1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*); 12d24d4204SJose E. Roman #endif 13b147fbf3SStefano Zampini 14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 16b147fbf3SStefano Zampini { 17b147fbf3SStefano Zampini Mat preallocator; 18b147fbf3SStefano Zampini PetscInt r,rstart,rend; 19b147fbf3SStefano Zampini PetscInt bs,i,m,n,M,N; 20b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 21b147fbf3SStefano Zampini PetscErrorCode ierr; 22b147fbf3SStefano Zampini 23b147fbf3SStefano Zampini PetscFunctionBegin; 24b147fbf3SStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 25b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B,nm,2); 26b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 27b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i],MAT_CLASSID,3); 28b147fbf3SStefano Zampini ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr); 29b147fbf3SStefano Zampini if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts"); 30b147fbf3SStefano Zampini } 31b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B,fill,5); 32b147fbf3SStefano Zampini ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr); 33b147fbf3SStefano Zampini ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr); 34b147fbf3SStefano Zampini ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr); 35b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr); 36b147fbf3SStefano Zampini ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr); 37b147fbf3SStefano Zampini ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr); 38b147fbf3SStefano Zampini ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr); 39b147fbf3SStefano Zampini ierr = MatSetUp(preallocator);CHKERRQ(ierr); 40b147fbf3SStefano Zampini ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr); 41b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 42b147fbf3SStefano Zampini PetscInt ncols; 43b147fbf3SStefano Zampini const PetscInt *row; 44b147fbf3SStefano Zampini const PetscScalar *vals; 45b147fbf3SStefano Zampini 46b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 47b147fbf3SStefano Zampini ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 48b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 49b147fbf3SStefano Zampini if (symm && symm[i]) { 50b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 51b147fbf3SStefano Zampini } 52b147fbf3SStefano Zampini ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 53b147fbf3SStefano Zampini } 54b147fbf3SStefano Zampini } 55b147fbf3SStefano Zampini ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 56b147fbf3SStefano Zampini ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 57b147fbf3SStefano Zampini ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr); 58b147fbf3SStefano Zampini ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 59b147fbf3SStefano Zampini PetscFunctionReturn(0); 60b147fbf3SStefano Zampini } 61b147fbf3SStefano Zampini 6228d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 63b147fbf3SStefano Zampini { 64b147fbf3SStefano Zampini Mat B; 65b147fbf3SStefano Zampini PetscErrorCode ierr; 66b147fbf3SStefano Zampini PetscInt r; 67b147fbf3SStefano Zampini 68b147fbf3SStefano Zampini PetscFunctionBegin; 69b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 7028d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE,isdense; 71b147fbf3SStefano Zampini PetscInt bs; 72b147fbf3SStefano Zampini 73b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 74b147fbf3SStefano Zampini ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 75b147fbf3SStefano Zampini ierr = MatSetType(B,newtype);CHKERRQ(ierr); 76b147fbf3SStefano Zampini ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr); 77b147fbf3SStefano Zampini ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr); 78b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 79b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 8028d58a37SPierre Jolivet ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 8128d58a37SPierre Jolivet if (!isdense) { 82b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 83b147fbf3SStefano Zampini ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr); 84b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 8528d58a37SPierre Jolivet } else { 8628d58a37SPierre Jolivet ierr = MatSetUp(B);CHKERRQ(ierr); 8728d58a37SPierre Jolivet } 8828d58a37SPierre Jolivet } else { 8928d58a37SPierre Jolivet B = *newmat; 9028d58a37SPierre Jolivet ierr = MatZeroEntries(B);CHKERRQ(ierr); 9128d58a37SPierre Jolivet } 92b147fbf3SStefano Zampini 93b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 94b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 95b147fbf3SStefano Zampini PetscInt ncols; 96b147fbf3SStefano Zampini const PetscInt *row; 97b147fbf3SStefano Zampini const PetscScalar *vals; 98b147fbf3SStefano Zampini 99b147fbf3SStefano Zampini ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 100b147fbf3SStefano Zampini ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 101eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 102eb1ec7c1SStefano Zampini if (A->hermitian) { 103eb1ec7c1SStefano Zampini PetscInt i; 104eb1ec7c1SStefano Zampini for (i = 0; i < ncols; i++) { 105eb1ec7c1SStefano Zampini ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr); 106eb1ec7c1SStefano Zampini } 107eb1ec7c1SStefano Zampini } else { 108b147fbf3SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 109eb1ec7c1SStefano Zampini } 110eb1ec7c1SStefano Zampini #else 111eb1ec7c1SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 112eb1ec7c1SStefano Zampini #endif 113b147fbf3SStefano Zampini ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 114b147fbf3SStefano Zampini } 115b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 116b147fbf3SStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 117b147fbf3SStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 118b147fbf3SStefano Zampini 119b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 120b147fbf3SStefano Zampini ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 121b147fbf3SStefano Zampini } else { 122b147fbf3SStefano Zampini *newmat = B; 123b147fbf3SStefano Zampini } 124b147fbf3SStefano Zampini PetscFunctionReturn(0); 125b147fbf3SStefano Zampini } 126b147fbf3SStefano Zampini 1277087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 128a30f8f8cSSatish Balay { 129f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 130dfbe8321SBarry Smith PetscErrorCode ierr; 131a30f8f8cSSatish Balay 132a30f8f8cSSatish Balay PetscFunctionBegin; 133a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 134a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 135a30f8f8cSSatish Balay PetscFunctionReturn(0); 136a30f8f8cSSatish Balay } 137a30f8f8cSSatish Balay 1387087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 139a30f8f8cSSatish Balay { 140f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 141dfbe8321SBarry Smith PetscErrorCode ierr; 142a30f8f8cSSatish Balay 143a30f8f8cSSatish Balay PetscFunctionBegin; 144a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 145a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 146a30f8f8cSSatish Balay PetscFunctionReturn(0); 147a30f8f8cSSatish Balay } 148a30f8f8cSSatish Balay 149d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 150a30f8f8cSSatish Balay { \ 151a30f8f8cSSatish Balay brow = row/bs; \ 152a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 153a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 154a30f8f8cSSatish Balay bcol = col/bs; \ 155a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 156a30f8f8cSSatish Balay low = 0; high = nrow; \ 157a30f8f8cSSatish Balay while (high-low > 3) { \ 158a30f8f8cSSatish Balay t = (low+high)/2; \ 159a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 160a30f8f8cSSatish Balay else low = t; \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 163a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 164a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 165a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 166a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 167a30f8f8cSSatish Balay else *bap = value; \ 168a30f8f8cSSatish Balay goto a_noinsert; \ 169a30f8f8cSSatish Balay } \ 170a30f8f8cSSatish Balay } \ 171a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 172d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 173fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 174a30f8f8cSSatish Balay N = nrow++ - 1; \ 175a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 176580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 177580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 178580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 179a30f8f8cSSatish Balay rp[_i] = bcol; \ 180a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 181e56f5c9eSBarry Smith A->nonzerostate++;\ 182a30f8f8cSSatish Balay a_noinsert:; \ 183a30f8f8cSSatish Balay ailen[brow] = nrow; \ 184a30f8f8cSSatish Balay } 185e5e170daSBarry Smith 186d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 187a30f8f8cSSatish Balay { \ 188a30f8f8cSSatish Balay brow = row/bs; \ 189a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 190a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 191a30f8f8cSSatish Balay bcol = col/bs; \ 192a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 193a30f8f8cSSatish Balay low = 0; high = nrow; \ 194a30f8f8cSSatish Balay while (high-low > 3) { \ 195a30f8f8cSSatish Balay t = (low+high)/2; \ 196a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 197a30f8f8cSSatish Balay else low = t; \ 198a30f8f8cSSatish Balay } \ 199a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 200a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 201a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 202a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 203a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 204a30f8f8cSSatish Balay else *bap = value; \ 205a30f8f8cSSatish Balay goto b_noinsert; \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay } \ 208a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 209d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 210fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 211a30f8f8cSSatish Balay N = nrow++ - 1; \ 212a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 213580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 214580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 215580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay rp[_i] = bcol; \ 217a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 218e56f5c9eSBarry Smith B->nonzerostate++;\ 219a30f8f8cSSatish Balay b_noinsert:; \ 220a30f8f8cSSatish Balay bilen[brow] = nrow; \ 221a30f8f8cSSatish Balay } 222a30f8f8cSSatish Balay 223a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 224476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 225a30f8f8cSSatish Balay */ 226dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 227a30f8f8cSSatish Balay { 228a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 229a30f8f8cSSatish Balay MatScalar value; 230ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 231dfbe8321SBarry Smith PetscErrorCode ierr; 2321302d50aSBarry Smith PetscInt i,j,row,col; 233d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 234d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 235d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 236a30f8f8cSSatish Balay 237a30f8f8cSSatish Balay /* Some Variables required in the macro */ 238a30f8f8cSSatish Balay Mat A = baij->A; 239a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2401302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 241a30f8f8cSSatish Balay MatScalar *aa =a->a; 242a30f8f8cSSatish Balay 243a30f8f8cSSatish Balay Mat B = baij->B; 244a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2451302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 246a30f8f8cSSatish Balay MatScalar *ba =b->a; 247a30f8f8cSSatish Balay 2481302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2491302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 250a30f8f8cSSatish Balay MatScalar *ap,*bap; 251a30f8f8cSSatish Balay 252a30f8f8cSSatish Balay /* for stash */ 2530298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2540298fd71SBarry Smith MatScalar *v_loc = NULL; 255a30f8f8cSSatish Balay 256a30f8f8cSSatish Balay PetscFunctionBegin; 257a30f8f8cSSatish Balay if (!baij->donotstash) { 25859ffdab8SBarry Smith if (n > baij->n_loc) { 25959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 26059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 261785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 262785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 26326fbe8dcSKarl Rupp 26459ffdab8SBarry Smith baij->n_loc = n; 26559ffdab8SBarry Smith } 26659ffdab8SBarry Smith in_loc = baij->in_loc; 26759ffdab8SBarry Smith v_loc = baij->v_loc; 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay 270a30f8f8cSSatish Balay for (i=0; i<m; i++) { 271a30f8f8cSSatish Balay if (im[i] < 0) continue; 272c1758adbSBarry Smith if (PetscUnlikely(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 273a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 274a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 275a30f8f8cSSatish Balay for (j=0; j<n; j++) { 27601b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 27701b2bd88SHong Zhang if (a->ignore_ltriangular) { 27801b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 27926fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 28001b2bd88SHong Zhang } 281a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 282a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 283a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 284a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 285db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 286db4deed7SKarl Rupp else value = v[i+j*m]; 287d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 288a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 289a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 290c1758adbSBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 291a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 292a30f8f8cSSatish Balay if (mat->was_assembled) { 293a30f8f8cSSatish Balay if (!baij->colmap) { 294ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 295a30f8f8cSSatish Balay } 296a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 297a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 29871730473SSatish Balay col = col - 1; 299a30f8f8cSSatish Balay #else 30071730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 301a30f8f8cSSatish Balay #endif 302a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 303ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 304a30f8f8cSSatish Balay col = in[j]; 305a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 306a30f8f8cSSatish Balay B = baij->B; 307a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 308a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 309a30f8f8cSSatish Balay ba = b->a; 31071730473SSatish Balay } else col += in[j]%bs; 311a30f8f8cSSatish Balay } else col = in[j]; 312db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 313db4deed7SKarl Rupp else value = v[i+j*m]; 314d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 315a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay } else { /* off processor entry */ 3194cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 320a30f8f8cSSatish Balay if (!baij->donotstash) { 3215080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 322a30f8f8cSSatish Balay n_loc = 0; 323a30f8f8cSSatish Balay for (j=0; j<n; j++) { 324f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 325a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 326a30f8f8cSSatish Balay if (roworiented) { 327a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 328a30f8f8cSSatish Balay } else { 329a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 330a30f8f8cSSatish Balay } 331a30f8f8cSSatish Balay n_loc++; 332a30f8f8cSSatish Balay } 333b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 334a30f8f8cSSatish Balay } 335a30f8f8cSSatish Balay } 336a30f8f8cSSatish Balay } 337a30f8f8cSSatish Balay PetscFunctionReturn(0); 338a30f8f8cSSatish Balay } 339a30f8f8cSSatish Balay 34036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34136bd2089SBarry Smith { 34236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 34336bd2089SBarry Smith PetscErrorCode ierr; 34436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 34636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 34836bd2089SBarry Smith const PetscScalar *value = v; 34936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35036bd2089SBarry Smith 35136bd2089SBarry Smith PetscFunctionBegin; 35236bd2089SBarry Smith if (col < row) { 35336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 35436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 35536bd2089SBarry Smith } 35636bd2089SBarry Smith rp = aj + ai[row]; 35736bd2089SBarry Smith ap = aa + bs2*ai[row]; 35836bd2089SBarry Smith rmax = imax[row]; 35936bd2089SBarry Smith nrow = ailen[row]; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith low = 0; 36236bd2089SBarry