xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 251f4c6745e69799cb0300fd80598c58f96eb452)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
267087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
417087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
55a30f8f8cSSatish Balay { \
56a30f8f8cSSatish Balay  \
57a30f8f8cSSatish Balay     brow = row/bs;  \
58a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
59a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
60a30f8f8cSSatish Balay       bcol = col/bs; \
61a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
62a30f8f8cSSatish Balay       low = 0; high = nrow; \
63a30f8f8cSSatish Balay       while (high-low > 3) { \
64a30f8f8cSSatish Balay         t = (low+high)/2; \
65a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
66a30f8f8cSSatish Balay         else              low  = t; \
67a30f8f8cSSatish Balay       } \
68a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
69a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
70a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
71a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
72a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
73a30f8f8cSSatish Balay           else                    *bap  = value;  \
74a30f8f8cSSatish Balay           goto a_noinsert; \
75a30f8f8cSSatish Balay         } \
76a30f8f8cSSatish Balay       } \
77a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
78e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
79fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
80a30f8f8cSSatish Balay       N = nrow++ - 1;  \
81a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
82a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
83a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
84a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
85a30f8f8cSSatish Balay       } \
86a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
87a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
88a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
89a30f8f8cSSatish Balay       a_noinsert:; \
90a30f8f8cSSatish Balay     ailen[brow] = nrow; \
91a30f8f8cSSatish Balay }
92e5e170daSBarry Smith 
93a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
94a30f8f8cSSatish Balay { \
95a30f8f8cSSatish Balay     brow = row/bs;  \
96a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
97a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
98a30f8f8cSSatish Balay       bcol = col/bs; \
99a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
100a30f8f8cSSatish Balay       low = 0; high = nrow; \
101a30f8f8cSSatish Balay       while (high-low > 3) { \
102a30f8f8cSSatish Balay         t = (low+high)/2; \
103a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
104a30f8f8cSSatish Balay         else              low  = t; \
105a30f8f8cSSatish Balay       } \
106a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
107a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
108a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
109a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
110a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
111a30f8f8cSSatish Balay           else                    *bap  = value;  \
112a30f8f8cSSatish Balay           goto b_noinsert; \
113a30f8f8cSSatish Balay         } \
114a30f8f8cSSatish Balay       } \
115a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
116e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
117fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
118a30f8f8cSSatish Balay       N = nrow++ - 1;  \
119a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
120a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
121a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
122a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay       } \
124a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
125a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
126a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
127a30f8f8cSSatish Balay       b_noinsert:; \
128a30f8f8cSSatish Balay     bilen[brow] = nrow; \
129a30f8f8cSSatish Balay }
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
132a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
133a30f8f8cSSatish Balay */
1344a2ae208SSatish Balay #undef __FUNCT__
135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
137a30f8f8cSSatish Balay {
138a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
139a30f8f8cSSatish Balay   MatScalar      value;
140ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
1421302d50aSBarry Smith   PetscInt       i,j,row,col;
143d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
144d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
145d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   /* Some Variables required in the macro */
148a30f8f8cSSatish Balay   Mat            A = baij->A;
149a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1501302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
151a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
152a30f8f8cSSatish Balay 
153a30f8f8cSSatish Balay   Mat            B = baij->B;
154a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1551302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
156a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
157a30f8f8cSSatish Balay 
1581302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1591302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
160a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
161a30f8f8cSSatish Balay 
162a30f8f8cSSatish Balay   /* for stash */
163910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
164910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
16771fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
168a30f8f8cSSatish Balay   if (!baij->donotstash){
16959ffdab8SBarry Smith     if (n > baij->n_loc) {
17059ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17159ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17259ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       baij->n_loc = n;
17559ffdab8SBarry Smith     }
17659ffdab8SBarry Smith     in_loc = baij->in_loc;
17759ffdab8SBarry Smith     v_loc  = baij->v_loc;
178a30f8f8cSSatish Balay   }
179a30f8f8cSSatish Balay 
180a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
181a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
183e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
184a30f8f8cSSatish Balay #endif
185a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
186a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
187a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18801b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
18901b2bd88SHong Zhang           if (a->ignore_ltriangular){
19001b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19101b2bd88SHong Zhang           } else {
192e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19301b2bd88SHong Zhang           }
19401b2bd88SHong Zhang         }
195a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
196a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
197a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
198a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
199a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
200a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
201a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
202a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
204cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
205a30f8f8cSSatish Balay #endif
206a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
207a30f8f8cSSatish Balay           if (mat->was_assembled) {
208a30f8f8cSSatish Balay             if (!baij->colmap) {
209ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
210a30f8f8cSSatish Balay             }
211a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
212a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21371730473SSatish Balay             col  = col - 1;
214a30f8f8cSSatish Balay #else
21571730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
216a30f8f8cSSatish Balay #endif
217a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
218ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
219a30f8f8cSSatish Balay               col =  in[j];
220a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
221a30f8f8cSSatish Balay               B = baij->B;
222a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
223a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
224a30f8f8cSSatish Balay               ba=b->a;
22571730473SSatish Balay             } else col += in[j]%bs;
226a30f8f8cSSatish Balay           } else col = in[j];
227a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
228a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
229a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
230a30f8f8cSSatish Balay         }
231a30f8f8cSSatish Balay       }
232a30f8f8cSSatish Balay     } else {  /* off processor entry */
2334cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
234a30f8f8cSSatish Balay       if (!baij->donotstash) {
2355080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
261ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
281e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
286f3f98c53SJed Brown         if (im[i] > in[j]) {
287f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
288e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
289f3f98c53SJed Brown         }
2900880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2910880e062SHong Zhang         if ((roworiented) && (n == 1)) {
292f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2930880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
294f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2950880e062SHong Zhang         } else { /* Here a copy is required */
2960880e062SHong Zhang           if (roworiented) {
2970880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2980880e062SHong Zhang           } else {
2990880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3000880e062SHong Zhang           }
3010880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3020880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3030880e062SHong Zhang               *barray++  = *value++;
3040880e062SHong Zhang             }
3050880e062SHong Zhang           }
3060880e062SHong Zhang           barray -=bs2;
3070880e062SHong Zhang         }
3080880e062SHong Zhang 
3090880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3100880e062SHong Zhang           col  = in[j] - cstart;
3110880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3120880e062SHong Zhang         }
3130880e062SHong Zhang         else if (in[j] < 0) continue;
3142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
315cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3160880e062SHong Zhang #endif
3170880e062SHong Zhang         else {
3180880e062SHong Zhang           if (mat->was_assembled) {
3190880e062SHong Zhang             if (!baij->colmap) {
320ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3210880e062SHong Zhang             }
3220880e062SHong Zhang 
3232515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3240880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3251302d50aSBarry Smith             { PetscInt data;
3260880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
327e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3280880e062SHong Zhang             }
3290880e062SHong Zhang #else
330e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #endif
3330880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3340880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3350880e062SHong Zhang             col  = (col - 1)/bs;
3360880e062SHong Zhang #else
3370880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3380880e062SHong Zhang #endif
3390880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
340ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3410880e062SHong Zhang               col =  in[j];
3420880e062SHong Zhang             }
3430880e062SHong Zhang           }
3440880e062SHong Zhang           else col = in[j];
345e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3460880e062SHong Zhang         }
3470880e062SHong Zhang       }
3480880e062SHong Zhang     } else {
3494cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3500880e062SHong Zhang       if (!baij->donotstash) {
3510880e062SHong Zhang         if (roworiented) {
3520880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         } else {
3540880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3550880e062SHong Zhang         }
3560880e062SHong Zhang       }
3570880e062SHong Zhang     }
3580880e062SHong Zhang   }
3590880e062SHong Zhang   PetscFunctionReturn(0);
360a30f8f8cSSatish Balay }
361a30f8f8cSSatish Balay 
3624a2ae208SSatish Balay #undef __FUNCT__
3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
365a30f8f8cSSatish Balay {
366f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3676849ba73SBarry Smith   PetscErrorCode ierr;
368d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
369d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
370a30f8f8cSSatish Balay 
371a30f8f8cSSatish Balay   PetscFunctionBegin;
372a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
373e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
374e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
375a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
376a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
377a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
378e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
379e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
380a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
381a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
382c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
383a30f8f8cSSatish Balay         } else {
384a30f8f8cSSatish Balay           if (!baij->colmap) {
385ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
386a30f8f8cSSatish Balay           }
387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
388a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
389a30f8f8cSSatish Balay           data --;
390a30f8f8cSSatish Balay #else
391a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
392a30f8f8cSSatish Balay #endif
393a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
394a30f8f8cSSatish Balay           else {
395a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
396e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
397a30f8f8cSSatish Balay           }
398a30f8f8cSSatish Balay         }
399a30f8f8cSSatish Balay       }
400a30f8f8cSSatish Balay     } else {
401e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
402a30f8f8cSSatish Balay     }
403a30f8f8cSSatish Balay   }
404a30f8f8cSSatish Balay  PetscFunctionReturn(0);
405a30f8f8cSSatish Balay }
406a30f8f8cSSatish Balay 
4074a2ae208SSatish Balay #undef __FUNCT__
4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
410a30f8f8cSSatish Balay {
411a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
412dfbe8321SBarry Smith   PetscErrorCode ierr;
413a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
414a30f8f8cSSatish Balay 
415a30f8f8cSSatish Balay   PetscFunctionBegin;
416a30f8f8cSSatish Balay   if (baij->size == 1) {
417a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
418a30f8f8cSSatish Balay   } else {
419a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
420f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
422a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
423a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
424a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
425d9822059SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4268f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2*sum[1]);
427a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4280b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4290b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4300b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4310b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
432899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
433d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4340b8dc8d2SHong Zhang       MatScalar    *v;
4350b8dc8d2SHong Zhang 
43674ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
437d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4380b8dc8d2SHong Zhang       /* Amat */
4390b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4400b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4410b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4420b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4430b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4440b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4450b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4460b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4470b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4480b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4490b8dc8d2SHong Zhang               /* non-diagonal block */
