1a30f8f8cSSatish Balay 2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 3a30f8f8cSSatish Balay #include "mpisbaij.h" 4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 5a30f8f8cSSatish Balay 6a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 740781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 8a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 9d94109b8SHong Zhang extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS[],int); 10f15d580aSBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 11e249d750SSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 12f15d580aSBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,const int [],int,const int [],const PetscScalar [],InsertMode); 13f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 14e249d750SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 1587828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1687828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 17a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1887828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 1987828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 21c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 31f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 32f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 33f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 34f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 35f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50a30f8f8cSSatish Balay int ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65a30f8f8cSSatish Balay int ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101a45adfd6SMatthew Knepley else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 102a30f8f8cSSatish Balay if (nrow >= rmax) { \ 103a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 104a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 105a30f8f8cSSatish Balay MatScalar *new_a; \ 106a30f8f8cSSatish Balay \ 107a45adfd6SMatthew Knepley if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 108a30f8f8cSSatish Balay \ 109a30f8f8cSSatish Balay /* malloc new storage space */ \ 110a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 11182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 112a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 113a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 114a30f8f8cSSatish Balay \ 115a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 116a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 117a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 118a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 120a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12287828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 124a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay /* free up old matrix storage */ \ 126a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 128a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 130a30f8f8cSSatish Balay } \ 131a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 132a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 133a30f8f8cSSatish Balay \ 134a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 135a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 136b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 1376c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 138a30f8f8cSSatish Balay a->reallocs++; \ 1396c6c5352SBarry Smith a->nz++; \ 140a30f8f8cSSatish Balay } \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay a_noinsert:; \ 151a30f8f8cSSatish Balay ailen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 154a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 155a30f8f8cSSatish Balay { \ 156a30f8f8cSSatish Balay brow = row/bs; \ 157a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 158a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 159a30f8f8cSSatish Balay bcol = col/bs; \ 160a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 161a30f8f8cSSatish Balay low = 0; high = nrow; \ 162a30f8f8cSSatish Balay while (high-low > 3) { \ 163a30f8f8cSSatish Balay t = (low+high)/2; \ 164a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 165a30f8f8cSSatish Balay else low = t; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 168a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 169a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 170a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 171a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 172a30f8f8cSSatish Balay else *bap = value; \ 173a30f8f8cSSatish Balay goto b_noinsert; \ 174a30f8f8cSSatish Balay } \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 177a45adfd6SMatthew Knepley else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 178a30f8f8cSSatish Balay if (nrow >= rmax) { \ 179a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 180a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 181a30f8f8cSSatish Balay MatScalar *new_a; \ 182a30f8f8cSSatish Balay \ 183a45adfd6SMatthew Knepley if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 184a30f8f8cSSatish Balay \ 185a30f8f8cSSatish Balay /* malloc new storage space */ \ 186a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 18782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 188a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 189a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 190a30f8f8cSSatish Balay \ 191a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 192a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 193a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 194a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 195a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 196a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 200a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay /* free up old matrix storage */ \ 202a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 204a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 208a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 209a30f8f8cSSatish Balay \ 210a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 211a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 212b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 213a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 214a30f8f8cSSatish Balay b->reallocs++; \ 215a30f8f8cSSatish Balay b->nz++; \ 216a30f8f8cSSatish Balay } \ 217a30f8f8cSSatish Balay N = nrow++ - 1; \ 218a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 219a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 220a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 221a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 224a30f8f8cSSatish Balay rp[_i] = bcol; \ 225a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 226a30f8f8cSSatish Balay b_noinsert:; \ 227a30f8f8cSSatish Balay bilen[brow] = nrow; \ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay #endif 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 234f15d580aSBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 235a30f8f8cSSatish Balay { 236a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 237a30f8f8cSSatish Balay int ierr,i,N = m*n; 238a30f8f8cSSatish Balay MatScalar *vsingle; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay PetscFunctionBegin; 241a30f8f8cSSatish Balay if (N > b->setvalueslen) { 242a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 244a30f8f8cSSatish Balay b->setvalueslen = N; 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 247a30f8f8cSSatish Balay 248a30f8f8cSSatish Balay for (i=0; i<N; i++) { 249a30f8f8cSSatish Balay vsingle[i] = v[i]; 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 252a30f8f8cSSatish Balay PetscFunctionReturn(0); 253a30f8f8cSSatish Balay } 254a30f8f8cSSatish Balay 2554a2ae208SSatish Balay #undef __FUNCT__ 2564a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 257f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 258a30f8f8cSSatish Balay { 259a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 260a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 261a30f8f8cSSatish Balay MatScalar *vsingle; 262a30f8f8cSSatish Balay 263a30f8f8cSSatish Balay PetscFunctionBegin; 264a30f8f8cSSatish Balay if (N > b->setvalueslen) { 265a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26682502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 267a30f8f8cSSatish Balay b->setvalueslen = N; 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 270a30f8f8cSSatish Balay for (i=0; i<N; i++) { 271a30f8f8cSSatish Balay vsingle[i] = v[i]; 272a30f8f8cSSatish Balay } 273a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 274a30f8f8cSSatish Balay PetscFunctionReturn(0); 275a30f8f8cSSatish Balay } 276a30f8f8cSSatish Balay 2774a2ae208SSatish Balay #undef __FUNCT__ 2784a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 279f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 280a30f8f8cSSatish Balay { 281a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 282a30f8f8cSSatish Balay int ierr,i,N = m*n; 283a30f8f8cSSatish Balay MatScalar *vsingle; 284a30f8f8cSSatish Balay 285a30f8f8cSSatish Balay PetscFunctionBegin; 28629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 2874d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 288a30f8f8cSSatish Balay } 289a30f8f8cSSatish Balay 2904a2ae208SSatish Balay #undef __FUNCT__ 2914a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 292f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 293a30f8f8cSSatish Balay { 294a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 295a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 296a30f8f8cSSatish Balay MatScalar *vsingle; 297a30f8f8cSSatish Balay 298a30f8f8cSSatish Balay PetscFunctionBegin; 29929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3004d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 301a30f8f8cSSatish Balay } 302a30f8f8cSSatish Balay #endif 303a30f8f8cSSatish Balay 304a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 305a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 306a30f8f8cSSatish Balay */ 3074a2ae208SSatish Balay #undef __FUNCT__ 308e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 309f15d580aSBarry Smith int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 310a30f8f8cSSatish Balay { 311a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 312a30f8f8cSSatish Balay MatScalar value; 313b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 314a30f8f8cSSatish Balay int ierr,i,j,row,col; 315b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 316a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 317a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 318a30f8f8cSSatish Balay 319a30f8f8cSSatish Balay /* Some Variables required in the macro */ 320a30f8f8cSSatish Balay Mat A = baij->A; 321a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 322a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 323a30f8f8cSSatish Balay MatScalar *aa=a->a; 324a30f8f8cSSatish Balay 325a30f8f8cSSatish Balay Mat B = baij->B; 326a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 327a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 328a30f8f8cSSatish Balay MatScalar *ba=b->a; 329a30f8f8cSSatish Balay 330a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 331a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 332a30f8f8cSSatish Balay MatScalar *ap,*bap; 333a30f8f8cSSatish Balay 334a30f8f8cSSatish Balay /* for stash */ 335f65c83cfSHong Zhang int n_loc, *in_loc=0; 336f65c83cfSHong Zhang MatScalar *v_loc=0; 337a30f8f8cSSatish Balay 338a30f8f8cSSatish Balay PetscFunctionBegin; 339a30f8f8cSSatish Balay 340a30f8f8cSSatish Balay if(!baij->donotstash){ 34182502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 34282502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 343a30f8f8cSSatish Balay } 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay for (i=0; i<m; i++) { 346a30f8f8cSSatish Balay if (im[i] < 0) continue; 347a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 348590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 349a30f8f8cSSatish Balay #endif 350a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 351a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 352a30f8f8cSSatish Balay for (j=0; j<n; j++) { 353f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 354a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 355a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 356a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 357a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 358a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 359a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 360a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 361a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 362a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 363590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);} 364a30f8f8cSSatish Balay #endif 365a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 366a30f8f8cSSatish Balay if (mat->was_assembled) { 367a30f8f8cSSatish Balay if (!baij->colmap) { 368653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 369a30f8f8cSSatish Balay } 370a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 371a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 37271730473SSatish Balay col = col - 1; 373a30f8f8cSSatish Balay #else 37471730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 375a30f8f8cSSatish Balay #endif 376a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 377a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 378a30f8f8cSSatish Balay col = in[j]; 379a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 380a30f8f8cSSatish Balay B = baij->B; 381a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 382a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 383a30f8f8cSSatish Balay ba=b->a; 38471730473SSatish Balay } else col += in[j]%bs; 385a30f8f8cSSatish Balay } else col = in[j]; 386a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 387a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 388a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 389a30f8f8cSSatish Balay } 390a30f8f8cSSatish Balay } 391a30f8f8cSSatish Balay } else { /* off processor entry */ 392a30f8f8cSSatish Balay if (!baij->donotstash) { 393a30f8f8cSSatish Balay n_loc = 0; 394a30f8f8cSSatish Balay for (j=0; j<n; j++){ 395f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 396a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 397a30f8f8cSSatish Balay if (roworiented) { 398a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 399a30f8f8cSSatish Balay } else { 