const PetscScalar *b; 2636ffe4fb16SHong Zhang 2637ffe4fb16SHong Zhang PetscFunctionBegin; 26385f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive",its,lits); 26395f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1,PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2640ffe4fb16SHong Zhang 2641a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2643a2b30743SBarry Smith PetscFunctionReturn(0); 2644a2b30743SBarry Smith } 2645a2b30743SBarry Smith 2646ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2647ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26489566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx)); 2649ffe4fb16SHong Zhang its--; 2650ffe4fb16SHong Zhang } 2651ffe4fb16SHong Zhang 26529566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&bb1)); 2653ffe4fb16SHong Zhang while (its--) { 2654ffe4fb16SHong Zhang 2655ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26569566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b)); 2657ffe4fb16SHong Zhang 2658ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26599566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0,&ptr)); 26609566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx,&x)); 26619566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr,x,bs*mbs)); 26629566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0,&ptr)); 2663ffe4fb16SHong Zhang 26649566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0,-1.0)); 2665ffe4fb16SHong Zhang 2666ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26679566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1,&ptr)); 26689566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb,&b)); 26699566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr,b,bs*mbs)); 26709566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1,&ptr)); 2671ffe4fb16SHong Zhang 2672ffe4fb16SHong Zhang /* set slvec1b = 0 */ 26739566063dSJacob Faibussowitsch PetscCall(VecSet(mat->slvec1b,0.0)); 2674ffe4fb16SHong Zhang 26759566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD)); 26769566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx,&x)); 26779566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb,&b)); 26789566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD)); 2679ffe4fb16SHong Zhang 2680ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 26819566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1)); 2682ffe4fb16SHong Zhang 2683ffe4fb16SHong Zhang /* local diagonal sweep */ 26849566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx)); 2685ffe4fb16SHong Zhang } 26869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2687fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26889566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2689fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26909566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2691fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2692fa22f6d0SBarry Smith Vec xx1; 2693ace3abfcSBarry Smith PetscBool hasop; 269420f1ed55SBarry Smith const PetscScalar *diag; 2695887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 269620f1ed55SBarry Smith PetscInt i,n; 2697fa22f6d0SBarry Smith 2698fa22f6d0SBarry Smith if (!mat->xx1) { 26999566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&mat->xx1)); 27009566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&mat->bb1)); 2701fa22f6d0SBarry Smith } 2702fa22f6d0SBarry Smith xx1 = mat->xx1; 2703fa22f6d0SBarry Smith bb1 = mat->bb1; 2704fa22f6d0SBarry Smith 27059566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx)); 2706fa22f6d0SBarry Smith 2707fa22f6d0SBarry Smith if (!mat->diag) { 2708effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27099566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin,&mat->diag,NULL)); 27109566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin,mat->diag)); 2711fa22f6d0SBarry Smith } 27129566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop)); 2713fa22f6d0SBarry Smith 2714fa22f6d0SBarry Smith if (hasop) { 27159566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin,xx,bb1)); 27169566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 271720f1ed55SBarry Smith } else { 271820f1ed55SBarry Smith /* 271920f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 27209566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27219566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 272220f1ed55SBarry Smith */ 27239566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a,&sl)); 27249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag,&diag)); 27259566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb,&b)); 27269566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx,&x)); 27279566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx,&n)); 2728887ee2caSBarry Smith if (omega == 1.0) { 272926fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 27309566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*n)); 2731887ee2caSBarry Smith } else { 273226fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 27339566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0*n)); 2734887ee2caSBarry Smith } 27359566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a,&sl)); 27369566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag,&diag)); 27379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb,&b)); 27389566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx,&x)); 273920f1ed55SBarry Smith } 2740fa22f6d0SBarry Smith 2741fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 27429566063dSJacob Faibussowitsch PetscCall(VecSet(mat->slvec1b,0.0)); 27439566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b)); 27449566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0,&from)); 27459566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx,&x)); 27469566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from,x,bs*mbs)); 27479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0,&from)); 27489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx,&x)); 27499566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD)); 27509566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD)); 27519566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a)); 2752fa22f6d0SBarry Smith 2753fa22f6d0SBarry Smith /* local sweep */ 27549566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1)); 27559566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx,1.0,xx1)); 2756f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2757ffe4fb16SHong Zhang PetscFunctionReturn(0); 2758ffe4fb16SHong Zhang } 2759ffe4fb16SHong Zhang 2760dfb205c3SBarry Smith /*@ 2761dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2762dfb205c3SBarry Smith CSR format the local rows. 2763dfb205c3SBarry Smith 2764d083f849SBarry Smith Collective 2765dfb205c3SBarry Smith 2766dfb205c3SBarry Smith Input Parameters: 2767dfb205c3SBarry Smith + comm - MPI communicator 