4500b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4510b8dc8d2SHong Zhang             }
4520b8dc8d2SHong Zhang           }
4530b8dc8d2SHong Zhang         }
4540b8dc8d2SHong Zhang       }
4550b8dc8d2SHong Zhang       /* Bmat */
4560b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4570b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4580b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4590b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4600b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4610b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4620b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4630b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4640b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4650b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4660b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4670b8dc8d2SHong Zhang             }
4680b8dc8d2SHong Zhang           }
4690b8dc8d2SHong Zhang         }
4700b8dc8d2SHong Zhang       }
471d9822059SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4720b8dc8d2SHong Zhang       *norm = 0.0;
473d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4740b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4750b8dc8d2SHong Zhang       }
47674ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
477a30f8f8cSSatish Balay     } else {
478e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
479a30f8f8cSSatish Balay     }
480a30f8f8cSSatish Balay   }
481a30f8f8cSSatish Balay   PetscFunctionReturn(0);
482a30f8f8cSSatish Balay }
483a30f8f8cSSatish Balay 
4844a2ae208SSatish Balay #undef __FUNCT__
4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
487a30f8f8cSSatish Balay {
488a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
489dfbe8321SBarry Smith   PetscErrorCode ierr;
4901302d50aSBarry Smith   PetscInt       nstash,reallocs;
491a30f8f8cSSatish Balay   InsertMode     addv;
492a30f8f8cSSatish Balay 
493a30f8f8cSSatish Balay   PetscFunctionBegin;
4944cb17eb5SBarry Smith   if (baij->donotstash || mat->nooffprocentries) {
495a30f8f8cSSatish Balay     PetscFunctionReturn(0);
496a30f8f8cSSatish Balay   }
497a30f8f8cSSatish Balay 
498a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4997adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
500e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
501a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
502a30f8f8cSSatish Balay 
503d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5081e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
509a30f8f8cSSatish Balay   PetscFunctionReturn(0);
510a30f8f8cSSatish Balay }
511a30f8f8cSSatish Balay 
5124a2ae208SSatish Balay #undef __FUNCT__
5134a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
514dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
515a30f8f8cSSatish Balay {
516a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
517a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5186849ba73SBarry Smith   PetscErrorCode ierr;
51913f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
520e44c0bd4SBarry Smith   PetscInt       *row,*col;
521ace3abfcSBarry Smith   PetscBool      other_disassembled;
52213f74950SBarry Smith   PetscMPIInt    n;
523ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
524a30f8f8cSSatish Balay   MatScalar      *val;
525a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
526a30f8f8cSSatish Balay 
52791c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
528a30f8f8cSSatish Balay   PetscFunctionBegin;
529a30f8f8cSSatish Balay 
5304cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
531a30f8f8cSSatish Balay     while (1) {
532a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
533a30f8f8cSSatish Balay       if (!flg) break;
534a30f8f8cSSatish Balay 
535a30f8f8cSSatish Balay       for (i=0; i<n;) {
536a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
537a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
538a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
539a30f8f8cSSatish Balay         else       ncols = n-i;
540a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
541dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
542a30f8f8cSSatish Balay         i = j;
543a30f8f8cSSatish Balay       }
544a30f8f8cSSatish Balay     }
545a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
546a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
547a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
548a30f8f8cSSatish Balay        restore the original flags */
549a30f8f8cSSatish Balay     r1 = baij->roworiented;
550a30f8f8cSSatish Balay     r2 = a->roworiented;
55191c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
552a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
553a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
555a30f8f8cSSatish Balay     while (1) {
556a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
557a30f8f8cSSatish Balay       if (!flg) break;
558a30f8f8cSSatish Balay 
559a30f8f8cSSatish Balay       for (i=0; i<n;) {
560a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
561a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
562a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
563a30f8f8cSSatish Balay         else       ncols = n-i;
564dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
565a30f8f8cSSatish Balay         i = j;
566a30f8f8cSSatish Balay       }
567a30f8f8cSSatish Balay     }
568a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
569a30f8f8cSSatish Balay     baij->roworiented = r1;
570a30f8f8cSSatish Balay     a->roworiented    = r2;
57191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
572a30f8f8cSSatish Balay   }
573a30f8f8cSSatish Balay 
574a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
576a30f8f8cSSatish Balay 
577a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
578a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
579a30f8f8cSSatish Balay   /*
580a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
581a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
582a30f8f8cSSatish Balay   */
583a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5847adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
586ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
587a30f8f8cSSatish Balay     }
588a30f8f8cSSatish Balay   }
589a30f8f8cSSatish Balay 
590a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
592a30f8f8cSSatish Balay   }
593cd6b891eSBarry Smith   ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr);
594a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
595a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
596a30f8f8cSSatish Balay 
59774ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
598a30f8f8cSSatish Balay   baij->rowvalues = 0;
5995222a1afSHong Zhang 
600a30f8f8cSSatish Balay   PetscFunctionReturn(0);
601a30f8f8cSSatish Balay }
602a30f8f8cSSatish Balay 
603dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6044a2ae208SSatish Balay #undef __FUNCT__
6054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6066849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
607a30f8f8cSSatish Balay {
608a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
609dfbe8321SBarry Smith   PetscErrorCode    ierr;
610d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6111302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
612ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
613b0a32e0cSBarry Smith   PetscViewer       sviewer;
614f3ef73ceSBarry Smith   PetscViewerFormat format;
615a30f8f8cSSatish Balay 
616a30f8f8cSSatish Balay   PetscFunctionBegin;
617*251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
618*251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
61932077d6dSBarry Smith   if (iascii) {
620b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
621456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
622a30f8f8cSSatish Balay       MatInfo info;
6237adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
624a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6257b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6267b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
627a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
628e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
629a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
630e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
631b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6327b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63307d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
634a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
635a30f8f8cSSatish Balay       PetscFunctionReturn(0);
636fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63777431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
638a30f8f8cSSatish Balay       PetscFunctionReturn(0);
639c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
640c1490034SHong Zhang       PetscFunctionReturn(0);
641a30f8f8cSSatish Balay     }
642a30f8f8cSSatish Balay   }
643a30f8f8cSSatish Balay 
644a30f8f8cSSatish Balay   if (isdraw) {
645b0a32e0cSBarry Smith     PetscDraw  draw;
646ace3abfcSBarry Smith     PetscBool  isnull;
647b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
648b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
649a30f8f8cSSatish Balay   }
650a30f8f8cSSatish Balay 
651a30f8f8cSSatish Balay   if (size == 1) {
6527adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
653a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
654a30f8f8cSSatish Balay   } else {
655a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
656a30f8f8cSSatish Balay     Mat          A;
65765d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65865d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
659d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
660a30f8f8cSSatish Balay     MatScalar    *a;
661a30f8f8cSSatish Balay 
662f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6637adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     if (!rank) {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     } else {
667f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     }
669f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
670d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
6712b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
67252e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
673a30f8f8cSSatish Balay 
674a30f8f8cSSatish Balay     /* copy over the A part */
67565d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
676a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6771302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
678a30f8f8cSSatish Balay 
679a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
680e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
681a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
682a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
683e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
684a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
685dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
686a30f8f8cSSatish Balay           col++; a += bs;
687a30f8f8cSSatish Balay         }
688a30f8f8cSSatish Balay       }
689a30f8f8cSSatish Balay     }
690a30f8f8cSSatish Balay     /* copy over the B part */
69165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69265d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
693a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
694e9f7bc9eSHong Zhang 
695e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
696a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
697a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
698a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
699a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
700799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
701a30f8f8cSSatish Balay           col++; a += bs;
702a30f8f8cSSatish Balay         }
703a30f8f8cSSatish Balay       }
704a30f8f8cSSatish Balay     }
705a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
707a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
708a30f8f8cSSatish Balay     /*
709a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
710b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
711a30f8f8cSSatish Balay     */
712b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71365d70643SHong Zhang     if (!rank) {
7147adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7157566de4bSShri Abhyankar           /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/
7167566de4bSShri Abhyankar       PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ);
717a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
718a30f8f8cSSatish Balay     }
719b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7206bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
721a30f8f8cSSatish Balay   }
722a30f8f8cSSatish Balay   PetscFunctionReturn(0);
723a30f8f8cSSatish Balay }
724a30f8f8cSSatish Balay 
7254a2ae208SSatish Balay #undef __FUNCT__
7264a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
727dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
728a30f8f8cSSatish Balay {
729dfbe8321SBarry Smith   PetscErrorCode ierr;
730ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
731a30f8f8cSSatish Balay 
732a30f8f8cSSatish Balay   PetscFunctionBegin;
733*251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
734*251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
735*251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
736*251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73732077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
738a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
739a30f8f8cSSatish Balay   } else {
740e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
741a30f8f8cSSatish Balay   }
742a30f8f8cSSatish Balay   PetscFunctionReturn(0);
743a30f8f8cSSatish Balay }
744a30f8f8cSSatish Balay 
7454a2ae208SSatish Balay #undef __FUNCT__
7464a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
747dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
748a30f8f8cSSatish Balay {
749a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
750dfbe8321SBarry Smith   PetscErrorCode ierr;
751a30f8f8cSSatish Balay 
752a30f8f8cSSatish Balay   PetscFunctionBegin;
753a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
754d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
755a30f8f8cSSatish Balay #endif
756a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7586bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7596bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
760a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7616bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
762a30f8f8cSSatish Balay #else
76305b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
764a30f8f8cSSatish Balay #endif
76505b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7666bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7676bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7686bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7726bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7736bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7745755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77605b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7776bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7786bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7796bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
780ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
78105b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
782a30f8f8cSSatish Balay #endif
78359ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78459ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
785899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
786bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
787901853e0SKris Buschelman 
788dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
792901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
793aa5a9175SDahai Guo   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C","",PETSC_NULL);CHKERRQ(ierr);
794a30f8f8cSSatish Balay   PetscFunctionReturn(0);
795a30f8f8cSSatish Balay }
796a30f8f8cSSatish Balay 
7974a2ae208SSatish Balay #undef __FUNCT__
798547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
799547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
800547795f9SHong Zhang {
801547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
802547795f9SHong Zhang   PetscErrorCode ierr;
803547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
804547795f9SHong Zhang   PetscScalar    *x,*from;
805547795f9SHong Zhang 
806547795f9SHong Zhang   PetscFunctionBegin;
807547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
808e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
809547795f9SHong Zhang 
810547795f9SHong Zhang   /* diagonal part */
811547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