400a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay n_loc++; 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay } 407a30f8f8cSSatish Balay } 408a30f8f8cSSatish Balay 409a30f8f8cSSatish Balay if(!baij->donotstash){ 410a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 411a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 412a30f8f8cSSatish Balay } 413a30f8f8cSSatish Balay PetscFunctionReturn(0); 414a30f8f8cSSatish Balay } 415a30f8f8cSSatish Balay 4164a2ae208SSatish Balay #undef __FUNCT__ 417e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 418f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 419a30f8f8cSSatish Balay { 4200880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 421f15d580aSBarry Smith const MatScalar *value; 422f15d580aSBarry Smith MatScalar *barray=baij->barray; 4230880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 4240880e062SHong Zhang int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 4250880e062SHong Zhang int rend=baij->rend,cstart=baij->cstart,stepval; 4260880e062SHong Zhang int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4270880e062SHong Zhang 428a30f8f8cSSatish Balay PetscFunctionBegin; 4290880e062SHong Zhang if(!barray) { 4300880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4310880e062SHong Zhang baij->barray = barray; 4320880e062SHong Zhang } 4330880e062SHong Zhang 4340880e062SHong Zhang if (roworiented) { 4350880e062SHong Zhang stepval = (n-1)*bs; 4360880e062SHong Zhang } else { 4370880e062SHong Zhang stepval = (m-1)*bs; 4380880e062SHong Zhang } 4390880e062SHong Zhang for (i=0; i<m; i++) { 4400880e062SHong Zhang if (im[i] < 0) continue; 4410880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 442590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 4430880e062SHong Zhang #endif 4440880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4450880e062SHong Zhang row = im[i] - rstart; 4460880e062SHong Zhang for (j=0; j<n; j++) { 4470880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4480880e062SHong Zhang if ((roworiented) && (n == 1)) { 449f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4500880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 451f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4520880e062SHong Zhang } else { /* Here a copy is required */ 4530880e062SHong Zhang if (roworiented) { 4540880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4550880e062SHong Zhang } else { 4560880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4570880e062SHong Zhang } 4580880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4590880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4600880e062SHong Zhang *barray++ = *value++; 4610880e062SHong Zhang } 4620880e062SHong Zhang } 4630880e062SHong Zhang barray -=bs2; 4640880e062SHong Zhang } 4650880e062SHong Zhang 4660880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4670880e062SHong Zhang col = in[j] - cstart; 4680880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4690880e062SHong Zhang } 4700880e062SHong Zhang else if (in[j] < 0) continue; 4710880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 472590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 4730880e062SHong Zhang #endif 4740880e062SHong Zhang else { 4750880e062SHong Zhang if (mat->was_assembled) { 4760880e062SHong Zhang if (!baij->colmap) { 477653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4780880e062SHong Zhang } 4790880e062SHong Zhang 4800880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4810880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4820880e062SHong Zhang { int data; 4830880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4840880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4850880e062SHong Zhang } 4860880e062SHong Zhang #else 4870880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4880880e062SHong Zhang #endif 4890880e062SHong Zhang #endif 4900880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4910880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4920880e062SHong Zhang col = (col - 1)/bs; 4930880e062SHong Zhang #else 4940880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4950880e062SHong Zhang #endif 4960880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4970880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4980880e062SHong Zhang col = in[j]; 4990880e062SHong Zhang } 5000880e062SHong Zhang } 5010880e062SHong Zhang else col = in[j]; 502e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5030880e062SHong Zhang } 5040880e062SHong Zhang } 5050880e062SHong Zhang } else { 5060880e062SHong Zhang if (!baij->donotstash) { 5070880e062SHong Zhang if (roworiented) { 5080880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5090880e062SHong Zhang } else { 5100880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5110880e062SHong Zhang } 5120880e062SHong Zhang } 5130880e062SHong Zhang } 5140880e062SHong Zhang } 5150880e062SHong Zhang PetscFunctionReturn(0); 516a30f8f8cSSatish Balay } 517a30f8f8cSSatish Balay 518a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 519a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 520a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 521a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5224a2ae208SSatish Balay #undef __FUNCT__ 5234a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 524f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 525a30f8f8cSSatish Balay { 526a30f8f8cSSatish Balay PetscFunctionBegin; 52729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 52896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 529a30f8f8cSSatish Balay } 530a30f8f8cSSatish Balay 5314a2ae208SSatish Balay #undef __FUNCT__ 5324a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 533f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 534a30f8f8cSSatish Balay { 535a30f8f8cSSatish Balay PetscFunctionBegin; 53629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 53796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 538a30f8f8cSSatish Balay } 539a30f8f8cSSatish Balay 5404a2ae208SSatish Balay #undef __FUNCT__ 5414a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 542f15d580aSBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[]) 543a30f8f8cSSatish Balay { 544f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 545a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 546a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 547a30f8f8cSSatish Balay 548a30f8f8cSSatish Balay PetscFunctionBegin; 549a30f8f8cSSatish Balay for (i=0; i<m; i++) { 550590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 551590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 552a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 553a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 554a30f8f8cSSatish Balay for (j=0; j<n; j++) { 555590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]); 556590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 557a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 558a30f8f8cSSatish Balay col = idxn[j] - bscstart; 559c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 560a30f8f8cSSatish Balay } else { 561a30f8f8cSSatish Balay if (!baij->colmap) { 562653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 565a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 566a30f8f8cSSatish Balay data --; 567a30f8f8cSSatish Balay #else 568a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 569a30f8f8cSSatish Balay #endif 570a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 571a30f8f8cSSatish Balay else { 572a30f8f8cSSatish Balay col = data + idxn[j]%bs; 573e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 574a30f8f8cSSatish Balay } 575a30f8f8cSSatish Balay } 576a30f8f8cSSatish Balay } 577a30f8f8cSSatish Balay } else { 57829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 579a30f8f8cSSatish Balay } 580a30f8f8cSSatish Balay } 581a30f8f8cSSatish Balay PetscFunctionReturn(0); 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay 5844a2ae208SSatish Balay #undef __FUNCT__ 5854a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 586a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 587a30f8f8cSSatish Balay { 588a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 589bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 590bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 591a30f8f8cSSatish Balay int ierr; 592a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 593a30f8f8cSSatish Balay 594a30f8f8cSSatish Balay PetscFunctionBegin; 595a30f8f8cSSatish Balay if (baij->size == 1) { 596a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 597a30f8f8cSSatish Balay } else { 598a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 599f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 600a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 601a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 602a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 603a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 604a30f8f8cSSatish Balay /* 60556faa61eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 60656faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 607a30f8f8cSSatish Balay */ 608d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 609a30f8f8cSSatish Balay /* 61056faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 61156faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); */ 612a30f8f8cSSatish Balay 613a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 614a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 615a30f8f8cSSatish Balay } else { 61629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 617a30f8f8cSSatish Balay } 618a30f8f8cSSatish Balay } 619a30f8f8cSSatish Balay PetscFunctionReturn(0); 620a30f8f8cSSatish Balay } 621a30f8f8cSSatish Balay 622a30f8f8cSSatish Balay /* 623a30f8f8cSSatish Balay Creates the hash table, and sets the table 624a30f8f8cSSatish Balay This table is created only once. 625a30f8f8cSSatish Balay If new entried need to be added to the matrix 626a30f8f8cSSatish Balay then the hash table has to be destroyed and 627a30f8f8cSSatish Balay recreated. 628a30f8f8cSSatish Balay */ 6294a2ae208SSatish Balay #undef __FUNCT__ 6304a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 631a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 632a30f8f8cSSatish Balay { 633a30f8f8cSSatish Balay PetscFunctionBegin; 63429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 63596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 636a30f8f8cSSatish Balay } 637a30f8f8cSSatish Balay 6384a2ae208SSatish Balay #undef __FUNCT__ 6394a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 640a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 641a30f8f8cSSatish Balay { 642a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 643a30f8f8cSSatish Balay int ierr,nstash,reallocs; 644a30f8f8cSSatish Balay InsertMode addv; 645a30f8f8cSSatish Balay 646a30f8f8cSSatish Balay PetscFunctionBegin; 647a30f8f8cSSatish Balay if (baij->donotstash) { 648a30f8f8cSSatish Balay PetscFunctionReturn(0); 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 651a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 652a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 653a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 65429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 659a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 660a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 661b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 662a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 663b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 664a30f8f8cSSatish Balay PetscFunctionReturn(0); 665a30f8f8cSSatish Balay } 666a30f8f8cSSatish Balay 6674a2ae208SSatish Balay #undef __FUNCT__ 6684a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 669a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 670a30f8f8cSSatish Balay { 671a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 672a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 673a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 674a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 675a30f8f8cSSatish Balay int *row,*col,other_disassembled; 676a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 677a30f8f8cSSatish Balay MatScalar *val; 678a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 679a30f8f8cSSatish Balay 680a30f8f8cSSatish Balay PetscFunctionBegin; 681a30f8f8cSSatish Balay 682a30f8f8cSSatish Balay if (!baij->donotstash) { 683a30f8f8cSSatish Balay while (1) { 684a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 685a30f8f8cSSatish Balay /* 68656faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 68756faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); 688a30f8f8cSSatish Balay */ 689a30f8f8cSSatish Balay if (!flg) break; 690a30f8f8cSSatish Balay 691a30f8f8cSSatish Balay for (i=0; i<n;) { 692a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 693a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 694a30f8f8cSSatish Balay if (j < n) ncols = j-i; 695a30f8f8cSSatish Balay else ncols = n-i; 696a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 697a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 698a30f8f8cSSatish Balay i = j; 699a30f8f8cSSatish Balay } 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 702a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 703a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 704a30f8f8cSSatish Balay restore the original flags */ 705a30f8f8cSSatish Balay r1 = baij->roworiented; 706a30f8f8cSSatish Balay r2 = a->roworiented; 707a30f8f8cSSatish Balay r3 = b->roworiented; 708a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 709a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 710a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 711a30f8f8cSSatish Balay while (1) { 712a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 713a30f8f8cSSatish Balay if (!flg) break; 714a30f8f8cSSatish Balay 715a30f8f8cSSatish Balay for (i=0; i<n;) { 716a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 717a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 718a30f8f8cSSatish Balay if (j < n) ncols = j-i; 719a30f8f8cSSatish Balay else ncols = n-i; 720a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 721a30f8f8cSSatish Balay i = j; 722a30f8f8cSSatish Balay } 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 725a30f8f8cSSatish Balay baij->roworiented = r1; 726a30f8f8cSSatish Balay a->roworiented = r2; 727a30f8f8cSSatish Balay b->roworiented = r3; 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 731a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 