2768dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2769dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2770dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2771dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2772dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2773dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2774dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2775483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2776dfb205c3SBarry Smith . j - column indices 2777dfb205c3SBarry Smith - a - matrix values 2778dfb205c3SBarry Smith 2779dfb205c3SBarry Smith Output Parameter: 2780dfb205c3SBarry Smith . mat - the matrix 2781dfb205c3SBarry Smith 2782dfb205c3SBarry Smith Level: intermediate 2783dfb205c3SBarry Smith 2784dfb205c3SBarry Smith Notes: 2785dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2786dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2787dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2788dfb205c3SBarry Smith 2789dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2790dfb205c3SBarry Smith 2791db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2792db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 2793dfb205c3SBarry Smith @*/ 27947087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2795dfb205c3SBarry Smith { 2796dfb205c3SBarry Smith PetscFunctionBegin; 27975f80ce2aSJacob Faibussowitsch PetscCheck(!i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 27985f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 27999566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,mat)); 28009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat,m,n,M,N)); 28019566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat,MATMPISBAIJ)); 28029566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a)); 2803dfb205c3SBarry Smith PetscFunctionReturn(0); 2804dfb205c3SBarry Smith } 2805dfb205c3SBarry Smith 2806dfb205c3SBarry Smith /*@C 2807664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 2808dfb205c3SBarry Smith 2809d083f849SBarry Smith Collective 2810dfb205c3SBarry Smith 2811dfb205c3SBarry Smith Input Parameters: 28121c4f3114SJed Brown + B - the matrix 2813dfb205c3SBarry Smith . bs - the block size 2814dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2815dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2816dfb205c3SBarry Smith - v - optional values in the matrix 2817dfb205c3SBarry Smith 2818664954b6SBarry Smith Level: advanced 2819664954b6SBarry Smith 2820664954b6SBarry Smith Notes: 28210cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28220cd7f59aSBarry Smith and usually the numerical values as well 28230cd7f59aSBarry Smith 282450c5228eSBarry Smith Any entries below the diagonal are ignored 2825dfb205c3SBarry Smith 2826db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ` 2827dfb205c3SBarry Smith @*/ 28287087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2829dfb205c3SBarry Smith { 2830dfb205c3SBarry Smith PetscFunctionBegin; 2831cac4c232SBarry Smith PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v)); 2832dfb205c3SBarry Smith PetscFunctionReturn(0); 2833dfb205c3SBarry Smith } 2834dfb205c3SBarry Smith 283510c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 28364dcd73b1SHong Zhang { 283710c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 283810c56fdeSHong Zhang PetscInt *indx; 283910c56fdeSHong Zhang PetscScalar *values; 2840dfb205c3SBarry Smith 28414dcd73b1SHong Zhang PetscFunctionBegin; 28429566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 284310c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 284410c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 2845de25e9cbSPierre Jolivet PetscInt *dnz,*onz,mbs,Nbs,nbs; 284610c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 2847de25e9cbSPierre Jolivet PetscMPIInt rank,size; 28484dcd73b1SHong Zhang 28499566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat,&bs,&cbs)); 285010c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 285110c56fdeSHong Zhang if (n == PETSC_DECIDE) { 28529566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnershipBlock(comm,cbs,&n,&N)); 285310c56fdeSHong Zhang } 2854da91a574SPierre Jolivet nbs = n/cbs; 28554dcd73b1SHong Zhang 28569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax,&bindx)); 2857d0609cedSBarry Smith MatPreallocateBegin(comm,mbs,nbs,dnz,onz); /* inline function, output __end and __rstart are used below */ 2858de25e9cbSPierre Jolivet 28599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 28609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&size)); 2861de25e9cbSPierre Jolivet if (rank == size-1) { 2862de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28635f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT,__end,Nbs); 2864de25e9cbSPierre Jolivet } 2865de25e9cbSPierre Jolivet 2866d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28679566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE)); 286810c56fdeSHong Zhang for (i=0; i<mbs; i++) { 28699566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL)); /* non-blocked nnz and indx */ 28704dcd73b1SHong Zhang nnz = nnz/bs; 28714dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 28729566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz)); 28739566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL)); 28744dcd73b1SHong Zhang } 28759566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE)); 28769566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 28774dcd73b1SHong Zhang 28789566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,outmat)); 28799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE)); 28809566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat,bs,cbs)); 28819566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat,MATSBAIJ)); 28829566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz)); 28839566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz)); 2884d0609cedSBarry Smith MatPreallocateEnd(dnz,onz); 28854dcd73b1SHong Zhang } 28864dcd73b1SHong Zhang 288710c56fdeSHong Zhang /* numeric phase */ 28889566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat,&bs,&cbs)); 28899566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat,&rstart,NULL)); 28904dcd73b1SHong Zhang 28919566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE)); 28924dcd73b1SHong Zhang for (i=0; i<m; i++) { 28939566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values)); 28944dcd73b1SHong Zhang Ii = i + rstart; 28959566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES)); 28969566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values)); 28974dcd73b1SHong Zhang } 28989566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE)); 28999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY)); 29009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY)); 29014dcd73b1SHong Zhang PetscFunctionReturn(0); 29024dcd73b1SHong Zhang } 2903