812547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
813547795f9SHong Zhang 
814547795f9SHong Zhang   /* subdiagonal part */
815547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
816547795f9SHong Zhang 
817547795f9SHong Zhang   /* copy x into the vec slvec0 */
818547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
819547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
820547795f9SHong Zhang 
821547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
823547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
824547795f9SHong Zhang 
825547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
827547795f9SHong Zhang   /* supperdiagonal part */
828547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
829547795f9SHong Zhang   PetscFunctionReturn(0);
830547795f9SHong Zhang }
831547795f9SHong Zhang 
832547795f9SHong Zhang #undef __FUNCT__
833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
835a9d4b620SHong Zhang {
836a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
837dfbe8321SBarry Smith   PetscErrorCode ierr;
838d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
839fa22f6d0SBarry Smith   PetscScalar    *x,*from;
840a9d4b620SHong Zhang 
841a9d4b620SHong Zhang   PetscFunctionBegin;
842a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
843e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
844a9d4b620SHong Zhang 
845a9d4b620SHong Zhang   /* diagonal part */
846a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
847fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
848a9d4b620SHong Zhang 
849a9d4b620SHong Zhang   /* subdiagonal part */
850a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
851fc165ae2SBarry Smith 
852a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8531ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8541ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
855a9d4b620SHong Zhang 
856fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
857fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8581ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
859fc165ae2SBarry Smith 
860fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
861ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
862a9d4b620SHong Zhang   /* supperdiagonal part */
863a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
864a9d4b620SHong Zhang   PetscFunctionReturn(0);
865a9d4b620SHong Zhang }
866a9d4b620SHong Zhang 
867a9d4b620SHong Zhang #undef __FUNCT__
86840781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
869dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
870a30f8f8cSSatish Balay {
871a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
872dfbe8321SBarry Smith   PetscErrorCode ierr;
8731302d50aSBarry Smith   PetscInt       nt;
874a30f8f8cSSatish Balay 
875a30f8f8cSSatish Balay   PetscFunctionBegin;
876a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
877e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
878e7e72b3dSBarry Smith 
879a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
880e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88165d70643SHong Zhang 
882ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
883b941877fSHong Zhang   /* do diagonal part */
884b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
885b941877fSHong Zhang   /* do supperdiagonal part */
886ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
887b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
888b941877fSHong Zhang   /* do subdiagonal part */
889b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
890ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
891ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89265d70643SHong Zhang 
893a30f8f8cSSatish Balay   PetscFunctionReturn(0);
894a30f8f8cSSatish Balay }
895a30f8f8cSSatish Balay 
8964a2ae208SSatish Balay #undef __FUNCT__
8974a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
898dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
899a30f8f8cSSatish Balay {
900de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
901dfbe8321SBarry Smith   PetscErrorCode ierr;
902d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
903a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
904a9d4b620SHong Zhang 
905a9d4b620SHong Zhang   PetscFunctionBegin;
906a9d4b620SHong Zhang   /*
9077adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9087adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
909a9d4b620SHong Zhang   */
910a9d4b620SHong Zhang   /* diagonal part */
911a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9122dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
913a9d4b620SHong Zhang 
914a9d4b620SHong Zhang   /* subdiagonal part */
915a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
916a9d4b620SHong Zhang 
917a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9181ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9191ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
920a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9211ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
922a9d4b620SHong Zhang 
923ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9241ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
925ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
926a9d4b620SHong Zhang 
927a9d4b620SHong Zhang   /* supperdiagonal part */
928a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
929a9d4b620SHong Zhang 
930a9d4b620SHong Zhang   PetscFunctionReturn(0);
931a9d4b620SHong Zhang }
932a9d4b620SHong Zhang 
933a9d4b620SHong Zhang #undef __FUNCT__
934a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
935dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
936a9d4b620SHong Zhang {
937a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
938dfbe8321SBarry Smith   PetscErrorCode ierr;
939a30f8f8cSSatish Balay 
940a30f8f8cSSatish Balay   PetscFunctionBegin;
941ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
942b941877fSHong Zhang   /* do diagonal part */
943b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
944b941877fSHong Zhang   /* do supperdiagonal part */
945ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
946de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
947de8b6608SHong Zhang 
948b941877fSHong Zhang   /* do subdiagonal part */
949a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
950ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
951ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
952aa482183SHong Zhang 
953a30f8f8cSSatish Balay   PetscFunctionReturn(0);
954a30f8f8cSSatish Balay }
955a30f8f8cSSatish Balay 
956a30f8f8cSSatish Balay /*
957a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
958a30f8f8cSSatish Balay    diagonal block
959a30f8f8cSSatish Balay */
9604a2ae208SSatish Balay #undef __FUNCT__
9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
963a30f8f8cSSatish Balay {
964a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
965dfbe8321SBarry Smith   PetscErrorCode ierr;
966a30f8f8cSSatish Balay 
967a30f8f8cSSatish Balay   PetscFunctionBegin;
968e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
969a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
970a30f8f8cSSatish Balay   PetscFunctionReturn(0);
971a30f8f8cSSatish Balay }
972a30f8f8cSSatish Balay 
9734a2ae208SSatish Balay #undef __FUNCT__
9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
976a30f8f8cSSatish Balay {
977a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
978dfbe8321SBarry Smith   PetscErrorCode ierr;
979a30f8f8cSSatish Balay 
980a30f8f8cSSatish Balay   PetscFunctionBegin;
981f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
982f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
983a30f8f8cSSatish Balay   PetscFunctionReturn(0);
984a30f8f8cSSatish Balay }
985a30f8f8cSSatish Balay 
9864a2ae208SSatish Balay #undef __FUNCT__
9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
989a30f8f8cSSatish Balay {
990d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
991d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
992d0d4cfc2SHong Zhang   PetscErrorCode ierr;
993d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
994d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
995899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
996d0d4cfc2SHong Zhang 
997a30f8f8cSSatish Balay   PetscFunctionBegin;
998e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
999d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1000d0d4cfc2SHong Zhang 
1001d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1002d0d4cfc2SHong Zhang     /*
1003d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1004d0d4cfc2SHong Zhang     */
1005d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1006d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1007d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1008d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1009d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1010d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1011d0d4cfc2SHong Zhang     }
101274ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1013d0d4cfc2SHong Zhang   }
1014d0d4cfc2SHong Zhang 
1015e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1016d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1017d0d4cfc2SHong Zhang 
1018d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1019d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1020d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1021d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1022d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1023d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1024d0d4cfc2SHong Zhang 
1025d0d4cfc2SHong Zhang   cmap  = mat->garray;
1026d0d4cfc2SHong Zhang   if (v  || idx) {
1027d0d4cfc2SHong Zhang     if (nztot) {
1028d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1029d0d4cfc2SHong Zhang       PetscInt imark = -1;
1030d0d4cfc2SHong Zhang       if (v) {
1031d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1032d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1033d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1034d0d4cfc2SHong Zhang           else break;
1035d0d4cfc2SHong Zhang         }
1036d0d4cfc2SHong Zhang         imark = i;
1037d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1038d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1039d0d4cfc2SHong Zhang       }
1040d0d4cfc2SHong Zhang       if (idx) {
1041d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1042d0d4cfc2SHong Zhang         if (imark > -1) {
1043d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1044d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1045d0d4cfc2SHong Zhang           }
1046d0d4cfc2SHong Zhang         } else {
1047d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1048d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1049d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1050d0d4cfc2SHong Zhang             else break;
1051d0d4cfc2SHong Zhang           }
1052d0d4cfc2SHong Zhang           imark = i;
1053d0d4cfc2SHong Zhang         }
1054d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1055d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1056d0d4cfc2SHong Zhang       }
1057d0d4cfc2SHong Zhang     } else {
1058d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1059d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1060d0d4cfc2SHong Zhang     }
1061d0d4cfc2SHong Zhang   }
1062d0d4cfc2SHong Zhang   *nz = nztot;
1063d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1064d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1065a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1066a30f8f8cSSatish Balay }
1067a30f8f8cSSatish Balay 
10684a2ae208SSatish Balay #undef __FUNCT__
10694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10701302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1071a30f8f8cSSatish Balay {
1072a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1073a30f8f8cSSatish Balay 
1074a30f8f8cSSatish Balay   PetscFunctionBegin;
1075e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1076a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1077a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1078a30f8f8cSSatish Balay }
1079a30f8f8cSSatish Balay 
10804a2ae208SSatish Balay #undef __FUNCT__
1081d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1082d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1083d0d4cfc2SHong Zhang {
1084d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1085d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1086d0d4cfc2SHong Zhang 
1087d0d4cfc2SHong Zhang   PetscFunctionBegin;
1088d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1089d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1090d0d4cfc2SHong Zhang }
1091d0d4cfc2SHong Zhang #undef __FUNCT__
1092d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1093d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1094d0d4cfc2SHong Zhang {
1095d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1096d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1097d0d4cfc2SHong Zhang 
1098d0d4cfc2SHong Zhang   PetscFunctionBegin;
1099d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1100d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1101d0d4cfc2SHong Zhang }
1102d0d4cfc2SHong Zhang 
1103d0d4cfc2SHong Zhang #undef __FUNCT__
110499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110699cafbc1SBarry Smith {
110799cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110899cafbc1SBarry Smith   PetscErrorCode ierr;
110999cafbc1SBarry Smith 
111099cafbc1SBarry Smith   PetscFunctionBegin;
111199cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111299cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111399cafbc1SBarry Smith   PetscFunctionReturn(0);
111499cafbc1SBarry Smith }
111599cafbc1SBarry Smith 
111699cafbc1SBarry Smith #undef __FUNCT__
111799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111999cafbc1SBarry Smith {
112099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112199cafbc1SBarry Smith   PetscErrorCode ierr;
112299cafbc1SBarry Smith 
112399cafbc1SBarry Smith   PetscFunctionBegin;
112499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112699cafbc1SBarry Smith   PetscFunctionReturn(0);
112799cafbc1SBarry Smith }
112899cafbc1SBarry Smith 
112999cafbc1SBarry Smith #undef __FUNCT__
11304a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1131dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1132a30f8f8cSSatish Balay {
1133a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1134dfbe8321SBarry Smith   PetscErrorCode ierr;
1135a30f8f8cSSatish Balay 
1136a30f8f8cSSatish Balay   PetscFunctionBegin;
1137a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1138a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1139a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1140a30f8f8cSSatish Balay }
1141a30f8f8cSSatish Balay 
11424a2ae208SSatish Balay #undef __FUNCT__
11434a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1144dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1145a30f8f8cSSatish Balay {
1146a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1147a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1148dfbe8321SBarry Smith   PetscErrorCode ierr;
1149a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1150a30f8f8cSSatish Balay 
1151a30f8f8cSSatish Balay   PetscFunctionBegin;
1152d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1153a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1154a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1155a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1156a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1157a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1158a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1159a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1160a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1161a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1162a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1163a30f8f8cSSatish Balay     info->memory       = isend[3];
1164a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1165a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1166d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1167a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1168a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1169a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1170a30f8f8cSSatish Balay     info->memory       = irecv[3];
1171a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1172a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1173d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1174a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1175a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1176a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1177a30f8f8cSSatish Balay     info->memory       = irecv[3];
1178a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1179a30f8f8cSSatish Balay   } else {
1180e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1181a30f8f8cSSatish Balay   }