Smith high = nrow; 36336bd2089SBarry Smith 36436bd2089SBarry Smith while (high-low > 7) { 36536bd2089SBarry Smith t = (low+high)/2; 36636bd2089SBarry Smith if (rp[t] > col) high = t; 36736bd2089SBarry Smith else low = t; 36836bd2089SBarry Smith } 36936bd2089SBarry Smith for (i=low; i<high; i++) { 37036bd2089SBarry Smith if (rp[i] > col) break; 37136bd2089SBarry Smith if (rp[i] == col) { 37236bd2089SBarry Smith bap = ap + bs2*i; 37336bd2089SBarry Smith if (roworiented) { 37436bd2089SBarry Smith if (is == ADD_VALUES) { 37536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37736bd2089SBarry Smith bap[jj] += *value++; 37836bd2089SBarry Smith } 37936bd2089SBarry Smith } 38036bd2089SBarry Smith } else { 38136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 38236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38336bd2089SBarry Smith bap[jj] = *value++; 38436bd2089SBarry Smith } 38536bd2089SBarry Smith } 38636bd2089SBarry Smith } 38736bd2089SBarry Smith } else { 38836bd2089SBarry Smith if (is == ADD_VALUES) { 38936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39136bd2089SBarry Smith *bap++ += *value++; 39236bd2089SBarry Smith } 39336bd2089SBarry Smith } 39436bd2089SBarry Smith } else { 39536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39736bd2089SBarry Smith *bap++ = *value++; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith } 40236bd2089SBarry Smith goto noinsert2; 40336bd2089SBarry Smith } 40436bd2089SBarry Smith } 40536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 40736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40836bd2089SBarry Smith N = nrow++ - 1; high++; 40936bd2089SBarry Smith /* shift up all the later entries in this row */ 410580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 411580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 41236bd2089SBarry Smith rp[i] = col; 41336bd2089SBarry Smith bap = ap + bs2*i; 41436bd2089SBarry Smith if (roworiented) { 41536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 41736bd2089SBarry Smith bap[jj] = *value++; 41836bd2089SBarry Smith } 41936bd2089SBarry Smith } 42036bd2089SBarry Smith } else { 42136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42236bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42336bd2089SBarry Smith *bap++ = *value++; 42436bd2089SBarry Smith } 42536bd2089SBarry Smith } 42636bd2089SBarry Smith } 42736bd2089SBarry Smith noinsert2:; 42836bd2089SBarry Smith ailen[row] = nrow; 42936bd2089SBarry Smith PetscFunctionReturn(0); 43036bd2089SBarry Smith } 43136bd2089SBarry Smith 43236bd2089SBarry Smith /* 43336bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 43436bd2089SBarry Smith */ 43536bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 43636bd2089SBarry Smith { 43736bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 43836bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 43936bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 44036bd2089SBarry Smith PetscErrorCode ierr; 44136bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 44236bd2089SBarry Smith PetscBool roworiented=a->roworiented; 44336bd2089SBarry Smith const PetscScalar *value = v; 44436bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 44536bd2089SBarry Smith 44636bd2089SBarry Smith PetscFunctionBegin; 44736bd2089SBarry Smith rp = aj + ai[row]; 44836bd2089SBarry Smith ap = aa + bs2*ai[row]; 44936bd2089SBarry Smith rmax = imax[row]; 45036bd2089SBarry Smith nrow = ailen[row]; 45136bd2089SBarry Smith low = 0; 45236bd2089SBarry Smith high = nrow; 45336bd2089SBarry Smith value = v; 45436bd2089SBarry Smith while (high-low > 7) { 45536bd2089SBarry Smith t = (low+high)/2; 45636bd2089SBarry Smith if (rp[t] > col) high = t; 45736bd2089SBarry Smith else low = t; 45836bd2089SBarry Smith } 45936bd2089SBarry Smith for (i=low; i<high; i++) { 46036bd2089SBarry Smith if (rp[i] > col) break; 46136bd2089SBarry Smith if (rp[i] == col) { 46236bd2089SBarry Smith bap = ap + bs2*i; 46336bd2089SBarry Smith if (roworiented) { 46436bd2089SBarry Smith if (is == ADD_VALUES) { 46536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46736bd2089SBarry Smith bap[jj] += *value++; 46836bd2089SBarry Smith } 46936bd2089SBarry Smith } 47036bd2089SBarry Smith } else { 47136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 47236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 47336bd2089SBarry Smith bap[jj] = *value++; 47436bd2089SBarry Smith } 47536bd2089SBarry Smith } 47636bd2089SBarry Smith } 47736bd2089SBarry Smith } else { 47836bd2089SBarry Smith if (is == ADD_VALUES) { 47936bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48136bd2089SBarry Smith bap[jj] += value[jj]; 48236bd2089SBarry Smith } 48336bd2089SBarry Smith bap += bs; 48436bd2089SBarry Smith } 48536bd2089SBarry Smith } else { 48636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48836bd2089SBarry Smith bap[jj] = value[jj]; 48936bd2089SBarry Smith } 49036bd2089SBarry Smith bap += bs; 49136bd2089SBarry Smith } 49236bd2089SBarry Smith } 49336bd2089SBarry Smith } 49436bd2089SBarry Smith goto noinsert2; 49536bd2089SBarry Smith } 49636bd2089SBarry Smith } 49736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 49836bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 49936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 50036bd2089SBarry Smith N = nrow++ - 1; high++; 50136bd2089SBarry Smith /* shift up all the later entries in this row */ 502580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 503580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 50436bd2089SBarry Smith rp[i] = col; 50536bd2089SBarry Smith bap = ap + bs2*i; 50636bd2089SBarry Smith if (roworiented) { 50736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50836bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 50936bd2089SBarry Smith bap[jj] = *value++; 51036bd2089SBarry Smith } 51136bd2089SBarry Smith } 51236bd2089SBarry Smith } else { 51336bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 51436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 51536bd2089SBarry Smith *bap++ = *value++; 51636bd2089SBarry Smith } 51736bd2089SBarry Smith } 51836bd2089SBarry Smith } 51936bd2089SBarry Smith noinsert2:; 52036bd2089SBarry Smith ailen[row] = nrow; 52136bd2089SBarry Smith PetscFunctionReturn(0); 52236bd2089SBarry Smith } 52336bd2089SBarry Smith 52436bd2089SBarry Smith /* 52536bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 52636bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 52736bd2089SBarry Smith */ 528dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 529a30f8f8cSSatish Balay { 5300880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 531f15d580aSBarry Smith const MatScalar *value; 532f15d580aSBarry Smith MatScalar *barray =baij->barray; 533ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 534dfbe8321SBarry Smith PetscErrorCode ierr; 535899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 536476417e5SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 537476417e5SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 5380880e062SHong Zhang 539a30f8f8cSSatish Balay PetscFunctionBegin; 5400880e062SHong Zhang if (!barray) { 541785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 5420880e062SHong Zhang baij->barray = barray; 5430880e062SHong Zhang } 5440880e062SHong Zhang 5450880e062SHong Zhang if (roworiented) { 5460880e062SHong Zhang stepval = (n-1)*bs; 5470880e062SHong Zhang } else { 5480880e062SHong Zhang stepval = (m-1)*bs; 5490880e062SHong Zhang } 5500880e062SHong Zhang for (i=0; i<m; i++) { 5510880e062SHong Zhang if (im[i] < 0) continue; 552cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 5530880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5540880e062SHong Zhang row = im[i] - rstart; 5550880e062SHong Zhang for (j=0; j<n; j++) { 556f3f98c53SJed Brown if (im[i] > in[j]) { 557f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 558e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 559f3f98c53SJed Brown } 5600880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5610880e062SHong Zhang if ((roworiented) && (n == 1)) { 562f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 5630880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 564f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 5650880e062SHong Zhang } else { /* Here a copy is required */ 5660880e062SHong Zhang if (roworiented) { 5670880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 5680880e062SHong Zhang } else { 5690880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 5700880e062SHong Zhang } 5710880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5720880e062SHong Zhang for (jj=0; jj<bs; jj++) { 5730880e062SHong Zhang *barray++ = *value++; 5740880e062SHong Zhang } 5750880e062SHong Zhang } 5760880e062SHong Zhang barray -=bs2; 5770880e062SHong Zhang } 5780880e062SHong Zhang 5790880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5800880e062SHong Zhang col = in[j] - cstart; 58136bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 58226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 583cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5840880e062SHong Zhang else { 5850880e062SHong Zhang if (mat->was_assembled) { 5860880e062SHong Zhang if (!baij->colmap) { 587ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5880880e062SHong Zhang } 5890880e062SHong Zhang 5902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5910880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5921302d50aSBarry Smith { PetscInt data; 5930880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 594e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5950880e062SHong Zhang } 5960880e062SHong Zhang #else 597e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5980880e062SHong Zhang #endif 5990880e062SHong Zhang #endif 6000880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 6010880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 6020880e062SHong Zhang col = (col - 1)/bs; 6030880e062SHong Zhang #else 6040880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 6050880e062SHong Zhang #endif 6060880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 607ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 6080880e062SHong Zhang col = in[j]; 6090880e062SHong Zhang } 61026fbe8dcSKarl Rupp } else col = in[j]; 61136bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 6120880e062SHong Zhang } 6130880e062SHong Zhang } 6140880e062SHong Zhang } else { 615bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 6160880e062SHong Zhang if (!baij->donotstash) { 6170880e062SHong Zhang if (roworiented) { 6180880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6190880e062SHong Zhang } else { 6200880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6210880e062SHong Zhang } 6220880e062SHong Zhang } 6230880e062SHong Zhang } 6240880e062SHong Zhang } 6250880e062SHong Zhang PetscFunctionReturn(0); 626a30f8f8cSSatish Balay } 627a30f8f8cSSatish Balay 6281302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 629a30f8f8cSSatish Balay { 630f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 6316849ba73SBarry Smith PetscErrorCode ierr; 632d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 633d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 634a30f8f8cSSatish Balay 635a30f8f8cSSatish Balay PetscFunctionBegin; 636a30f8f8cSSatish Balay for (i=0; i<m; i++) { 637e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 638e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 639a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 640a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 641a30f8f8cSSatish Balay for (j=0; j<n; j++) { 642e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 643e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 644a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 645a30f8f8cSSatish Balay col = idxn[j] - bscstart; 646c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 647a30f8f8cSSatish Balay } else { 648a30f8f8cSSatish Balay if (!baij->colmap) { 649ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 652a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 653a30f8f8cSSatish Balay data--; 654a30f8f8cSSatish Balay #else 655a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 656a30f8f8cSSatish Balay #endif 657a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 658a30f8f8cSSatish Balay else { 659a30f8f8cSSatish Balay col = data + idxn[j]%bs; 660e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 661a30f8f8cSSatish Balay } 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay } 664f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 665a30f8f8cSSatish Balay } 666a30f8f8cSSatish Balay PetscFunctionReturn(0); 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay 669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 670a30f8f8cSSatish Balay { 671a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 672dfbe8321SBarry Smith PetscErrorCode ierr; 673a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay PetscFunctionBegin; 676a30f8f8cSSatish Balay if (baij->size == 1) { 677a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 678a30f8f8cSSatish Balay } else { 679a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 680785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 681a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 682a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 683a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 684a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 685b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6868f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 687a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6880b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6890b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6900b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6910b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 692899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 693d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6940b8dc8d2SHong Zhang MatScalar *v; 6950b8dc8d2SHong Zhang 696dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 697580bdb30SBarry Smith ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr); 6980b8dc8d2SHong Zhang /* Amat */ 6990b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 7000b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7010b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7020b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 7030b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7040b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 7050b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7060b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7070b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7080b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7090b8dc8d2SHong Zhang /* non-diagonal block */ 7100b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 7110b8dc8d2SHong Zhang } 7120b8dc8d2SHong Zhang } 7130b8dc8d2SHong Zhang } 71451f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7150b8dc8d2SHong Zhang } 7160b8dc8d2SHong Zhang /* Bmat */ 7170b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 7180b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7190b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7200b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 7210b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7220b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 7230b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7240b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7250b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7260b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7270b8dc8d2SHong Zhang rsum[grow+row] += vabs; 7280b8dc8d2SHong Zhang } 7290b8dc8d2SHong Zhang } 7300b8dc8d2SHong Zhang } 73151f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7320b8dc8d2SHong Zhang } 733b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7340b8dc8d2SHong Zhang *norm = 0.0; 735d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 7360b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7370b8dc8d2SHong Zhang } 73874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 739f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay PetscFunctionReturn(0); 742a30f8f8cSSatish Balay } 743a30f8f8cSSatish Balay 744dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 745a30f8f8cSSatish Balay { 746a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 7481302d50aSBarry Smith PetscInt nstash,reallocs; 749a30f8f8cSSatish Balay 750a30f8f8cSSatish Balay PetscFunctionBegin; 75126fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 752a30f8f8cSSatish Balay 753d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 7541e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7561e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7581e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 759a30f8f8cSSatish Balay PetscFunctionReturn(0); 760a30f8f8cSSatish Balay } 761a30f8f8cSSatish Balay 762dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 763a30f8f8cSSatish Balay { 764a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 