732a30f8f8cSSatish Balay 733a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 734a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 735a30f8f8cSSatish Balay /* 736a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 737a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 738a30f8f8cSSatish Balay */ 739a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 740a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 741a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 742c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay 746a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 74740781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 748a30f8f8cSSatish Balay } 749a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 750a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 751a30f8f8cSSatish Balay 752a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 753a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 754f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 755a30f8f8cSSatish Balay baij->ht_total_ct = 0; 756a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 757a30f8f8cSSatish Balay } 758a30f8f8cSSatish Balay #endif 759a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 760c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 761a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 762a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 763a30f8f8cSSatish Balay } 764a30f8f8cSSatish Balay 765a30f8f8cSSatish Balay if (baij->rowvalues) { 766a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 767a30f8f8cSSatish Balay baij->rowvalues = 0; 768a30f8f8cSSatish Balay } 7695222a1afSHong Zhang 770a30f8f8cSSatish Balay PetscFunctionReturn(0); 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay 7734a2ae208SSatish Balay #undef __FUNCT__ 7744a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 775b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 776a30f8f8cSSatish Balay { 777a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 778fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 779a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 780b0a32e0cSBarry Smith PetscViewer sviewer; 781f3ef73ceSBarry Smith PetscViewerFormat format; 782a30f8f8cSSatish Balay 783a30f8f8cSSatish Balay PetscFunctionBegin; 784b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 785fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 786a30f8f8cSSatish Balay if (isascii) { 787b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 788456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 789a30f8f8cSSatish Balay MatInfo info; 790a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 791a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 792b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 793b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 794a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 795a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 796b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 797a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 798b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 799b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 800a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 801a30f8f8cSSatish Balay PetscFunctionReturn(0); 802fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 803b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 804a30f8f8cSSatish Balay PetscFunctionReturn(0); 805a30f8f8cSSatish Balay } 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay 808a30f8f8cSSatish Balay if (isdraw) { 809b0a32e0cSBarry Smith PetscDraw draw; 810a30f8f8cSSatish Balay PetscTruth isnull; 811b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 812b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 813a30f8f8cSSatish Balay } 814a30f8f8cSSatish Balay 815a30f8f8cSSatish Balay if (size == 1) { 816e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 817a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 818a30f8f8cSSatish Balay } else { 819a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 820a30f8f8cSSatish Balay Mat A; 82165d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 82265d70643SHong Zhang Mat_SeqBAIJ *Bloc; 823b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 824a30f8f8cSSatish Balay MatScalar *a; 825a30f8f8cSSatish Balay 826f204ca49SKris Buschelman /* Should this be the same type as mat? */ 827a30f8f8cSSatish Balay if (!rank) { 828f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 829a30f8f8cSSatish Balay } else { 830f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 831a30f8f8cSSatish Balay } 832f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 833f204ca49SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,baij->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 834b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 835a30f8f8cSSatish Balay 836a30f8f8cSSatish Balay /* copy over the A part */ 83765d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 838a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 83982502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 840a30f8f8cSSatish Balay 841a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 842a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 843a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 844a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 845a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 846a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 847a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 848a30f8f8cSSatish Balay col++; a += bs; 849a30f8f8cSSatish Balay } 850a30f8f8cSSatish Balay } 851a30f8f8cSSatish Balay } 852a30f8f8cSSatish Balay /* copy over the B part */ 85365d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 85465d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 855a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 856a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 857a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 858a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 859a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 860a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 861a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 862a30f8f8cSSatish Balay col++; a += bs; 863a30f8f8cSSatish Balay } 864a30f8f8cSSatish Balay } 865a30f8f8cSSatish Balay } 866a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 867a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 868a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 869a30f8f8cSSatish Balay /* 870a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 871b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 872a30f8f8cSSatish Balay */ 873b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 87465d70643SHong Zhang if (!rank) { 875e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 876a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 877a30f8f8cSSatish Balay } 878b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 879a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 880a30f8f8cSSatish Balay } 881a30f8f8cSSatish Balay PetscFunctionReturn(0); 882a30f8f8cSSatish Balay } 883a30f8f8cSSatish Balay 8844a2ae208SSatish Balay #undef __FUNCT__ 8854a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 886b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 887a30f8f8cSSatish Balay { 888a30f8f8cSSatish Balay int ierr; 889a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 890a30f8f8cSSatish Balay 891a30f8f8cSSatish Balay PetscFunctionBegin; 892b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 893fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 894b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 895fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 896a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 897a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 898a30f8f8cSSatish Balay } else { 89929bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay PetscFunctionReturn(0); 902a30f8f8cSSatish Balay } 903a30f8f8cSSatish Balay 9044a2ae208SSatish Balay #undef __FUNCT__ 9054a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 906a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 907a30f8f8cSSatish Balay { 908a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 909a30f8f8cSSatish Balay int ierr; 910a30f8f8cSSatish Balay 911a30f8f8cSSatish Balay PetscFunctionBegin; 912a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 913b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 914a30f8f8cSSatish Balay #endif 915a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 916a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 917a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 918a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 919a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 920a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 921a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 922a30f8f8cSSatish Balay #else 923a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 924a30f8f8cSSatish Balay #endif 925a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 926a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 927a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 92840781036SHong Zhang if (baij->slvec0) { 92940781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 93040781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 93140781036SHong Zhang } 93240781036SHong Zhang if (baij->slvec1) { 93340781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 93440781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 93540781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 93640781036SHong Zhang } 93740781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 938a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 939a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 940a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 941a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 942a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 943a30f8f8cSSatish Balay #endif 944a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 945a30f8f8cSSatish Balay PetscFunctionReturn(0); 946a30f8f8cSSatish Balay } 947a30f8f8cSSatish Balay 9484a2ae208SSatish Balay #undef __FUNCT__ 949a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 950a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 951a9d4b620SHong Zhang { 952a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 9534024bf32SHong Zhang int ierr,nt,mbs=a->mbs,bs=a->bs; 954a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 955a9d4b620SHong Zhang 956a9d4b620SHong Zhang PetscFunctionBegin; 957a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 958a9d4b620SHong Zhang if (nt != A->n) { 959a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 960a9d4b620SHong Zhang } 961a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 962a9d4b620SHong Zhang if (nt != A->m) { 963a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 964a9d4b620SHong Zhang } 965a9d4b620SHong Zhang 966a9d4b620SHong Zhang /* diagonal part */ 967a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 968a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 969a9d4b620SHong Zhang 970a9d4b620SHong Zhang /* subdiagonal part */ 971a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 972a9d4b620SHong Zhang 973a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9741ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9751ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 976a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9771ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 978a9d4b620SHong Zhang 979a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9801ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 981a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 982a9d4b620SHong Zhang 983a9d4b620SHong Zhang /* supperdiagonal part */ 984a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 985a9d4b620SHong Zhang 986a9d4b620SHong Zhang PetscFunctionReturn(0); 987a9d4b620SHong Zhang } 988a9d4b620SHong Zhang 989a9d4b620SHong Zhang #undef __FUNCT__ 99040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 99140781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 992a30f8f8cSSatish Balay { 993a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 994a30f8f8cSSatish Balay int ierr,nt; 995a30f8f8cSSatish Balay 996a30f8f8cSSatish Balay PetscFunctionBegin; 997a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 998b5df2d14SHong Zhang if (nt != A->n) { 99929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1000a30f8f8cSSatish Balay } 1001a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1002b5df2d14SHong Zhang if (nt != A->m) { 100329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1004a30f8f8cSSatish Balay } 100565d70643SHong Zhang 1006b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1007b941877fSHong Zhang /* do diagonal part */ 1008b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1009b941877fSHong Zhang /* do supperdiagonal part */ 1010b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1011b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1012b941877fSHong Zhang /* do subdiagonal part */ 1013b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1014b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1015b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 101665d70643SHong Zhang 1017a30f8f8cSSatish Balay PetscFunctionReturn(0); 1018a30f8f8cSSatish Balay } 1019a30f8f8cSSatish Balay 10204a2ae208SSatish Balay #undef __FUNCT__ 10214a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1022a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1023a30f8f8cSSatish Balay { 1024de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1025a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 1026a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1027a9d4b620SHong Zhang 1028a9d4b620SHong Zhang PetscFunctionBegin; 1029a9d4b620SHong Zhang /* 103056faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 103156faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1032a9d4b620SHong Zhang */ 1033a9d4b620SHong Zhang /* diagonal part */ 1034a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1035a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1036a9d4b620SHong Zhang 1037a9d4b620SHong Zhang /* subdiagonal part */ 1038a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1039a9d4b620SHong Zhang 1040a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10411ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10421ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1043a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 