1182a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1183a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1184a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1185a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1186a30f8f8cSSatish Balay }
1187a30f8f8cSSatish Balay 
11884a2ae208SSatish Balay #undef __FUNCT__
11894a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1190ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool  flg)
1191a30f8f8cSSatish Balay {
1192a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1193d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1194dfbe8321SBarry Smith   PetscErrorCode ierr;
1195a30f8f8cSSatish Balay 
1196a30f8f8cSSatish Balay   PetscFunctionBegin;
1197e98b92d7SKris Buschelman   switch (op) {
1198512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1199e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1201a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1202e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12034e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12044e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1205e98b92d7SKris Buschelman     break;
1206e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12074e0d8c25SBarry Smith     a->roworiented = flg;
12084e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12094e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1210e98b92d7SKris Buschelman     break;
12114e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1212290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1213e98b92d7SKris Buschelman     break;
1214e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12154e0d8c25SBarry Smith     a->donotstash = flg;
1216e98b92d7SKris Buschelman     break;
1217e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12184e0d8c25SBarry Smith     a->ht_flag = flg;
1219e98b92d7SKris Buschelman     break;
12209a4540c5SBarry Smith   case MAT_HERMITIAN:
1221e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1222eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1223547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1224eeffb40dSHong Zhang     break;
1225ffa07934SHong Zhang   case MAT_SPD:
1226ffa07934SHong Zhang     A->spd_set                         = PETSC_TRUE;
1227ffa07934SHong Zhang     A->spd                             = flg;
1228ffa07934SHong Zhang     if (flg) {
1229ffa07934SHong Zhang       A->symmetric                     = PETSC_TRUE;
1230ffa07934SHong Zhang       A->structurally_symmetric        = PETSC_TRUE;
1231ffa07934SHong Zhang       A->symmetric_set                 = PETSC_TRUE;
1232ffa07934SHong Zhang       A->structurally_symmetric_set    = PETSC_TRUE;
1233ffa07934SHong Zhang     }
1234ffa07934SHong Zhang     break;
123577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1236eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1237eeffb40dSHong Zhang     break;
123877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1239eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1240eeffb40dSHong Zhang     break;
12419a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1242e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1243290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124477e54ba9SKris Buschelman     break;
1245d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12464e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1247d0d4cfc2SHong Zhang     break;
1248d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12494e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1250d0d4cfc2SHong Zhang     break;
1251d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12524e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1253d0d4cfc2SHong Zhang     break;
1254e98b92d7SKris Buschelman   default:
1255e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1256a30f8f8cSSatish Balay   }
1257a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1258a30f8f8cSSatish Balay }
1259a30f8f8cSSatish Balay 
12604a2ae208SSatish Balay #undef __FUNCT__
12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1263a30f8f8cSSatish Balay {
1264dfbe8321SBarry Smith   PetscErrorCode ierr;
1265a30f8f8cSSatish Balay   PetscFunctionBegin;
1266815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1267999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1268fc4dec0aSBarry Smith   }
12698115998fSBarry Smith   PetscFunctionReturn(0);
1270a30f8f8cSSatish Balay }
1271a30f8f8cSSatish Balay 
12724a2ae208SSatish Balay #undef __FUNCT__
12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1275a30f8f8cSSatish Balay {
1276a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1277a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1278dfbe8321SBarry Smith   PetscErrorCode ierr;
12795e90f9d9SHong Zhang   PetscInt       nv,m,n;
1280ace3abfcSBarry Smith   PetscBool      flg;
1281a30f8f8cSSatish Balay 
1282a30f8f8cSSatish Balay   PetscFunctionBegin;
1283a30f8f8cSSatish Balay   if (ll != rr){
1284b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1285e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1286a30f8f8cSSatish Balay   }
1287b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1288b3bf805bSHong Zhang 
12895e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1290e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1291b3bf805bSHong Zhang 
12925e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1293e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12945e90f9d9SHong Zhang 
1295ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12965e90f9d9SHong Zhang 
12975e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1298a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12995e90f9d9SHong Zhang 
13005e90f9d9SHong Zhang   /* scale the diagonal part */
1301a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1302a30f8f8cSSatish Balay 
13035e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1304ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1305a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1306a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1307a30f8f8cSSatish Balay }
1308a30f8f8cSSatish Balay 
13094a2ae208SSatish Balay #undef __FUNCT__
13104a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1311dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1312a30f8f8cSSatish Balay {
1313f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1314dfbe8321SBarry Smith   PetscErrorCode ierr;
1315a30f8f8cSSatish Balay 
1316a30f8f8cSSatish Balay   PetscFunctionBegin;
1317a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1318a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1319a30f8f8cSSatish Balay }
1320a30f8f8cSSatish Balay 
13216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1322a30f8f8cSSatish Balay 
13234a2ae208SSatish Balay #undef __FUNCT__
13244a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1325ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1326a30f8f8cSSatish Balay {
1327a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1328a30f8f8cSSatish Balay   Mat            a,b,c,d;
1329ace3abfcSBarry Smith   PetscBool      flg;
1330dfbe8321SBarry Smith   PetscErrorCode ierr;
1331a30f8f8cSSatish Balay 
1332a30f8f8cSSatish Balay   PetscFunctionBegin;
1333a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1334a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1335a30f8f8cSSatish Balay 
1336a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1337abc0a331SBarry Smith   if (flg) {
1338a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1339a30f8f8cSSatish Balay   }
13407adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1341a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1342a30f8f8cSSatish Balay }
1343a30f8f8cSSatish Balay 
13444a2ae208SSatish Balay #undef __FUNCT__
13453c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13463c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13473c896bc6SHong Zhang {
13483c896bc6SHong Zhang   PetscErrorCode ierr;
13493c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13503c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13513c896bc6SHong Zhang 
13523c896bc6SHong Zhang   PetscFunctionBegin;
13533c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13543c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1355d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13563c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1357d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13583c896bc6SHong Zhang   } else {
13593c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13603c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13613c896bc6SHong Zhang   }
13623c896bc6SHong Zhang   PetscFunctionReturn(0);
13633c896bc6SHong Zhang }
13643c896bc6SHong Zhang 
13653c896bc6SHong Zhang #undef __FUNCT__
13664994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
13674994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1368273d9f13SBarry Smith {
1369dfbe8321SBarry Smith   PetscErrorCode ierr;
1370273d9f13SBarry Smith 
1371273d9f13SBarry Smith   PetscFunctionBegin;
1372535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1373273d9f13SBarry Smith   PetscFunctionReturn(0);
1374273d9f13SBarry Smith }
1375a5e6ed63SBarry Smith 
13764fe895cdSHong Zhang #undef __FUNCT__
13774fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13784fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13794fe895cdSHong Zhang {
13804fe895cdSHong Zhang   PetscErrorCode ierr;
13814fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13824fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13834fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13844fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13854fe895cdSHong Zhang 
13864fe895cdSHong Zhang   PetscFunctionBegin;
13874fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13884fe895cdSHong Zhang     PetscScalar alpha = a;
13894fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13904fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13910805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13924fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13934fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13944fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13950805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13964fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13974fe895cdSHong Zhang   } else {
1398d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13994fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1400d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14014fe895cdSHong Zhang   }
14024fe895cdSHong Zhang   PetscFunctionReturn(0);
14034fe895cdSHong Zhang }
14044fe895cdSHong Zhang 
1405a5e6ed63SBarry Smith #undef __FUNCT__
1406a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14071302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1408a5e6ed63SBarry Smith {
14096849ba73SBarry Smith   PetscErrorCode ierr;
14101302d50aSBarry Smith   PetscInt       i;
1411ace3abfcSBarry Smith   PetscBool      flg;
1412a5e6ed63SBarry Smith 
14136849ba73SBarry Smith   PetscFunctionBegin;
1414a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1415a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1416e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1417a5e6ed63SBarry Smith   }
1418a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1419a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1420a5e6ed63SBarry Smith }
1421a5e6ed63SBarry Smith 
1422a5e6ed63SBarry Smith 
1423a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1424a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1425a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1426a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1427a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1428a9d4b620SHong Zhang        MatMult_MPISBAIJ,
142997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1430431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1431431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1432a30f8f8cSSatish Balay        0,
1433a30f8f8cSSatish Balay        0,
1434a30f8f8cSSatish Balay        0,
143597304618SKris Buschelman /*10*/ 0,
1436a30f8f8cSSatish Balay        0,
1437a30f8f8cSSatish Balay        0,
143841f059aeSBarry Smith        MatSOR_MPISBAIJ,
1439a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
144097304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1441a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1442a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1443a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1444a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
144597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1446a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1447a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1448a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1449d519adbfSMatthew Knepley /*24*/ 0,
1450a30f8f8cSSatish Balay        0,
1451a30f8f8cSSatish Balay        0,
1452a30f8f8cSSatish Balay        0,
1453a30f8f8cSSatish Balay        0,
14544994cf47SJed Brown /*29*/ MatSetUp_MPISBAIJ,
1455b5df2d14SHong Zhang        0,
1456a30f8f8cSSatish Balay        0,
1457a30f8f8cSSatish Balay        0,
1458a30f8f8cSSatish Balay        0,
1459d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1460a30f8f8cSSatish Balay        0,
1461a30f8f8cSSatish Balay        0,
1462a30f8f8cSSatish Balay        0,
1463a30f8f8cSSatish Balay        0,
1464d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1465a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1466d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1467a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14683c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1469d519adbfSMatthew Knepley /*44*/ 0,
1470a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1471a30f8f8cSSatish Balay        0,
1472a30f8f8cSSatish Balay        0,
1473a30f8f8cSSatish Balay        0,
1474f73d5cc4SBarry Smith /*49*/ 0,
1475a30f8f8cSSatish Balay        0,
1476a30f8f8cSSatish Balay        0,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479d519adbfSMatthew Knepley /*54*/ 0,
1480a30f8f8cSSatish Balay        0,
1481a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1482a30f8f8cSSatish Balay        0,
1483a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1484d519adbfSMatthew Knepley /*59*/ 0,
1485a30f8f8cSSatish Balay        0,
1486a30f8f8cSSatish Balay        0,
1487357abbc8SBarry Smith        0,
148824d5174aSHong Zhang        0,
1489d519adbfSMatthew Knepley /*64*/ 0,
149024d5174aSHong Zhang        0,
149124d5174aSHong Zhang        0,
149224d5174aSHong Zhang        0,
149324d5174aSHong Zhang        0,
1494d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
149524d5174aSHong Zhang        0,
149697304618SKris Buschelman        0,
149797304618SKris Buschelman        0,
149897304618SKris Buschelman        0,
1499d519adbfSMatthew Knepley /*74*/ 0,
150097304618SKris Buschelman        0,
150197304618SKris Buschelman        0,
150297304618SKris Buschelman        0,
150397304618SKris Buschelman        0,
1504d519adbfSMatthew Knepley /*79*/ 0,
150597304618SKris Buschelman        0,
150697304618SKris Buschelman        0,
150797304618SKris Buschelman        0,
15085bba2384SShri Abhyankar        MatLoad_MPISBAIJ,
1509d519adbfSMatthew Knepley /*84*/ 0,
1510865e5f61SKris Buschelman        0,
1511865e5f61SKris Buschelman        0,
1512865e5f61SKris Buschelman        0,
1513865e5f61SKris Buschelman        0,
1514d519adbfSMatthew Knepley /*89*/ 0,
1515865e5f61SKris Buschelman        0,
1516865e5f61SKris Buschelman        0,
1517865e5f61SKris Buschelman        0,
1518865e5f61SKris Buschelman        0,
1519d519adbfSMatthew Knepley /*94*/ 0,
1520865e5f61SKris Buschelman        0,
1521865e5f61SKris Buschelman        0,
152299cafbc1SBarry Smith        0,
152399cafbc1SBarry Smith        0,
1524d519adbfSMatthew Knepley /*99*/ 0,
152599cafbc1SBarry Smith        0,
152699cafbc1SBarry Smith        0,
152799cafbc1SBarry Smith        0,
152899cafbc1SBarry Smith        0,
1529d519adbfSMatthew Knepley /*104*/0,
153099cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1531d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1532d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
153395936485SShri Abhyankar        MatRestoreRowUpperTriangular_MPISBAIJ,
153495936485SShri Abhyankar /*109*/0,
153595936485SShri Abhyankar        0,
153695936485SShri Abhyankar        0,
153795936485SShri Abhyankar        0,
153895936485SShri Abhyankar        0,
153995936485SShri Abhyankar /*114*/0,
154095936485SShri Abhyankar        0,
154195936485SShri Abhyankar        0,
154295936485SShri Abhyankar        0,
154395936485SShri Abhyankar        0,
154495936485SShri Abhyankar /*119*/0,
154595936485SShri Abhyankar        0,
154695936485SShri Abhyankar        0,
15475bba2384SShri Abhyankar        0
154899cafbc1SBarry Smith };
1549a30f8f8cSSatish Balay 
1550a30f8f8cSSatish Balay 
1551a30f8f8cSSatish Balay EXTERN_C_BEGIN
15524a2ae208SSatish Balay #undef __FUNCT__
15534a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
