1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 387087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 39a30f8f8cSSatish Balay { 40f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 41dfbe8321SBarry Smith PetscErrorCode ierr; 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay PetscFunctionBegin; 44a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 45a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 46a30f8f8cSSatish Balay PetscFunctionReturn(0); 47a30f8f8cSSatish Balay } 48a30f8f8cSSatish Balay 49a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 50a30f8f8cSSatish Balay { \ 51a30f8f8cSSatish Balay \ 52a30f8f8cSSatish Balay brow = row/bs; \ 53a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 54a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 55a30f8f8cSSatish Balay bcol = col/bs; \ 56a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 57a30f8f8cSSatish Balay low = 0; high = nrow; \ 58a30f8f8cSSatish Balay while (high-low > 3) { \ 59a30f8f8cSSatish Balay t = (low+high)/2; \ 60a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 61a30f8f8cSSatish Balay else low = t; \ 62a30f8f8cSSatish Balay } \ 63a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 64a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 65a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 66a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 67a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 68a30f8f8cSSatish Balay else *bap = value; \ 69a30f8f8cSSatish Balay goto a_noinsert; \ 70a30f8f8cSSatish Balay } \ 71a30f8f8cSSatish Balay } \ 72a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 73e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 74fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 75a30f8f8cSSatish Balay N = nrow++ - 1; \ 76a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 77a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 78a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 79a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 80a30f8f8cSSatish Balay } \ 81a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 82a30f8f8cSSatish Balay rp[_i] = bcol; \ 83a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 84e56f5c9eSBarry Smith A->nonzerostate++;\ 85a30f8f8cSSatish Balay a_noinsert:; \ 86a30f8f8cSSatish Balay ailen[brow] = nrow; \ 87a30f8f8cSSatish Balay } 88e5e170daSBarry Smith 89a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 90a30f8f8cSSatish Balay { \ 91a30f8f8cSSatish Balay brow = row/bs; \ 92a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 93a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 94a30f8f8cSSatish Balay bcol = col/bs; \ 95a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 96a30f8f8cSSatish Balay low = 0; high = nrow; \ 97a30f8f8cSSatish Balay while (high-low > 3) { \ 98a30f8f8cSSatish Balay t = (low+high)/2; \ 99a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 100a30f8f8cSSatish Balay else low = t; \ 101a30f8f8cSSatish Balay } \ 102a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 103a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 104a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 105a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 106a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 107a30f8f8cSSatish Balay else *bap = value; \ 108a30f8f8cSSatish Balay goto b_noinsert; \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay } \ 111a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 112e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 113fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 114a30f8f8cSSatish Balay N = nrow++ - 1; \ 115a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 116a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 117a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 118a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay } \ 120a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 121a30f8f8cSSatish Balay rp[_i] = bcol; \ 122a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 123e56f5c9eSBarry Smith B->nonzerostate++;\ 124a30f8f8cSSatish Balay b_noinsert:; \ 125a30f8f8cSSatish Balay bilen[brow] = nrow; \ 126a30f8f8cSSatish Balay } 127a30f8f8cSSatish Balay 128a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 129a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 130a30f8f8cSSatish Balay */ 1314a2ae208SSatish Balay #undef __FUNCT__ 132dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 133dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 134a30f8f8cSSatish Balay { 135a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 136a30f8f8cSSatish Balay MatScalar value; 137ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 138dfbe8321SBarry Smith PetscErrorCode ierr; 1391302d50aSBarry Smith PetscInt i,j,row,col; 140d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 141d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 142d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 143a30f8f8cSSatish Balay 144a30f8f8cSSatish Balay /* Some Variables required in the macro */ 145a30f8f8cSSatish Balay Mat A = baij->A; 146a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1471302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 148a30f8f8cSSatish Balay MatScalar *aa =a->a; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay Mat B = baij->B; 151a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1521302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 153a30f8f8cSSatish Balay MatScalar *ba =b->a; 154a30f8f8cSSatish Balay 1551302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1561302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 157a30f8f8cSSatish Balay MatScalar *ap,*bap; 158a30f8f8cSSatish Balay 159a30f8f8cSSatish Balay /* for stash */ 1600298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1610298fd71SBarry Smith MatScalar *v_loc = NULL; 162a30f8f8cSSatish Balay 163a30f8f8cSSatish Balay PetscFunctionBegin; 164a30f8f8cSSatish Balay if (!baij->donotstash) { 16559ffdab8SBarry Smith if (n > baij->n_loc) { 16659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 16759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 168785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 169785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 17026fbe8dcSKarl Rupp 17159ffdab8SBarry Smith baij->n_loc = n; 17259ffdab8SBarry Smith } 17359ffdab8SBarry Smith in_loc = baij->in_loc; 17459ffdab8SBarry Smith v_loc = baij->v_loc; 175a30f8f8cSSatish Balay } 176a30f8f8cSSatish Balay 177a30f8f8cSSatish Balay for (i=0; i<m; i++) { 178a30f8f8cSSatish Balay if (im[i] < 0) continue; 1792515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 180e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 181a30f8f8cSSatish Balay #endif 182a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 183a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 184a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18501b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 18601b2bd88SHong Zhang if (a->ignore_ltriangular) { 18701b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 18826fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 18901b2bd88SHong Zhang } 190a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 191a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 192a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 193a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 194db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 195db4deed7SKarl Rupp else value = v[i+j*m]; 196a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 197a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 198a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 200cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 201a30f8f8cSSatish Balay #endif 202a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 203a30f8f8cSSatish Balay if (mat->was_assembled) { 204a30f8f8cSSatish Balay if (!baij->colmap) { 205ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 206a30f8f8cSSatish Balay } 207a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 208a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 20971730473SSatish Balay col = col - 1; 210a30f8f8cSSatish Balay #else 21171730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 212a30f8f8cSSatish Balay #endif 213a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 214ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 215a30f8f8cSSatish Balay col = in[j]; 216a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 217a30f8f8cSSatish Balay B = baij->B; 218a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 219a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 220a30f8f8cSSatish Balay ba = b->a; 22171730473SSatish Balay } else col += in[j]%bs; 222a30f8f8cSSatish Balay } else col = in[j]; 223db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 224db4deed7SKarl Rupp else value = v[i+j*m]; 225a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 226a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 227a30f8f8cSSatish Balay } 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay } else { /* off processor entry */ 2304cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 231a30f8f8cSSatish Balay if (!baij->donotstash) { 2325080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 233a30f8f8cSSatish Balay n_loc = 0; 234a30f8f8cSSatish Balay for (j=0; j<n; j++) { 235f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 236a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 237a30f8f8cSSatish Balay if (roworiented) { 238a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 239a30f8f8cSSatish Balay } else { 240a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 241a30f8f8cSSatish Balay } 242a30f8f8cSSatish Balay n_loc++; 243a30f8f8cSSatish Balay } 244b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay } 248a30f8f8cSSatish Balay PetscFunctionReturn(0); 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay 2514a2ae208SSatish Balay #undef __FUNCT__ 252dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 253dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 254a30f8f8cSSatish Balay { 2550880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 256f15d580aSBarry Smith const MatScalar *value; 257f15d580aSBarry Smith MatScalar *barray =baij->barray; 258ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 259dfbe8321SBarry Smith PetscErrorCode ierr; 260899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 261899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 262d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2630880e062SHong Zhang 264a30f8f8cSSatish Balay PetscFunctionBegin; 2650880e062SHong Zhang if (!barray) { 266785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 2670880e062SHong Zhang baij->barray = barray; 2680880e062SHong Zhang } 2690880e062SHong Zhang 2700880e062SHong Zhang if (roworiented) { 2710880e062SHong Zhang stepval = (n-1)*bs; 2720880e062SHong Zhang } else { 2730880e062SHong Zhang stepval = (m-1)*bs; 2740880e062SHong Zhang } 2750880e062SHong Zhang for (i=0; i<m; i++) { 2760880e062SHong Zhang if (im[i] < 0) continue; 2772515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 278e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2790880e062SHong Zhang #endif 2800880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2810880e062SHong Zhang row = im[i] - rstart; 2820880e062SHong Zhang for (j=0; j<n; j++) { 283f3f98c53SJed Brown if (im[i] > in[j]) { 284f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 285e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 286f3f98c53SJed Brown } 2870880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2880880e062SHong Zhang if ((roworiented) && (n == 1)) { 289f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2900880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 291f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2920880e062SHong Zhang } else { /* Here a copy is required */ 2930880e062SHong Zhang if (roworiented) { 2940880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2950880e062SHong Zhang } else { 2960880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2970880e062SHong Zhang } 2980880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2990880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3000880e062SHong Zhang *barray++ = *value++; 3010880e062SHong Zhang } 3020880e062SHong Zhang } 3030880e062SHong Zhang barray -=bs2; 3040880e062SHong Zhang } 3050880e062SHong Zhang 3060880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 3070880e062SHong Zhang col = in[j] - cstart; 3080880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 30926fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 311cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3120880e062SHong Zhang #endif 3130880e062SHong Zhang else { 3140880e062SHong Zhang if (mat->was_assembled) { 3150880e062SHong Zhang if (!baij->colmap) { 316ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3170880e062SHong Zhang } 3180880e062SHong Zhang 3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3200880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3211302d50aSBarry Smith { PetscInt data; 3220880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 323e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3240880e062SHong Zhang } 3250880e062SHong Zhang #else 326e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang #endif 3280880e062SHong Zhang #endif 3290880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3300880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3310880e062SHong Zhang col = (col - 1)/bs; 3320880e062SHong Zhang #else 3330880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3340880e062SHong Zhang #endif 3350880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 336ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3370880e062SHong Zhang col = in[j]; 3380880e062SHong Zhang } 33926fbe8dcSKarl Rupp } else col = in[j]; 340e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3410880e062SHong Zhang } 3420880e062SHong Zhang } 3430880e062SHong Zhang } else { 3444cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3450880e062SHong Zhang if (!baij->donotstash) { 3460880e062SHong Zhang if (roworiented) { 3470880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3480880e062SHong Zhang } else { 3490880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3500880e062SHong Zhang } 3510880e062SHong Zhang } 3520880e062SHong Zhang } 3530880e062SHong Zhang } 3540880e062SHong Zhang PetscFunctionReturn(0); 355a30f8f8cSSatish Balay } 356a30f8f8cSSatish Balay 3574a2ae208SSatish Balay #undef __FUNCT__ 3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 360a30f8f8cSSatish Balay { 361f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3626849ba73SBarry Smith PetscErrorCode ierr; 363d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 364d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 365a30f8f8cSSatish Balay 366a30f8f8cSSatish Balay PetscFunctionBegin; 367a30f8f8cSSatish Balay for (i=0; i<m; i++) { 368e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 369e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 370a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 371a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 372a30f8f8cSSatish Balay for (j=0; j<n; j++) { 373e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 374e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 375a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 376a30f8f8cSSatish Balay col = idxn[j] - bscstart; 377c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 378a30f8f8cSSatish Balay } else { 379a30f8f8cSSatish Balay if (!baij->colmap) { 380ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } 382a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 383a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 384a30f8f8cSSatish Balay data--; 385a30f8f8cSSatish