765a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 7666849ba73SBarry Smith PetscErrorCode ierr; 76713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 768e44c0bd4SBarry Smith PetscInt *row,*col; 769ace3abfcSBarry Smith PetscBool other_disassembled; 77013f74950SBarry Smith PetscMPIInt n; 771ace3abfcSBarry Smith PetscBool r1,r2,r3; 772a30f8f8cSSatish Balay MatScalar *val; 773a30f8f8cSSatish Balay 77491c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 775a30f8f8cSSatish Balay PetscFunctionBegin; 7764cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 777a30f8f8cSSatish Balay while (1) { 778a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 779a30f8f8cSSatish Balay if (!flg) break; 780a30f8f8cSSatish Balay 781a30f8f8cSSatish Balay for (i=0; i<n;) { 782a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 78326fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 78426fbe8dcSKarl Rupp if (row[j] != rstart) break; 78526fbe8dcSKarl Rupp } 786a30f8f8cSSatish Balay if (j < n) ncols = j-i; 787a30f8f8cSSatish Balay else ncols = n-i; 788a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7894b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 790a30f8f8cSSatish Balay i = j; 791a30f8f8cSSatish Balay } 792a30f8f8cSSatish Balay } 793a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 794a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 795a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 796a30f8f8cSSatish Balay restore the original flags */ 797a30f8f8cSSatish Balay r1 = baij->roworiented; 798a30f8f8cSSatish Balay r2 = a->roworiented; 79991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 80026fbe8dcSKarl Rupp 801a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 802a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 80326fbe8dcSKarl Rupp 80491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 805a30f8f8cSSatish Balay while (1) { 806a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 807a30f8f8cSSatish Balay if (!flg) break; 808a30f8f8cSSatish Balay 809a30f8f8cSSatish Balay for (i=0; i<n;) { 810a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 81126fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 81226fbe8dcSKarl Rupp if (row[j] != rstart) break; 81326fbe8dcSKarl Rupp } 814a30f8f8cSSatish Balay if (j < n) ncols = j-i; 815a30f8f8cSSatish Balay else ncols = n-i; 8164b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 817a30f8f8cSSatish Balay i = j; 818a30f8f8cSSatish Balay } 819a30f8f8cSSatish Balay } 820a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 82126fbe8dcSKarl Rupp 822a30f8f8cSSatish Balay baij->roworiented = r1; 823a30f8f8cSSatish Balay a->roworiented = r2; 82426fbe8dcSKarl Rupp 82591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay 828a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 829a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 832a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 833a30f8f8cSSatish Balay /* 834a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 835a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 836a30f8f8cSSatish Balay */ 837a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 838b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 839a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 840ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 841a30f8f8cSSatish Balay } 842a30f8f8cSSatish Balay } 843a30f8f8cSSatish Balay 844a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 84540781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 846a30f8f8cSSatish Balay } 847a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 848a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 849a30f8f8cSSatish Balay 85074ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 85126fbe8dcSKarl Rupp 852f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8534f9cfa9eSBarry Smith 8544f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8554f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 856e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 857b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 858e56f5c9eSBarry Smith } 859a30f8f8cSSatish Balay PetscFunctionReturn(0); 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay 862dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 8639804daf3SBarry Smith #include <petscdraw.h> 8646849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 865a30f8f8cSSatish Balay { 866a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 867dfbe8321SBarry Smith PetscErrorCode ierr; 868d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8697da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 870ace3abfcSBarry Smith PetscBool iascii,isdraw; 871b0a32e0cSBarry Smith PetscViewer sviewer; 872f3ef73ceSBarry Smith PetscViewerFormat format; 873a30f8f8cSSatish Balay 874a30f8f8cSSatish Balay PetscFunctionBegin; 875251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 876251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 87732077d6dSBarry Smith if (iascii) { 878b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 879456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 880a30f8f8cSSatish Balay MatInfo info; 881ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr); 882a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8831575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 884b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 885a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 886e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 887a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 888e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 889b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8901575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 89107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 892a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 893a30f8f8cSSatish Balay PetscFunctionReturn(0); 894fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 89577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 896a30f8f8cSSatish Balay PetscFunctionReturn(0); 897c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 898c1490034SHong Zhang PetscFunctionReturn(0); 899a30f8f8cSSatish Balay } 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 902a30f8f8cSSatish Balay if (isdraw) { 903b0a32e0cSBarry Smith PetscDraw draw; 904ace3abfcSBarry Smith PetscBool isnull; 905b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 90645f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 90745f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 908a30f8f8cSSatish Balay } 909a30f8f8cSSatish Balay 9107da1fb6eSBarry Smith { 911a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 912a30f8f8cSSatish Balay Mat A; 91365d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 91465d70643SHong Zhang Mat_SeqBAIJ *Bloc; 915d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 916a30f8f8cSSatish Balay MatScalar *a; 9173e219373SBarry Smith const char *matname; 918a30f8f8cSSatish Balay 919f204ca49SKris Buschelman /* Should this be the same type as mat? */ 920ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 921a30f8f8cSSatish Balay if (!rank) { 922f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 923a30f8f8cSSatish Balay } else { 924f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 925a30f8f8cSSatish Balay } 926f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 9270298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 9282b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 9293bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 930a30f8f8cSSatish Balay 931a30f8f8cSSatish Balay /* copy over the A part */ 93265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 933a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 934785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 937e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 93826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 939a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 940e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 941a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 942dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 94326fbe8dcSKarl Rupp col++; 94426fbe8dcSKarl Rupp a += bs; 945a30f8f8cSSatish Balay } 946a30f8f8cSSatish Balay } 947a30f8f8cSSatish Balay } 948a30f8f8cSSatish Balay /* copy over the B part */ 94965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 95065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 951a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 952e9f7bc9eSHong Zhang 953e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 95426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 955a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 956a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 957a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 958799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 95926fbe8dcSKarl Rupp col++; 96026fbe8dcSKarl Rupp a += bs; 961a30f8f8cSSatish Balay } 962a30f8f8cSSatish Balay } 963a30f8f8cSSatish Balay } 964a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 965a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 966a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 967a30f8f8cSSatish Balay /* 968a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 969b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 970a30f8f8cSSatish Balay */ 9713f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 972ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9733e219373SBarry Smith if (!rank) { 974ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 975383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 976a30f8f8cSSatish Balay } 9773f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9781575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9796bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay PetscFunctionReturn(0); 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay 984618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 985618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 986d1654148SHong Zhang 987dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 988a30f8f8cSSatish Balay { 989dfbe8321SBarry Smith PetscErrorCode ierr; 990ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 991a30f8f8cSSatish Balay 992a30f8f8cSSatish Balay PetscFunctionBegin; 993251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 994251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 995251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 996251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 997d1654148SHong Zhang if (iascii || isdraw || issocket) { 998a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 999d1654148SHong Zhang } else if (isbinary) { 1000d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1001a30f8f8cSSatish Balay } 1002a30f8f8cSSatish Balay PetscFunctionReturn(0); 1003a30f8f8cSSatish Balay } 1004a30f8f8cSSatish Balay 1005dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1006a30f8f8cSSatish Balay { 1007a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1008dfbe8321SBarry Smith PetscErrorCode ierr; 1009a30f8f8cSSatish Balay 1010a30f8f8cSSatish Balay PetscFunctionBegin; 1011a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1012d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1013a30f8f8cSSatish Balay #endif 1014a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1015a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 10166bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 10176bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1018a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 10196bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1020a30f8f8cSSatish Balay #else 102105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1022a30f8f8cSSatish Balay #endif 102305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 10246bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 10256bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 10266bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 10276bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 10286bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 10296bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 10306bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 10316bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 10325755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 103305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 103405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 10356bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 10366bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 10376bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1038ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 103905b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1040a30f8f8cSSatish Balay #endif 104159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 104259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1043899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1044bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1045901853e0SKris Buschelman 1046f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr); 1047bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1048bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1049bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1050d2c30c80SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 10516214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 10526214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 10536214f412SHong Zhang #endif 1054d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1055d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL);CHKERRQ(ierr); 1056d24d4204SJose E. Roman #endif 1057b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr); 1058b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr); 1059a30f8f8cSSatish Balay PetscFunctionReturn(0); 1060a30f8f8cSSatish Balay } 1061a30f8f8cSSatish Balay 1062547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1063547795f9SHong Zhang { 1064547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1065547795f9SHong Zhang PetscErrorCode ierr; 1066eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 10676de40e93SBarry Smith PetscScalar *from; 10686de40e93SBarry Smith const PetscScalar *x; 1069547795f9SHong Zhang 1070547795f9SHong Zhang PetscFunctionBegin; 1071547795f9SHong Zhang /* diagonal part */ 1072547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1073547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1074547795f9SHong Zhang 1075547795f9SHong Zhang /* subdiagonal part */ 1076a3234186SStefano Zampini if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name); 1077547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1078547795f9SHong Zhang 1079547795f9SHong Zhang /* copy x into the vec slvec0 */ 1080547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10816de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1082547795f9SHong Zhang 1083580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1084547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 10856de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1086547795f9SHong Zhang 1087547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1088547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1089547795f9SHong Zhang /* supperdiagonal part */ 1090547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1091547795f9SHong Zhang PetscFunctionReturn(0); 1092547795f9SHong Zhang } 1093547795f9SHong Zhang 1094dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1095a9d4b620SHong Zhang { 1096a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1097dfbe8321SBarry Smith PetscErrorCode ierr; 1098eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1099d9ca1df4SBarry Smith PetscScalar *from; 1100d9ca1df4SBarry Smith const PetscScalar *x; 1101a9d4b620SHong Zhang 1102a9d4b620SHong Zhang PetscFunctionBegin; 1103a9d4b620SHong Zhang /* diagonal part */ 1104a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1105fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1106a9d4b620SHong Zhang 1107a9d4b620SHong Zhang /* subdiagonal part */ 1108a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1109fc165ae2SBarry Smith 1110a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11111ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1112d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1113a9d4b620SHong Zhang 1114580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1115fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1116d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1117fc165ae2SBarry Smith 1118fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1119ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1120a9d4b620SHong Zhang /* supperdiagonal part */ 1121a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1122a9d4b620SHong Zhang PetscFunctionReturn(0); 1123a9d4b620SHong Zhang } 1124a9d4b620SHong Zhang 1125eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz) 1126eb1ec7c1SStefano Zampini { 1127eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1128eb1ec7c1SStefano Zampini PetscErrorCode ierr; 