10441ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1045a9d4b620SHong Zhang 1046a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 10471ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1048a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1049a9d4b620SHong Zhang 1050a9d4b620SHong Zhang /* supperdiagonal part */ 1051a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1052a9d4b620SHong Zhang 1053a9d4b620SHong Zhang PetscFunctionReturn(0); 1054a9d4b620SHong Zhang } 1055a9d4b620SHong Zhang 1056a9d4b620SHong Zhang #undef __FUNCT__ 1057a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1058a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1059a9d4b620SHong Zhang { 1060a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1061aa482183SHong Zhang int ierr; 1062a30f8f8cSSatish Balay 1063a30f8f8cSSatish Balay PetscFunctionBegin; 1064b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1065b941877fSHong Zhang /* do diagonal part */ 1066b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1067b941877fSHong Zhang /* do supperdiagonal part */ 1068b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1069de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1070de8b6608SHong Zhang 1071b941877fSHong Zhang /* do subdiagonal part */ 1072a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1073a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1074a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1075aa482183SHong Zhang 1076a30f8f8cSSatish Balay PetscFunctionReturn(0); 1077a30f8f8cSSatish Balay } 1078a30f8f8cSSatish Balay 10794a2ae208SSatish Balay #undef __FUNCT__ 10804a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1081a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1082a30f8f8cSSatish Balay { 10835a7c0312SHong Zhang int ierr; 10845a7c0312SHong Zhang 1085a30f8f8cSSatish Balay PetscFunctionBegin; 10865a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10875a7c0312SHong Zhang PetscFunctionReturn(0); 1088a30f8f8cSSatish Balay } 1089a30f8f8cSSatish Balay 10904a2ae208SSatish Balay #undef __FUNCT__ 10914a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1092a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1093a30f8f8cSSatish Balay { 10945a7c0312SHong Zhang int ierr; 10955a7c0312SHong Zhang 1096a30f8f8cSSatish Balay PetscFunctionBegin; 10975a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 10985a7c0312SHong Zhang PetscFunctionReturn(0); 1099a30f8f8cSSatish Balay } 1100a30f8f8cSSatish Balay 1101a30f8f8cSSatish Balay /* 1102a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1103a30f8f8cSSatish Balay diagonal block 1104a30f8f8cSSatish Balay */ 11054a2ae208SSatish Balay #undef __FUNCT__ 11064a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1107a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1108a30f8f8cSSatish Balay { 1109a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1110a30f8f8cSSatish Balay int ierr; 1111a30f8f8cSSatish Balay 1112a30f8f8cSSatish Balay PetscFunctionBegin; 111329bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1114a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1115a30f8f8cSSatish Balay PetscFunctionReturn(0); 1116a30f8f8cSSatish Balay } 1117a30f8f8cSSatish Balay 11184a2ae208SSatish Balay #undef __FUNCT__ 11194a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1120268466fbSBarry Smith int MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1121a30f8f8cSSatish Balay { 1122a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1123a30f8f8cSSatish Balay int ierr; 1124a30f8f8cSSatish Balay 1125a30f8f8cSSatish Balay PetscFunctionBegin; 1126a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1127a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1128a30f8f8cSSatish Balay PetscFunctionReturn(0); 1129a30f8f8cSSatish Balay } 1130a30f8f8cSSatish Balay 11314a2ae208SSatish Balay #undef __FUNCT__ 11324a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 113387828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1134a30f8f8cSSatish Balay { 1135a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 113687828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1137a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1138a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1139a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1140a30f8f8cSSatish Balay 1141a30f8f8cSSatish Balay PetscFunctionBegin; 114229bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1143a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1144a30f8f8cSSatish Balay 1145a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1146a30f8f8cSSatish Balay /* 1147a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1148a30f8f8cSSatish Balay */ 1149a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1150a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1151a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1152a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1153a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1154a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1155a30f8f8cSSatish Balay } 115687828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1157a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1158a30f8f8cSSatish Balay } 1159a30f8f8cSSatish Balay 116029bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1161a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1162a30f8f8cSSatish Balay 1163a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1164a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1165a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1166a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1167a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1168a30f8f8cSSatish Balay nztot = nzA + nzB; 1169a30f8f8cSSatish Balay 1170a30f8f8cSSatish Balay cmap = mat->garray; 1171a30f8f8cSSatish Balay if (v || idx) { 1172a30f8f8cSSatish Balay if (nztot) { 1173a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1174a30f8f8cSSatish Balay int imark = -1; 1175a30f8f8cSSatish Balay if (v) { 1176a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1177a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1178a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1179a30f8f8cSSatish Balay else break; 1180a30f8f8cSSatish Balay } 1181a30f8f8cSSatish Balay imark = i; 1182a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1183a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1184a30f8f8cSSatish Balay } 1185a30f8f8cSSatish Balay if (idx) { 1186a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1187a30f8f8cSSatish Balay if (imark > -1) { 1188a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1189a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1190a30f8f8cSSatish Balay } 1191a30f8f8cSSatish Balay } else { 1192a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1193a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1194a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1195a30f8f8cSSatish Balay else break; 1196a30f8f8cSSatish Balay } 1197a30f8f8cSSatish Balay imark = i; 1198a30f8f8cSSatish Balay } 1199a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1200a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1201a30f8f8cSSatish Balay } 1202a30f8f8cSSatish Balay } else { 1203a30f8f8cSSatish Balay if (idx) *idx = 0; 1204a30f8f8cSSatish Balay if (v) *v = 0; 1205a30f8f8cSSatish Balay } 1206a30f8f8cSSatish Balay } 1207a30f8f8cSSatish Balay *nz = nztot; 1208a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1209a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1210a30f8f8cSSatish Balay PetscFunctionReturn(0); 1211a30f8f8cSSatish Balay } 1212a30f8f8cSSatish Balay 12134a2ae208SSatish Balay #undef __FUNCT__ 12144a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 121587828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1216a30f8f8cSSatish Balay { 1217a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1218a30f8f8cSSatish Balay 1219a30f8f8cSSatish Balay PetscFunctionBegin; 1220a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 122129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1222a30f8f8cSSatish Balay } 1223a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1224a30f8f8cSSatish Balay PetscFunctionReturn(0); 1225a30f8f8cSSatish Balay } 1226a30f8f8cSSatish Balay 12274a2ae208SSatish Balay #undef __FUNCT__ 12284a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1229a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1230a30f8f8cSSatish Balay { 1231a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1232a30f8f8cSSatish Balay 1233a30f8f8cSSatish Balay PetscFunctionBegin; 1234a30f8f8cSSatish Balay *bs = baij->bs; 1235a30f8f8cSSatish Balay PetscFunctionReturn(0); 1236a30f8f8cSSatish Balay } 1237a30f8f8cSSatish Balay 12384a2ae208SSatish Balay #undef __FUNCT__ 12394a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1240a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1241a30f8f8cSSatish Balay { 1242a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1243a30f8f8cSSatish Balay int ierr; 1244a30f8f8cSSatish Balay 1245a30f8f8cSSatish Balay PetscFunctionBegin; 1246a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1247a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1248a30f8f8cSSatish Balay PetscFunctionReturn(0); 1249a30f8f8cSSatish Balay } 1250a30f8f8cSSatish Balay 12514a2ae208SSatish Balay #undef __FUNCT__ 12524a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1253a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1254a30f8f8cSSatish Balay { 1255a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1256a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1257a30f8f8cSSatish Balay int ierr; 1258a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1259a30f8f8cSSatish Balay 1260a30f8f8cSSatish Balay PetscFunctionBegin; 1261f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1262a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1263a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1264a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1265a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1266a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1267a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1268a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1269a30f8f8cSSatish Balay info->nz_used = isend[0]; 1270a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1271a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1272a30f8f8cSSatish Balay info->memory = isend[3]; 1273a30f8f8cSSatish Balay info->mallocs = isend[4]; 1274a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1275d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1276a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1277a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1278a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1279a30f8f8cSSatish Balay info->memory = irecv[3]; 1280a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1281a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1282d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1283a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1284a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1285a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1286a30f8f8cSSatish Balay info->memory = irecv[3]; 1287a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1288a30f8f8cSSatish Balay } else { 128929bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1290a30f8f8cSSatish Balay } 1291f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1292f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1293f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1294f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1295a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1296a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1297a30f8f8cSSatish Balay info->factor_mallocs = 0; 1298a30f8f8cSSatish Balay PetscFunctionReturn(0); 1299a30f8f8cSSatish Balay } 1300a30f8f8cSSatish Balay 13014a2ae208SSatish Balay #undef __FUNCT__ 13024a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1303a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1304a30f8f8cSSatish Balay { 1305a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1306a30f8f8cSSatish Balay int ierr; 1307a30f8f8cSSatish Balay 1308a30f8f8cSSatish Balay PetscFunctionBegin; 1309e98b92d7SKris Buschelman switch (op) { 1310e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1311e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1312e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1313e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1314e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1315e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1316e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1317a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1318a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1319e98b92d7SKris Buschelman break; 1320e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1321a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1322a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1323a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1324e98b92d7SKris Buschelman break; 1325e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1326e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1327e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1328b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1329e98b92d7SKris Buschelman break; 1330e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1331a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1332a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1333a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1334e98b92d7SKris Buschelman break; 1335e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1336a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1337e98b92d7SKris Buschelman break; 1338e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 133929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1340e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1341a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1342e98b92d7SKris Buschelman break; 13439a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 13449a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 13459a4540c5SBarry Smith case MAT_HERMITIAN: 13469a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 134777e54ba9SKris Buschelman case MAT_SYMMETRIC: 134877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13499a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 13509a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 