155411bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1555a30f8f8cSSatish Balay {
1556a30f8f8cSSatish Balay   PetscFunctionBegin;
1557a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ *)A->data)->A;
1558a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1559a30f8f8cSSatish Balay }
1560a30f8f8cSSatish Balay EXTERN_C_END
1561a30f8f8cSSatish Balay 
1562273d9f13SBarry Smith EXTERN_C_BEGIN
15634a2ae208SSatish Balay #undef __FUNCT__
1564a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
15657087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1566a23d5eceSKris Buschelman {
1567a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1568dfbe8321SBarry Smith   PetscErrorCode ierr;
1569535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1570a23d5eceSKris Buschelman 
1571a23d5eceSKris Buschelman   PetscFunctionBegin;
1572a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1573a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1574e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1575e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1576899cda47SBarry Smith 
1577535b19f3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1578535b19f3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
157926283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
158026283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1581e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1582899cda47SBarry Smith 
1583a23d5eceSKris Buschelman   if (d_nnz) {
1584d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1585e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1586a23d5eceSKris Buschelman     }
1587a23d5eceSKris Buschelman   }
1588a23d5eceSKris Buschelman   if (o_nnz) {
1589d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1590e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1591a23d5eceSKris Buschelman     }
1592a23d5eceSKris Buschelman   }
1593a23d5eceSKris Buschelman 
1594a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1595d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1596d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1597c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1598a23d5eceSKris Buschelman 
1599d0f46423SBarry Smith   B->rmap->bs  = bs;
1600a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1601a23d5eceSKris Buschelman   b->mbs = mbs;
1602a23d5eceSKris Buschelman   b->nbs = mbs;
1603a23d5eceSKris Buschelman   b->Mbs = Mbs;
1604a23d5eceSKris Buschelman   b->Nbs = Mbs;
1605a23d5eceSKris Buschelman 
1606a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1607d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1608a23d5eceSKris Buschelman   }
1609d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1610d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1611a23d5eceSKris Buschelman 
1612d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1613d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1614a23d5eceSKris Buschelman 
1615526dfc15SBarry Smith   if (!B->preallocated) {
1616f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1617d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16189c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
161952e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1620f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1621d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16224aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
162352e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
162415bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1625526dfc15SBarry Smith   }
1626a23d5eceSKris Buschelman 
1627526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1628526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1629526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1630a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1631a23d5eceSKris Buschelman }
1632a23d5eceSKris Buschelman EXTERN_C_END
1633a23d5eceSKris Buschelman 
16345c9eb25fSBarry Smith EXTERN_C_BEGIN
1635dfb205c3SBarry Smith #undef __FUNCT__
1636dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1637dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1638dfb205c3SBarry Smith {
1639dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1640dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1641dfb205c3SBarry Smith   const PetscInt *JJ=0;
1642dfb205c3SBarry Smith   PetscScalar    *values=0;
1643dfb205c3SBarry Smith   PetscErrorCode ierr;
1644dfb205c3SBarry Smith 
1645dfb205c3SBarry Smith   PetscFunctionBegin;
1646dfb205c3SBarry Smith 
1647dfb205c3SBarry Smith   if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1648dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1649dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1650dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1651dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1652e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1653dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1654dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1655dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1656dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1657dfb205c3SBarry Smith 
1658dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1659dfb205c3SBarry Smith   ierr  = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
1660dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1661dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1662dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1663dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1664dfb205c3SBarry Smith     JJ  = jj + ii[i];
1665dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1666dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1667dfb205c3SBarry Smith       JJ++;
1668dfb205c3SBarry Smith     }
1669dfb205c3SBarry Smith     d = 0;
1670dfb205c3SBarry Smith     for (; j<nz; j++) {
1671dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1672dfb205c3SBarry Smith       d++;
1673dfb205c3SBarry Smith     }
1674dfb205c3SBarry Smith     d_nnz[i] = d;
1675dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1676dfb205c3SBarry Smith   }
1677dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1678dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1679dfb205c3SBarry Smith 
1680dfb205c3SBarry Smith   values = (PetscScalar*)V;
1681dfb205c3SBarry Smith   if (!values) {
1682dfb205c3SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
1683dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1684dfb205c3SBarry Smith   }
1685dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1686dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1687dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1688dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1689dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1690dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1691dfb205c3SBarry Smith   }
1692dfb205c3SBarry Smith 
1693dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1694dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1695dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16967827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1697dfb205c3SBarry Smith   PetscFunctionReturn(0);
1698dfb205c3SBarry Smith }
1699dfb205c3SBarry Smith EXTERN_C_END
1700dfb205c3SBarry Smith 
1701dfb205c3SBarry Smith EXTERN_C_BEGIN
1702611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
17037087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1704611f576cSBarry Smith #endif
1705611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
17067087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1707611f576cSBarry Smith #endif
1708b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1709b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1710b5e56a35SBarry Smith #endif
17115c9eb25fSBarry Smith EXTERN_C_END
17125c9eb25fSBarry Smith 
17130bad9183SKris Buschelman /*MC
1714fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1715828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1716828413b8SBarry Smith    the matrix is stored.
1717828413b8SBarry Smith 
1718828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1719828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17200bad9183SKris Buschelman 
17210bad9183SKris Buschelman    Options Database Keys:
17220bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17230bad9183SKris Buschelman 
17240bad9183SKris Buschelman   Level: beginner
17250bad9183SKris Buschelman 
17260bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17270bad9183SKris Buschelman M*/
17280bad9183SKris Buschelman 
1729a23d5eceSKris Buschelman EXTERN_C_BEGIN
1730aa5a9175SDahai Guo extern PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,const MatType,MatReuse,Mat*);
1731aa5a9175SDahai Guo EXTERN_C_END
1732aa5a9175SDahai Guo 
1733aa5a9175SDahai Guo EXTERN_C_BEGIN
1734a23d5eceSKris Buschelman #undef __FUNCT__
17354a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17367087cfbeSBarry Smith PetscErrorCode  MatCreate_MPISBAIJ(Mat B)
1737b5df2d14SHong Zhang {
1738b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1739dfbe8321SBarry Smith   PetscErrorCode ierr;
1740ace3abfcSBarry Smith   PetscBool      flg;
1741b5df2d14SHong Zhang 
1742b5df2d14SHong Zhang   PetscFunctionBegin;
1743b5df2d14SHong Zhang 
174438f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1745b0a32e0cSBarry Smith   B->data = (void*)b;
1746b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1747b5df2d14SHong Zhang 
1748b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1749b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1750b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1751b5df2d14SHong Zhang 
1752b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
17537adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
17547adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1755b5df2d14SHong Zhang 
1756b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1757899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1758b5df2d14SHong Zhang 
1759b5df2d14SHong Zhang   /* build cache for off array entries formed */
17607adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1761b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1762b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1763b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1764b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1765b5df2d14SHong Zhang 
1766b5df2d14SHong Zhang   /* stuff used in block assembly */
1767b5df2d14SHong Zhang   b->barray       = 0;
1768b5df2d14SHong Zhang 
1769b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1770b5df2d14SHong Zhang   b->lvec         = 0;
1771b5df2d14SHong Zhang   b->Mvctx        = 0;
177240781036SHong Zhang   b->slvec0       = 0;
177340781036SHong Zhang   b->slvec0b      = 0;
177440781036SHong Zhang   b->slvec1       = 0;
177540781036SHong Zhang   b->slvec1a      = 0;
177640781036SHong Zhang   b->slvec1b      = 0;
177740781036SHong Zhang   b->sMvctx       = 0;
1778b5df2d14SHong Zhang 
1779b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1780b5df2d14SHong Zhang   b->rowindices   = 0;
1781b5df2d14SHong Zhang   b->rowvalues    = 0;
1782b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1783b5df2d14SHong Zhang 
1784b5df2d14SHong Zhang   /* hash table stuff */
1785b5df2d14SHong Zhang   b->ht           = 0;
1786b5df2d14SHong Zhang   b->hd           = 0;
1787b5df2d14SHong Zhang   b->ht_size      = 0;
1788b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1789b5df2d14SHong Zhang   b->ht_fact      = 0;
1790b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1791b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1792b5df2d14SHong Zhang 
17937a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
17947a868f3eSHong Zhang   b->ijonly       = PETSC_FALSE;
17957a868f3eSHong Zhang 
179659ffdab8SBarry Smith   b->in_loc       = 0;
179759ffdab8SBarry Smith   b->v_loc        = 0;
179859ffdab8SBarry Smith   b->n_loc        = 0;
17997adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
1800acfcf0e5SJed Brown     ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1801b5df2d14SHong Zhang     if (flg) {
1802f6275e2eSBarry Smith       PetscReal fact = 1.39;
18034e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
18048c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1805b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1806b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
18071e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1808b5df2d14SHong Zhang     }
18098c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
18108c07d4e3SBarry Smith 
1811b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1812ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1813b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1814b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1815b5e56a35SBarry Smith #endif
1816611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1817ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
1818bccb9932SShri Abhyankar                                      "MatGetFactor_sbaij_mumps",
1819bccb9932SShri Abhyankar                                      MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1820611f576cSBarry Smith #endif
1821611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1822ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
18235c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
18245c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1825611f576cSBarry Smith #endif
1826b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1827b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1828b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1829b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1830b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1831b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1832b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1833b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1834b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1835a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1836a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1837a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1838dfb205c3SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",
1839dfb205c3SBarry Smith                                      "MatMPISBAIJSetPreallocationCSR_MPISBAIJ",
1840dfb205c3SBarry Smith                                      MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1841aa5a9175SDahai Guo   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",
1842aa5a9175SDahai Guo                                      "MatConvert_MPISBAIJ_MPISBSTRM",
1843aa5a9175SDahai Guo                                       MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
1844aa5a9175SDahai Guo 
184523ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
184623ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
184723ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
184823ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
184917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1850b5df2d14SHong Zhang   PetscFunctionReturn(0);
1851b5df2d14SHong Zhang }
1852273d9f13SBarry Smith EXTERN_C_END
1853b5df2d14SHong Zhang 
1854209238afSKris Buschelman /*MC
1855002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1856209238afSKris Buschelman 
1857209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1858209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1859209238afSKris Buschelman 
1860209238afSKris Buschelman    Options Database Keys:
1861209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1862209238afSKris Buschelman 
1863209238afSKris Buschelman   Level: beginner
1864209238afSKris Buschelman 
1865209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1866209238afSKris Buschelman M*/
1867209238afSKris Buschelman 
18684a2ae208SSatish Balay #undef __FUNCT__
18694a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1870b5df2d14SHong Zhang /*@C
1871b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1872b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1873b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1874b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1875b5df2d14SHong Zhang 
1876b5df2d14SHong Zhang    Collective on Mat
1877b5df2d14SHong Zhang 
1878b5df2d14SHong Zhang    Input Parameters:
1879b5df2d14SHong Zhang +  A - the matrix
1880b5df2d14SHong Zhang .  bs   - size of blockk
1881b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1882b5df2d14SHong Zhang            submatrix  (same for all local rows)
1883b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18846d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
188595742e49SBarry Smith            (possibly different for each block row) or PETSC_NULL.  If you plan to factor the matrix you must leave room
188695742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1887b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1888b5df2d14SHong Zhang            submatrix (same for all local rows).