1129eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1130eb1ec7c1SStefano Zampini PetscScalar *from,zero=0.0; 1131eb1ec7c1SStefano Zampini const PetscScalar *x; 1132eb1ec7c1SStefano Zampini 1133eb1ec7c1SStefano Zampini PetscFunctionBegin; 1134eb1ec7c1SStefano Zampini /* diagonal part */ 1135eb1ec7c1SStefano Zampini ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1136eb1ec7c1SStefano Zampini ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1137eb1ec7c1SStefano Zampini 1138eb1ec7c1SStefano Zampini /* subdiagonal part */ 1139a3234186SStefano Zampini if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name); 1140eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1141eb1ec7c1SStefano Zampini 1142eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 1143eb1ec7c1SStefano Zampini ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1144eb1ec7c1SStefano Zampini ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1145eb1ec7c1SStefano Zampini ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1146eb1ec7c1SStefano Zampini ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1147eb1ec7c1SStefano Zampini 1148eb1ec7c1SStefano Zampini ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1149eb1ec7c1SStefano Zampini ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1150eb1ec7c1SStefano Zampini ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1151eb1ec7c1SStefano Zampini 1152eb1ec7c1SStefano Zampini /* supperdiagonal part */ 1153eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1154eb1ec7c1SStefano Zampini PetscFunctionReturn(0); 1155eb1ec7c1SStefano Zampini } 1156eb1ec7c1SStefano Zampini 1157dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1158a30f8f8cSSatish Balay { 1159de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1160dfbe8321SBarry Smith PetscErrorCode ierr; 1161d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1162d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1163d9ca1df4SBarry Smith const PetscScalar *x; 1164a9d4b620SHong Zhang 1165a9d4b620SHong Zhang PetscFunctionBegin; 1166a9d4b620SHong Zhang /* diagonal part */ 1167a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11682dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1169a9d4b620SHong Zhang 1170a9d4b620SHong Zhang /* subdiagonal part */ 1171a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1172a9d4b620SHong Zhang 1173a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11741ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1175d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1176580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 11771ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1178a9d4b620SHong Zhang 1179ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1180d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1181ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1182a9d4b620SHong Zhang 1183a9d4b620SHong Zhang /* supperdiagonal part */ 1184a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1185a9d4b620SHong Zhang PetscFunctionReturn(0); 1186a9d4b620SHong Zhang } 1187a9d4b620SHong Zhang 1188a30f8f8cSSatish Balay /* 1189a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1190a30f8f8cSSatish Balay diagonal block 1191a30f8f8cSSatish Balay */ 1192dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1193a30f8f8cSSatish Balay { 1194a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1195dfbe8321SBarry Smith PetscErrorCode ierr; 1196a30f8f8cSSatish Balay 1197a30f8f8cSSatish Balay PetscFunctionBegin; 1198e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1199a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1200a30f8f8cSSatish Balay PetscFunctionReturn(0); 1201a30f8f8cSSatish Balay } 1202a30f8f8cSSatish Balay 1203f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1204a30f8f8cSSatish Balay { 1205a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1206dfbe8321SBarry Smith PetscErrorCode ierr; 1207a30f8f8cSSatish Balay 1208a30f8f8cSSatish Balay PetscFunctionBegin; 1209f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1210f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay PetscFunctionReturn(0); 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay 12141302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1215a30f8f8cSSatish Balay { 1216d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1217d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1218d0d4cfc2SHong Zhang PetscErrorCode ierr; 1219d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1220d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1221899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1222d0d4cfc2SHong Zhang 1223a30f8f8cSSatish Balay PetscFunctionBegin; 1224e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1225d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1226d0d4cfc2SHong Zhang 1227d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1228d0d4cfc2SHong Zhang /* 1229d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1230d0d4cfc2SHong Zhang */ 1231d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1232d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1233d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1234d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1235d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 123626fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1237d0d4cfc2SHong Zhang } 1238dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1239d0d4cfc2SHong Zhang } 1240d0d4cfc2SHong Zhang 1241e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1242d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1243d0d4cfc2SHong Zhang 1244d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1245f4259b30SLisandro Dalcin if (!v) {pvA = NULL; pvB = NULL;} 1246f4259b30SLisandro Dalcin if (!idx) {pcA = NULL; if (!v) pcB = NULL;} 1247d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1248d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1249d0d4cfc2SHong Zhang nztot = nzA + nzB; 1250d0d4cfc2SHong Zhang 1251d0d4cfc2SHong Zhang cmap = mat->garray; 1252d0d4cfc2SHong Zhang if (v || idx) { 1253d0d4cfc2SHong Zhang if (nztot) { 1254d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1255d0d4cfc2SHong Zhang PetscInt imark = -1; 1256d0d4cfc2SHong Zhang if (v) { 1257d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1258d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1259d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1260d0d4cfc2SHong Zhang else break; 1261d0d4cfc2SHong Zhang } 1262d0d4cfc2SHong Zhang imark = i; 1263d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1264d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1265d0d4cfc2SHong Zhang } 1266d0d4cfc2SHong Zhang if (idx) { 1267d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1268d0d4cfc2SHong Zhang if (imark > -1) { 1269d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1270d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1271d0d4cfc2SHong Zhang } 1272d0d4cfc2SHong Zhang } else { 1273d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 127426fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1275d0d4cfc2SHong Zhang else break; 1276d0d4cfc2SHong Zhang } 1277d0d4cfc2SHong Zhang imark = i; 1278d0d4cfc2SHong Zhang } 1279d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1280d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1281d0d4cfc2SHong Zhang } 1282d0d4cfc2SHong Zhang } else { 1283f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1284f4259b30SLisandro Dalcin if (v) *v = NULL; 1285d0d4cfc2SHong Zhang } 1286d0d4cfc2SHong Zhang } 1287d0d4cfc2SHong Zhang *nz = nztot; 1288d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1289d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1290a30f8f8cSSatish Balay PetscFunctionReturn(0); 1291a30f8f8cSSatish Balay } 1292a30f8f8cSSatish Balay 12931302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1294a30f8f8cSSatish Balay { 1295a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1296a30f8f8cSSatish Balay 1297a30f8f8cSSatish Balay PetscFunctionBegin; 1298e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1299a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1300a30f8f8cSSatish Balay PetscFunctionReturn(0); 1301a30f8f8cSSatish Balay } 1302a30f8f8cSSatish Balay 1303d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1304d0d4cfc2SHong Zhang { 1305d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1306d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1307d0d4cfc2SHong Zhang 1308d0d4cfc2SHong Zhang PetscFunctionBegin; 1309d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1310d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1311d0d4cfc2SHong Zhang } 1312d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1313d0d4cfc2SHong Zhang { 1314d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1315d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1316d0d4cfc2SHong Zhang 1317d0d4cfc2SHong Zhang PetscFunctionBegin; 1318d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1319d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1320d0d4cfc2SHong Zhang } 1321d0d4cfc2SHong Zhang 1322*2726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1323*2726fb6dSPierre Jolivet { 1324*2726fb6dSPierre Jolivet #if defined(PETSC_USE_COMPLEX) 1325*2726fb6dSPierre Jolivet PetscErrorCode ierr; 1326*2726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data; 1327*2726fb6dSPierre Jolivet 1328*2726fb6dSPierre Jolivet PetscFunctionBegin; 1329*2726fb6dSPierre Jolivet ierr = MatConjugate(a->A);CHKERRQ(ierr); 1330*2726fb6dSPierre Jolivet ierr = MatConjugate(a->B);CHKERRQ(ierr); 1331*2726fb6dSPierre Jolivet #else 1332*2726fb6dSPierre Jolivet PetscFunctionBegin; 1333*2726fb6dSPierre Jolivet #endif 1334*2726fb6dSPierre Jolivet PetscFunctionReturn(0); 1335*2726fb6dSPierre Jolivet } 1336*2726fb6dSPierre Jolivet 133799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 133899cafbc1SBarry Smith { 133999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 134099cafbc1SBarry Smith PetscErrorCode ierr; 134199cafbc1SBarry Smith 134299cafbc1SBarry Smith PetscFunctionBegin; 134399cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 134499cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 134599cafbc1SBarry Smith PetscFunctionReturn(0); 134699cafbc1SBarry Smith } 134799cafbc1SBarry Smith 134899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 134999cafbc1SBarry Smith { 135099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 135199cafbc1SBarry Smith PetscErrorCode ierr; 135299cafbc1SBarry Smith 135399cafbc1SBarry Smith PetscFunctionBegin; 135499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 135599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 135699cafbc1SBarry Smith PetscFunctionReturn(0); 135799cafbc1SBarry Smith } 135899cafbc1SBarry Smith 13597dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 136036032a97SHong Zhang Input: isrow - distributed(parallel), 136136032a97SHong Zhang iscol_local - locally owned (seq) 136236032a97SHong Zhang */ 136336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13648f46ffcaSHong Zhang { 13658f46ffcaSHong Zhang PetscErrorCode ierr; 13668f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13678f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 136836032a97SHong Zhang 136936032a97SHong Zhang PetscFunctionBegin; 13708f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13718f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13721098a8e8SHong Zhang if (sz1 > sz2) { 13731098a8e8SHong Zhang *flg = PETSC_FALSE; 13741098a8e8SHong Zhang PetscFunctionReturn(0); 13751098a8e8SHong Zhang } 13768f46ffcaSHong Zhang 13778f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 13788f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13798f46ffcaSHong Zhang 13808f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 13818f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 1382580bdb30SBarry Smith ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr); 1383580bdb30SBarry Smith ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr); 13848f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 13858f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 13868f46ffcaSHong Zhang 13878f46ffcaSHong Zhang nmatch=0; 13888f46ffcaSHong Zhang k = 0; 13898f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 13908f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 13918f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13928f46ffcaSHong Zhang k = j; nmatch++; 13938f46ffcaSHong Zhang break; 13948f46ffcaSHong Zhang } 13958f46ffcaSHong Zhang } 13968f46ffcaSHong Zhang } 13978f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 13988f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13998f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 14008f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 14011098a8e8SHong Zhang if (nmatch < sz1) { 14021098a8e8SHong Zhang *flg = PETSC_FALSE; 14031098a8e8SHong Zhang } else { 14041098a8e8SHong Zhang *flg = PETSC_TRUE; 14051098a8e8SHong Zhang } 140636032a97SHong Zhang PetscFunctionReturn(0); 14078f46ffcaSHong Zhang } 140836032a97SHong Zhang 14097dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 141036032a97SHong Zhang { 141136032a97SHong Zhang PetscErrorCode ierr; 141236032a97SHong Zhang IS iscol_local; 141336032a97SHong Zhang PetscInt csize; 141436032a97SHong Zhang PetscBool isequal; 141536032a97SHong Zhang 141636032a97SHong Zhang PetscFunctionBegin; 141736032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 141836032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 141936032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 142036032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 142136032a97SHong Zhang } else { 142236032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 142336032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 142436032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 14258f46ffcaSHong Zhang } 14268f46ffcaSHong Zhang 14277dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 14287dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 14298f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 14308f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 14318f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 14328f46ffcaSHong Zhang } 14338f46ffcaSHong Zhang PetscFunctionReturn(0); 14348f46ffcaSHong Zhang } 14358f46ffcaSHong Zhang 1436dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1437a30f8f8cSSatish Balay { 1438a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1439dfbe8321SBarry Smith PetscErrorCode ierr; 1440a30f8f8cSSatish Balay 1441a30f8f8cSSatish Balay PetscFunctionBegin; 1442a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1443a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1444a30f8f8cSSatish Balay PetscFunctionReturn(0); 1445a30f8f8cSSatish Balay } 1446a30f8f8cSSatish Balay 1447dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1448a30f8f8cSSatish Balay { 1449a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1450a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1451dfbe8321SBarry Smith PetscErrorCode ierr; 14523966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 1453a30f8f8cSSatish Balay 1454a30f8f8cSSatish Balay PetscFunctionBegin; 1455d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 145626fbe8dcSKarl Rupp 1457a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 145826fbe8dcSKarl Rupp 1459a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1460a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 146126fbe8dcSKarl Rupp 1462a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 146326fbe8dcSKarl Rupp 1464a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1465a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1466a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1467a30f8f8cSSatish Balay info->nz_used = isend[0]; 1468a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1469a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1470a30f8f8cSSatish Balay info->memory = isend[3]; 1471a30f8f8cSSatish Balay info->mallocs = isend[4]; 1472a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14733966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 147426fbe8dcSKarl Rupp 1475a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1476a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1477a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1478a30f8f8cSSatish Balay info->memory = irecv[3]; 1479a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1480a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14813966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 148226fbe8dcSKarl Rupp 1483a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1484a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1485a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1486a30f8f8cSSatish Balay info->memory = irecv[3]; 1487a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1488f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1489a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1490a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1491a30f8f8cSSatish Balay info->factor_mallocs = 0; 1492a30f8f8cSSatish Balay PetscFunctionReturn(0); 1493a30f8f8cSSatish