13519a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 135277e54ba9SKris Buschelman break; 1353e98b92d7SKris Buschelman default: 135429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1355a30f8f8cSSatish Balay } 1356a30f8f8cSSatish Balay PetscFunctionReturn(0); 1357a30f8f8cSSatish Balay } 1358a30f8f8cSSatish Balay 13594a2ae208SSatish Balay #undef __FUNCT__ 13608115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 13618115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B) 1362a30f8f8cSSatish Balay { 13638115998fSBarry Smith int ierr; 1364a30f8f8cSSatish Balay PetscFunctionBegin; 1365999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13668115998fSBarry Smith PetscFunctionReturn(0); 1367a30f8f8cSSatish Balay } 1368a30f8f8cSSatish Balay 13694a2ae208SSatish Balay #undef __FUNCT__ 13704a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1371a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1372a30f8f8cSSatish Balay { 1373a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1374a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1375a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1376a30f8f8cSSatish Balay 1377a30f8f8cSSatish Balay PetscFunctionBegin; 1378a30f8f8cSSatish Balay if (ll != rr) { 137929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1380a30f8f8cSSatish Balay } 1381a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1382a30f8f8cSSatish Balay if (rr) { 1383a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 138429bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1385a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1386a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1387a30f8f8cSSatish Balay /*} if (ll) { */ 1388a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 138929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1390a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1391a30f8f8cSSatish Balay /* } */ 1392a30f8f8cSSatish Balay /* scale the diagonal block */ 1393a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1394a30f8f8cSSatish Balay 1395a30f8f8cSSatish Balay /* if (rr) { */ 1396a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1397a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1398a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1399a30f8f8cSSatish Balay } 1400a30f8f8cSSatish Balay 1401a30f8f8cSSatish Balay PetscFunctionReturn(0); 1402a30f8f8cSSatish Balay } 1403a30f8f8cSSatish Balay 14044a2ae208SSatish Balay #undef __FUNCT__ 14054a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1406268466fbSBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1407a30f8f8cSSatish Balay { 1408a30f8f8cSSatish Balay PetscFunctionBegin; 1409c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1410a30f8f8cSSatish Balay } 1411a30f8f8cSSatish Balay 14124a2ae208SSatish Balay #undef __FUNCT__ 14134a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1414a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1415a30f8f8cSSatish Balay { 1416a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1417a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1418a30f8f8cSSatish Balay static int called = 0; 1419a30f8f8cSSatish Balay int ierr; 1420a30f8f8cSSatish Balay 1421a30f8f8cSSatish Balay PetscFunctionBegin; 1422a30f8f8cSSatish Balay if (!a->rank) { 1423a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1424a30f8f8cSSatish Balay } 1425a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1426a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1427a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1428a30f8f8cSSatish Balay PetscFunctionReturn(0); 1429a30f8f8cSSatish Balay } 1430a30f8f8cSSatish Balay 14314a2ae208SSatish Balay #undef __FUNCT__ 14324a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1433a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1434a30f8f8cSSatish Balay { 1435f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1436a30f8f8cSSatish Balay int ierr; 1437a30f8f8cSSatish Balay 1438a30f8f8cSSatish Balay PetscFunctionBegin; 1439a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1440a30f8f8cSSatish Balay PetscFunctionReturn(0); 1441a30f8f8cSSatish Balay } 1442a30f8f8cSSatish Balay 1443a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1444a30f8f8cSSatish Balay 14454a2ae208SSatish Balay #undef __FUNCT__ 14464a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1447a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1448a30f8f8cSSatish Balay { 1449a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1450a30f8f8cSSatish Balay Mat a,b,c,d; 1451a30f8f8cSSatish Balay PetscTruth flg; 1452a30f8f8cSSatish Balay int ierr; 1453a30f8f8cSSatish Balay 1454a30f8f8cSSatish Balay PetscFunctionBegin; 1455a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1456a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1457a30f8f8cSSatish Balay 1458a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1459a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1460a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1461a30f8f8cSSatish Balay } 1462a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1463a30f8f8cSSatish Balay PetscFunctionReturn(0); 1464a30f8f8cSSatish Balay } 1465a30f8f8cSSatish Balay 14664a2ae208SSatish Balay #undef __FUNCT__ 14674a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1468273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1469273d9f13SBarry Smith { 1470273d9f13SBarry Smith int ierr; 1471273d9f13SBarry Smith 1472273d9f13SBarry Smith PetscFunctionBegin; 1473273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1474273d9f13SBarry Smith PetscFunctionReturn(0); 1475273d9f13SBarry Smith } 1476a5e6ed63SBarry Smith 1477a5e6ed63SBarry Smith #undef __FUNCT__ 1478a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 1479a5e6ed63SBarry Smith int MatGetSubMatrices_MPISBAIJ(Mat A,int n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1480a5e6ed63SBarry Smith { 1481a5e6ed63SBarry Smith int i,ierr; 1482a5e6ed63SBarry Smith PetscTruth flg; 1483a5e6ed63SBarry Smith 1484a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1485a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1486a5e6ed63SBarry Smith if (!flg) { 1487a5e6ed63SBarry Smith SETERRQ(1,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1488a5e6ed63SBarry Smith } 1489a5e6ed63SBarry Smith } 1490a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1491a5e6ed63SBarry Smith PetscFunctionReturn(0); 1492a5e6ed63SBarry Smith } 1493a5e6ed63SBarry Smith 1494a5e6ed63SBarry Smith 1495a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1496a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1497a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1498a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1499a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1500a9d4b620SHong Zhang MatMult_MPISBAIJ, 150197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1502a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1503a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 150797304618SKris Buschelman /*10*/ 0, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay 0, 15102798e883SHong Zhang MatRelax_MPISBAIJ, 1511a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 151297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1513a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1514a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1515a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1516a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 151797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1518a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1519a30f8f8cSSatish Balay 0, 1520a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1521a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 152297304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 152797304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1528b5df2d14SHong Zhang 0, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay 0, 153297304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1533a30f8f8cSSatish Balay 0, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay 0, 1536a30f8f8cSSatish Balay 0, 153797304618SKris Buschelman /*40*/ 0, 1538a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1539d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1540a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1541a30f8f8cSSatish Balay 0, 154297304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1543a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 1546a30f8f8cSSatish Balay 0, 154797304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ, 1548a30f8f8cSSatish Balay 0, 1549a30f8f8cSSatish Balay 0, 1550a30f8f8cSSatish Balay 0, 1551a30f8f8cSSatish Balay 0, 155297304618SKris Buschelman /*55*/ 0, 1553a30f8f8cSSatish Balay 0, 1554a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1555a30f8f8cSSatish Balay 0, 1556a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 155797304618SKris Buschelman /*60*/ 0, 1558a30f8f8cSSatish Balay 0, 1559a30f8f8cSSatish Balay 0, 15608a124369SBarry Smith MatGetPetscMaps_Petsc, 156124d5174aSHong Zhang 0, 156297304618SKris Buschelman /*65*/ 0, 156324d5174aSHong Zhang 0, 156424d5174aSHong Zhang 0, 156524d5174aSHong Zhang 0, 156624d5174aSHong Zhang 0, 156797304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 156824d5174aSHong Zhang 0, 156997304618SKris Buschelman 0, 157097304618SKris Buschelman 0, 157197304618SKris Buschelman 0, 157297304618SKris Buschelman /*75*/ 0, 157397304618SKris Buschelman 0, 157497304618SKris Buschelman 0, 157597304618SKris Buschelman 0, 157697304618SKris Buschelman 0, 157797304618SKris Buschelman /*80*/ 0, 157897304618SKris Buschelman 0, 157997304618SKris Buschelman 0, 158097304618SKris Buschelman 0, 158197304618SKris Buschelman /*85*/ MatLoad_MPISBAIJ 158297304618SKris Buschelman }; 1583a30f8f8cSSatish Balay 1584a30f8f8cSSatish Balay 1585a30f8f8cSSatish Balay EXTERN_C_BEGIN 15864a2ae208SSatish Balay #undef __FUNCT__ 15874a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1588a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1589a30f8f8cSSatish Balay { 1590a30f8f8cSSatish Balay PetscFunctionBegin; 1591a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1592a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1593a30f8f8cSSatish Balay PetscFunctionReturn(0); 1594a30f8f8cSSatish Balay } 1595a30f8f8cSSatish Balay EXTERN_C_END 1596a30f8f8cSSatish Balay 1597273d9f13SBarry Smith EXTERN_C_BEGIN 15984a2ae208SSatish Balay #undef __FUNCT__ 1599a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1600a23d5eceSKris Buschelman int MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1601a23d5eceSKris Buschelman { 1602a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1603a23d5eceSKris Buschelman int ierr,i,mbs,Mbs; 1604a23d5eceSKris Buschelman 1605a23d5eceSKris Buschelman PetscFunctionBegin; 1606a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1607a23d5eceSKris Buschelman 1608a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1609a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1610a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1611a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1612a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1613a23d5eceSKris Buschelman if (d_nnz) { 1614a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1615a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1616a23d5eceSKris Buschelman } 1617a23d5eceSKris Buschelman } 1618a23d5eceSKris Buschelman if (o_nnz) { 1619a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1620a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1621a23d5eceSKris Buschelman } 1622a23d5eceSKris Buschelman } 1623a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1624a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1625a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1626a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1627a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1628a23d5eceSKris Buschelman 1629a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1630a23d5eceSKris Buschelman mbs = B->m/bs; 1631a23d5eceSKris Buschelman Mbs = B->M/bs; 1632a23d5eceSKris Buschelman if (mbs*bs != B->m) { 1633a23d5eceSKris Buschelman SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1634a23d5eceSKris Buschelman } 1635a23d5eceSKris Buschelman 1636a23d5eceSKris Buschelman b->bs = bs; 1637a23d5eceSKris Buschelman b->bs2 = bs*bs; 1638a23d5eceSKris Buschelman b->mbs = mbs; 1639a23d5eceSKris Buschelman b->nbs = mbs; 1640a23d5eceSKris Buschelman b->Mbs = Mbs; 1641a23d5eceSKris Buschelman b->Nbs = Mbs; 1642a23d5eceSKris Buschelman 1643a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1644a23d5eceSKris Buschelman b->rowners[0] = 0; 1645a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1646a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1647a23d5eceSKris Buschelman } 1648a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1649a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1650a23d5eceSKris Buschelman b->cstart = b->rstart; 1651a23d5eceSKris Buschelman b->cend = b->rend; 1652a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1653a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1654a23d5eceSKris Buschelman } 1655a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1656a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1657a23d5eceSKris Buschelman 1658a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1659a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1660a23d5eceSKris Buschelman 16619c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 16629c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1663c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 16649c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 16659c097c71SKris Buschelman 16669c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 16674aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1668589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 16699c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 1670a23d5eceSKris Buschelman 1671a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1672a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1673a23d5eceSKris Buschelman 1674a23d5eceSKris Buschelman PetscFunctionReturn(0); 1675a23d5eceSKris Buschelman } 1676a23d5eceSKris Buschelman EXTERN_C_END 1677a23d5eceSKris Buschelman 16780bad9183SKris Buschelman /*MC 1679fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16800bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16810bad9183SKris Buschelman 16820bad9183SKris Buschelman Options Database Keys: 16830bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16840bad9183SKris