1889b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1890c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
1891c2fc9fa9SBarry Smith            (possibly different for each block row) or PETSC_NULL.
1892b5df2d14SHong Zhang 
1893b5df2d14SHong Zhang 
1894b5df2d14SHong Zhang    Options Database Keys:
1895b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1896b5df2d14SHong Zhang                      block calculations (much slower)
1897b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1898b5df2d14SHong Zhang 
1899b5df2d14SHong Zhang    Notes:
1900b5df2d14SHong Zhang 
1901b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1902b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1903b5df2d14SHong Zhang 
190449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
190549a6f317SBarry Smith 
1906b5df2d14SHong Zhang    Storage Information:
1907b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1908b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1909b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1910b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1911b5df2d14SHong Zhang 
1912b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1913b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1914b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1915b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1916b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1917b5df2d14SHong Zhang 
1918aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1919aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1920aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1921aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1922aa95bbe8SBarry Smith 
1923b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1924b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1925b5df2d14SHong Zhang 
1926b5df2d14SHong Zhang .vb
1927b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1928b5df2d14SHong Zhang           -------------------
1929c2fc9fa9SBarry Smith    row 3  |  . . . d d d o o o o o o
1930c2fc9fa9SBarry Smith    row 4  |  . . . d d d o o o o o o
1931c2fc9fa9SBarry Smith    row 5  |  . . . d d d o o o o o o
1932b5df2d14SHong Zhang           -------------------
1933b5df2d14SHong Zhang .ve
1934b5df2d14SHong Zhang 
1935b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1936b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19376d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19386d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1939b5df2d14SHong Zhang 
19406d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19416d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1942c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
1943c2fc9fa9SBarry Smith 
1944b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1945b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1946b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1947b5df2d14SHong Zhang    matrices.
1948b5df2d14SHong Zhang 
1949b5df2d14SHong Zhang    Level: intermediate
1950b5df2d14SHong Zhang 
1951b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1952b5df2d14SHong Zhang 
195369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
1954b5df2d14SHong Zhang @*/
19557087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1956b5df2d14SHong Zhang {
19574ac538c5SBarry Smith   PetscErrorCode ierr;
1958b5df2d14SHong Zhang 
1959b5df2d14SHong Zhang   PetscFunctionBegin;
19606ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
19616ba663aaSJed Brown   PetscValidType(B,1);
19626ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
19634ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1964b5df2d14SHong Zhang   PetscFunctionReturn(0);
1965b5df2d14SHong Zhang }
1966b5df2d14SHong Zhang 
19674a2ae208SSatish Balay #undef __FUNCT__
196869b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
1969a30f8f8cSSatish Balay /*@C
197069b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1971a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1972a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1973a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1974a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1975a30f8f8cSSatish Balay 
1976a30f8f8cSSatish Balay    Collective on MPI_Comm
1977a30f8f8cSSatish Balay 
1978a30f8f8cSSatish Balay    Input Parameters:
1979a30f8f8cSSatish Balay +  comm - MPI communicator
1980a30f8f8cSSatish Balay .  bs   - size of blockk
1981a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1982a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1983a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1984a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1985a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1986a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1987a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1988a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1989a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1990a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1991a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19926d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19936d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
199495742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
199595742e49SBarry Smith            set its value even if it is zero.
1996a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1997a30f8f8cSSatish Balay            submatrix (same for all local rows).
1998a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1999a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
2000a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
2001a30f8f8cSSatish Balay 
2002a30f8f8cSSatish Balay    Output Parameter:
2003a30f8f8cSSatish Balay .  A - the matrix
2004a30f8f8cSSatish Balay 
2005a30f8f8cSSatish Balay    Options Database Keys:
2006a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2007a30f8f8cSSatish Balay                      block calculations (much slower)
2008a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2009a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2010a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2011a30f8f8cSSatish Balay 
2012175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2013ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2014175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2015175b88e8SBarry Smith 
2016a30f8f8cSSatish Balay    Notes:
2017d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20186d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2019d1be2dadSMatthew Knepley 
2020a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2021a30f8f8cSSatish Balay    (possibly both).
2022a30f8f8cSSatish Balay 
2023a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2024a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2025a30f8f8cSSatish Balay 
202649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
202749a6f317SBarry Smith 
2028a30f8f8cSSatish Balay    Storage Information:
2029a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2030a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2031a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2032a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2033a30f8f8cSSatish Balay 
2034a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2035a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
2036a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2037a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2038a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2039a30f8f8cSSatish Balay 
2040a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2041a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2042a30f8f8cSSatish Balay 
2043a30f8f8cSSatish Balay .vb
2044a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2045a30f8f8cSSatish Balay           -------------------
2046c2fc9fa9SBarry Smith    row 3  |  . . . d d d o o o o o o
2047c2fc9fa9SBarry Smith    row 4  |  . . . d d d o o o o o o
2048c2fc9fa9SBarry Smith    row 5  |  . . . d d d o o o o o o
2049a30f8f8cSSatish Balay           -------------------
2050a30f8f8cSSatish Balay .ve
2051a30f8f8cSSatish Balay 
2052a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2053a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20546d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20556d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2056a30f8f8cSSatish Balay 
20576d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20586d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2059a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2060a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2061a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2062a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2063a30f8f8cSSatish Balay    matrices.
2064a30f8f8cSSatish Balay 
2065a30f8f8cSSatish Balay    Level: intermediate
2066a30f8f8cSSatish Balay 
2067a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2068a30f8f8cSSatish Balay 
206969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2070a30f8f8cSSatish Balay @*/
2071a30f8f8cSSatish Balay 
207269b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2073a30f8f8cSSatish Balay {
20746849ba73SBarry Smith   PetscErrorCode ierr;
20751302d50aSBarry Smith   PetscMPIInt    size;
2076a30f8f8cSSatish Balay 
2077a30f8f8cSSatish Balay   PetscFunctionBegin;
2078f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2079f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2080273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2081273d9f13SBarry Smith   if (size > 1) {
2082b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2083b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2084273d9f13SBarry Smith   } else {
2085273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2086273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2087273d9f13SBarry Smith   }
2088a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2089a30f8f8cSSatish Balay }
2090a30f8f8cSSatish Balay 
2091a30f8f8cSSatish Balay 
20924a2ae208SSatish Balay #undef __FUNCT__
20934a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20946849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2095a30f8f8cSSatish Balay {
2096a30f8f8cSSatish Balay   Mat            mat;
2097a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2098dfbe8321SBarry Smith   PetscErrorCode ierr;
2099d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2100387bc808SHong Zhang   PetscScalar    *array;
2101a30f8f8cSSatish Balay 
2102a30f8f8cSSatish Balay   PetscFunctionBegin;
2103a30f8f8cSSatish Balay   *newmat       = 0;
21047adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2105d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
21067adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
21071d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
21081e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
21091e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2110e1b6402fSHong Zhang 
2111d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2112273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
211382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21147fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21157fff6886SHong Zhang 
2116b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2117a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2118a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2119a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2120a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2121a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2122a30f8f8cSSatish Balay 
2123899cda47SBarry Smith 
2124a30f8f8cSSatish Balay   a->size         = oldmat->size;
2125a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2126a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2127a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2128a30f8f8cSSatish Balay   a->rowindices   = 0;
2129a30f8f8cSSatish Balay   a->rowvalues    = 0;
2130a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2131a30f8f8cSSatish Balay   a->barray       = 0;
2132899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2133899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2134899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2135899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2136a30f8f8cSSatish Balay 
2137a30f8f8cSSatish Balay   /* hash table stuff */
2138a30f8f8cSSatish Balay   a->ht           = 0;
2139a30f8f8cSSatish Balay   a->hd           = 0;
2140a30f8f8cSSatish Balay   a->ht_size      = 0;
2141a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2142a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2143a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2144a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2145a30f8f8cSSatish Balay 
2146899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2147a30f8f8cSSatish Balay   if (oldmat->colmap) {
2148a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2149a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2150a30f8f8cSSatish Balay #else
21511302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
215252e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21531302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2154a30f8f8cSSatish Balay #endif
2155a30f8f8cSSatish Balay   } else a->colmap = 0;
2156387bc808SHong Zhang 
2157a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21581302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
215952e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21601302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2161a30f8f8cSSatish Balay   } else a->garray = 0;
2162a30f8f8cSSatish Balay 
2163533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2164a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
216552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2166a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
216752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
216882327fa8SHong Zhang 
216982327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
217052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
217182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
217252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2173387bc808SHong Zhang 
2174387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21751ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2176778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2177778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21781ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21791ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2180778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21811ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
218252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
218352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
218452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
218552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
218652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2187387bc808SHong Zhang 
2188387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2189387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2190387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
219152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
219282327fa8SHong Zhang 
2193a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
219452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2195a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
219652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21977adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2198a30f8f8cSSatish Balay   *newmat = mat;
2199a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2200a30f8f8cSSatish Balay }
2201a30f8f8cSSatish Balay 