Balay } 1494a30f8f8cSSatish Balay 1495ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1496a30f8f8cSSatish Balay { 1497a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1498d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1499dfbe8321SBarry Smith PetscErrorCode ierr; 1500a30f8f8cSSatish Balay 1501a30f8f8cSSatish Balay PetscFunctionBegin; 1502e98b92d7SKris Buschelman switch (op) { 1503512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1504e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 150528b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1506a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1507c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1508e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 150943674050SBarry Smith MatCheckPreallocated(A,1); 15104e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15114e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1512e98b92d7SKris Buschelman break; 1513e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 151443674050SBarry Smith MatCheckPreallocated(A,1); 15154e0d8c25SBarry Smith a->roworiented = flg; 151626fbe8dcSKarl Rupp 15174e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15184e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1519e98b92d7SKris Buschelman break; 15208c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1521071fcb05SBarry Smith case MAT_SORTED_FULL: 1522290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1523e98b92d7SKris Buschelman break; 1524e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15254e0d8c25SBarry Smith a->donotstash = flg; 1526e98b92d7SKris Buschelman break; 1527e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 15284e0d8c25SBarry Smith a->ht_flag = flg; 1529e98b92d7SKris Buschelman break; 15309a4540c5SBarry Smith case MAT_HERMITIAN: 153143674050SBarry Smith MatCheckPreallocated(A,1); 1532eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15330f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1534eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1535547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1536eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1537eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1538eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1539eb1ec7c1SStefano Zampini A->symmetric = PETSC_FALSE; 1540eb1ec7c1SStefano Zampini } 15410f2140c7SStefano Zampini #endif 1542eeffb40dSHong Zhang break; 1543ffa07934SHong Zhang case MAT_SPD: 154477e54ba9SKris Buschelman case MAT_SYMMETRIC: 154543674050SBarry Smith MatCheckPreallocated(A,1); 1546eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1547eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1548eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1549eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1550eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1551eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1552eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1553eb1ec7c1SStefano Zampini } 1554eb1ec7c1SStefano Zampini #endif 1555eeffb40dSHong Zhang break; 155677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 155743674050SBarry Smith MatCheckPreallocated(A,1); 1558eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1559eeffb40dSHong Zhang break; 15609a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1561e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1562290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 156377e54ba9SKris Buschelman break; 1564d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15654e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1566d0d4cfc2SHong Zhang break; 1567d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15684e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1569d0d4cfc2SHong Zhang break; 1570d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15714e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1572d0d4cfc2SHong Zhang break; 1573e98b92d7SKris Buschelman default: 1574e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1575a30f8f8cSSatish Balay } 1576a30f8f8cSSatish Balay PetscFunctionReturn(0); 1577a30f8f8cSSatish Balay } 1578a30f8f8cSSatish Balay 1579fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1580a30f8f8cSSatish Balay { 1581dfbe8321SBarry Smith PetscErrorCode ierr; 15826e111a19SKarl Rupp 1583a30f8f8cSSatish Balay PetscFunctionBegin; 1584cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1585999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1586cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 1587cf37664fSBarry Smith ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1588fc4dec0aSBarry Smith } 15898115998fSBarry Smith PetscFunctionReturn(0); 1590a30f8f8cSSatish Balay } 1591a30f8f8cSSatish Balay 1592dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1593a30f8f8cSSatish Balay { 1594a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1595a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1596dfbe8321SBarry Smith PetscErrorCode ierr; 15975e90f9d9SHong Zhang PetscInt nv,m,n; 1598ace3abfcSBarry Smith PetscBool flg; 1599a30f8f8cSSatish Balay 1600a30f8f8cSSatish Balay PetscFunctionBegin; 1601a30f8f8cSSatish Balay if (ll != rr) { 1602b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1603e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1604a30f8f8cSSatish Balay } 1605b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1606b3bf805bSHong Zhang 16075e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1608e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1609b3bf805bSHong Zhang 16105e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1611e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 16125e90f9d9SHong Zhang 1613ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16145e90f9d9SHong Zhang 16155e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 16160298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 16175e90f9d9SHong Zhang 16185e90f9d9SHong Zhang /* scale the diagonal part */ 1619a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1620a30f8f8cSSatish Balay 16215e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1622ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16230298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1624a30f8f8cSSatish Balay PetscFunctionReturn(0); 1625a30f8f8cSSatish Balay } 1626a30f8f8cSSatish Balay 1627dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1628a30f8f8cSSatish Balay { 1629f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1630dfbe8321SBarry Smith PetscErrorCode ierr; 1631a30f8f8cSSatish Balay 1632a30f8f8cSSatish Balay PetscFunctionBegin; 1633a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1634a30f8f8cSSatish Balay PetscFunctionReturn(0); 1635a30f8f8cSSatish Balay } 1636a30f8f8cSSatish Balay 16376849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1638a30f8f8cSSatish Balay 1639ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1640a30f8f8cSSatish Balay { 1641a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1642a30f8f8cSSatish Balay Mat a,b,c,d; 1643ace3abfcSBarry Smith PetscBool flg; 1644dfbe8321SBarry Smith PetscErrorCode ierr; 1645a30f8f8cSSatish Balay 1646a30f8f8cSSatish Balay PetscFunctionBegin; 1647a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1648a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1649a30f8f8cSSatish Balay 1650a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1651abc0a331SBarry Smith if (flg) { 1652a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1653a30f8f8cSSatish Balay } 1654b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1655a30f8f8cSSatish Balay PetscFunctionReturn(0); 1656a30f8f8cSSatish Balay } 1657a30f8f8cSSatish Balay 16583c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16593c896bc6SHong Zhang { 16603c896bc6SHong Zhang PetscErrorCode ierr; 16614c7a3774SStefano Zampini PetscBool isbaij; 16623c896bc6SHong Zhang 16633c896bc6SHong Zhang PetscFunctionBegin; 16644c7a3774SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr); 16654c7a3774SStefano Zampini if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 16663c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16673c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1668d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16693c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1670d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16713c896bc6SHong Zhang } else { 16724c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16734c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16744c7a3774SStefano Zampini 16753c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16763c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 16773c896bc6SHong Zhang } 1678cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 16793c896bc6SHong Zhang PetscFunctionReturn(0); 16803c896bc6SHong Zhang } 16813c896bc6SHong Zhang 16824994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1683273d9f13SBarry Smith { 1684dfbe8321SBarry Smith PetscErrorCode ierr; 1685273d9f13SBarry Smith 1686273d9f13SBarry Smith PetscFunctionBegin; 1687f4259b30SLisandro Dalcin ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL);CHKERRQ(ierr); 1688273d9f13SBarry Smith PetscFunctionReturn(0); 1689273d9f13SBarry Smith } 1690a5e6ed63SBarry Smith 16914fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16924fe895cdSHong Zhang { 16934fe895cdSHong Zhang PetscErrorCode ierr; 16944fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16954fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16964fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16974fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16984fe895cdSHong Zhang 16994fe895cdSHong Zhang PetscFunctionBegin; 17004fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17014fe895cdSHong Zhang PetscScalar alpha = a; 17024fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 17034fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1704c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 17058b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 17064fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 17074fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1708c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 17098b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1710a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1711ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1712ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1713ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1714ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 17154fe895cdSHong Zhang } else { 17164de5dceeSHong Zhang Mat B; 17174de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 17184de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1719d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 17204de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 17214de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 17224de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 17234de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 17244de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 17254de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 17264de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 17274de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 17284de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 17294de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 17304de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 17314de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 173228be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 17334de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 17344de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1735d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 17364de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 17374fe895cdSHong Zhang } 17384fe895cdSHong Zhang PetscFunctionReturn(0); 17394fe895cdSHong Zhang } 17404fe895cdSHong Zhang 17417dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1742a5e6ed63SBarry Smith { 17436849ba73SBarry Smith PetscErrorCode ierr; 17441302d50aSBarry Smith PetscInt i; 1745afebec48SHong Zhang PetscBool flg; 1746a5e6ed63SBarry Smith 17476849ba73SBarry Smith PetscFunctionBegin; 17487dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1749a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1750a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1751afebec48SHong Zhang if (!flg) { 1752b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1753a5e6ed63SBarry Smith } 17544dcd73b1SHong Zhang } 1755a5e6ed63SBarry Smith PetscFunctionReturn(0); 1756a5e6ed63SBarry Smith } 1757a5e6ed63SBarry Smith 17587d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17597d68702bSBarry Smith { 17607d68702bSBarry Smith PetscErrorCode ierr; 17617d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17626f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17637d68702bSBarry Smith 17647d68702bSBarry Smith PetscFunctionBegin; 17656f33a894SBarry Smith if (!Y->preallocated) { 17667d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 17676f33a894SBarry Smith } else if (!aij->nz) { 1768b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17696f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1770b83222d8SBarry Smith aij->nonew = nonew; 17717d68702bSBarry Smith } 17727d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 17737d68702bSBarry Smith PetscFunctionReturn(0); 17747d68702bSBarry Smith } 17757d68702bSBarry Smith 17763b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 17773b49f96aSBarry Smith { 17783b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 17793b49f96aSBarry Smith PetscErrorCode ierr; 17803b49f96aSBarry Smith 17813b49f96aSBarry Smith PetscFunctionBegin; 17823b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 17833b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 17843b49f96aSBarry Smith if (d) { 17853b49f96aSBarry Smith PetscInt rstart; 17863b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 17873b49f96aSBarry Smith *d += rstart/A->rmap->bs; 17883b49f96aSBarry Smith 17893b49f96aSBarry Smith } 17903b49f96aSBarry Smith PetscFunctionReturn(0); 17913b49f96aSBarry Smith } 17923b49f96aSBarry Smith 1793a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1794a5b7ff6bSBarry Smith { 1795a5b7ff6bSBarry Smith PetscFunctionBegin; 1796a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1797a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1798a5b7ff6bSBarry Smith } 17993b49f96aSBarry Smith 1800a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 18013964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1802a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1803a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1804a9d4b620SHong Zhang MatMult_MPISBAIJ, 180597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1806431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1807431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1808f4259b30SLisandro Dalcin NULL, 1809f4259b30SLisandro Dalcin NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin /* 10*/ NULL, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 181441f059aeSBarry Smith MatSOR_MPISBAIJ, 1815a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 181697304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1817a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1818a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1819a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1820a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 182197304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1822a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1823a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1824a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1825f4259b30SLisandro Dalcin /* 24*/ NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin NULL, 18304994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 1833a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1834f4259b30SLisandro Dalcin NULL, 1835d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin NULL, 1840d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18417dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1842d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1843a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18443c896bc6SHong Zhang MatCopy_MPISBAIJ, 1845f4259b30SLisandro Dalcin /* 44*/ NULL, 1846a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18477d68702bSBarry Smith MatShift_MPISBAIJ, 1848f4259b30SLisandro Dalcin NULL, 1849f4259b30SLisandro Dalcin NULL, 1850f4259b30SLisandro Dalcin /* 49*/ NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin /* 54*/ NULL, 1856f4259b30SLisandro Dalcin NULL, 1857a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1858f4259b30SLisandro Dalcin NULL, 1859a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18607dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin NULL, 1864f4259b30SLisandro Dalcin NULL, 1865f4259b30SLisandro Dalcin /* 64*/ NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin NULL, 1869f4259b30SLisandro Dalcin NULL, 1870d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1871f4259b30SLisandro