Buschelman 16850bad9183SKris Buschelman Level: beginner 16860bad9183SKris Buschelman 16870bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16880bad9183SKris Buschelman M*/ 16890bad9183SKris Buschelman 1690a23d5eceSKris Buschelman EXTERN_C_BEGIN 1691a23d5eceSKris Buschelman #undef __FUNCT__ 16924a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1693b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1694b5df2d14SHong Zhang { 1695b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1696ca54ac64SHong Zhang int ierr; 1697b5df2d14SHong Zhang PetscTruth flg; 1698b5df2d14SHong Zhang 1699b5df2d14SHong Zhang PetscFunctionBegin; 1700b5df2d14SHong Zhang 1701b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1702b0a32e0cSBarry Smith B->data = (void*)b; 1703b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1704b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1705b5df2d14SHong Zhang 1706b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1707b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1708b5df2d14SHong Zhang B->mapping = 0; 1709b5df2d14SHong Zhang B->factor = 0; 1710b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1711b5df2d14SHong Zhang 1712b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1713b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1714b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1715b5df2d14SHong Zhang 1716b5df2d14SHong Zhang /* build local table of row and column ownerships */ 171782502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1718273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1719273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1720b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1721b5df2d14SHong Zhang 1722b5df2d14SHong Zhang /* build cache for off array entries formed */ 1723b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1724b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1725b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1726b5df2d14SHong Zhang b->garray = PETSC_NULL; 1727b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1728b5df2d14SHong Zhang 1729f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1730b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 173164a35ccbSBarry Smith b->setvalueslen = 0; 1732b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1733b5df2d14SHong Zhang #endif 1734b5df2d14SHong Zhang 1735b5df2d14SHong Zhang /* stuff used in block assembly */ 1736b5df2d14SHong Zhang b->barray = 0; 1737b5df2d14SHong Zhang 1738b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1739b5df2d14SHong Zhang b->lvec = 0; 1740b5df2d14SHong Zhang b->Mvctx = 0; 174140781036SHong Zhang b->slvec0 = 0; 174240781036SHong Zhang b->slvec0b = 0; 174340781036SHong Zhang b->slvec1 = 0; 174440781036SHong Zhang b->slvec1a = 0; 174540781036SHong Zhang b->slvec1b = 0; 174640781036SHong Zhang b->sMvctx = 0; 1747b5df2d14SHong Zhang 1748b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1749b5df2d14SHong Zhang b->rowindices = 0; 1750b5df2d14SHong Zhang b->rowvalues = 0; 1751b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1752b5df2d14SHong Zhang 1753b5df2d14SHong Zhang /* hash table stuff */ 1754b5df2d14SHong Zhang b->ht = 0; 1755b5df2d14SHong Zhang b->hd = 0; 1756b5df2d14SHong Zhang b->ht_size = 0; 1757b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1758b5df2d14SHong Zhang b->ht_fact = 0; 1759b5df2d14SHong Zhang b->ht_total_ct = 0; 1760b5df2d14SHong Zhang b->ht_insert_ct = 0; 1761b5df2d14SHong Zhang 1762e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1763b5df2d14SHong Zhang if (flg) { 1764f6275e2eSBarry Smith PetscReal fact = 1.39; 1765b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1766e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1767b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1768b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1769b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1770b5df2d14SHong Zhang } 1771b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1772b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1773b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1774b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1775b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1776b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1777b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1778b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1779b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1780a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1781a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1782a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 178323ce1328SBarry Smith B->symmetric = PETSC_TRUE; 178423ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 178523ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 178623ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1787b5df2d14SHong Zhang PetscFunctionReturn(0); 1788b5df2d14SHong Zhang } 1789273d9f13SBarry Smith EXTERN_C_END 1790b5df2d14SHong Zhang 1791209238afSKris Buschelman /*MC 1792002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1793209238afSKris Buschelman 1794209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1795209238afSKris Buschelman and MATMPISBAIJ otherwise. 1796209238afSKris Buschelman 1797209238afSKris Buschelman Options Database Keys: 1798209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1799209238afSKris Buschelman 1800209238afSKris Buschelman Level: beginner 1801209238afSKris Buschelman 1802209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1803209238afSKris Buschelman M*/ 1804209238afSKris Buschelman 1805209238afSKris Buschelman EXTERN_C_BEGIN 1806209238afSKris Buschelman #undef __FUNCT__ 1807209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1808209238afSKris Buschelman int MatCreate_SBAIJ(Mat A) { 1809209238afSKris Buschelman int ierr,size; 1810209238afSKris Buschelman 1811209238afSKris Buschelman PetscFunctionBegin; 1812209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1813209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1814209238afSKris Buschelman if (size == 1) { 1815209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1816209238afSKris Buschelman } else { 1817209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1818209238afSKris Buschelman } 1819209238afSKris Buschelman PetscFunctionReturn(0); 1820209238afSKris Buschelman } 1821209238afSKris Buschelman EXTERN_C_END 1822209238afSKris Buschelman 18234a2ae208SSatish Balay #undef __FUNCT__ 18244a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1825b5df2d14SHong Zhang /*@C 1826b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1827b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1828b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1829b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1830b5df2d14SHong Zhang 1831b5df2d14SHong Zhang Collective on Mat 1832b5df2d14SHong Zhang 1833b5df2d14SHong Zhang Input Parameters: 1834b5df2d14SHong Zhang + A - the matrix 1835b5df2d14SHong Zhang . bs - size of blockk 1836b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1837b5df2d14SHong Zhang submatrix (same for all local rows) 1838b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18396d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18406d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18416d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1842b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1843b5df2d14SHong Zhang submatrix (same for all local rows). 1844b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1845b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1846b5df2d14SHong Zhang each block row) or PETSC_NULL. 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang 1849b5df2d14SHong Zhang Options Database Keys: 1850b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1851b5df2d14SHong Zhang block calculations (much slower) 1852b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1853b5df2d14SHong Zhang 1854b5df2d14SHong Zhang Notes: 1855b5df2d14SHong Zhang 1856b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1857b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1858b5df2d14SHong Zhang 1859b5df2d14SHong Zhang Storage Information: 1860b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1861b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1862b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1863b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1864b5df2d14SHong Zhang 1865b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1866b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1867b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1868b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1869b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1870b5df2d14SHong Zhang 1871b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1872b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1873b5df2d14SHong Zhang 1874b5df2d14SHong Zhang .vb 1875b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1876b5df2d14SHong Zhang ------------------- 1877b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1878b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1879b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1880b5df2d14SHong Zhang ------------------- 1881b5df2d14SHong Zhang .ve 1882b5df2d14SHong Zhang 1883b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1884b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18856d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18866d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1887b5df2d14SHong Zhang 18886d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18896d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1890b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1891b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1892b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1893b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1894b5df2d14SHong Zhang matrices. 1895b5df2d14SHong Zhang 1896b5df2d14SHong Zhang Level: intermediate 1897b5df2d14SHong Zhang 1898b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1899b5df2d14SHong Zhang 1900b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1901b5df2d14SHong Zhang @*/ 1902ca01db9bSBarry Smith int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[]) 1903b5df2d14SHong Zhang { 1904ca01db9bSBarry Smith int ierr,(*f)(Mat,int,int,const int[],int,const int[]); 1905b5df2d14SHong Zhang 1906b5df2d14SHong Zhang PetscFunctionBegin; 1907a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1908a23d5eceSKris Buschelman if (f) { 1909a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1910b5df2d14SHong Zhang } 1911b5df2d14SHong Zhang PetscFunctionReturn(0); 1912b5df2d14SHong Zhang } 1913b5df2d14SHong Zhang 19144a2ae208SSatish Balay #undef __FUNCT__ 19154a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1916a30f8f8cSSatish Balay /*@C 1917a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1918a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1919a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1920a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1921a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1922a30f8f8cSSatish Balay 1923a30f8f8cSSatish Balay Collective on MPI_Comm 1924a30f8f8cSSatish Balay 1925a30f8f8cSSatish Balay Input Parameters: 1926a30f8f8cSSatish Balay + comm - MPI communicator 1927a30f8f8cSSatish Balay . bs - size of blockk 1928a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1929a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1930a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1931a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1932a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1933a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1934a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1935a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1936a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1937a30f8f8cSSatish Balay submatrix (same for all local rows) 1938a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19396d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19406d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19416d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1942a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1943a30f8f8cSSatish Balay submatrix (same for all local rows). 1944a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1945a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1946a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1947a30f8f8cSSatish Balay 1948a30f8f8cSSatish Balay Output Parameter: 1949a30f8f8cSSatish Balay . A - the matrix 1950a30f8f8cSSatish Balay 1951a30f8f8cSSatish Balay Options Database Keys: 1952a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1953a30f8f8cSSatish Balay block calculations (much slower) 1954a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1955a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1956a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1957a30f8f8cSSatish Balay 1958a30f8f8cSSatish Balay Notes: 1959a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1960a30f8f8cSSatish Balay (possibly both). 1961a30f8f8cSSatish Balay 1962a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1963a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1964a30f8f8cSSatish Balay 1965a30f8f8cSSatish Balay Storage Information: 1966a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1967a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1968a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1969a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1970a30f8f8cSSatish Balay 1971a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1972a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1973a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1974a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1975a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1978a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1979a30f8f8cSSatish Balay 1980a30f8f8cSSatish Balay .vb 1981a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1982a30f8f8cSSatish Balay ------------------- 1983a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1984a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1985a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1986a30f8f8cSSatish Balay ------------------- 1987a30f8f8cSSatish Balay .ve 1988a30f8f8cSSatish Balay 1989a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1990a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19916d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19926d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1993a30f8f8cSSatish Balay 19946d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19956d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1996a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1997a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1998a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1999a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2000a30f8f8cSSatish Balay matrices. 