22024a2ae208SSatish Balay #undef __FUNCT__
22035bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2204112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
220595936485SShri Abhyankar {
220695936485SShri Abhyankar   PetscErrorCode ierr;
220795936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
220895936485SShri Abhyankar   PetscScalar    *vals,*buf;
220995936485SShri Abhyankar   MPI_Comm       comm = ((PetscObject)viewer)->comm;
221095936485SShri Abhyankar   MPI_Status     status;
221195936485SShri Abhyankar   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
221295936485SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
221395936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
221495936485SShri Abhyankar   PetscInt       bs=1,Mbs,mbs,extra_rows;
221595936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
221695936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
221795936485SShri Abhyankar   int            fd;
221895936485SShri Abhyankar 
221995936485SShri Abhyankar   PetscFunctionBegin;
222095936485SShri Abhyankar   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
222195936485SShri Abhyankar     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
222295936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
222395936485SShri Abhyankar 
222495936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
222595936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
222695936485SShri Abhyankar   if (!rank) {
222795936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
222895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
222995936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
223095936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
223195936485SShri Abhyankar   }
223295936485SShri Abhyankar 
223395936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
223495936485SShri Abhyankar 
223595936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
223695936485SShri Abhyankar   M = header[1]; N = header[2];
223795936485SShri Abhyankar 
223895936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
223995936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
224095936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
224195936485SShri Abhyankar 
224295936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
224395936485SShri Abhyankar   if (sizesset) {
224495936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
224595936485SShri Abhyankar   }
2246abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2247abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
224895936485SShri Abhyankar 
224995936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
225095936485SShri Abhyankar 
225195936485SShri Abhyankar   /*
225295936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
225395936485SShri Abhyankar      divisible by the blocksize
225495936485SShri Abhyankar   */
225595936485SShri Abhyankar   Mbs        = M/bs;
225695936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
225795936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
225895936485SShri Abhyankar   else                  Mbs++;
225995936485SShri Abhyankar   if (extra_rows &&!rank) {
226095936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
226195936485SShri Abhyankar   }
226295936485SShri Abhyankar 
226395936485SShri Abhyankar   /* determine ownership of all rows */
226495936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
226595936485SShri Abhyankar     mbs        = Mbs/size + ((Mbs % size) > rank);
226695936485SShri Abhyankar     m          = mbs*bs;
226795936485SShri Abhyankar   } else { /* User Set */
226895936485SShri Abhyankar     m          = newmat->rmap->n;
226995936485SShri Abhyankar     mbs        = m/bs;
227095936485SShri Abhyankar   }
227195936485SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
227295936485SShri Abhyankar   mmbs       = PetscMPIIntCast(mbs);
227395936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
227495936485SShri Abhyankar   rowners[0] = 0;
227595936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
227695936485SShri Abhyankar   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
227795936485SShri Abhyankar   rstart = rowners[rank];
227895936485SShri Abhyankar   rend   = rowners[rank+1];
227995936485SShri Abhyankar 
228095936485SShri Abhyankar   /* distribute row lengths to all processors */
228195936485SShri Abhyankar   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
228295936485SShri Abhyankar   if (!rank) {
228395936485SShri Abhyankar     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
228495936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
228595936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
228695936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
228795936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
228895936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
228995936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
229095936485SShri Abhyankar   } else {
229195936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
229295936485SShri Abhyankar   }
229395936485SShri Abhyankar 
229495936485SShri Abhyankar   if (!rank) {   /* procs[0] */
229595936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
229695936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
229795936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
229895936485SShri Abhyankar     for (i=0; i<size; i++) {
229995936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
230095936485SShri Abhyankar         procsnz[i] += rowlengths[j];
230195936485SShri Abhyankar       }
230295936485SShri Abhyankar     }
230395936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
230495936485SShri Abhyankar 
230595936485SShri Abhyankar     /* determine max buffer needed and allocate it */
230695936485SShri Abhyankar     maxnz = 0;
230795936485SShri Abhyankar     for (i=0; i<size; i++) {
230895936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
230995936485SShri Abhyankar     }
231095936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
231195936485SShri Abhyankar 
231295936485SShri Abhyankar     /* read in my part of the matrix column indices  */
231395936485SShri Abhyankar     nz     = procsnz[0];
231495936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
231595936485SShri Abhyankar     mycols = ibuf;
231695936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
231795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
231895936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
231995936485SShri Abhyankar 
232095936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
232195936485SShri Abhyankar     for (i=1; i<size-1; i++) {
232295936485SShri Abhyankar       nz   = procsnz[i];
232395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
232495936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
232595936485SShri Abhyankar     }
232695936485SShri Abhyankar     /* read in the stuff for the last proc */
232795936485SShri Abhyankar     if (size != 1) {
232895936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
232995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
233095936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
233195936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
233295936485SShri Abhyankar     }
233395936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
233495936485SShri Abhyankar   } else {  /* procs[i], i>0 */
233595936485SShri Abhyankar     /* determine buffer space needed for message */
233695936485SShri Abhyankar     nz = 0;
233795936485SShri Abhyankar     for (i=0; i<m; i++) {
233895936485SShri Abhyankar       nz += locrowlens[i];
233995936485SShri Abhyankar     }
234095936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
234195936485SShri Abhyankar     mycols = ibuf;
234295936485SShri Abhyankar     /* receive message of column indices*/
234395936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
234495936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
234595936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
234695936485SShri Abhyankar   }
234795936485SShri Abhyankar 
234895936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
234995936485SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
235095936485SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
235195936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
235295936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
235395936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
235495936485SShri Abhyankar   rowcount = 0;
235595936485SShri Abhyankar   nzcount  = 0;
235695936485SShri Abhyankar   for (i=0; i<mbs; i++) {
235795936485SShri Abhyankar     dcount  = 0;
235895936485SShri Abhyankar     odcount = 0;
235995936485SShri Abhyankar     for (j=0; j<bs; j++) {
236095936485SShri Abhyankar       kmax = locrowlens[rowcount];
236195936485SShri Abhyankar       for (k=0; k<kmax; k++) {
236295936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
236395936485SShri Abhyankar         if (!mask[tmp]) {
236495936485SShri Abhyankar           mask[tmp] = 1;
236595936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
236695936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
236795936485SShri Abhyankar         }
236895936485SShri Abhyankar       }
236995936485SShri Abhyankar       rowcount++;
237095936485SShri Abhyankar     }
237195936485SShri Abhyankar 
237295936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
237395936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
237495936485SShri Abhyankar 
237595936485SShri Abhyankar     /* zero out the mask elements we set */
237695936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
237795936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
237895936485SShri Abhyankar   }
237995936485SShri Abhyankar     if (!sizesset) {
238095936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
238195936485SShri Abhyankar   }
238295936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
23836816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
238495936485SShri Abhyankar 
238595936485SShri Abhyankar   if (!rank) {
238695936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
238795936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
238895936485SShri Abhyankar     nz = procsnz[0];
238995936485SShri Abhyankar     vals = buf;
239095936485SShri Abhyankar     mycols = ibuf;
239195936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
239295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
239395936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
239495936485SShri Abhyankar 
239595936485SShri Abhyankar     /* insert into matrix */
239695936485SShri Abhyankar     jj      = rstart*bs;
239795936485SShri Abhyankar     for (i=0; i<m; i++) {
239895936485SShri Abhyankar       ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
239995936485SShri Abhyankar       mycols += locrowlens[i];
240095936485SShri Abhyankar       vals   += locrowlens[i];
240195936485SShri Abhyankar       jj++;
240295936485SShri Abhyankar     }
240395936485SShri Abhyankar 
240495936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
240595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
240695936485SShri Abhyankar       nz   = procsnz[i];
240795936485SShri Abhyankar       vals = buf;
240895936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
240995936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
241095936485SShri Abhyankar     }
241195936485SShri Abhyankar     /* the last proc */
241295936485SShri Abhyankar     if (size != 1){
241395936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
241495936485SShri Abhyankar       vals = buf;
241595936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
241695936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
241795936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
241895936485SShri Abhyankar     }
241995936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
242095936485SShri Abhyankar 
242195936485SShri Abhyankar   } else {
242295936485SShri Abhyankar     /* receive numeric values */
242395936485SShri Abhyankar     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
242495936485SShri Abhyankar 
242595936485SShri Abhyankar     /* receive message of values*/
242695936485SShri Abhyankar     vals   = buf;
242795936485SShri Abhyankar     mycols = ibuf;
242895936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
242995936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
243095936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
243195936485SShri Abhyankar 
243295936485SShri Abhyankar     /* insert into matrix */
243395936485SShri Abhyankar     jj      = rstart*bs;
243495936485SShri Abhyankar     for (i=0; i<m; i++) {
243595936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
243695936485SShri Abhyankar       mycols += locrowlens[i];
243795936485SShri Abhyankar       vals   += locrowlens[i];
243895936485SShri Abhyankar       jj++;
243995936485SShri Abhyankar     }
244095936485SShri Abhyankar   }
244195936485SShri Abhyankar 
244295936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
244395936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
244495936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
244595936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
244695936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
244795936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
244895936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
244995936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
245095936485SShri Abhyankar   PetscFunctionReturn(0);
245195936485SShri Abhyankar }
245295936485SShri Abhyankar 
245395936485SShri Abhyankar #undef __FUNCT__
24544a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2455dcf5cc72SBarry Smith /*XXXXX@
2456a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2457a30f8f8cSSatish Balay 
2458a30f8f8cSSatish Balay    Input Parameters:
2459a30f8f8cSSatish Balay .  mat  - the matrix
2460a30f8f8cSSatish Balay .  fact - factor
2461a30f8f8cSSatish Balay 
2462c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2463a30f8f8cSSatish Balay 
2464a30f8f8cSSatish Balay    Level: advanced
2465a30f8f8cSSatish Balay 
2466a30f8f8cSSatish Balay   Notes:
2467a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2468a30f8f8cSSatish Balay 
2469a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2470a30f8f8cSSatish Balay 
2471a30f8f8cSSatish Balay .seealso: MatSetOption()
2472dcf5cc72SBarry Smith @XXXXX*/
2473dcf5cc72SBarry Smith 
247424d5174aSHong Zhang 
24754a2ae208SSatish Balay #undef __FUNCT__
2476985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2477985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
247824d5174aSHong Zhang {
247924d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2480f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2481ca54ac64SHong Zhang   PetscReal      atmp;
248287828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2483dfbe8321SBarry Smith   PetscErrorCode ierr;
24841302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24851302d50aSBarry Smith   PetscMPIInt    rank,size;
24861302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
248787828ca2SBarry Smith   PetscScalar    *va;
24888a1c53f2SBarry Smith   MatScalar      *ba;
2489f4c0e9e4SHong Zhang   MPI_Status     stat;
249024d5174aSHong Zhang 
249124d5174aSHong Zhang   PetscFunctionBegin;
2492e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2493985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24941ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2495f4c0e9e4SHong Zhang 
24967adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24977adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2498f4c0e9e4SHong Zhang 
2499d0f46423SBarry Smith   bs   = A->rmap->bs;