Dalcin NULL, 187228d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1873f4259b30SLisandro Dalcin NULL, 1874f4259b30SLisandro Dalcin NULL, 1875f4259b30SLisandro Dalcin /* 74*/ NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin NULL, 1879f4259b30SLisandro Dalcin NULL, 1880f4259b30SLisandro Dalcin /* 79*/ NULL, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin NULL, 18845bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1885f4259b30SLisandro Dalcin /* 84*/ NULL, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin /* 89*/ NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin NULL, 1894f4259b30SLisandro Dalcin NULL, 1895f4259b30SLisandro Dalcin /* 94*/ NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin /* 99*/ NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903*2726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1904f4259b30SLisandro Dalcin NULL, 1905f4259b30SLisandro Dalcin /*104*/ NULL, 190699cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1907d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1908d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 190995936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1910f4259b30SLisandro Dalcin /*109*/ NULL, 1911f4259b30SLisandro Dalcin NULL, 1912f4259b30SLisandro Dalcin NULL, 1913f4259b30SLisandro Dalcin NULL, 19143b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1915f4259b30SLisandro Dalcin /*114*/ NULL, 1916f4259b30SLisandro Dalcin NULL, 1917f4259b30SLisandro Dalcin NULL, 1918f4259b30SLisandro Dalcin NULL, 1919f4259b30SLisandro Dalcin NULL, 1920f4259b30SLisandro Dalcin /*119*/ NULL, 1921f4259b30SLisandro Dalcin NULL, 1922f4259b30SLisandro Dalcin NULL, 1923f4259b30SLisandro Dalcin NULL, 1924f4259b30SLisandro Dalcin NULL, 1925f4259b30SLisandro Dalcin /*124*/ NULL, 1926f4259b30SLisandro Dalcin NULL, 1927f4259b30SLisandro Dalcin NULL, 1928f4259b30SLisandro Dalcin NULL, 1929f4259b30SLisandro Dalcin NULL, 1930f4259b30SLisandro Dalcin /*129*/ NULL, 1931f4259b30SLisandro Dalcin NULL, 1932f4259b30SLisandro Dalcin NULL, 1933f4259b30SLisandro Dalcin NULL, 1934f4259b30SLisandro Dalcin NULL, 1935f4259b30SLisandro Dalcin /*134*/ NULL, 1936f4259b30SLisandro Dalcin NULL, 1937f4259b30SLisandro Dalcin NULL, 1938f4259b30SLisandro Dalcin NULL, 1939f4259b30SLisandro Dalcin NULL, 194046533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1941f4259b30SLisandro Dalcin NULL, 1942f4259b30SLisandro Dalcin NULL, 1943f4259b30SLisandro Dalcin NULL, 1944f4259b30SLisandro Dalcin NULL, 194559f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 194699cafbc1SBarry Smith }; 1947a30f8f8cSSatish Balay 1948b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1949a23d5eceSKris Buschelman { 1950476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 1951dfbe8321SBarry Smith PetscErrorCode ierr; 1952535b19f3SBarry Smith PetscInt i,mbs,Mbs; 19535d2a9ed1SStefano Zampini PetscMPIInt size; 1954a23d5eceSKris Buschelman 1955a23d5eceSKris Buschelman PetscFunctionBegin; 195633d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 195726283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 195826283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1959e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1960476417e5SBarry Smith if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N); 1961476417e5SBarry Smith if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n); 1962899cda47SBarry Smith 1963d0f46423SBarry Smith mbs = B->rmap->n/bs; 1964d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1965c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1966a23d5eceSKris Buschelman 1967d0f46423SBarry Smith B->rmap->bs = bs; 1968a23d5eceSKris Buschelman b->bs2 = bs*bs; 1969a23d5eceSKris Buschelman b->mbs = mbs; 1970a23d5eceSKris Buschelman b->Mbs = Mbs; 1971de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1972de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1973a23d5eceSKris Buschelman 1974a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1975d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1976a23d5eceSKris Buschelman } 1977d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1978d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1979a23d5eceSKris Buschelman 1980d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1981d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1982a23d5eceSKris Buschelman 1983cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1984cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 1985cb7b82ddSBarry Smith #else 1986cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 1987cb7b82ddSBarry Smith #endif 1988cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 1989cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 1990cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 1991cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 1992cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 1993cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 1994cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 1995cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 1996cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 1997cb7b82ddSBarry Smith 1998cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 1999ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr); 2000cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2001cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 20025d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 2003cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2004cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2005cb7b82ddSBarry Smith 2006526dfc15SBarry Smith if (!B->preallocated) { 2007f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2008d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 20099c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 20103bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2011ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2012526dfc15SBarry Smith } 2013a23d5eceSKris Buschelman 2014526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2015526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 201626fbe8dcSKarl Rupp 2017526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2018cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2019cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2020a23d5eceSKris Buschelman PetscFunctionReturn(0); 2021a23d5eceSKris Buschelman } 2022a23d5eceSKris Buschelman 2023dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2024dfb205c3SBarry Smith { 202502106b30SBarry Smith PetscInt m,rstart,cend; 2026f4259b30SLisandro Dalcin PetscInt i,j,d,nz,bd, nz_max=0,*d_nnz=NULL,*o_nnz=NULL; 2027f4259b30SLisandro Dalcin const PetscInt *JJ =NULL; 2028f4259b30SLisandro Dalcin PetscScalar *values=NULL; 2029bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented; 2030dfb205c3SBarry Smith PetscErrorCode ierr; 20313bd0feecSPierre Jolivet PetscBool nooffprocentries; 2032dfb205c3SBarry Smith 2033dfb205c3SBarry Smith PetscFunctionBegin; 2034ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2035dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2036dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2037dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2038dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2039e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2040dfb205c3SBarry Smith m = B->rmap->n/bs; 2041dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2042dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2043dfb205c3SBarry Smith 2044dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2045dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2046dfb205c3SBarry Smith for (i=0; i<m; i++) { 2047dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2048dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 20490cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2050dfb205c3SBarry Smith JJ = jj + ii[i]; 20510cd7f59aSBarry Smith bd = 0; 2052dfb205c3SBarry Smith for (j=0; j<nz; j++) { 20530cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2054dfb205c3SBarry Smith JJ++; 20550cd7f59aSBarry Smith bd++; 2056dfb205c3SBarry Smith } 2057dfb205c3SBarry Smith d = 0; 2058dfb205c3SBarry Smith for (; j<nz; j++) { 2059dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2060dfb205c3SBarry Smith d++; 2061dfb205c3SBarry Smith } 2062dfb205c3SBarry Smith d_nnz[i] = d; 20630cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20640cd7f59aSBarry Smith nz = nz - bd; 20650cd7f59aSBarry Smith nz_max = PetscMax(nz_max,nz); 2066dfb205c3SBarry Smith } 2067dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2068bb80cfbbSStefano Zampini ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 2069dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2070dfb205c3SBarry Smith 2071dfb205c3SBarry Smith values = (PetscScalar*)V; 2072dfb205c3SBarry Smith if (!values) { 2073580bdb30SBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2074dfb205c3SBarry Smith } 2075dfb205c3SBarry Smith for (i=0; i<m; i++) { 2076dfb205c3SBarry Smith PetscInt row = i + rstart; 2077dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2078dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2079bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2080dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2081dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2082bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2083bb80cfbbSStefano Zampini PetscInt j; 20840cd7f59aSBarry Smith for (j=0; j<ncols; j++) { 20850cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 20860cd7f59aSBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 20870cd7f59aSBarry Smith } 20880cd7f59aSBarry Smith } 2089dfb205c3SBarry Smith } 2090dfb205c3SBarry Smith 2091dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 20923bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20933bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 2094dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2095dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20963bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20973bd0feecSPierre Jolivet 20987827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2099dfb205c3SBarry Smith PetscFunctionReturn(0); 2100dfb205c3SBarry Smith } 2101dfb205c3SBarry Smith 21020bad9183SKris Buschelman /*MC 2103fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2104828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2105828413b8SBarry Smith the matrix is stored. 2106828413b8SBarry Smith 2107828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2108828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 21090bad9183SKris Buschelman 21100bad9183SKris Buschelman Options Database Keys: 21110bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 21120bad9183SKris Buschelman 2113476417e5SBarry Smith Notes: 2114476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2115476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2116476417e5SBarry Smith 21170bad9183SKris Buschelman Level: beginner 21180bad9183SKris Buschelman 2119fd292e60Sprj- .seealso: MatCreateBAIJ(), MATSEQSBAIJ, MatType 21200bad9183SKris Buschelman M*/ 21210bad9183SKris Buschelman 21228cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2123b5df2d14SHong Zhang { 2124b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2125dfbe8321SBarry Smith PetscErrorCode ierr; 212694ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2127b5df2d14SHong Zhang 2128b5df2d14SHong Zhang PetscFunctionBegin; 2129b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2130b0a32e0cSBarry Smith B->data = (void*)b; 2131b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2132b5df2d14SHong Zhang 2133b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2134b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2135b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2136b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 213726fbe8dcSKarl Rupp 2138ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRMPI(ierr); 2139ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRMPI(ierr); 2140b5df2d14SHong Zhang 2141b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2142854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2143b5df2d14SHong Zhang 2144b5df2d14SHong Zhang /* build cache for off array entries formed */ 2145ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 214626fbe8dcSKarl Rupp 2147b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21480298fd71SBarry Smith b->colmap = NULL; 21490298fd71SBarry Smith b->garray = NULL; 2150b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2151b5df2d14SHong Zhang 2152b5df2d14SHong Zhang /* stuff used in block assembly */ 2153f4259b30SLisandro Dalcin b->barray = NULL; 2154b5df2d14SHong Zhang 2155b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2156f4259b30SLisandro Dalcin b->lvec = NULL; 2157f4259b30SLisandro Dalcin b->Mvctx = NULL; 2158f4259b30SLisandro Dalcin b->slvec0 = NULL; 2159f4259b30SLisandro Dalcin b->slvec0b = NULL; 2160f4259b30SLisandro Dalcin b->slvec1 = NULL; 2161f4259b30SLisandro Dalcin b->slvec1a = NULL; 2162f4259b30SLisandro Dalcin b->slvec1b = NULL; 2163f4259b30SLisandro Dalcin b->sMvctx = NULL; 2164b5df2d14SHong Zhang 2165b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2166f4259b30SLisandro Dalcin b->rowindices = NULL; 2167f4259b30SLisandro Dalcin b->rowvalues = NULL; 2168b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2169b5df2d14SHong Zhang 2170b5df2d14SHong Zhang /* hash table stuff */ 2171f4259b30SLisandro Dalcin b->ht = NULL; 2172f4259b30SLisandro Dalcin b->hd = NULL; 2173b5df2d14SHong Zhang b->ht_size = 0; 2174b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2175b5df2d14SHong Zhang b->ht_fact = 0; 2176b5df2d14SHong Zhang b->ht_total_ct = 0; 2177b5df2d14SHong Zhang b->ht_insert_ct = 0; 2178b5df2d14SHong Zhang 21797dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21807a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21817a868f3eSHong Zhang 2182f4259b30SLisandro Dalcin b->in_loc = NULL; 2183f4259b30SLisandro Dalcin b->v_loc = NULL; 218459ffdab8SBarry Smith b->n_loc = 0; 218594ae4db5SBarry Smith 2186bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2187bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2188bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2189bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 21906214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21916214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 21926214f412SHong Zhang #endif 2193d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2194d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK);CHKERRQ(ierr); 2195d24d4204SJose E. Roman #endif 219628d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 219728d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 2198aa5a9175SDahai Guo 219923ce1328SBarry Smith B->symmetric = PETSC_TRUE; 220023ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 220123ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 220223ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 22039899f194SHong Zhang B->symmetric_eternal = PETSC_TRUE; 2204eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 220513647f61SHong Zhang B->hermitian = PETSC_FALSE; 220613647f61SHong Zhang B->hermitian_set = PETSC_FALSE; 2207eb1ec7c1SStefano Zampini #else 2208eb1ec7c1SStefano Zampini B->hermitian = PETSC_TRUE; 2209eb1ec7c1SStefano Zampini B->hermitian_set = PETSC_TRUE; 2210eb1ec7c1SStefano Zampini #endif 221113647f61SHong Zhang 221217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 221394ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 221494ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 221594ae4db5SBarry Smith if (flg) { 221694ae4db5SBarry Smith PetscReal fact = 1.39; 221794ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 221894ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 221994ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 222094ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 222194ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 222294ae4db5SBarry Smith } 222394ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2224b5df2d14SHong Zhang PetscFunctionReturn(0); 2225b5df2d14SHong Zhang } 2226b5df2d14SHong Zhang 2227209238afSKris Buschelman /*MC 2228002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2229209238afSKris Buschelman 2230209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2231209238afSKris Buschelman and MATMPISBAIJ otherwise. 