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay Level: intermediate 2003a30f8f8cSSatish Balay 2004a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2005a30f8f8cSSatish Balay 2006a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2007a30f8f8cSSatish Balay @*/ 2008a30f8f8cSSatish Balay 2009ca01db9bSBarry Smith int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A) 2010a30f8f8cSSatish Balay { 2011273d9f13SBarry Smith int ierr,size; 2012a30f8f8cSSatish Balay 2013a30f8f8cSSatish Balay PetscFunctionBegin; 2014b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2015273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2016273d9f13SBarry Smith if (size > 1) { 2017b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2018b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2019273d9f13SBarry Smith } else { 2020273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2021273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2022273d9f13SBarry Smith } 2023a30f8f8cSSatish Balay PetscFunctionReturn(0); 2024a30f8f8cSSatish Balay } 2025a30f8f8cSSatish Balay 2026a30f8f8cSSatish Balay 20274a2ae208SSatish Balay #undef __FUNCT__ 20284a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 2029a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2030a30f8f8cSSatish Balay { 2031a30f8f8cSSatish Balay Mat mat; 2032a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2033387bc808SHong Zhang int ierr,len=0,nt,bs=oldmat->bs,mbs=oldmat->mbs; 2034387bc808SHong Zhang PetscScalar *array; 2035a30f8f8cSSatish Balay 2036a30f8f8cSSatish Balay PetscFunctionBegin; 2037a30f8f8cSSatish Balay *newmat = 0; 2038b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2039be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 2040*1d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2041e1b6402fSHong Zhang 204282327fa8SHong Zhang mat->factor = matin->factor; 2043273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 204482327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20457fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20467fff6886SHong Zhang 2047b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2048a30f8f8cSSatish Balay a->bs = oldmat->bs; 2049a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2050a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2051a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2052a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2053a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2054a30f8f8cSSatish Balay 2055a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2056a30f8f8cSSatish Balay a->rend = oldmat->rend; 2057a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2058a30f8f8cSSatish Balay a->cend = oldmat->cend; 2059a30f8f8cSSatish Balay a->size = oldmat->size; 2060a30f8f8cSSatish Balay a->rank = oldmat->rank; 2061a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2062a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2063a30f8f8cSSatish Balay a->rowindices = 0; 2064a30f8f8cSSatish Balay a->rowvalues = 0; 2065a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2066a30f8f8cSSatish Balay a->barray = 0; 2067a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2068a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2069a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2070a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2071a30f8f8cSSatish Balay 2072a30f8f8cSSatish Balay /* hash table stuff */ 2073a30f8f8cSSatish Balay a->ht = 0; 2074a30f8f8cSSatish Balay a->hd = 0; 2075a30f8f8cSSatish Balay a->ht_size = 0; 2076a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2077a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2078a30f8f8cSSatish Balay a->ht_total_ct = 0; 2079a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2080a30f8f8cSSatish Balay 2081a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2082a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2083a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2084a30f8f8cSSatish Balay if (oldmat->colmap) { 2085a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2086a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2087a30f8f8cSSatish Balay #else 208882502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2089b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2090a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2091a30f8f8cSSatish Balay #endif 2092a30f8f8cSSatish Balay } else a->colmap = 0; 2093387bc808SHong Zhang 2094a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 209582502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2096b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2097a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2098a30f8f8cSSatish Balay } else a->garray = 0; 2099a30f8f8cSSatish Balay 2100a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2101b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2102a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2103b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 210482327fa8SHong Zhang 210582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 2106387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 210782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 2108387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2109387bc808SHong Zhang 2110387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21111ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2112387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2113387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21141ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21151ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2116387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21171ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 2118387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 2119387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2120387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0b); 2121387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1a); 2122387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1b); 2123387bc808SHong Zhang 2124387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2125387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2126387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 2127387bc808SHong Zhang PetscLogObjectParent(mat,a->sMvctx); 212882327fa8SHong Zhang 2129a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2130b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2131a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2132b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2133b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2134a30f8f8cSSatish Balay *newmat = mat; 2135a30f8f8cSSatish Balay PetscFunctionReturn(0); 2136a30f8f8cSSatish Balay } 2137a30f8f8cSSatish Balay 2138a30f8f8cSSatish Balay #include "petscsys.h" 2139a30f8f8cSSatish Balay 21404a2ae208SSatish Balay #undef __FUNCT__ 21414a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 21428e9aea5cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2143a30f8f8cSSatish Balay { 2144a30f8f8cSSatish Balay Mat A; 2145a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 214687828ca2SBarry Smith PetscScalar *vals,*buf; 2147a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2148a30f8f8cSSatish Balay MPI_Status status; 2149a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2150a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2151a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2152a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2153a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2154a30f8f8cSSatish Balay 2155a30f8f8cSSatish Balay PetscFunctionBegin; 2156b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2157a30f8f8cSSatish Balay 2158a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2159a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2160a30f8f8cSSatish Balay if (!rank) { 2161b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2162a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2163552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2164a30f8f8cSSatish Balay if (header[3] < 0) { 216529bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2166a30f8f8cSSatish Balay } 2167a30f8f8cSSatish Balay } 2168a30f8f8cSSatish Balay 2169a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2170a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2171a30f8f8cSSatish Balay 217229bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2173a30f8f8cSSatish Balay 2174a30f8f8cSSatish Balay /* 2175a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2176a30f8f8cSSatish Balay divisible by the blocksize 2177a30f8f8cSSatish Balay */ 2178a30f8f8cSSatish Balay Mbs = M/bs; 2179a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2180a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2181a30f8f8cSSatish Balay else Mbs++; 2182a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2183b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2184a30f8f8cSSatish Balay } 2185a30f8f8cSSatish Balay 2186a30f8f8cSSatish Balay /* determine ownership of all rows */ 2187a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2188a30f8f8cSSatish Balay m = mbs*bs; 2189b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2190a30f8f8cSSatish Balay browners = rowners + size + 1; 2191a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2192a30f8f8cSSatish Balay rowners[0] = 0; 2193a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2194a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2195a30f8f8cSSatish Balay rstart = rowners[rank]; 2196a30f8f8cSSatish Balay rend = rowners[rank+1]; 2197a30f8f8cSSatish Balay 2198a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 219982502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2200a30f8f8cSSatish Balay if (!rank) { 2201b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2202a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2203a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 220482502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2206a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2208a30f8f8cSSatish Balay } else { 2209a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay } 2211a30f8f8cSSatish Balay 22120222edb1SHong Zhang if (!rank) { /* procs[0] */ 2213a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 221482502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2216a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2217a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2218a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2219a30f8f8cSSatish Balay } 2220a30f8f8cSSatish Balay } 2221a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay 2223a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2224a30f8f8cSSatish Balay maxnz = 0; 2225a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2226a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2227a30f8f8cSSatish Balay } 222882502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2229a30f8f8cSSatish Balay 2230a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2231a30f8f8cSSatish Balay nz = procsnz[0]; 223282502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2233a30f8f8cSSatish Balay mycols = ibuf; 2234a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2235a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2236a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2237a30f8f8cSSatish Balay 2238a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2239a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2240a30f8f8cSSatish Balay nz = procsnz[i]; 2241a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2242a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2243a30f8f8cSSatish Balay } 2244a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2245a30f8f8cSSatish Balay if (size != 1) { 2246a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2247a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2248a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2249a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2250a30f8f8cSSatish Balay } 2251a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22520222edb1SHong Zhang } else { /* procs[i], i>0 */ 2253a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2254a30f8f8cSSatish Balay nz = 0; 2255a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2256a30f8f8cSSatish Balay nz += locrowlens[i]; 2257a30f8f8cSSatish Balay } 225882502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2259a30f8f8cSSatish Balay mycols = ibuf; 2260a30f8f8cSSatish Balay /* receive message of column indices*/ 2261a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2262a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 226329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2264a30f8f8cSSatish Balay } 2265a30f8f8cSSatish Balay 2266a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 226782502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2268a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 226982502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2270a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2271a30f8f8cSSatish Balay masked1 = mask + Mbs; 2272a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2273a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2274a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2275a30f8f8cSSatish Balay dcount = 0; 2276a30f8f8cSSatish Balay odcount = 0; 2277a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2278a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2279a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22800222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2281a30f8f8cSSatish Balay if (!mask[tmp]) { 2282a30f8f8cSSatish Balay mask[tmp] = 1; 22830222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22840222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2285a30f8f8cSSatish Balay } 2286a30f8f8cSSatish Balay } 2287a30f8f8cSSatish Balay rowcount++; 2288a30f8f8cSSatish Balay } 2289a30f8f8cSSatish Balay 22900222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22910222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2292a30f8f8cSSatish Balay 