2500f4c0e9e4SHong Zhang   mbs  = a->mbs;
2501f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2502f4c0e9e4SHong Zhang   ba   = b->a;
2503f4c0e9e4SHong Zhang   bi   = b->i;
2504f4c0e9e4SHong Zhang   bj   = b->j;
2505f4c0e9e4SHong Zhang 
2506f4c0e9e4SHong Zhang   /* find ownerships */
2507d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2508f4c0e9e4SHong Zhang 
2509f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
251082502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2511ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2512f4c0e9e4SHong Zhang 
2513f4c0e9e4SHong Zhang   /* row_max for B */
2514b8475685SHong Zhang   if (rank != size-1){
2515f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2516f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2517f4c0e9e4SHong Zhang       brow  = bs*i;
2518f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2519f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2520f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2521ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
252204d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2523f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2524f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2525ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2526ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2527f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2528f4c0e9e4SHong Zhang           }
2529f4c0e9e4SHong Zhang         }
2530f4c0e9e4SHong Zhang         bj++;
2531f4c0e9e4SHong Zhang       }
2532f4c0e9e4SHong Zhang     }
2533f4c0e9e4SHong Zhang 
2534f4c0e9e4SHong Zhang     /* send values to its owners */
2535f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2536f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2537ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
25387adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2539ca54ac64SHong Zhang     }
2540f4c0e9e4SHong Zhang   }
2541f4c0e9e4SHong Zhang 
2542f4c0e9e4SHong Zhang   /* receive values */
2543ca54ac64SHong Zhang   if (rank){
2544f4c0e9e4SHong Zhang     rvalues = work;
2545ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2546f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
25477adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2548f4c0e9e4SHong Zhang       /* process values */
2549f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2550ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2551f4c0e9e4SHong Zhang       }
2552f4c0e9e4SHong Zhang     }
2553ca54ac64SHong Zhang   }
2554f4c0e9e4SHong Zhang 
25551ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2556ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
255724d5174aSHong Zhang   PetscFunctionReturn(0);
255824d5174aSHong Zhang }
25592798e883SHong Zhang 
25602798e883SHong Zhang #undef __FUNCT__
256141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
256241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25632798e883SHong Zhang {
25642798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2565dfbe8321SBarry Smith   PetscErrorCode    ierr;
2566d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25673649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2568ffe4fb16SHong Zhang   Vec               bb1;
25693649974fSBarry Smith   const PetscScalar *b;
2570ffe4fb16SHong Zhang 
2571ffe4fb16SHong Zhang   PetscFunctionBegin;
2572e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2573e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2574ffe4fb16SHong Zhang 
2575a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
257641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2577a2b30743SBarry Smith     PetscFunctionReturn(0);
2578a2b30743SBarry Smith   }
2579a2b30743SBarry Smith 
2580ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2581ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
258241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2583ffe4fb16SHong Zhang       its--;
2584ffe4fb16SHong Zhang     }
2585ffe4fb16SHong Zhang 
2586ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2587ffe4fb16SHong Zhang     while (its--){
2588ffe4fb16SHong Zhang 
2589ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2590ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2591ffe4fb16SHong Zhang 
2592ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25931ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25941ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2595ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25961ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2597ffe4fb16SHong Zhang 
2598efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2599ffe4fb16SHong Zhang 
2600ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26011ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
26023649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2603ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26041ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2605ffe4fb16SHong Zhang 
2606ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2607fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2608ffe4fb16SHong Zhang 
2609ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26101ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2611a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2612ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2613ffe4fb16SHong Zhang 
2614ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2615ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2616ffe4fb16SHong Zhang 
2617ffe4fb16SHong Zhang       /* local diagonal sweep */
261841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2619ffe4fb16SHong Zhang     }
26206bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2621fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
262241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2623fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
262441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2625fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2626fa22f6d0SBarry Smith     Vec               xx1;
2627ace3abfcSBarry Smith     PetscBool         hasop;
262820f1ed55SBarry Smith     const PetscScalar *diag;
2629887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
263020f1ed55SBarry Smith     PetscInt          i,n;
2631fa22f6d0SBarry Smith 
2632fa22f6d0SBarry Smith     if (!mat->xx1) {
2633fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2634fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2635fa22f6d0SBarry Smith     }
2636fa22f6d0SBarry Smith     xx1 = mat->xx1;
2637fa22f6d0SBarry Smith     bb1 = mat->bb1;
2638fa22f6d0SBarry Smith 
263941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2640fa22f6d0SBarry Smith 
2641fa22f6d0SBarry Smith     if (!mat->diag) {
2642effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2643fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2644fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2645fa22f6d0SBarry Smith     }
2646fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2647fa22f6d0SBarry Smith 
2648fa22f6d0SBarry Smith     if (hasop) {
2649fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2650887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
265120f1ed55SBarry Smith     } else {
265220f1ed55SBarry Smith       /*
265320f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
265420f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2655887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
265620f1ed55SBarry Smith       */
265720f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26583649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26593649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
266020f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
266120f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2662887ee2caSBarry Smith       if (omega == 1.0) {
266320f1ed55SBarry Smith 	for (i=0; i<n; i++) {
266420f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
266520f1ed55SBarry Smith 	}
266620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2667887ee2caSBarry Smith       } else {
2668887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2669887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2670887ee2caSBarry Smith 	}
2671887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2672887ee2caSBarry Smith       }
267320f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26743649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26753649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
267620f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
267720f1ed55SBarry Smith     }
2678fa22f6d0SBarry Smith 
2679fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2680fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2681fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2682fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2683fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2684fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2685fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2686fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2687fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2688fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2689effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2690fa22f6d0SBarry Smith 
2691fa22f6d0SBarry Smith     /* local sweep */
269241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2693fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2694ffe4fb16SHong Zhang   } else {
2695e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2696ffe4fb16SHong Zhang   }
2697ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2698ffe4fb16SHong Zhang }
2699ffe4fb16SHong Zhang 
2700ffe4fb16SHong Zhang #undef __FUNCT__
270141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
270241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2703ffe4fb16SHong Zhang {
2704ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2705dfbe8321SBarry Smith   PetscErrorCode ierr;
27062798e883SHong Zhang   Vec            lvec1,bb1;
27072798e883SHong Zhang 
27082798e883SHong Zhang   PetscFunctionBegin;
2709e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2710e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27112798e883SHong Zhang 
2712c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
27132798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
271441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27152798e883SHong Zhang       its--;
27162798e883SHong Zhang     }
27172798e883SHong Zhang 
27182798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27192798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27202798e883SHong Zhang     while (its--){
2721ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27222798e883SHong Zhang 
27232798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27242798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2725efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27262798e883SHong Zhang 
2727ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27282798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2729ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27302798e883SHong Zhang 
27312798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2732efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27332798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27342798e883SHong Zhang 
2735ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27362798e883SHong Zhang 
2737c14dc6b6SHong Zhang       /* diagonal sweep */
273841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27392798e883SHong Zhang     }
27406bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27416bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27426bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27432798e883SHong Zhang   PetscFunctionReturn(0);
27442798e883SHong Zhang }
27452798e883SHong Zhang 
2746dfb205c3SBarry Smith #undef __FUNCT__
2747dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2748dfb205c3SBarry Smith /*@
2749dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2750dfb205c3SBarry Smith          CSR format the local rows.
2751dfb205c3SBarry Smith 
2752dfb205c3SBarry Smith    Collective on MPI_Comm
2753dfb205c3SBarry Smith 
2754dfb205c3SBarry Smith    Input Parameters:
2755dfb205c3SBarry Smith +  comm - MPI communicator
2756dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2757dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2758dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2759dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2760dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2761dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2762dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2763dfb205c3SBarry Smith .   i - row indices
2764dfb205c3SBarry Smith .   j - column indices
2765dfb205c3SBarry Smith -   a - matrix values
2766dfb205c3SBarry Smith 
2767dfb205c3SBarry Smith    Output Parameter:
2768dfb205c3SBarry Smith .   mat - the matrix
2769dfb205c3SBarry Smith 
2770dfb205c3SBarry Smith    Level: intermediate
2771dfb205c3SBarry Smith 
2772dfb205c3SBarry Smith    Notes:
2773dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2774dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2775dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2776dfb205c3SBarry Smith 
2777dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2778dfb205c3SBarry Smith 
2779dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2780dfb205c3SBarry Smith 
2781dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
278269b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2783dfb205c3SBarry Smith @*/
27847087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2785dfb205c3SBarry Smith {
2786dfb205c3SBarry Smith   PetscErrorCode ierr;
2787dfb205c3SBarry Smith 
2788dfb205c3SBarry Smith 
2789dfb205c3SBarry Smith  PetscFunctionBegin;
2790dfb205c3SBarry Smith   if (i[0]) {
2791dfb205c3SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2792dfb205c3SBarry Smith   }
2793dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2794dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2795dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2796dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2797dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2798dfb205c3SBarry Smith   PetscFunctionReturn(0);
2799dfb205c3SBarry Smith }
2800dfb205c3SBarry Smith 
2801dfb205c3SBarry Smith 
2802dfb205c3SBarry Smith #undef __FUNCT__
2803dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2804dfb205c3SBarry Smith /*@C
2805dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2806dfb205c3SBarry Smith    (the default parallel PETSc format).
2807dfb205c3SBarry Smith 
2808dfb205c3SBarry Smith    Collective on MPI_Comm
2809dfb205c3SBarry Smith 
2810dfb205c3SBarry Smith    Input Parameters:
2811dfb205c3SBarry Smith +  A - the matrix
2812dfb205c3SBarry Smith .  bs - the block size
2813dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2814dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2815dfb205c3SBarry Smith -  v - optional values in the matrix
2816dfb205c3SBarry Smith 
2817dfb205c3SBarry Smith    Level: developer
2818dfb205c3SBarry Smith 
2819dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2820dfb205c3SBarry Smith 
282169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2822dfb205c3SBarry Smith @*/
28237087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2824dfb205c3SBarry Smith {
28254ac538c5SBarry Smith   PetscErrorCode ierr;
2826dfb205c3SBarry Smith 
2827dfb205c3SBarry Smith   PetscFunctionBegin;
28284ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2829dfb205c3SBarry Smith   PetscFunctionReturn(0);
2830dfb205c3SBarry Smith }
2831dfb205c3SBarry Smith 
2832dfb205c3SBarry Smith 
2833