2232209238afSKris Buschelman 2233209238afSKris Buschelman Options Database Keys: 2234209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2235209238afSKris Buschelman 2236209238afSKris Buschelman Level: beginner 2237209238afSKris Buschelman 2238209238afSKris Buschelman .seealso: MatCreateMPISBAIJ, MATSEQSBAIJ, MATMPISBAIJ 2239209238afSKris Buschelman M*/ 2240209238afSKris Buschelman 2241b5df2d14SHong Zhang /*@C 2242b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2243b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2244b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2245b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2246b5df2d14SHong Zhang 2247b5df2d14SHong Zhang Collective on Mat 2248b5df2d14SHong Zhang 2249b5df2d14SHong Zhang Input Parameters: 22501c4f3114SJed Brown + B - the matrix 2251bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2252bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2253b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2254b5df2d14SHong Zhang submatrix (same for all local rows) 2255b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22566d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22570298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 225895742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2259b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2260b5df2d14SHong Zhang submatrix (same for all local rows). 2261b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2262c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22630298fd71SBarry Smith (possibly different for each block row) or NULL. 2264b5df2d14SHong Zhang 2265b5df2d14SHong Zhang 2266b5df2d14SHong Zhang Options Database Keys: 2267a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2268b5df2d14SHong Zhang block calculations (much slower) 2269a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2270b5df2d14SHong Zhang 2271b5df2d14SHong Zhang Notes: 2272b5df2d14SHong Zhang 2273b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2274b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2275b5df2d14SHong Zhang 227649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 227749a6f317SBarry Smith 2278b5df2d14SHong Zhang Storage Information: 2279b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2280b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2281b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2282b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2283b5df2d14SHong Zhang 2284b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2285b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 22860298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2287b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2288b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2289b5df2d14SHong Zhang 2290aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2291aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2292aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2293aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2294aa95bbe8SBarry Smith 2295b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2296b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2297b5df2d14SHong Zhang 2298b5df2d14SHong Zhang .vb 2299b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2300a4b1a0f6SJed Brown -------------------------- 2301c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2302c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2303c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2304a4b1a0f6SJed Brown -------------------------- 2305b5df2d14SHong Zhang .ve 2306b5df2d14SHong Zhang 2307b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2308b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 23096d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23106d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2311b5df2d14SHong Zhang 23126d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23136d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2314c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2315c2fc9fa9SBarry Smith 2316b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2317b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2318b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2319b5df2d14SHong Zhang matrices. 2320b5df2d14SHong Zhang 2321b5df2d14SHong Zhang Level: intermediate 2322b5df2d14SHong Zhang 2323ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2324b5df2d14SHong Zhang @*/ 23257087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2326b5df2d14SHong Zhang { 23274ac538c5SBarry Smith PetscErrorCode ierr; 2328b5df2d14SHong Zhang 2329b5df2d14SHong Zhang PetscFunctionBegin; 23306ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 23316ba663aaSJed Brown PetscValidType(B,1); 23326ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 23334ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2334b5df2d14SHong Zhang PetscFunctionReturn(0); 2335b5df2d14SHong Zhang } 2336b5df2d14SHong Zhang 2337a30f8f8cSSatish Balay /*@C 233869b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2339a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2340a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2341a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2342a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2343a30f8f8cSSatish Balay 2344d083f849SBarry Smith Collective 2345a30f8f8cSSatish Balay 2346a30f8f8cSSatish Balay Input Parameters: 2347a30f8f8cSSatish Balay + comm - MPI communicator 2348bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2349bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2350a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2351a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2352a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2353a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2354a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2355a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2356a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2357a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2358a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2359a30f8f8cSSatish Balay submatrix (same for all local rows) 2360a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23616d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23620298fd71SBarry Smith (possibly different for each block block row) or NULL. 236395742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 236495742e49SBarry Smith set its value even if it is zero. 2365a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2366a30f8f8cSSatish Balay submatrix (same for all local rows). 2367a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2368a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23690298fd71SBarry Smith each block row) or NULL. 2370a30f8f8cSSatish Balay 2371a30f8f8cSSatish Balay Output Parameter: 2372a30f8f8cSSatish Balay . A - the matrix 2373a30f8f8cSSatish Balay 2374a30f8f8cSSatish Balay Options Database Keys: 2375a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2376a30f8f8cSSatish Balay block calculations (much slower) 2377a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2378a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2379a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2380a30f8f8cSSatish Balay 2381175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2382f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2383175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2384175b88e8SBarry Smith 2385a30f8f8cSSatish Balay Notes: 2386d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23876d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2388d1be2dadSMatthew Knepley 2389a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2390a30f8f8cSSatish Balay (possibly both). 2391a30f8f8cSSatish Balay 2392a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2393a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2394a30f8f8cSSatish Balay 239549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 239649a6f317SBarry Smith 2397a30f8f8cSSatish Balay Storage Information: 2398a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2399a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2400a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2401a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2402a30f8f8cSSatish Balay 2403a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2404a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 24050298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2406a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2407a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2408a30f8f8cSSatish Balay 2409a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2410a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay .vb 2413a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2414a4b1a0f6SJed Brown -------------------------- 2415c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2416c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2417c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2418a4b1a0f6SJed Brown -------------------------- 2419a30f8f8cSSatish Balay .ve 2420a30f8f8cSSatish Balay 2421a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2422a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24236d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24246d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2425a30f8f8cSSatish Balay 24266d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 24276d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2428a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2429a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2430a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2431a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2432a30f8f8cSSatish Balay matrices. 2433a30f8f8cSSatish Balay 2434a30f8f8cSSatish Balay Level: intermediate 2435a30f8f8cSSatish Balay 243669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2437a30f8f8cSSatish Balay @*/ 2438a30f8f8cSSatish Balay 243969b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2440a30f8f8cSSatish Balay { 24416849ba73SBarry Smith PetscErrorCode ierr; 24421302d50aSBarry Smith PetscMPIInt size; 2443a30f8f8cSSatish Balay 2444a30f8f8cSSatish Balay PetscFunctionBegin; 2445f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2446f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2447ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2448273d9f13SBarry Smith if (size > 1) { 2449b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2450b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2451273d9f13SBarry Smith } else { 2452273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2453273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2454273d9f13SBarry Smith } 2455a30f8f8cSSatish Balay PetscFunctionReturn(0); 2456a30f8f8cSSatish Balay } 2457a30f8f8cSSatish Balay 2458a30f8f8cSSatish Balay 24596849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2460a30f8f8cSSatish Balay { 2461a30f8f8cSSatish Balay Mat mat; 2462a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2463dfbe8321SBarry Smith PetscErrorCode ierr; 2464d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2465387bc808SHong Zhang PetscScalar *array; 2466a30f8f8cSSatish Balay 2467a30f8f8cSSatish Balay PetscFunctionBegin; 2468f4259b30SLisandro Dalcin *newmat = NULL; 246926fbe8dcSKarl Rupp 2470ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2471d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 24727adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 24731e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 24741e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2475e1b6402fSHong Zhang 2476d5f3da31SBarry Smith mat->factortype = matin->factortype; 2477273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 247882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24797fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24807fff6886SHong Zhang 2481b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2482a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2483a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2484a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2485a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2486a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2487a30f8f8cSSatish Balay 2488a30f8f8cSSatish Balay a->size = oldmat->size; 2489a30f8f8cSSatish Balay a->rank = oldmat->rank; 2490a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2491a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2492f4259b30SLisandro Dalcin a->rowindices = NULL; 2493f4259b30SLisandro Dalcin a->rowvalues = NULL; 2494a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2495f4259b30SLisandro Dalcin a->barray = NULL; 2496899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2497899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2498899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2499899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2500a30f8f8cSSatish Balay 2501a30f8f8cSSatish Balay /* hash table stuff */ 2502f4259b30SLisandro Dalcin a->ht = NULL; 2503f4259b30SLisandro Dalcin a->hd = NULL; 2504a30f8f8cSSatish Balay a->ht_size = 0; 2505a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2506a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2507a30f8f8cSSatish Balay a->ht_total_ct = 0; 2508a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2509a30f8f8cSSatish Balay 2510580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr); 2511a30f8f8cSSatish Balay if (oldmat->colmap) { 2512a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2513a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2514a30f8f8cSSatish Balay #else 2515854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 25163bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2517580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 2518a30f8f8cSSatish Balay #endif 2519f4259b30SLisandro Dalcin } else a->colmap = NULL; 2520387bc808SHong Zhang 2521a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2522785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 25233bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2524580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 2525f4259b30SLisandro Dalcin } else a->garray = NULL; 2526a30f8f8cSSatish Balay 2527ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2528a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 25293bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2530a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 25313bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 253282327fa8SHong Zhang 253382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 25343bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 253582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 25363bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2537387bc808SHong Zhang 2538387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 25391ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2540778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2541778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 25421ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 25431ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2544778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 25451ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 25463bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 25473bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 25483bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 25493bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 25503bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2551387bc808SHong Zhang 2552387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2553387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2554387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 25553bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 255682327fa8SHong Zhang 2557a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2559a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 25603bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2561140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2562a30f8f8cSSatish Balay *newmat = mat; 2563a30f8f8cSSatish Balay PetscFunctionReturn(0); 2564a30f8f8cSSatish Balay } 2565a30f8f8cSSatish Balay 2566618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2567618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2568618cc2edSLisandro Dalcin 2569618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer) 257095936485SShri Abhyankar { 257195936485SShri Abhyankar PetscErrorCode ierr; 25727f489da9SVaclav Hapla PetscBool isbinary; 257395936485SShri Abhyankar 257495936485SShri Abhyankar PetscFunctionBegin; 25757f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 2576618cc2edSLisandro Dalcin if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 2577618cc2edSLisandro Dalcin ierr = MatLoad_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 257895936485SShri Abhyankar PetscFunctionReturn(0); 257995936485SShri Abhyankar } 258095936485SShri Abhyankar 2581dcf5cc72SBarry Smith /*XXXXX@ 2582a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2583a30f8f8cSSatish Balay 2584a30f8f8cSSatish Balay Input Parameters: 2585a30f8f8cSSatish Balay . mat - the matrix 2586a30f8f8cSSatish Balay . fact - factor 2587a30f8f8cSSatish Balay 2588c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2589a30f8f8cSSatish Balay 2590a30f8f8cSSatish Balay Level: advanced 2591a30f8f8cSSatish Balay 2592a30f8f8cSSatish Balay Notes: 2593a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2594a30f8f8cSSatish Balay 2595a30f8f8cSSatish Balay .seealso: MatSetOption() 2596dcf5cc72SBarry Smith @XXXXX*/ 2597dcf5cc72SBarry Smith 259824d5174aSHong Zhang 2599985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 260024d5174aSHong Zhang { 