Balay #else 386a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 387a30f8f8cSSatish Balay #endif 388a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 389a30f8f8cSSatish Balay else { 390a30f8f8cSSatish Balay col = data + idxn[j]%bs; 391e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 392a30f8f8cSSatish Balay } 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay } 395f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay PetscFunctionReturn(0); 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay 4004a2ae208SSatish Balay #undef __FUNCT__ 4014a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 402dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 403a30f8f8cSSatish Balay { 404a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 405dfbe8321SBarry Smith PetscErrorCode ierr; 406a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 407a30f8f8cSSatish Balay 408a30f8f8cSSatish Balay PetscFunctionBegin; 409a30f8f8cSSatish Balay if (baij->size == 1) { 410a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 411a30f8f8cSSatish Balay } else { 412a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 413785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 414a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 415a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 416a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 418ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4198f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 420a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4210b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4220b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4230b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4240b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 425899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 426d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4270b8dc8d2SHong Zhang MatScalar *v; 4280b8dc8d2SHong Zhang 429dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 430d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4310b8dc8d2SHong Zhang /* Amat */ 4320b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4330b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4340b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4350b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4360b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4370b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4380b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4390b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4400b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4410b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4420b8dc8d2SHong Zhang /* non-diagonal block */ 4430b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4440b8dc8d2SHong Zhang } 4450b8dc8d2SHong Zhang } 4460b8dc8d2SHong Zhang } 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang /* Bmat */ 4490b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4500b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4510b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4520b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4530b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4540b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4550b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4560b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4570b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4580b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4590b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4600b8dc8d2SHong Zhang } 4610b8dc8d2SHong Zhang } 4620b8dc8d2SHong Zhang } 4630b8dc8d2SHong Zhang } 464ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4650b8dc8d2SHong Zhang *norm = 0.0; 466d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4670b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4680b8dc8d2SHong Zhang } 46974ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 470f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 471a30f8f8cSSatish Balay } 472a30f8f8cSSatish Balay PetscFunctionReturn(0); 473a30f8f8cSSatish Balay } 474a30f8f8cSSatish Balay 4754a2ae208SSatish Balay #undef __FUNCT__ 4764a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 477dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 478a30f8f8cSSatish Balay { 479a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 480dfbe8321SBarry Smith PetscErrorCode ierr; 4811302d50aSBarry Smith PetscInt nstash,reallocs; 482a30f8f8cSSatish Balay InsertMode addv; 483a30f8f8cSSatish Balay 484a30f8f8cSSatish Balay PetscFunctionBegin; 48526fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 486a30f8f8cSSatish Balay 487a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 488ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 489ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 490a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 491a30f8f8cSSatish Balay 492d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4931e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 494a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4951e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 496a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4971e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 498a30f8f8cSSatish Balay PetscFunctionReturn(0); 499a30f8f8cSSatish Balay } 500a30f8f8cSSatish Balay 5014a2ae208SSatish Balay #undef __FUNCT__ 5024a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 503dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 504a30f8f8cSSatish Balay { 505a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 506a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 5076849ba73SBarry Smith PetscErrorCode ierr; 50813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 509e44c0bd4SBarry Smith PetscInt *row,*col; 510ace3abfcSBarry Smith PetscBool other_disassembled; 51113f74950SBarry Smith PetscMPIInt n; 512ace3abfcSBarry Smith PetscBool r1,r2,r3; 513a30f8f8cSSatish Balay MatScalar *val; 514a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 515a30f8f8cSSatish Balay 51691c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 517a30f8f8cSSatish Balay PetscFunctionBegin; 5184cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 519a30f8f8cSSatish Balay while (1) { 520a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 521a30f8f8cSSatish Balay if (!flg) break; 522a30f8f8cSSatish Balay 523a30f8f8cSSatish Balay for (i=0; i<n;) { 524a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 52526fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 52626fbe8dcSKarl Rupp if (row[j] != rstart) break; 52726fbe8dcSKarl Rupp } 528a30f8f8cSSatish Balay if (j < n) ncols = j-i; 529a30f8f8cSSatish Balay else ncols = n-i; 530a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 531dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 532a30f8f8cSSatish Balay i = j; 533a30f8f8cSSatish Balay } 534a30f8f8cSSatish Balay } 535a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 536a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 537a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 538a30f8f8cSSatish Balay restore the original flags */ 539a30f8f8cSSatish Balay r1 = baij->roworiented; 540a30f8f8cSSatish Balay r2 = a->roworiented; 54191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 54226fbe8dcSKarl Rupp 543a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 544a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 54526fbe8dcSKarl Rupp 54691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 547a30f8f8cSSatish Balay while (1) { 548a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 549a30f8f8cSSatish Balay if (!flg) break; 550a30f8f8cSSatish Balay 551a30f8f8cSSatish Balay for (i=0; i<n;) { 552a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 55326fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 55426fbe8dcSKarl Rupp if (row[j] != rstart) break; 55526fbe8dcSKarl Rupp } 556a30f8f8cSSatish Balay if (j < n) ncols = j-i; 557a30f8f8cSSatish Balay else ncols = n-i; 558dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 559a30f8f8cSSatish Balay i = j; 560a30f8f8cSSatish Balay } 561a30f8f8cSSatish Balay } 562a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 56326fbe8dcSKarl Rupp 564a30f8f8cSSatish Balay baij->roworiented = r1; 565a30f8f8cSSatish Balay a->roworiented = r2; 56626fbe8dcSKarl Rupp 56791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay 570a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 571a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 574a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 575a30f8f8cSSatish Balay /* 576a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 577a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 578a30f8f8cSSatish Balay */ 579a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 580ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 581a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 582ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay } 585a30f8f8cSSatish Balay 586a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58740781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 590a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 591a30f8f8cSSatish Balay 59274ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 59326fbe8dcSKarl Rupp 594a30f8f8cSSatish Balay baij->rowvalues = 0; 5954f9cfa9eSBarry Smith 5964f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 5974f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 598e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 59909e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 600e56f5c9eSBarry Smith } 601a30f8f8cSSatish Balay PetscFunctionReturn(0); 602a30f8f8cSSatish Balay } 603a30f8f8cSSatish Balay 6047da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6069804daf3SBarry Smith #include <petscdraw.h> 6074a2ae208SSatish Balay #undef __FUNCT__ 6084a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6096849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 610a30f8f8cSSatish Balay { 611a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 612dfbe8321SBarry Smith PetscErrorCode ierr; 613d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6147da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 615ace3abfcSBarry Smith PetscBool iascii,isdraw; 616b0a32e0cSBarry Smith PetscViewer sviewer; 617f3ef73ceSBarry Smith PetscViewerFormat format; 618a30f8f8cSSatish Balay 619a30f8f8cSSatish Balay PetscFunctionBegin; 620251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 621251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 62232077d6dSBarry Smith if (iascii) { 623b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 624456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 625a30f8f8cSSatish Balay MatInfo info; 626ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 627a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6287b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6297b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 631e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 632a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 633e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 634b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6357b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 63607d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 637a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 638a30f8f8cSSatish Balay PetscFunctionReturn(0); 639fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 64077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 641a30f8f8cSSatish Balay PetscFunctionReturn(0); 642c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 643c1490034SHong Zhang PetscFunctionReturn(0); 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay 647a30f8f8cSSatish Balay if (isdraw) { 648b0a32e0cSBarry Smith PetscDraw draw; 649ace3abfcSBarry Smith PetscBool isnull; 650b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 651b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 652a30f8f8cSSatish Balay } 653a30f8f8cSSatish Balay 6547da1fb6eSBarry Smith { 655a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 656a30f8f8cSSatish Balay Mat A; 65765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 659d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 660a30f8f8cSSatish Balay MatScalar *a; 661a30f8f8cSSatish Balay 662f204ca49SKris Buschelman /* Should this be the same type as mat? */ 663ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 664a30f8f8cSSatish Balay if (!rank) { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } else { 667f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 668a30f8f8cSSatish Balay } 669f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6700298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6712b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6723bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay /* copy over the A part */ 67565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 676a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 677785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 678a30f8f8cSSatish Balay 679a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 680e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 68126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 682a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 683e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 684a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 685dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 68626fbe8dcSKarl Rupp col++; 68726fbe8dcSKarl Rupp a += bs; 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay } 691a30f8f8cSSatish Balay /* copy over the B part */ 69265d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69365d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 694a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 695e9f7bc9eSHong Zhang 696e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 69726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 698a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 699a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 700a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 701799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 70226fbe8dcSKarl Rupp col++; 70326fbe8dcSKarl Rupp a += bs; 704a30f8f8cSSatish Balay } 705a30f8f8cSSatish Balay } 706a30f8f8cSSatish Balay } 707a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 708a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 709a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 710a30f8f8cSSatish Balay /* 711a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 712b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 713a30f8f8cSSatish Balay */ 714b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71565d70643SHong Zhang if (!rank) { 7167da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 717a30f8f8cSSatish Balay } 718b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7196bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 720a30f8f8cSSatish Balay } 721a30f8f8cSSatish Balay PetscFunctionReturn(0); 722a30f8f8cSSatish Balay } 723a30f8f8cSSatish Balay 7244a2ae208SSatish Balay #undef __FUNCT__ 7254a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 726dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 727a30f8f8cSSatish Balay { 728dfbe8321SBarry Smith PetscErrorCode ierr; 729ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 730a30f8f8cSSatish Balay 731a30f8f8cSSatish Balay PetscFunctionBegin; 732251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 733251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 734251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 735251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73632077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 737a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay PetscFunctionReturn(0); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay 7424a2ae208SSatish Balay #undef __FUNCT__ 7434a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 744dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 745a30f8f8cSSatish Balay { 746a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 748a30f8f8cSSatish Balay 749a30f8f8cSSatish Balay PetscFunctionBegin; 750a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 751d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 752a30f8f8cSSatish Balay #endif 753a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7556bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7566bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 757a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7586bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 759a30f8f8cSSatish Balay #else 76005b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 761a30f8f8cSSatish Balay #endif 76205b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7636bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7646bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7656bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7666bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7676bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7686bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7706bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7715755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77205b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77305b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7746bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7756bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7766bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 777ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 77805b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 779a30f8f8cSSatish Balay #endif 78059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 782899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 783bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 784901853e0SKris Buschelman 785dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 786bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 787bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 788bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 789bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 790bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 791a30f8f8cSSatish Balay PetscFunctionReturn(0); 792a30f8f8cSSatish Balay } 793a30f8f8cSSatish Balay 7944a2ae208SSatish Balay #undef __FUNCT__ 795547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 796547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 797547795f9SHong Zhang { 798547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 799547795f9SHong Zhang PetscErrorCode ierr; 800547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 801547795f9SHong Zhang PetscScalar *x,*from; 802547795f9SHong Zhang 803547795f9SHong Zhang PetscFunctionBegin; 804547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 805e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 806547795f9SHong Zhang 807547795f9SHong Zhang /* diagonal part */ 808547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 809547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 810547795f9SHong Zhang 811547795f9SHong Zhang /* subdiagonal part */ 812547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 813547795f9SHong Zhang 814547795f9SHong Zhang /* copy x into the vec slvec0 */ 815547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 816547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 817547795f9SHong Zhang 818547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 819547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 820547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 821547795f9SHong Zhang 822547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 823547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 824547795f9SHong Zhang /* supperdiagonal part */ 825547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 826547795f9SHong Zhang PetscFunctionReturn(0); 827547795f9SHong Zhang } 828547795f9SHong Zhang 829547795f9SHong Zhang #undef __FUNCT__ 830a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 831dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 832a9d4b620SHong Zhang { 833a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 834dfbe8321SBarry Smith PetscErrorCode ierr; 835d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 836fa22f6d0SBarry Smith PetscScalar *x,*from; 837a9d4b620SHong Zhang 838a9d4b620SHong Zhang PetscFunctionBegin; 839a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 840e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 841a9d4b620SHong Zhang 842a9d4b620SHong Zhang /* diagonal part */ 843a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 844fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 845a9d4b620SHong Zhang 846a9d4b620SHong Zhang /* subdiagonal part */ 847a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 848fc165ae2SBarry Smith 849a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8501ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8511ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 852a9d4b620SHong Zhang 853fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 854fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8551ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 856fc165ae2SBarry Smith 857fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 858ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 859a9d4b620SHong Zhang /* supperdiagonal part */ 860a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 861a9d4b620SHong Zhang PetscFunctionReturn(0); 862a9d4b620SHong Zhang } 863a9d4b620SHong Zhang 864a9d4b620SHong Zhang #undef __FUNCT__ 86540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 866dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 867a30f8f8cSSatish Balay { 868a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 869dfbe8321SBarry Smith PetscErrorCode ierr; 8701302d50aSBarry Smith PetscInt nt; 871a30f8f8cSSatish Balay 872a30f8f8cSSatish Balay PetscFunctionBegin; 873a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 874e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 875e7e72b3dSBarry Smith 876a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 877e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 87865d70643SHong Zhang 879ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 880b941877fSHong Zhang /* do diagonal part */ 881b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 882b941877fSHong Zhang /* do supperdiagonal part */ 883ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 884b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 885b941877fSHong Zhang /* do subdiagonal part */ 886b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 887ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 888ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 889a30f8f8cSSatish Balay PetscFunctionReturn(0); 890a30f8f8cSSatish Balay } 891a30f8f8cSSatish Balay 8924a2ae208SSatish Balay #undef __FUNCT__ 8934a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 894dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 895a30f8f8cSSatish Balay { 896de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 897dfbe8321SBarry Smith PetscErrorCode ierr; 898d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 899a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 900a9d4b620SHong Zhang 901a9d4b620SHong Zhang PetscFunctionBegin; 902a9d4b620SHong Zhang /* 903ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 9040ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 905a9d4b620SHong Zhang */ 906a9d4b620SHong Zhang /* diagonal part */ 907a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9082dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 909a9d4b620SHong Zhang 910a9d4b620SHong Zhang /* subdiagonal part */ 911a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 912a9d4b620SHong Zhang 913a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9141ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9151ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 916a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9171ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 918a9d4b620SHong Zhang 919ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9201ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 921ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 922a9d4b620SHong Zhang 923a9d4b620SHong Zhang /* supperdiagonal part */ 924a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 925a9d4b620SHong Zhang PetscFunctionReturn(0); 926a9d4b620SHong Zhang } 927a9d4b620SHong Zhang 928a9d4b620SHong Zhang #undef __FUNCT__ 929a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 930dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 931a9d4b620SHong Zhang { 932a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 933dfbe8321SBarry Smith PetscErrorCode ierr; 934a30f8f8cSSatish Balay 935a30f8f8cSSatish Balay PetscFunctionBegin; 936ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 937b941877fSHong Zhang /* do diagonal part */ 938b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 939b941877fSHong Zhang /* do supperdiagonal part */ 940ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 941de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 942de8b6608SHong Zhang 943b941877fSHong Zhang /* do subdiagonal part */ 944a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 945ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 946ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 947a30f8f8cSSatish Balay PetscFunctionReturn(0); 948a30f8f8cSSatish Balay } 949a30f8f8cSSatish Balay 950a30f8f8cSSatish Balay /* 951a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 952a30f8f8cSSatish Balay diagonal block 953a30f8f8cSSatish Balay */ 9544a2ae208SSatish Balay #undef __FUNCT__ 9554a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 956dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 957a30f8f8cSSatish Balay { 958a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 959dfbe8321SBarry Smith PetscErrorCode ierr; 960a30f8f8cSSatish Balay 961a30f8f8cSSatish Balay PetscFunctionBegin; 962e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 963a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 964a30f8f8cSSatish Balay PetscFunctionReturn(0); 965a30f8f8cSSatish Balay } 966a30f8f8cSSatish Balay 9674a2ae208SSatish Balay #undef __FUNCT__ 9684a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 969f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 970a30f8f8cSSatish Balay { 971a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 972dfbe8321SBarry Smith PetscErrorCode ierr; 973a30f8f8cSSatish Balay 974a30f8f8cSSatish Balay PetscFunctionBegin; 975f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 976f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 977a30f8f8cSSatish Balay PetscFunctionReturn(0); 978a30f8f8cSSatish Balay } 979a30f8f8cSSatish Balay 9804a2ae208SSatish Balay #undef __FUNCT__ 9814a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9821302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 983a30f8f8cSSatish Balay { 984d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 985d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 986d0d4cfc2SHong Zhang PetscErrorCode ierr; 987d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 988d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 989899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 990d0d4cfc2SHong Zhang 991a30f8f8cSSatish Balay PetscFunctionBegin; 992e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 993d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 994d0d4cfc2SHong Zhang 995d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 996d0d4cfc2SHong Zhang /* 997d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 998d0d4cfc2SHong Zhang */ 999d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1000d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1001d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1002d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1003d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 100426fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1005d0d4cfc2SHong Zhang } 1006dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1007d0d4cfc2SHong Zhang } 1008d0d4cfc2SHong Zhang 1009e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1010d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1011d0d4cfc2SHong Zhang 1012d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1013d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1014d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1015d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1016d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1017d0d4cfc2SHong Zhang nztot = nzA + nzB; 1018d0d4cfc2SHong Zhang 1019d0d4cfc2SHong Zhang cmap = mat->garray; 1020d0d4cfc2SHong Zhang if (v || idx) { 1021d0d4cfc2SHong Zhang if (nztot) { 1022d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1023d0d4cfc2SHong Zhang PetscInt imark = -1; 1024d0d4cfc2SHong Zhang if (v) { 1025d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1026d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1027d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1028d0d4cfc2SHong Zhang else break; 1029d0d4cfc2SHong Zhang } 1030d0d4cfc2SHong Zhang imark = i; 1031d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1032d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1033d0d4cfc2SHong Zhang } 1034d0d4cfc2SHong Zhang if (idx) { 1035d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1036d0d4cfc2SHong Zhang if (imark > -1) { 1037d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1038d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1039d0d4cfc2SHong Zhang } 1040d0d4cfc2SHong Zhang } else { 1041d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 104226fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1043d0d4cfc2SHong Zhang else break; 1044d0d4cfc2SHong Zhang } 1045d0d4cfc2SHong Zhang imark = i; 1046d0d4cfc2SHong Zhang } 1047d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1048d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1049d0d4cfc2SHong Zhang } 1050d0d4cfc2SHong Zhang } else { 1051d0d4cfc2SHong Zhang if (idx) *idx = 0; 1052d0d4cfc2SHong Zhang if (v) *v = 0; 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang } 1055d0d4cfc2SHong Zhang *nz = nztot; 1056d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1057d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1058a30f8f8cSSatish Balay PetscFunctionReturn(0); 1059a30f8f8cSSatish Balay } 1060a30f8f8cSSatish Balay 10614a2ae208SSatish Balay #undef __FUNCT__ 10624a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10631302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1064a30f8f8cSSatish Balay { 1065a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1066a30f8f8cSSatish Balay 1067a30f8f8cSSatish Balay PetscFunctionBegin; 1068e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1069a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1070a30f8f8cSSatish Balay PetscFunctionReturn(0); 1071a30f8f8cSSatish Balay } 1072a30f8f8cSSatish Balay 10734a2ae208SSatish Balay #undef __FUNCT__ 1074d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1075d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1076d0d4cfc2SHong Zhang { 1077d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1078d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1079d0d4cfc2SHong Zhang 1080d0d4cfc2SHong Zhang PetscFunctionBegin; 1081d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1082d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1083d0d4cfc2SHong Zhang } 1084d0d4cfc2SHong Zhang #undef __FUNCT__ 