2293a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2294a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2295a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2296a30f8f8cSSatish Balay } 2297a30f8f8cSSatish Balay 2298a30f8f8cSSatish Balay /* create our matrix */ 229922191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 230022191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 230122191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2302273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2303a30f8f8cSSatish Balay 2304a30f8f8cSSatish Balay if (!rank) { 230587828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2306a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2307a30f8f8cSSatish Balay nz = procsnz[0]; 2308a30f8f8cSSatish Balay vals = buf; 2309a30f8f8cSSatish Balay mycols = ibuf; 2310a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2311a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2312a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2313a30f8f8cSSatish Balay 2314a30f8f8cSSatish Balay /* insert into matrix */ 2315a30f8f8cSSatish Balay jj = rstart*bs; 2316a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23177e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2318a30f8f8cSSatish Balay mycols += locrowlens[i]; 2319a30f8f8cSSatish Balay vals += locrowlens[i]; 2320a30f8f8cSSatish Balay jj++; 2321a30f8f8cSSatish Balay } 23227e06b45fSHong Zhang 2323a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2324a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2325a30f8f8cSSatish Balay nz = procsnz[i]; 2326a30f8f8cSSatish Balay vals = buf; 2327a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2328a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2329a30f8f8cSSatish Balay } 2330a30f8f8cSSatish Balay /* the last proc */ 2331a30f8f8cSSatish Balay if (size != 1){ 2332a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2333a30f8f8cSSatish Balay vals = buf; 2334a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2335a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2336a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2337a30f8f8cSSatish Balay } 2338a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23397e06b45fSHong Zhang 2340a30f8f8cSSatish Balay } else { 2341a30f8f8cSSatish Balay /* receive numeric values */ 234287828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2343a30f8f8cSSatish Balay 2344a30f8f8cSSatish Balay /* receive message of values*/ 2345a30f8f8cSSatish Balay vals = buf; 2346a30f8f8cSSatish Balay mycols = ibuf; 2347a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2348a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 234929bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2350a30f8f8cSSatish Balay 2351a30f8f8cSSatish Balay /* insert into matrix */ 2352a30f8f8cSSatish Balay jj = rstart*bs; 2353a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2354a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2355a30f8f8cSSatish Balay mycols += locrowlens[i]; 2356a30f8f8cSSatish Balay vals += locrowlens[i]; 2357a30f8f8cSSatish Balay jj++; 2358a30f8f8cSSatish Balay } 2359a30f8f8cSSatish Balay } 23607e06b45fSHong Zhang 2361a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2362a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2363a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2364a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2365a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2366a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2367a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2368a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 236922191285SKris Buschelman *newmat = A; 2370a30f8f8cSSatish Balay PetscFunctionReturn(0); 2371a30f8f8cSSatish Balay } 2372a30f8f8cSSatish Balay 23734a2ae208SSatish Balay #undef __FUNCT__ 23744a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2375a30f8f8cSSatish Balay /*@ 2376a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2377a30f8f8cSSatish Balay 2378a30f8f8cSSatish Balay Input Parameters: 2379a30f8f8cSSatish Balay . mat - the matrix 2380a30f8f8cSSatish Balay . fact - factor 2381a30f8f8cSSatish Balay 2382a30f8f8cSSatish Balay Collective on Mat 2383a30f8f8cSSatish Balay 2384a30f8f8cSSatish Balay Level: advanced 2385a30f8f8cSSatish Balay 2386a30f8f8cSSatish Balay Notes: 2387a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2388a30f8f8cSSatish Balay 2389a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2390a30f8f8cSSatish Balay 2391a30f8f8cSSatish Balay .seealso: MatSetOption() 2392a30f8f8cSSatish Balay @*/ 2393a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2394a30f8f8cSSatish Balay { 2395a30f8f8cSSatish Balay PetscFunctionBegin; 239629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 239796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2398a30f8f8cSSatish Balay } 239924d5174aSHong Zhang 24004a2ae208SSatish Balay #undef __FUNCT__ 24014a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 240224d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 240324d5174aSHong Zhang { 240424d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2405f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2406ca54ac64SHong Zhang PetscReal atmp; 240787828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2408ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2409154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 241087828ca2SBarry Smith PetscScalar *va; 24118a1c53f2SBarry Smith MatScalar *ba; 2412f4c0e9e4SHong Zhang MPI_Status stat; 241324d5174aSHong Zhang 241424d5174aSHong Zhang PetscFunctionBegin; 2415d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24161ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2417f4c0e9e4SHong Zhang 241856faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 241956faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2420f4c0e9e4SHong Zhang 2421f4c0e9e4SHong Zhang bs = a->bs; 2422f4c0e9e4SHong Zhang mbs = a->mbs; 2423f4c0e9e4SHong Zhang Mbs = a->Mbs; 2424f4c0e9e4SHong Zhang ba = b->a; 2425f4c0e9e4SHong Zhang bi = b->i; 2426f4c0e9e4SHong Zhang bj = b->j; 2427ca54ac64SHong Zhang /* 242856faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 242956faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2430ca54ac64SHong Zhang */ 2431f4c0e9e4SHong Zhang 2432f4c0e9e4SHong Zhang /* find ownerships */ 2433f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2434f4c0e9e4SHong Zhang /* 243504d41228SHong Zhang if (!rank){ 243604d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2437f4c0e9e4SHong Zhang } 2438f4c0e9e4SHong Zhang */ 2439f4c0e9e4SHong Zhang 2440f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 244182502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2442ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2443f4c0e9e4SHong Zhang 2444f4c0e9e4SHong Zhang /* row_max for B */ 2445b8475685SHong Zhang if (rank != size-1){ 2446f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2447f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2448f4c0e9e4SHong Zhang brow = bs*i; 2449f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2450f4c0e9e4SHong Zhang bcol = bs*(*bj); 2451f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2452ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 245304d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2454ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2455f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2456f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2457ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2458f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2459ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2460f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2461f4c0e9e4SHong Zhang } 2462f4c0e9e4SHong Zhang } 2463f4c0e9e4SHong Zhang bj++; 2464f4c0e9e4SHong Zhang } 2465f4c0e9e4SHong Zhang } 246604d41228SHong Zhang /* 246704d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 246804d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 246904d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 247004d41228SHong Zhang */ 2471f4c0e9e4SHong Zhang 2472f4c0e9e4SHong Zhang /* send values to its owners */ 2473f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2474f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2475ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 247656faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2477ca54ac64SHong Zhang /* 247856faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 247956faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2480ca54ac64SHong Zhang */ 2481ca54ac64SHong Zhang } 2482f4c0e9e4SHong Zhang } 2483f4c0e9e4SHong Zhang 2484f4c0e9e4SHong Zhang /* receive values */ 2485ca54ac64SHong Zhang if (rank){ 2486f4c0e9e4SHong Zhang rvalues = work; 2487ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2488f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 248956faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2490f4c0e9e4SHong Zhang /* process values */ 2491f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2492ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2493f4c0e9e4SHong Zhang } 2494ca54ac64SHong Zhang /* 249556faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 249656faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2497ca54ac64SHong Zhang */ 2498f4c0e9e4SHong Zhang } 2499ca54ac64SHong Zhang } 2500f4c0e9e4SHong Zhang 25011ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2502ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 250324d5174aSHong Zhang PetscFunctionReturn(0); 250424d5174aSHong Zhang } 25052798e883SHong Zhang 25062798e883SHong Zhang #undef __FUNCT__ 25072798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2508c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 25092798e883SHong Zhang { 25102798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2511ffe4fb16SHong Zhang int ierr,mbs=mat->mbs,bs=mat->bs; 2512ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2513ffe4fb16SHong Zhang Vec bb1; 2514ffe4fb16SHong Zhang 2515ffe4fb16SHong Zhang PetscFunctionBegin; 2516ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2517ffe4fb16SHong Zhang if (bs > 1) 2518ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2519ffe4fb16SHong Zhang 2520ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2521ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2522ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2523ffe4fb16SHong Zhang its--; 2524ffe4fb16SHong Zhang } 2525ffe4fb16SHong Zhang 2526ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2527ffe4fb16SHong Zhang while (its--){ 2528ffe4fb16SHong Zhang 2529ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2530ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2531ffe4fb16SHong Zhang 2532ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25331ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25341ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25361ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2537ffe4fb16SHong Zhang 2538ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2539ffe4fb16SHong Zhang 2540ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25411ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25421ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2543ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25441ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2545ffe4fb16SHong Zhang 2546ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2547ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2548ffe4fb16SHong Zhang 2549ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25501ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25511ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2552ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2553ffe4fb16SHong Zhang 2554ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2555ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2556ffe4fb16SHong Zhang 2557ffe4fb16SHong Zhang /* local diagonal sweep */ 2558ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2559ffe4fb16SHong Zhang } 2560ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2561ffe4fb16SHong Zhang } else { 2562ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2563ffe4fb16SHong Zhang } 2564ffe4fb16SHong Zhang PetscFunctionReturn(0); 2565ffe4fb16SHong Zhang } 2566ffe4fb16SHong Zhang 2567ffe4fb16SHong Zhang #undef __FUNCT__ 2568ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2569ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2570ffe4fb16SHong Zhang { 2571ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 25722798e883SHong Zhang int ierr; 2573d05c616dSSatish Balay PetscScalar mone=-1.0; 25742798e883SHong Zhang Vec lvec1,bb1; 25752798e883SHong Zhang 25762798e883SHong Zhang PetscFunctionBegin; 257791723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 25782798e883SHong Zhang if (mat->bs > 1) 25792798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25802798e883SHong Zhang 2581c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25822798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2583bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25842798e883SHong Zhang its--; 25852798e883SHong Zhang } 25862798e883SHong Zhang 25872798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25882798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25892798e883SHong Zhang while (its--){ 25902798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25912798e883SHong Zhang 25922798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25932798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25942798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25952798e883SHong Zhang 25962798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25972798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25982798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25992798e883SHong Zhang 26002798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 26012798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 26022798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26032798e883SHong Zhang 26042798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26052798e883SHong Zhang 2606c14dc6b6SHong Zhang /* diagonal sweep */ 2607bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26082798e883SHong Zhang } 26092798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26102798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2611c14dc6b6SHong Zhang } else { 2612c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2613c14dc6b6SHong Zhang } 26142798e883SHong Zhang PetscFunctionReturn(0); 26152798e883SHong Zhang } 26162798e883SHong Zhang 2617