260124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2602f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2603ca54ac64SHong Zhang PetscReal atmp; 260487828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2605dfbe8321SBarry Smith PetscErrorCode ierr; 26061302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 26071302d50aSBarry Smith PetscMPIInt rank,size; 26081302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 260987828ca2SBarry Smith PetscScalar *va; 26108a1c53f2SBarry Smith MatScalar *ba; 2611f4c0e9e4SHong Zhang MPI_Status stat; 261224d5174aSHong Zhang 261324d5174aSHong Zhang PetscFunctionBegin; 2614e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 26150298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 26161ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2617f4c0e9e4SHong Zhang 2618ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 2619ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRMPI(ierr); 2620f4c0e9e4SHong Zhang 2621d0f46423SBarry Smith bs = A->rmap->bs; 2622f4c0e9e4SHong Zhang mbs = a->mbs; 2623f4c0e9e4SHong Zhang Mbs = a->Mbs; 2624f4c0e9e4SHong Zhang ba = b->a; 2625f4c0e9e4SHong Zhang bi = b->i; 2626f4c0e9e4SHong Zhang bj = b->j; 2627f4c0e9e4SHong Zhang 2628f4c0e9e4SHong Zhang /* find ownerships */ 2629d0f46423SBarry Smith rowners_bs = A->rmap->range; 2630f4c0e9e4SHong Zhang 2631f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2632580bdb30SBarry Smith ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2633f4c0e9e4SHong Zhang 2634f4c0e9e4SHong Zhang /* row_max for B */ 2635b8475685SHong Zhang if (rank != size-1) { 2636f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2637f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2638f4c0e9e4SHong Zhang brow = bs*i; 2639f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2640f4c0e9e4SHong Zhang bcol = bs*(*bj); 2641f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2642ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 264304d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2644f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2645f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2646ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2647ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2648f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2649f4c0e9e4SHong Zhang } 2650f4c0e9e4SHong Zhang } 2651f4c0e9e4SHong Zhang bj++; 2652f4c0e9e4SHong Zhang } 2653f4c0e9e4SHong Zhang } 2654f4c0e9e4SHong Zhang 2655f4c0e9e4SHong Zhang /* send values to its owners */ 2656f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2657f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2658ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 265955b25c41SPierre Jolivet ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 2660ca54ac64SHong Zhang } 2661f4c0e9e4SHong Zhang } 2662f4c0e9e4SHong Zhang 2663f4c0e9e4SHong Zhang /* receive values */ 2664ca54ac64SHong Zhang if (rank) { 2665f4c0e9e4SHong Zhang rvalues = work; 2666ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2667f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2668ffc4695bSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRMPI(ierr); 2669f4c0e9e4SHong Zhang /* process values */ 2670f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2671ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2672f4c0e9e4SHong Zhang } 2673f4c0e9e4SHong Zhang } 2674ca54ac64SHong Zhang } 2675f4c0e9e4SHong Zhang 26761ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2677ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 267824d5174aSHong Zhang PetscFunctionReturn(0); 267924d5174aSHong Zhang } 26802798e883SHong Zhang 268141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 26822798e883SHong Zhang { 26832798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2684dfbe8321SBarry Smith PetscErrorCode ierr; 2685d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 26863649974fSBarry Smith PetscScalar *x,*ptr,*from; 2687ffe4fb16SHong Zhang Vec bb1; 26883649974fSBarry Smith const PetscScalar *b; 2689ffe4fb16SHong Zhang 2690ffe4fb16SHong Zhang PetscFunctionBegin; 2691e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2692e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2693ffe4fb16SHong Zhang 2694a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 269541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2696a2b30743SBarry Smith PetscFunctionReturn(0); 2697a2b30743SBarry Smith } 2698a2b30743SBarry Smith 2699ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2700ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 270141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2702ffe4fb16SHong Zhang its--; 2703ffe4fb16SHong Zhang } 2704ffe4fb16SHong Zhang 2705ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2706ffe4fb16SHong Zhang while (its--) { 2707ffe4fb16SHong Zhang 2708ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2709ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2710ffe4fb16SHong Zhang 2711ffe4fb16SHong Zhang /* copy xx into slvec0a */ 27121ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 27131ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2714580bdb30SBarry Smith ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr); 27151ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2716ffe4fb16SHong Zhang 2717efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2718ffe4fb16SHong Zhang 2719ffe4fb16SHong Zhang /* copy bb into slvec1a */ 27201ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 27213649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2722580bdb30SBarry Smith ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr); 27231ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2724ffe4fb16SHong Zhang 2725ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2726fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2727ffe4fb16SHong Zhang 2728ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27291ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2730a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2731ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2732ffe4fb16SHong Zhang 2733ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2734ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2735ffe4fb16SHong Zhang 2736ffe4fb16SHong Zhang /* local diagonal sweep */ 273741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2738ffe4fb16SHong Zhang } 27396bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2740fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 274141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2742fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 274341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2744fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2745fa22f6d0SBarry Smith Vec xx1; 2746ace3abfcSBarry Smith PetscBool hasop; 274720f1ed55SBarry Smith const PetscScalar *diag; 2748887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 274920f1ed55SBarry Smith PetscInt i,n; 2750fa22f6d0SBarry Smith 2751fa22f6d0SBarry Smith if (!mat->xx1) { 2752fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2753fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2754fa22f6d0SBarry Smith } 2755fa22f6d0SBarry Smith xx1 = mat->xx1; 2756fa22f6d0SBarry Smith bb1 = mat->bb1; 2757fa22f6d0SBarry Smith 275841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2759fa22f6d0SBarry Smith 2760fa22f6d0SBarry Smith if (!mat->diag) { 2761effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27622a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2763fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2764fa22f6d0SBarry Smith } 2765fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2766fa22f6d0SBarry Smith 2767fa22f6d0SBarry Smith if (hasop) { 2768fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2769887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 277020f1ed55SBarry Smith } else { 277120f1ed55SBarry Smith /* 277220f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 277320f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2774887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 277520f1ed55SBarry Smith */ 277620f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27773649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27783649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 277920f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 278020f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2781887ee2caSBarry Smith if (omega == 1.0) { 278226fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 278320f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2784887ee2caSBarry Smith } else { 278526fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2786887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2787887ee2caSBarry Smith } 278820f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27893649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27903649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 279120f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 279220f1ed55SBarry Smith } 2793fa22f6d0SBarry Smith 2794fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2795fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2796fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2797fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2798fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2799580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 2800fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2801fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2802fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2803fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2804effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2805fa22f6d0SBarry Smith 2806fa22f6d0SBarry Smith /* local sweep */ 280741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2808fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2809f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2810ffe4fb16SHong Zhang PetscFunctionReturn(0); 2811ffe4fb16SHong Zhang } 2812ffe4fb16SHong Zhang 2813dfb205c3SBarry Smith /*@ 2814dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2815dfb205c3SBarry Smith CSR format the local rows. 2816dfb205c3SBarry Smith 2817d083f849SBarry Smith Collective 2818dfb205c3SBarry Smith 2819dfb205c3SBarry Smith Input Parameters: 2820dfb205c3SBarry Smith + comm - MPI communicator 2821dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2822dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2823dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2824dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2825dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2826dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2827dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2828483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2829dfb205c3SBarry Smith . j - column indices 2830dfb205c3SBarry Smith - a - matrix values 2831dfb205c3SBarry Smith 2832dfb205c3SBarry Smith Output Parameter: 2833dfb205c3SBarry Smith . mat - the matrix 2834dfb205c3SBarry Smith 2835dfb205c3SBarry Smith Level: intermediate 2836dfb205c3SBarry Smith 2837dfb205c3SBarry Smith Notes: 2838dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2839dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2840dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2841dfb205c3SBarry Smith 2842dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2843dfb205c3SBarry Smith 2844dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 284569b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2846dfb205c3SBarry Smith @*/ 28477087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2848dfb205c3SBarry Smith { 2849dfb205c3SBarry Smith PetscErrorCode ierr; 2850dfb205c3SBarry Smith 2851dfb205c3SBarry Smith 2852dfb205c3SBarry Smith PetscFunctionBegin; 2853f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2854dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2855dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2856dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2857dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2858dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2859dfb205c3SBarry Smith PetscFunctionReturn(0); 2860dfb205c3SBarry Smith } 2861dfb205c3SBarry Smith 2862dfb205c3SBarry Smith 2863dfb205c3SBarry Smith /*@C 2864664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 2865dfb205c3SBarry Smith 2866d083f849SBarry Smith Collective 2867dfb205c3SBarry Smith 2868dfb205c3SBarry Smith Input Parameters: 28691c4f3114SJed Brown + B - the matrix 2870dfb205c3SBarry Smith . bs - the block size 2871dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2872dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2873dfb205c3SBarry Smith - v - optional values in the matrix 2874dfb205c3SBarry Smith 2875664954b6SBarry Smith Level: advanced 2876664954b6SBarry Smith 2877664954b6SBarry Smith Notes: 28780cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28790cd7f59aSBarry Smith and usually the numerical values as well 28800cd7f59aSBarry Smith 288150c5228eSBarry Smith Any entries below the diagonal are ignored 2882dfb205c3SBarry Smith 288369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2884dfb205c3SBarry Smith @*/ 28857087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2886dfb205c3SBarry Smith { 28874ac538c5SBarry Smith PetscErrorCode ierr; 2888dfb205c3SBarry Smith 2889dfb205c3SBarry Smith PetscFunctionBegin; 28904ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2891dfb205c3SBarry Smith PetscFunctionReturn(0); 2892dfb205c3SBarry Smith } 2893dfb205c3SBarry Smith 289410c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 28954dcd73b1SHong Zhang { 28964dcd73b1SHong Zhang PetscErrorCode ierr; 289710c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 289810c56fdeSHong Zhang PetscInt *indx; 289910c56fdeSHong Zhang PetscScalar *values; 2900dfb205c3SBarry Smith 29014dcd73b1SHong Zhang PetscFunctionBegin; 29024dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 290310c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 290410c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 2905de25e9cbSPierre Jolivet PetscInt *dnz,*onz,mbs,Nbs,nbs; 290610c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 2907de25e9cbSPierre Jolivet PetscMPIInt rank,size; 29084dcd73b1SHong Zhang 290910c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 291010c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 291110c56fdeSHong Zhang if (n == PETSC_DECIDE) { 2912da91a574SPierre Jolivet ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N); 291310c56fdeSHong Zhang } 2914da91a574SPierre Jolivet nbs = n/cbs; 29154dcd73b1SHong Zhang 29164dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 2917de25e9cbSPierre Jolivet ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 2918de25e9cbSPierre Jolivet 2919ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 2920ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&size);CHKERRMPI(ierr); 2921de25e9cbSPierre Jolivet if (rank == size-1) { 2922de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 2923de25e9cbSPierre Jolivet if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 2924de25e9cbSPierre Jolivet } 2925de25e9cbSPierre Jolivet 2926de25e9cbSPierre Jolivet rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 2927e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 292810c56fdeSHong Zhang for (i=0; i<mbs; i++) { 29294dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 29304dcd73b1SHong Zhang nnz = nnz/bs; 29314dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 29324dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 29334dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 29344dcd73b1SHong Zhang } 2935e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 29364dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 29374dcd73b1SHong Zhang 29384dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 2939de25e9cbSPierre Jolivet ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 29404dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 2941ce94fc41SPierre Jolivet ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr); 2942ce94fc41SPierre Jolivet ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 29434dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 29444dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 29454dcd73b1SHong Zhang } 29464dcd73b1SHong Zhang 294710c56fdeSHong Zhang /* numeric phase */ 29484dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 294910c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 29504dcd73b1SHong Zhang 2951e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 29524dcd73b1SHong Zhang for (i=0; i<m; i++) { 29534dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29544dcd73b1SHong Zhang Ii = i + rstart; 295510c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 29564dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29574dcd73b1SHong Zhang } 2958e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 295910c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 296010c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29614dcd73b1SHong Zhang PetscFunctionReturn(0); 29624dcd73b1SHong Zhang } 2963