1085d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1086d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1087d0d4cfc2SHong Zhang { 1088d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1089d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1090d0d4cfc2SHong Zhang 1091d0d4cfc2SHong Zhang PetscFunctionBegin; 1092d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1093d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1094d0d4cfc2SHong Zhang } 1095d0d4cfc2SHong Zhang 1096d0d4cfc2SHong Zhang #undef __FUNCT__ 109799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 109899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 109999cafbc1SBarry Smith { 110099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110199cafbc1SBarry Smith PetscErrorCode ierr; 110299cafbc1SBarry Smith 110399cafbc1SBarry Smith PetscFunctionBegin; 110499cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 110599cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 110699cafbc1SBarry Smith PetscFunctionReturn(0); 110799cafbc1SBarry Smith } 110899cafbc1SBarry Smith 110999cafbc1SBarry Smith #undef __FUNCT__ 111099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111299cafbc1SBarry Smith { 111399cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111499cafbc1SBarry Smith PetscErrorCode ierr; 111599cafbc1SBarry Smith 111699cafbc1SBarry Smith PetscFunctionBegin; 111799cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 111899cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 111999cafbc1SBarry Smith PetscFunctionReturn(0); 112099cafbc1SBarry Smith } 112199cafbc1SBarry Smith 112299cafbc1SBarry Smith #undef __FUNCT__ 11234a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1124dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1125a30f8f8cSSatish Balay { 1126a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1127dfbe8321SBarry Smith PetscErrorCode ierr; 1128a30f8f8cSSatish Balay 1129a30f8f8cSSatish Balay PetscFunctionBegin; 1130a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1131a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1132a30f8f8cSSatish Balay PetscFunctionReturn(0); 1133a30f8f8cSSatish Balay } 1134a30f8f8cSSatish Balay 11354a2ae208SSatish Balay #undef __FUNCT__ 11364a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1137dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1138a30f8f8cSSatish Balay { 1139a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1140a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1141dfbe8321SBarry Smith PetscErrorCode ierr; 1142a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1143a30f8f8cSSatish Balay 1144a30f8f8cSSatish Balay PetscFunctionBegin; 1145d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 114626fbe8dcSKarl Rupp 1147a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 114826fbe8dcSKarl Rupp 1149a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1150a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 115126fbe8dcSKarl Rupp 1152a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 115326fbe8dcSKarl Rupp 1154a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1155a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1156a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1157a30f8f8cSSatish Balay info->nz_used = isend[0]; 1158a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1159a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1160a30f8f8cSSatish Balay info->memory = isend[3]; 1161a30f8f8cSSatish Balay info->mallocs = isend[4]; 1162a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1163ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 116426fbe8dcSKarl Rupp 1165a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1166a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1167a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1168a30f8f8cSSatish Balay info->memory = irecv[3]; 1169a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1170a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1171ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 117226fbe8dcSKarl Rupp 1173a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1174a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1175a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1176a30f8f8cSSatish Balay info->memory = irecv[3]; 1177a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1178f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1179a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1180a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1181a30f8f8cSSatish Balay info->factor_mallocs = 0; 1182a30f8f8cSSatish Balay PetscFunctionReturn(0); 1183a30f8f8cSSatish Balay } 1184a30f8f8cSSatish Balay 11854a2ae208SSatish Balay #undef __FUNCT__ 11864a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1187ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1188a30f8f8cSSatish Balay { 1189a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1190d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1191dfbe8321SBarry Smith PetscErrorCode ierr; 1192a30f8f8cSSatish Balay 1193a30f8f8cSSatish Balay PetscFunctionBegin; 1194e98b92d7SKris Buschelman switch (op) { 1195512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1196e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 119728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1198a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1199e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12004e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12014e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1202e98b92d7SKris Buschelman break; 1203e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12044e0d8c25SBarry Smith a->roworiented = flg; 120526fbe8dcSKarl Rupp 12064e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12074e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1208e98b92d7SKris Buschelman break; 12094e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1210290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1211e98b92d7SKris Buschelman break; 1212e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12134e0d8c25SBarry Smith a->donotstash = flg; 1214e98b92d7SKris Buschelman break; 1215e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12164e0d8c25SBarry Smith a->ht_flag = flg; 1217e98b92d7SKris Buschelman break; 12189a4540c5SBarry Smith case MAT_HERMITIAN: 1219e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1220eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 122126fbe8dcSKarl Rupp 1222547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1223eeffb40dSHong Zhang break; 1224ffa07934SHong Zhang case MAT_SPD: 1225ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1226ffa07934SHong Zhang A->spd = flg; 1227ffa07934SHong Zhang if (flg) { 1228ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1229ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1230ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1231ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1232ffa07934SHong Zhang } 1233ffa07934SHong Zhang break; 123477e54ba9SKris Buschelman case MAT_SYMMETRIC: 1235eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1236eeffb40dSHong Zhang break; 123777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1238eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1239eeffb40dSHong Zhang break; 12409a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1241e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1242290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124377e54ba9SKris Buschelman break; 1244d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12454e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1246d0d4cfc2SHong Zhang break; 1247d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12484e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1249d0d4cfc2SHong Zhang break; 1250d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12514e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1252d0d4cfc2SHong Zhang break; 1253e98b92d7SKris Buschelman default: 1254e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1255a30f8f8cSSatish Balay } 1256a30f8f8cSSatish Balay PetscFunctionReturn(0); 1257a30f8f8cSSatish Balay } 1258a30f8f8cSSatish Balay 12594a2ae208SSatish Balay #undef __FUNCT__ 12608115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1261fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1262a30f8f8cSSatish Balay { 1263dfbe8321SBarry Smith PetscErrorCode ierr; 12646e111a19SKarl Rupp 1265a30f8f8cSSatish Balay PetscFunctionBegin; 1266815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1267999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1268fc4dec0aSBarry Smith } 12698115998fSBarry Smith PetscFunctionReturn(0); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay 12724a2ae208SSatish Balay #undef __FUNCT__ 12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1275a30f8f8cSSatish Balay { 1276a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1277a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1278dfbe8321SBarry Smith PetscErrorCode ierr; 12795e90f9d9SHong Zhang PetscInt nv,m,n; 1280ace3abfcSBarry Smith PetscBool flg; 1281a30f8f8cSSatish Balay 1282a30f8f8cSSatish Balay PetscFunctionBegin; 1283a30f8f8cSSatish Balay if (ll != rr) { 1284b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1285e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1286a30f8f8cSSatish Balay } 1287b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1288b3bf805bSHong Zhang 12895e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1290e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1291b3bf805bSHong Zhang 12925e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1293e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12945e90f9d9SHong Zhang 1295ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12965e90f9d9SHong Zhang 12975e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 12980298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 12995e90f9d9SHong Zhang 13005e90f9d9SHong Zhang /* scale the diagonal part */ 1301a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1302a30f8f8cSSatish Balay 13035e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1304ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13050298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay PetscFunctionReturn(0); 1307a30f8f8cSSatish Balay } 1308a30f8f8cSSatish Balay 13094a2ae208SSatish Balay #undef __FUNCT__ 13104a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1311dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1312a30f8f8cSSatish Balay { 1313f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1314dfbe8321SBarry Smith PetscErrorCode ierr; 1315a30f8f8cSSatish Balay 1316a30f8f8cSSatish Balay PetscFunctionBegin; 1317a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1318a30f8f8cSSatish Balay PetscFunctionReturn(0); 1319a30f8f8cSSatish Balay } 1320a30f8f8cSSatish Balay 13216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1322a30f8f8cSSatish Balay 13234a2ae208SSatish Balay #undef __FUNCT__ 13244a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1325ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1326a30f8f8cSSatish Balay { 1327a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1328a30f8f8cSSatish Balay Mat a,b,c,d; 1329ace3abfcSBarry Smith PetscBool flg; 1330dfbe8321SBarry Smith PetscErrorCode ierr; 1331a30f8f8cSSatish Balay 1332a30f8f8cSSatish Balay PetscFunctionBegin; 1333a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1334a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1335a30f8f8cSSatish Balay 1336a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1337abc0a331SBarry Smith if (flg) { 1338a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1339a30f8f8cSSatish Balay } 1340ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1341a30f8f8cSSatish Balay PetscFunctionReturn(0); 1342a30f8f8cSSatish Balay } 1343a30f8f8cSSatish Balay 13444a2ae208SSatish Balay #undef __FUNCT__ 13453c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13463c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13473c896bc6SHong Zhang { 13483c896bc6SHong Zhang PetscErrorCode ierr; 13493c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 13503c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 13513c896bc6SHong Zhang 13523c896bc6SHong Zhang PetscFunctionBegin; 13533c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13543c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1355d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13563c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1357d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13583c896bc6SHong Zhang } else { 13593c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13603c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13613c896bc6SHong Zhang } 13623c896bc6SHong Zhang PetscFunctionReturn(0); 13633c896bc6SHong Zhang } 13643c896bc6SHong Zhang 13653c896bc6SHong Zhang #undef __FUNCT__ 13664994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 13674994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1368273d9f13SBarry Smith { 1369dfbe8321SBarry Smith PetscErrorCode ierr; 1370273d9f13SBarry Smith 1371273d9f13SBarry Smith PetscFunctionBegin; 1372535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1373273d9f13SBarry Smith PetscFunctionReturn(0); 1374273d9f13SBarry Smith } 1375a5e6ed63SBarry Smith 13764fe895cdSHong Zhang #undef __FUNCT__ 13774fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13784fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13794fe895cdSHong Zhang { 13804fe895cdSHong Zhang PetscErrorCode ierr; 13814fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 13824fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13834fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13844fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13854fe895cdSHong Zhang 13864fe895cdSHong Zhang PetscFunctionBegin; 13874fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13884fe895cdSHong Zhang PetscScalar alpha = a; 13894fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 13904fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1391c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 13928b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 13934fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 13944fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1395c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 13968b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1397a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 13984fe895cdSHong Zhang } else { 1399d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14004fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1401d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14024fe895cdSHong Zhang } 14034fe895cdSHong Zhang PetscFunctionReturn(0); 14044fe895cdSHong Zhang } 14054fe895cdSHong Zhang 1406a5e6ed63SBarry Smith #undef __FUNCT__ 1407a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14081302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1409a5e6ed63SBarry Smith { 14106849ba73SBarry Smith PetscErrorCode ierr; 14111302d50aSBarry Smith PetscInt i; 1412ace3abfcSBarry Smith PetscBool flg; 1413a5e6ed63SBarry Smith 14146849ba73SBarry Smith PetscFunctionBegin; 1415a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1416a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1417e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1418a5e6ed63SBarry Smith } 1419a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1420a5e6ed63SBarry Smith PetscFunctionReturn(0); 1421a5e6ed63SBarry Smith } 1422a5e6ed63SBarry Smith 1423a5e6ed63SBarry Smith 1424a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 14253964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1426a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1427a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1428a9d4b620SHong Zhang MatMult_MPISBAIJ, 142997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1430431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1431431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1432a30f8f8cSSatish Balay 0, 1433a30f8f8cSSatish Balay 0, 1434a30f8f8cSSatish Balay 0, 143597304618SKris Buschelman /* 10*/ 0, 1436a30f8f8cSSatish Balay 0, 1437a30f8f8cSSatish Balay 0, 143841f059aeSBarry Smith MatSOR_MPISBAIJ, 1439a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 144097304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1441a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1442a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1443a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1444a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 144597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1446a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1447a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1448a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1449d519adbfSMatthew Knepley /* 24*/ 0, 1450a30f8f8cSSatish Balay 0, 1451a30f8f8cSSatish Balay 0, 1452a30f8f8cSSatish Balay 0, 1453a30f8f8cSSatish Balay 0, 14544994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1455b5df2d14SHong Zhang 0, 1456a30f8f8cSSatish Balay 0, 1457a30f8f8cSSatish Balay 0, 1458a30f8f8cSSatish Balay 0, 1459d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 1464d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1465a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1466d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1467a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14683c896bc6SHong Zhang MatCopy_MPISBAIJ, 1469d519adbfSMatthew Knepley /* 44*/ 0, 1470a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1471a30f8f8cSSatish Balay 0, 1472a30f8f8cSSatish Balay 0, 1473a30f8f8cSSatish Balay 0, 1474f73d5cc4SBarry Smith /* 49*/ 0, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479d519adbfSMatthew Knepley /* 54*/ 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1484d519adbfSMatthew Knepley /* 59*/ 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487357abbc8SBarry Smith 0, 148824d5174aSHong Zhang 0, 1489d519adbfSMatthew Knepley /* 64*/ 0, 149024d5174aSHong Zhang 0, 149124d5174aSHong Zhang 0, 149224d5174aSHong Zhang 0, 149324d5174aSHong Zhang 0, 1494d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 149524d5174aSHong Zhang 0, 149697304618SKris Buschelman 0, 149797304618SKris Buschelman 0, 149897304618SKris Buschelman 0, 1499d519adbfSMatthew Knepley /* 74*/ 0, 150097304618SKris Buschelman 0, 150197304618SKris Buschelman 0, 150297304618SKris Buschelman 0, 150397304618SKris Buschelman 0, 1504d519adbfSMatthew Knepley /* 79*/ 0, 150597304618SKris Buschelman 0, 150697304618SKris Buschelman 0, 150797304618SKris Buschelman 0, 15085bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1509d519adbfSMatthew Knepley /* 84*/ 0, 1510865e5f61SKris Buschelman 0, 1511865e5f61SKris Buschelman 0, 1512865e5f61SKris Buschelman 0, 1513865e5f61SKris Buschelman 0, 1514d519adbfSMatthew Knepley /* 89*/ 0, 1515865e5f61SKris Buschelman 0, 1516865e5f61SKris Buschelman 0, 1517865e5f61SKris Buschelman 0, 1518865e5f61SKris Buschelman 0, 1519d519adbfSMatthew Knepley /* 94*/ 0, 1520865e5f61SKris Buschelman 0, 1521865e5f61SKris Buschelman 0, 152299cafbc1SBarry Smith 0, 152399cafbc1SBarry Smith 0, 1524d519adbfSMatthew Knepley /* 99*/ 0, 152599cafbc1SBarry Smith 0, 152699cafbc1SBarry Smith 0, 152799cafbc1SBarry Smith 0, 152899cafbc1SBarry Smith 0, 1529d519adbfSMatthew Knepley /*104*/ 0, 153099cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1531d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1532d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 153395936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 153495936485SShri Abhyankar /*109*/ 0, 153595936485SShri Abhyankar 0, 153695936485SShri Abhyankar 0, 153795936485SShri Abhyankar 0, 153895936485SShri Abhyankar 0, 153995936485SShri Abhyankar /*114*/ 0, 154095936485SShri Abhyankar 0, 154195936485SShri Abhyankar 0, 154295936485SShri Abhyankar 0, 154395936485SShri Abhyankar 0, 154495936485SShri Abhyankar /*119*/ 0, 154595936485SShri Abhyankar 0, 154695936485SShri Abhyankar 0, 15473964eb88SJed Brown 0, 15483964eb88SJed Brown 0, 15493964eb88SJed Brown /*124*/ 0, 15503964eb88SJed Brown 0, 15513964eb88SJed Brown 0, 15523964eb88SJed Brown 0, 15533964eb88SJed Brown 0, 15543964eb88SJed Brown /*129*/ 0, 15553964eb88SJed Brown 0, 15563964eb88SJed Brown 0, 15573964eb88SJed Brown 0, 15583964eb88SJed Brown 0, 15593964eb88SJed Brown /*134*/ 0, 15603964eb88SJed Brown 0, 15613964eb88SJed Brown 0, 15623964eb88SJed Brown 0, 15633964eb88SJed Brown 0, 15643964eb88SJed Brown /*139*/ 0, 1565f9426fe0SMark Adams 0, 15665bba2384SShri Abhyankar 0 156799cafbc1SBarry Smith }; 1568a30f8f8cSSatish Balay 1569a30f8f8cSSatish Balay 15704a2ae208SSatish Balay #undef __FUNCT__ 15714a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 157211bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1573a30f8f8cSSatish Balay { 1574a30f8f8cSSatish Balay PetscFunctionBegin; 1575a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1576a30f8f8cSSatish Balay PetscFunctionReturn(0); 1577a30f8f8cSSatish Balay } 1578a30f8f8cSSatish Balay 15794a2ae208SSatish Balay #undef __FUNCT__ 1580a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1581b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1582a23d5eceSKris Buschelman { 1583a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1584dfbe8321SBarry Smith PetscErrorCode ierr; 1585535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1586a23d5eceSKris Buschelman 1587a23d5eceSKris Buschelman PetscFunctionBegin; 158833d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 158926283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 159026283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1591e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1592899cda47SBarry Smith 1593a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1594d0f46423SBarry Smith mbs = B->rmap->n/bs; 1595d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1596c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1597a23d5eceSKris Buschelman 1598d0f46423SBarry Smith B->rmap->bs = bs; 1599a23d5eceSKris Buschelman b->bs2 = bs*bs; 1600a23d5eceSKris Buschelman b->mbs = mbs; 1601a23d5eceSKris Buschelman b->nbs = mbs; 1602a23d5eceSKris Buschelman b->Mbs = Mbs; 1603a23d5eceSKris Buschelman b->Nbs = Mbs; 1604a23d5eceSKris Buschelman 1605a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1606d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1607a23d5eceSKris Buschelman } 1608d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1609d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1610a23d5eceSKris Buschelman 1611d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1612d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1613a23d5eceSKris Buschelman 1614526dfc15SBarry Smith if (!B->preallocated) { 1615f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1616d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16179c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 16183bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1619f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1620d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16214aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 16223bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1623ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1624526dfc15SBarry Smith } 1625a23d5eceSKris Buschelman 1626526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1627526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 162826fbe8dcSKarl Rupp 1629526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1630a23d5eceSKris Buschelman PetscFunctionReturn(0); 1631a23d5eceSKris Buschelman } 1632a23d5eceSKris Buschelman 1633dfb205c3SBarry Smith #undef __FUNCT__ 1634dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1635dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1636dfb205c3SBarry Smith { 1637dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1638dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1639dfb205c3SBarry Smith const PetscInt *JJ =0; 1640dfb205c3SBarry Smith PetscScalar *values=0; 1641dfb205c3SBarry Smith PetscErrorCode ierr; 1642dfb205c3SBarry Smith 1643dfb205c3SBarry Smith PetscFunctionBegin; 1644ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1645dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1646dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1647dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1648dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1649e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1650dfb205c3SBarry Smith m = B->rmap->n/bs; 1651dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1652dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1653dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1654dfb205c3SBarry Smith 1655dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1656dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1657dfb205c3SBarry Smith for (i=0; i<m; i++) { 1658dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1659dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1660dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1661dfb205c3SBarry Smith JJ = jj + ii[i]; 1662dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1663dfb205c3SBarry Smith if (*JJ >= cstart) break; 1664dfb205c3SBarry Smith JJ++; 1665dfb205c3SBarry Smith } 1666dfb205c3SBarry Smith d = 0; 1667dfb205c3SBarry Smith for (; j<nz; j++) { 1668dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1669dfb205c3SBarry Smith d++; 1670dfb205c3SBarry Smith } 1671dfb205c3SBarry Smith d_nnz[i] = d; 1672dfb205c3SBarry Smith o_nnz[i] = nz - d; 1673dfb205c3SBarry Smith } 1674dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1675dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1676dfb205c3SBarry Smith 1677dfb205c3SBarry Smith values = (PetscScalar*)V; 1678dfb205c3SBarry Smith if (!values) { 1679785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1680dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1681dfb205c3SBarry Smith } 1682dfb205c3SBarry Smith for (i=0; i<m; i++) { 1683dfb205c3SBarry Smith PetscInt row = i + rstart; 1684dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1685dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1686dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1687dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1688dfb205c3SBarry Smith } 1689dfb205c3SBarry Smith 1690dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1691dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1692dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16937827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1694dfb205c3SBarry Smith PetscFunctionReturn(0); 1695dfb205c3SBarry Smith } 1696dfb205c3SBarry Smith 1697611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 16988cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1699611f576cSBarry Smith #endif 1700b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 17018cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1702b5e56a35SBarry Smith #endif 17035c9eb25fSBarry Smith 17040bad9183SKris Buschelman /*MC 1705fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1706828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1707828413b8SBarry Smith the matrix is stored. 1708828413b8SBarry Smith 1709828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1710828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17110bad9183SKris Buschelman 17120bad9183SKris Buschelman Options Database Keys: 17130bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17140bad9183SKris Buschelman 17150bad9183SKris Buschelman Level: beginner 17160bad9183SKris Buschelman 17170bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17180bad9183SKris Buschelman M*/ 17190bad9183SKris Buschelman 17208cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1721aa5a9175SDahai Guo 1722a23d5eceSKris Buschelman #undef __FUNCT__ 17234a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17248cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1725b5df2d14SHong Zhang { 1726b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1727dfbe8321SBarry Smith PetscErrorCode ierr; 1728ace3abfcSBarry Smith PetscBool flg; 1729b5df2d14SHong Zhang 1730b5df2d14SHong Zhang PetscFunctionBegin; 1731b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1732b0a32e0cSBarry Smith B->data = (void*)b; 1733b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1734b5df2d14SHong Zhang 1735b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1736b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1737b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1738b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 173926fbe8dcSKarl Rupp 1740ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1741ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1742b5df2d14SHong Zhang 1743b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1744785e854fSJed Brown ierr = PetscMalloc1((b->size+2),&b->rangebs);CHKERRQ(ierr); 1745b5df2d14SHong Zhang 1746b5df2d14SHong Zhang /* build cache for off array entries formed */ 1747ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 174826fbe8dcSKarl Rupp 1749b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 17500298fd71SBarry Smith b->colmap = NULL; 17510298fd71SBarry Smith b->garray = NULL; 1752b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1753b5df2d14SHong Zhang 1754b5df2d14SHong Zhang /* stuff used in block assembly */ 1755b5df2d14SHong Zhang b->barray = 0; 1756b5df2d14SHong Zhang 1757b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1758b5df2d14SHong Zhang b->lvec = 0; 1759b5df2d14SHong Zhang b->Mvctx = 0; 176040781036SHong Zhang b->slvec0 = 0; 176140781036SHong Zhang b->slvec0b = 0; 176240781036SHong Zhang b->slvec1 = 0; 176340781036SHong Zhang b->slvec1a = 0; 176440781036SHong Zhang b->slvec1b = 0; 176540781036SHong Zhang b->sMvctx = 0; 1766b5df2d14SHong Zhang 1767b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1768b5df2d14SHong Zhang b->rowindices = 0; 1769b5df2d14SHong Zhang b->rowvalues = 0; 1770b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1771b5df2d14SHong Zhang 1772b5df2d14SHong Zhang /* hash table stuff */ 1773b5df2d14SHong Zhang b->ht = 0; 1774b5df2d14SHong Zhang b->hd = 0; 1775b5df2d14SHong Zhang b->ht_size = 0; 1776b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1777b5df2d14SHong Zhang b->ht_fact = 0; 1778b5df2d14SHong Zhang b->ht_total_ct = 0; 1779b5df2d14SHong Zhang b->ht_insert_ct = 0; 1780b5df2d14SHong Zhang 17817a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 17827a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 17837a868f3eSHong Zhang 178459ffdab8SBarry Smith b->in_loc = 0; 178559ffdab8SBarry Smith b->v_loc = 0; 178659ffdab8SBarry Smith b->n_loc = 0; 1787ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17880298fd71SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr); 1789b5df2d14SHong Zhang if (flg) { 1790f6275e2eSBarry Smith PetscReal fact = 1.39; 17914e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17920298fd71SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 1793b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1794b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17951e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1796b5df2d14SHong Zhang } 17978c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17988c07d4e3SBarry Smith 1799b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1800bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1801b5e56a35SBarry Smith #endif 1802611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1803bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1804611f576cSBarry Smith #endif 1805bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1806bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1807bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1808bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1809bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1810bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1811aa5a9175SDahai Guo 181223ce1328SBarry Smith B->symmetric = PETSC_TRUE; 181323ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 181423ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 181523ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 181626fbe8dcSKarl Rupp 181717667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1818b5df2d14SHong Zhang PetscFunctionReturn(0); 1819b5df2d14SHong Zhang } 1820b5df2d14SHong Zhang 1821209238afSKris Buschelman /*MC 1822002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1823209238afSKris Buschelman 1824209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1825209238afSKris Buschelman and MATMPISBAIJ otherwise. 1826209238afSKris Buschelman 1827209238afSKris Buschelman Options Database Keys: 1828209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1829209238afSKris Buschelman 1830209238afSKris Buschelman Level: beginner 1831209238afSKris Buschelman 1832209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1833209238afSKris Buschelman M*/ 1834209238afSKris Buschelman 18354a2ae208SSatish Balay #undef __FUNCT__ 18364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1837b5df2d14SHong Zhang /*@C 1838b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1839b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1840b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1841b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1842b5df2d14SHong Zhang 1843b5df2d14SHong Zhang Collective on Mat 1844b5df2d14SHong Zhang 1845b5df2d14SHong Zhang Input Parameters: 1846*1c4f3114SJed Brown + B - the matrix 1847b5df2d14SHong Zhang . bs - size of blockk 1848b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1849b5df2d14SHong Zhang submatrix (same for all local rows) 1850b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18516d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18520298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 185395742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1854b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1855b5df2d14SHong Zhang submatrix (same for all local rows). 1856b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1857c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 18580298fd71SBarry Smith (possibly different for each block row) or NULL. 1859b5df2d14SHong Zhang 1860b5df2d14SHong Zhang 1861b5df2d14SHong Zhang Options Database Keys: 1862b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1863b5df2d14SHong Zhang block calculations (much slower) 1864b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1865b5df2d14SHong Zhang 1866b5df2d14SHong Zhang Notes: 1867b5df2d14SHong Zhang 1868b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1869b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1870b5df2d14SHong Zhang 187149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187249a6f317SBarry Smith 1873b5df2d14SHong Zhang Storage Information: 1874b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1875b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1876b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1877b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1878b5df2d14SHong Zhang 1879b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1880b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 18810298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1882b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1883b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1884b5df2d14SHong Zhang 1885aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1886aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1887aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1888aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1889aa95bbe8SBarry Smith 1890b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1891b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1892b5df2d14SHong Zhang 1893b5df2d14SHong Zhang .vb 1894b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1895a4b1a0f6SJed Brown -------------------------- 1896c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 1897c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 1898c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 1899a4b1a0f6SJed Brown -------------------------- 1900b5df2d14SHong Zhang .ve 1901b5df2d14SHong Zhang 1902b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1903b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19046d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19056d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1906b5df2d14SHong Zhang 19076d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19086d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1909c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1910c2fc9fa9SBarry Smith 1911b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1912b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1913b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1914b5df2d14SHong Zhang matrices. 1915b5df2d14SHong Zhang 1916b5df2d14SHong Zhang Level: intermediate 1917b5df2d14SHong Zhang 1918b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1919b5df2d14SHong Zhang 1920ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 1921b5df2d14SHong Zhang @*/ 19227087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1923b5df2d14SHong Zhang { 19244ac538c5SBarry Smith PetscErrorCode ierr; 1925b5df2d14SHong Zhang 1926b5df2d14SHong Zhang PetscFunctionBegin; 19276ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19286ba663aaSJed Brown PetscValidType(B,1); 19296ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19304ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1931b5df2d14SHong Zhang PetscFunctionReturn(0); 1932b5df2d14SHong Zhang } 1933b5df2d14SHong Zhang 19344a2ae208SSatish Balay #undef __FUNCT__ 193569b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 1936a30f8f8cSSatish Balay /*@C 193769b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1938a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1939a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1940a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1941a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1942a30f8f8cSSatish Balay 1943a30f8f8cSSatish Balay Collective on MPI_Comm 1944a30f8f8cSSatish Balay 1945a30f8f8cSSatish Balay Input Parameters: 1946a30f8f8cSSatish Balay + comm - MPI communicator 1947a30f8f8cSSatish Balay . bs - size of blockk 1948a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1949a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1950a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1951a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1952a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1953a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1954a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1955a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1956a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1957a30f8f8cSSatish Balay submatrix (same for all local rows) 1958a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19596d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19600298fd71SBarry Smith (possibly different for each block block row) or NULL. 196195742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 196295742e49SBarry Smith set its value even if it is zero. 1963a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1964a30f8f8cSSatish Balay submatrix (same for all local rows). 1965a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1966a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 19670298fd71SBarry Smith each block row) or NULL. 1968a30f8f8cSSatish Balay 1969a30f8f8cSSatish Balay Output Parameter: 1970a30f8f8cSSatish Balay . A - the matrix 1971a30f8f8cSSatish Balay 1972a30f8f8cSSatish Balay Options Database Keys: 1973a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1974a30f8f8cSSatish Balay block calculations (much slower) 1975a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1976a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1977a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1978a30f8f8cSSatish Balay 1979175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1980ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1981175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1982175b88e8SBarry Smith 1983a30f8f8cSSatish Balay Notes: 1984d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19856d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1986d1be2dadSMatthew Knepley 1987a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1988a30f8f8cSSatish Balay (possibly both). 1989a30f8f8cSSatish Balay 1990a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1991a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1992a30f8f8cSSatish Balay 199349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 199449a6f317SBarry Smith 1995a30f8f8cSSatish Balay Storage Information: 1996a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1997a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1998a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1999a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2000a30f8f8cSSatish Balay 2001a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2002a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 20030298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2004a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2005a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2006a30f8f8cSSatish Balay 2007a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2008a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2009a30f8f8cSSatish Balay 2010a30f8f8cSSatish Balay .vb 2011a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2012a4b1a0f6SJed Brown -------------------------- 2013c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2014c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2015c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2016a4b1a0f6SJed Brown -------------------------- 2017a30f8f8cSSatish Balay .ve 2018a30f8f8cSSatish Balay 2019a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2020a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20216d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20226d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2023a30f8f8cSSatish Balay 20246d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20256d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2026a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2027a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2028a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2029a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2030a30f8f8cSSatish Balay matrices. 2031a30f8f8cSSatish Balay 2032a30f8f8cSSatish Balay Level: intermediate 2033a30f8f8cSSatish Balay 2034a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2035a30f8f8cSSatish Balay 203669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2037a30f8f8cSSatish Balay @*/ 2038a30f8f8cSSatish Balay 203969b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2040a30f8f8cSSatish Balay { 20416849ba73SBarry Smith PetscErrorCode ierr; 20421302d50aSBarry Smith PetscMPIInt size; 2043a30f8f8cSSatish Balay 2044a30f8f8cSSatish Balay PetscFunctionBegin; 2045f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2046f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2047273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2048273d9f13SBarry Smith if (size > 1) { 2049b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2050b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2051273d9f13SBarry Smith } else { 2052273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2053273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2054273d9f13SBarry Smith } 2055a30f8f8cSSatish Balay PetscFunctionReturn(0); 2056a30f8f8cSSatish Balay } 2057a30f8f8cSSatish Balay 2058a30f8f8cSSatish Balay 20594a2ae208SSatish Balay #undef __FUNCT__ 20604a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20616849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2062a30f8f8cSSatish Balay { 2063a30f8f8cSSatish Balay Mat mat; 2064a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2065dfbe8321SBarry Smith PetscErrorCode ierr; 2066d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2067387bc808SHong Zhang PetscScalar *array; 2068a30f8f8cSSatish Balay 2069a30f8f8cSSatish Balay PetscFunctionBegin; 2070a30f8f8cSSatish Balay *newmat = 0; 207126fbe8dcSKarl Rupp 2072ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2073d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20747adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20751d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 20761e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 20771e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2078e1b6402fSHong Zhang 2079d5f3da31SBarry Smith mat->factortype = matin->factortype; 2080273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 208182327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20827fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20837fff6886SHong Zhang 2084b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2085a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2086a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2087a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2088a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2089a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2090a30f8f8cSSatish Balay 2091899cda47SBarry Smith 2092a30f8f8cSSatish Balay a->size = oldmat->size; 2093a30f8f8cSSatish Balay a->rank = oldmat->rank; 2094a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2095a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2096a30f8f8cSSatish Balay a->rowindices = 0; 2097a30f8f8cSSatish Balay a->rowvalues = 0; 2098a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2099a30f8f8cSSatish Balay a->barray = 0; 2100899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2101899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2102899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2103899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2104a30f8f8cSSatish Balay 2105a30f8f8cSSatish Balay /* hash table stuff */ 2106a30f8f8cSSatish Balay a->ht = 0; 2107a30f8f8cSSatish Balay a->hd = 0; 2108a30f8f8cSSatish Balay a->ht_size = 0; 2109a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2110a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2111a30f8f8cSSatish Balay a->ht_total_ct = 0; 2112a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2113a30f8f8cSSatish Balay 2114899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2115a30f8f8cSSatish Balay if (oldmat->colmap) { 2116a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2117a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2118a30f8f8cSSatish Balay #else 2119785e854fSJed Brown ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr); 21203bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21211302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2122a30f8f8cSSatish Balay #endif 2123a30f8f8cSSatish Balay } else a->colmap = 0; 2124387bc808SHong Zhang 2125a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2126785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 21273bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21281302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2129a30f8f8cSSatish Balay } else a->garray = 0; 2130a30f8f8cSSatish Balay 2131ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2132a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 21333bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2134a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 21353bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 213682327fa8SHong Zhang 213782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 21383bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 213982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 21403bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2141387bc808SHong Zhang 2142387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21431ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2144778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2145778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21461ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21471ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2148778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21491ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 21503bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 21513bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 21523bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 21533bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 21543bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2155387bc808SHong Zhang 2156387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2157387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2158387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 21593bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 216082327fa8SHong Zhang 2161a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 21623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2163a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 21643bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2165140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay *newmat = mat; 2167a30f8f8cSSatish Balay PetscFunctionReturn(0); 2168a30f8f8cSSatish Balay } 2169a30f8f8cSSatish Balay 21704a2ae208SSatish Balay #undef __FUNCT__ 21715bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2172112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 217395936485SShri Abhyankar { 217495936485SShri Abhyankar PetscErrorCode ierr; 217595936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 217695936485SShri Abhyankar PetscScalar *vals,*buf; 2177ce94432eSBarry Smith MPI_Comm comm; 217895936485SShri Abhyankar MPI_Status status; 2179adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2180adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 218195936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 218295936485SShri Abhyankar PetscInt bs =1,Mbs,mbs,extra_rows; 218395936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 218495936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 218595936485SShri Abhyankar int fd; 218695936485SShri Abhyankar 218795936485SShri Abhyankar PetscFunctionBegin; 2188ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 21890298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21900298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 219195936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 219295936485SShri Abhyankar 219395936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 219495936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 219595936485SShri Abhyankar if (!rank) { 219695936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 219795936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 219895936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 219995936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 220095936485SShri Abhyankar } 220195936485SShri Abhyankar 220295936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 220395936485SShri Abhyankar 220495936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 220526fbe8dcSKarl Rupp M = header[1]; 220626fbe8dcSKarl Rupp N = header[2]; 220795936485SShri Abhyankar 220895936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 220995936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 221095936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 221195936485SShri Abhyankar 221295936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 221395936485SShri Abhyankar if (sizesset) { 221495936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 221595936485SShri Abhyankar } 2216abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2217abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 221895936485SShri Abhyankar 221995936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 222095936485SShri Abhyankar 222195936485SShri Abhyankar /* 222295936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 222395936485SShri Abhyankar divisible by the blocksize 222495936485SShri Abhyankar */ 222595936485SShri Abhyankar Mbs = M/bs; 222695936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 222795936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 222895936485SShri Abhyankar else Mbs++; 222995936485SShri Abhyankar if (extra_rows &&!rank) { 223095936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 223195936485SShri Abhyankar } 223295936485SShri Abhyankar 223395936485SShri Abhyankar /* determine ownership of all rows */ 223495936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 223595936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 223695936485SShri Abhyankar m = mbs*bs; 223795936485SShri Abhyankar } else { /* User Set */ 223895936485SShri Abhyankar m = newmat->rmap->n; 223995936485SShri Abhyankar mbs = m/bs; 224095936485SShri Abhyankar } 2241dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 22424dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 224395936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 224495936485SShri Abhyankar rowners[0] = 0; 224595936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 224695936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 224795936485SShri Abhyankar rstart = rowners[rank]; 224895936485SShri Abhyankar rend = rowners[rank+1]; 224995936485SShri Abhyankar 225095936485SShri Abhyankar /* distribute row lengths to all processors */ 2251785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 225295936485SShri Abhyankar if (!rank) { 2253785e854fSJed Brown ierr = PetscMalloc1((M+extra_rows),&rowlengths);CHKERRQ(ierr); 225495936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 225595936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2256785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 225795936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 225895936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 225995936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 226095936485SShri Abhyankar } else { 226195936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 226295936485SShri Abhyankar } 226395936485SShri Abhyankar 226495936485SShri Abhyankar if (!rank) { /* procs[0] */ 226595936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2266785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 226795936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 226895936485SShri Abhyankar for (i=0; i<size; i++) { 226995936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 227095936485SShri Abhyankar procsnz[i] += rowlengths[j]; 227195936485SShri Abhyankar } 227295936485SShri Abhyankar } 227395936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 227495936485SShri Abhyankar 227595936485SShri Abhyankar /* determine max buffer needed and allocate it */ 227695936485SShri Abhyankar maxnz = 0; 227795936485SShri Abhyankar for (i=0; i<size; i++) { 227895936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 227995936485SShri Abhyankar } 2280785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 228195936485SShri Abhyankar 228295936485SShri Abhyankar /* read in my part of the matrix column indices */ 228395936485SShri Abhyankar nz = procsnz[0]; 2284785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 228595936485SShri Abhyankar mycols = ibuf; 228695936485SShri Abhyankar if (size == 1) nz -= extra_rows; 228795936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 228826fbe8dcSKarl Rupp if (size == 1) { 228926fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 229026fbe8dcSKarl Rupp } 229195936485SShri Abhyankar 229295936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 229395936485SShri Abhyankar for (i=1; i<size-1; i++) { 229495936485SShri Abhyankar nz = procsnz[i]; 229595936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 229695936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 229795936485SShri Abhyankar } 229895936485SShri Abhyankar /* read in the stuff for the last proc */ 229995936485SShri Abhyankar if (size != 1) { 230095936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 230195936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 230295936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 230395936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 230495936485SShri Abhyankar } 230595936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 230695936485SShri Abhyankar } else { /* procs[i], i>0 */ 230795936485SShri Abhyankar /* determine buffer space needed for message */ 230895936485SShri Abhyankar nz = 0; 230926fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2310785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 231195936485SShri Abhyankar mycols = ibuf; 231295936485SShri Abhyankar /* receive message of column indices*/ 231395936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 231495936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 231595936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 231695936485SShri Abhyankar } 231795936485SShri Abhyankar 231895936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2319dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2320dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 232195936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232295936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232395936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232495936485SShri Abhyankar rowcount = 0; 232595936485SShri Abhyankar nzcount = 0; 232695936485SShri Abhyankar for (i=0; i<mbs; i++) { 232795936485SShri Abhyankar dcount = 0; 232895936485SShri Abhyankar odcount = 0; 232995936485SShri Abhyankar for (j=0; j<bs; j++) { 233095936485SShri Abhyankar kmax = locrowlens[rowcount]; 233195936485SShri Abhyankar for (k=0; k<kmax; k++) { 233295936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 233395936485SShri Abhyankar if (!mask[tmp]) { 233495936485SShri Abhyankar mask[tmp] = 1; 233595936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 233695936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 233795936485SShri Abhyankar } 233895936485SShri Abhyankar } 233995936485SShri Abhyankar rowcount++; 234095936485SShri Abhyankar } 234195936485SShri Abhyankar 234295936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 234395936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 234495936485SShri Abhyankar 234595936485SShri Abhyankar /* zero out the mask elements we set */ 234695936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 234795936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 234895936485SShri Abhyankar } 234995936485SShri Abhyankar if (!sizesset) { 235095936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 235195936485SShri Abhyankar } 235295936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 23536816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 235495936485SShri Abhyankar 235595936485SShri Abhyankar if (!rank) { 2356785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 235795936485SShri Abhyankar /* read in my part of the matrix numerical values */ 235895936485SShri Abhyankar nz = procsnz[0]; 235995936485SShri Abhyankar vals = buf; 236095936485SShri Abhyankar mycols = ibuf; 236195936485SShri Abhyankar if (size == 1) nz -= extra_rows; 236295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 236326fbe8dcSKarl Rupp if (size == 1) { 236426fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 236526fbe8dcSKarl Rupp } 236695936485SShri Abhyankar 236795936485SShri Abhyankar /* insert into matrix */ 236895936485SShri Abhyankar jj = rstart*bs; 236995936485SShri Abhyankar for (i=0; i<m; i++) { 237095936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 237195936485SShri Abhyankar mycols += locrowlens[i]; 237295936485SShri Abhyankar vals += locrowlens[i]; 237395936485SShri Abhyankar jj++; 237495936485SShri Abhyankar } 237595936485SShri Abhyankar 237695936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 237795936485SShri Abhyankar for (i=1; i<size-1; i++) { 237895936485SShri Abhyankar nz = procsnz[i]; 237995936485SShri Abhyankar vals = buf; 238095936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238195936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 238295936485SShri Abhyankar } 238395936485SShri Abhyankar /* the last proc */ 238495936485SShri Abhyankar if (size != 1) { 238595936485SShri Abhyankar nz = procsnz[i] - extra_rows; 238695936485SShri Abhyankar vals = buf; 238795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238895936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 238995936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 239095936485SShri Abhyankar } 239195936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 239295936485SShri Abhyankar 239395936485SShri Abhyankar } else { 239495936485SShri Abhyankar /* receive numeric values */ 2395785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 239695936485SShri Abhyankar 239795936485SShri Abhyankar /* receive message of values*/ 239895936485SShri Abhyankar vals = buf; 239995936485SShri Abhyankar mycols = ibuf; 240095936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 240195936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 240295936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 240395936485SShri Abhyankar 240495936485SShri Abhyankar /* insert into matrix */ 240595936485SShri Abhyankar jj = rstart*bs; 240695936485SShri Abhyankar for (i=0; i<m; i++) { 240795936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 240895936485SShri Abhyankar mycols += locrowlens[i]; 240995936485SShri Abhyankar vals += locrowlens[i]; 241095936485SShri Abhyankar jj++; 241195936485SShri Abhyankar } 241295936485SShri Abhyankar } 241395936485SShri Abhyankar 241495936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 241595936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 241695936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 241795936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 241895936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 241995936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 242095936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 242195936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 242295936485SShri Abhyankar PetscFunctionReturn(0); 242395936485SShri Abhyankar } 242495936485SShri Abhyankar 242595936485SShri Abhyankar #undef __FUNCT__ 24264a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2427dcf5cc72SBarry Smith /*XXXXX@ 2428a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2429a30f8f8cSSatish Balay 2430a30f8f8cSSatish Balay Input Parameters: 2431a30f8f8cSSatish Balay . mat - the matrix 2432a30f8f8cSSatish Balay . fact - factor 2433a30f8f8cSSatish Balay 2434c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2435a30f8f8cSSatish Balay 2436a30f8f8cSSatish Balay Level: advanced 2437a30f8f8cSSatish Balay 2438a30f8f8cSSatish Balay Notes: 2439a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2440a30f8f8cSSatish Balay 2441a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2442a30f8f8cSSatish Balay 2443a30f8f8cSSatish Balay .seealso: MatSetOption() 2444dcf5cc72SBarry Smith @XXXXX*/ 2445dcf5cc72SBarry Smith 244624d5174aSHong Zhang 24474a2ae208SSatish Balay #undef __FUNCT__ 2448985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2449985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 245024d5174aSHong Zhang { 245124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2452f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2453ca54ac64SHong Zhang PetscReal atmp; 245487828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2455dfbe8321SBarry Smith PetscErrorCode ierr; 24561302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24571302d50aSBarry Smith PetscMPIInt rank,size; 24581302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 245987828ca2SBarry Smith PetscScalar *va; 24608a1c53f2SBarry Smith MatScalar *ba; 2461f4c0e9e4SHong Zhang MPI_Status stat; 246224d5174aSHong Zhang 246324d5174aSHong Zhang PetscFunctionBegin; 2464e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 24650298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 24661ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2467f4c0e9e4SHong Zhang 2468ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2469ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2470f4c0e9e4SHong Zhang 2471d0f46423SBarry Smith bs = A->rmap->bs; 2472f4c0e9e4SHong Zhang mbs = a->mbs; 2473f4c0e9e4SHong Zhang Mbs = a->Mbs; 2474f4c0e9e4SHong Zhang ba = b->a; 2475f4c0e9e4SHong Zhang bi = b->i; 2476f4c0e9e4SHong Zhang bj = b->j; 2477f4c0e9e4SHong Zhang 2478f4c0e9e4SHong Zhang /* find ownerships */ 2479d0f46423SBarry Smith rowners_bs = A->rmap->range; 2480f4c0e9e4SHong Zhang 2481f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2482785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2483ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2484f4c0e9e4SHong Zhang 2485f4c0e9e4SHong Zhang /* row_max for B */ 2486b8475685SHong Zhang if (rank != size-1) { 2487f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2488f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2489f4c0e9e4SHong Zhang brow = bs*i; 2490f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2491f4c0e9e4SHong Zhang bcol = bs*(*bj); 2492f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2493ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 249404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2495f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2496f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2497ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2498ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2499f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2500f4c0e9e4SHong Zhang } 2501f4c0e9e4SHong Zhang } 2502f4c0e9e4SHong Zhang bj++; 2503f4c0e9e4SHong Zhang } 2504f4c0e9e4SHong Zhang } 2505f4c0e9e4SHong Zhang 2506f4c0e9e4SHong Zhang /* send values to its owners */ 2507f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2508f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2509ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2510ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2511ca54ac64SHong Zhang } 2512f4c0e9e4SHong Zhang } 2513f4c0e9e4SHong Zhang 2514f4c0e9e4SHong Zhang /* receive values */ 2515ca54ac64SHong Zhang if (rank) { 2516f4c0e9e4SHong Zhang rvalues = work; 2517ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2518f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2519ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2520f4c0e9e4SHong Zhang /* process values */ 2521f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2522ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2523f4c0e9e4SHong Zhang } 2524f4c0e9e4SHong Zhang } 2525ca54ac64SHong Zhang } 2526f4c0e9e4SHong Zhang 25271ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2528ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 252924d5174aSHong Zhang PetscFunctionReturn(0); 253024d5174aSHong Zhang } 25312798e883SHong Zhang 25322798e883SHong Zhang #undef __FUNCT__ 253341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 253441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25352798e883SHong Zhang { 25362798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2537dfbe8321SBarry Smith PetscErrorCode ierr; 2538d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25393649974fSBarry Smith PetscScalar *x,*ptr,*from; 2540ffe4fb16SHong Zhang Vec bb1; 25413649974fSBarry Smith const PetscScalar *b; 2542ffe4fb16SHong Zhang 2543ffe4fb16SHong Zhang PetscFunctionBegin; 2544e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2545e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2546ffe4fb16SHong Zhang 2547a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 254841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2549a2b30743SBarry Smith PetscFunctionReturn(0); 2550a2b30743SBarry Smith } 2551a2b30743SBarry Smith 2552ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2553ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 255441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2555ffe4fb16SHong Zhang its--; 2556ffe4fb16SHong Zhang } 2557ffe4fb16SHong Zhang 2558ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2559ffe4fb16SHong Zhang while (its--) { 2560ffe4fb16SHong Zhang 2561ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2562ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2563ffe4fb16SHong Zhang 2564ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25651ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25661ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2567ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25681ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2569ffe4fb16SHong Zhang 2570efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2571ffe4fb16SHong Zhang 2572ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25731ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25743649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2575ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25761ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2577ffe4fb16SHong Zhang 2578ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2579fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2580ffe4fb16SHong Zhang 2581ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25821ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2583a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2584ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2585ffe4fb16SHong Zhang 2586ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2587ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2588ffe4fb16SHong Zhang 2589ffe4fb16SHong Zhang /* local diagonal sweep */ 259041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2591ffe4fb16SHong Zhang } 25926bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2593fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 259441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2595fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 259641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2597fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2598fa22f6d0SBarry Smith Vec xx1; 2599ace3abfcSBarry Smith PetscBool hasop; 260020f1ed55SBarry Smith const PetscScalar *diag; 2601887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 260220f1ed55SBarry Smith PetscInt i,n; 2603fa22f6d0SBarry Smith 2604fa22f6d0SBarry Smith if (!mat->xx1) { 2605fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2606fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2607fa22f6d0SBarry Smith } 2608fa22f6d0SBarry Smith xx1 = mat->xx1; 2609fa22f6d0SBarry Smith bb1 = mat->bb1; 2610fa22f6d0SBarry Smith 261141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2612fa22f6d0SBarry Smith 2613fa22f6d0SBarry Smith if (!mat->diag) { 2614effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26150298fd71SBarry Smith ierr = MatGetVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2616fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2617fa22f6d0SBarry Smith } 2618fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2619fa22f6d0SBarry Smith 2620fa22f6d0SBarry Smith if (hasop) { 2621fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2622887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 262320f1ed55SBarry Smith } else { 262420f1ed55SBarry Smith /* 262520f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 262620f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2627887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 262820f1ed55SBarry Smith */ 262920f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26303649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26313649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 263220f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 263320f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2634887ee2caSBarry Smith if (omega == 1.0) { 263526fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 263620f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2637887ee2caSBarry Smith } else { 263826fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2639887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2640887ee2caSBarry Smith } 264120f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26423649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26433649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 264420f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 264520f1ed55SBarry Smith } 2646fa22f6d0SBarry Smith 2647fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2648fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2649fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2650fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2651fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2652fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2653fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2654fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2655fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2656fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2657effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2658fa22f6d0SBarry Smith 2659fa22f6d0SBarry Smith /* local sweep */ 266041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2661fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2662f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2663ffe4fb16SHong Zhang PetscFunctionReturn(0); 2664ffe4fb16SHong Zhang } 2665ffe4fb16SHong Zhang 2666ffe4fb16SHong Zhang #undef __FUNCT__ 266741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 266841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2669ffe4fb16SHong Zhang { 2670ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2671dfbe8321SBarry Smith PetscErrorCode ierr; 26722798e883SHong Zhang Vec lvec1,bb1; 26732798e883SHong Zhang 26742798e883SHong Zhang PetscFunctionBegin; 2675e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2676e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26772798e883SHong Zhang 2678c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 26792798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 268041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26812798e883SHong Zhang its--; 26822798e883SHong Zhang } 26832798e883SHong Zhang 26842798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26852798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26862798e883SHong Zhang while (its--) { 2687ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26882798e883SHong Zhang 26892798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26902798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2691efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26922798e883SHong Zhang 2693ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26942798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2695ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26962798e883SHong Zhang 26972798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2698efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26992798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27002798e883SHong Zhang 2701ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27022798e883SHong Zhang 2703c14dc6b6SHong Zhang /* diagonal sweep */ 270441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27052798e883SHong Zhang } 27066bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27076bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27086bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27092798e883SHong Zhang PetscFunctionReturn(0); 27102798e883SHong Zhang } 27112798e883SHong Zhang 2712dfb205c3SBarry Smith #undef __FUNCT__ 2713dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2714dfb205c3SBarry Smith /*@ 2715dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2716dfb205c3SBarry Smith CSR format the local rows. 2717dfb205c3SBarry Smith 2718dfb205c3SBarry Smith Collective on MPI_Comm 2719dfb205c3SBarry Smith 2720dfb205c3SBarry Smith Input Parameters: 2721dfb205c3SBarry Smith + comm - MPI communicator 2722dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2723dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2724dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2725dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2726dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2727dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2728dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2729dfb205c3SBarry Smith . i - row indices 2730dfb205c3SBarry Smith . j - column indices 2731dfb205c3SBarry Smith - a - matrix values 2732dfb205c3SBarry Smith 2733dfb205c3SBarry Smith Output Parameter: 2734dfb205c3SBarry Smith . mat - the matrix 2735dfb205c3SBarry Smith 2736dfb205c3SBarry Smith Level: intermediate 2737dfb205c3SBarry Smith 2738dfb205c3SBarry Smith Notes: 2739dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2740dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2741dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2742dfb205c3SBarry Smith 2743dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2744dfb205c3SBarry Smith 2745dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2746dfb205c3SBarry Smith 2747dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 274869b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2749dfb205c3SBarry Smith @*/ 27507087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2751dfb205c3SBarry Smith { 2752dfb205c3SBarry Smith PetscErrorCode ierr; 2753dfb205c3SBarry Smith 2754dfb205c3SBarry Smith 2755dfb205c3SBarry Smith PetscFunctionBegin; 2756f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2757dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2758dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2759dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2760dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2761dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2762dfb205c3SBarry Smith PetscFunctionReturn(0); 2763dfb205c3SBarry Smith } 2764dfb205c3SBarry Smith 2765dfb205c3SBarry Smith 2766dfb205c3SBarry Smith #undef __FUNCT__ 2767dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2768dfb205c3SBarry Smith /*@C 2769dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2770dfb205c3SBarry Smith (the default parallel PETSc format). 2771dfb205c3SBarry Smith 2772dfb205c3SBarry Smith Collective on MPI_Comm 2773dfb205c3SBarry Smith 2774dfb205c3SBarry Smith Input Parameters: 2775*1c4f3114SJed Brown + B - the matrix 2776dfb205c3SBarry Smith . bs - the block size 2777dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2778dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2779dfb205c3SBarry Smith - v - optional values in the matrix 2780dfb205c3SBarry Smith 2781dfb205c3SBarry Smith Level: developer 2782dfb205c3SBarry Smith 2783dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2784dfb205c3SBarry Smith 278569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2786dfb205c3SBarry Smith @*/ 27877087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2788dfb205c3SBarry Smith { 27894ac538c5SBarry Smith PetscErrorCode ierr; 2790dfb205c3SBarry Smith 2791dfb205c3SBarry Smith PetscFunctionBegin; 27924ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2793dfb205c3SBarry Smith PetscFunctionReturn(0); 2794dfb205c3SBarry Smith } 2795dfb205c3SBarry Smith 2796dfb205c3SBarry Smith 2797