xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 2726fb6d4222c245e6af641277217f2da18607f8)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*);
12d24d4204SJose E. Roman #endif
13b147fbf3SStefano Zampini 
14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
16b147fbf3SStefano Zampini {
17b147fbf3SStefano Zampini   Mat            preallocator;
18b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
19b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
20b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
21b147fbf3SStefano Zampini   PetscErrorCode ierr;
22b147fbf3SStefano Zampini 
23b147fbf3SStefano Zampini   PetscFunctionBegin;
24b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
25b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
26b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
27b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
28b147fbf3SStefano Zampini     ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr);
29b147fbf3SStefano Zampini     if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
30b147fbf3SStefano Zampini   }
31b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
32b147fbf3SStefano Zampini   ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr);
33b147fbf3SStefano Zampini   ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr);
34b147fbf3SStefano Zampini   ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr);
35b147fbf3SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr);
36b147fbf3SStefano Zampini   ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr);
37b147fbf3SStefano Zampini   ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr);
38b147fbf3SStefano Zampini   ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr);
39b147fbf3SStefano Zampini   ierr = MatSetUp(preallocator);CHKERRQ(ierr);
40b147fbf3SStefano Zampini   ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr);
41b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
42b147fbf3SStefano Zampini     PetscInt          ncols;
43b147fbf3SStefano Zampini     const PetscInt    *row;
44b147fbf3SStefano Zampini     const PetscScalar *vals;
45b147fbf3SStefano Zampini 
46b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
47b147fbf3SStefano Zampini       ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
48b147fbf3SStefano Zampini       ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
49b147fbf3SStefano Zampini       if (symm && symm[i]) {
50b147fbf3SStefano Zampini         ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
51b147fbf3SStefano Zampini       }
52b147fbf3SStefano Zampini       ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
53b147fbf3SStefano Zampini     }
54b147fbf3SStefano Zampini   }
55b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
56b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
57b147fbf3SStefano Zampini   ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr);
58b147fbf3SStefano Zampini   ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
59b147fbf3SStefano Zampini   PetscFunctionReturn(0);
60b147fbf3SStefano Zampini }
61b147fbf3SStefano Zampini 
6228d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
63b147fbf3SStefano Zampini {
64b147fbf3SStefano Zampini   Mat            B;
65b147fbf3SStefano Zampini   PetscErrorCode ierr;
66b147fbf3SStefano Zampini   PetscInt       r;
67b147fbf3SStefano Zampini 
68b147fbf3SStefano Zampini   PetscFunctionBegin;
69b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
7028d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE,isdense;
71b147fbf3SStefano Zampini     PetscInt  bs;
72b147fbf3SStefano Zampini 
73b147fbf3SStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
74b147fbf3SStefano Zampini     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
75b147fbf3SStefano Zampini     ierr = MatSetType(B,newtype);CHKERRQ(ierr);
76b147fbf3SStefano Zampini     ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr);
77b147fbf3SStefano Zampini     ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr);
78b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
79b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
8028d58a37SPierre Jolivet     ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
8128d58a37SPierre Jolivet     if (!isdense) {
82b147fbf3SStefano Zampini       ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
83b147fbf3SStefano Zampini       ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr);
84b147fbf3SStefano Zampini       ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
8528d58a37SPierre Jolivet     } else {
8628d58a37SPierre Jolivet       ierr = MatSetUp(B);CHKERRQ(ierr);
8728d58a37SPierre Jolivet     }
8828d58a37SPierre Jolivet   } else {
8928d58a37SPierre Jolivet     B    = *newmat;
9028d58a37SPierre Jolivet     ierr = MatZeroEntries(B);CHKERRQ(ierr);
9128d58a37SPierre Jolivet   }
92b147fbf3SStefano Zampini 
93b147fbf3SStefano Zampini   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
94b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
95b147fbf3SStefano Zampini     PetscInt          ncols;
96b147fbf3SStefano Zampini     const PetscInt    *row;
97b147fbf3SStefano Zampini     const PetscScalar *vals;
98b147fbf3SStefano Zampini 
99b147fbf3SStefano Zampini     ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
100b147fbf3SStefano Zampini     ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
101eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
102eb1ec7c1SStefano Zampini     if (A->hermitian) {
103eb1ec7c1SStefano Zampini       PetscInt i;
104eb1ec7c1SStefano Zampini       for (i = 0; i < ncols; i++) {
105eb1ec7c1SStefano Zampini         ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr);
106eb1ec7c1SStefano Zampini       }
107eb1ec7c1SStefano Zampini     } else {
108b147fbf3SStefano Zampini       ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
109eb1ec7c1SStefano Zampini     }
110eb1ec7c1SStefano Zampini #else
111eb1ec7c1SStefano Zampini     ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
112eb1ec7c1SStefano Zampini #endif
113b147fbf3SStefano Zampini     ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
114b147fbf3SStefano Zampini   }
115b147fbf3SStefano Zampini   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
116b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
117b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
118b147fbf3SStefano Zampini 
119b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
120b147fbf3SStefano Zampini     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
121b147fbf3SStefano Zampini   } else {
122b147fbf3SStefano Zampini     *newmat = B;
123b147fbf3SStefano Zampini   }
124b147fbf3SStefano Zampini   PetscFunctionReturn(0);
125b147fbf3SStefano Zampini }
126b147fbf3SStefano Zampini 
1277087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
128a30f8f8cSSatish Balay {
129f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
130dfbe8321SBarry Smith   PetscErrorCode ierr;
131a30f8f8cSSatish Balay 
132a30f8f8cSSatish Balay   PetscFunctionBegin;
133a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
134a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
135a30f8f8cSSatish Balay   PetscFunctionReturn(0);
136a30f8f8cSSatish Balay }
137a30f8f8cSSatish Balay 
1387087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
139a30f8f8cSSatish Balay {
140f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
142a30f8f8cSSatish Balay 
143a30f8f8cSSatish Balay   PetscFunctionBegin;
144a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
145a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
146a30f8f8cSSatish Balay   PetscFunctionReturn(0);
147a30f8f8cSSatish Balay }
148a30f8f8cSSatish Balay 
149d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
150a30f8f8cSSatish Balay   { \
151a30f8f8cSSatish Balay     brow = row/bs;  \
152a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
153a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
154a30f8f8cSSatish Balay     bcol = col/bs; \
155a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
156a30f8f8cSSatish Balay     low  = 0; high = nrow; \
157a30f8f8cSSatish Balay     while (high-low > 3) { \
158a30f8f8cSSatish Balay       t = (low+high)/2; \
159a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
160a30f8f8cSSatish Balay       else              low  = t; \
161a30f8f8cSSatish Balay     } \
162a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
163a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
164a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
165a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
166a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
167a30f8f8cSSatish Balay         else                    *bap  = value;  \
168a30f8f8cSSatish Balay         goto a_noinsert; \
169a30f8f8cSSatish Balay       } \
170a30f8f8cSSatish Balay     } \
171a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
172d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
173fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
174a30f8f8cSSatish Balay     N = nrow++ - 1;  \
175a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
176580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
177580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
178580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
179a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
180a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
181e56f5c9eSBarry Smith     A->nonzerostate++;\
182a30f8f8cSSatish Balay a_noinsert:; \
183a30f8f8cSSatish Balay     ailen[brow] = nrow; \
184a30f8f8cSSatish Balay   }
185e5e170daSBarry Smith 
186d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
187a30f8f8cSSatish Balay   { \
188a30f8f8cSSatish Balay     brow = row/bs;  \
189a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
190a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
191a30f8f8cSSatish Balay     bcol = col/bs; \
192a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
193a30f8f8cSSatish Balay     low  = 0; high = nrow; \
194a30f8f8cSSatish Balay     while (high-low > 3) { \
195a30f8f8cSSatish Balay       t = (low+high)/2; \
196a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
197a30f8f8cSSatish Balay       else              low  = t; \
198a30f8f8cSSatish Balay     } \
199a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
200a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
201a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
202a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
203a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
204a30f8f8cSSatish Balay         else                    *bap  = value;  \
205a30f8f8cSSatish Balay         goto b_noinsert; \
206a30f8f8cSSatish Balay       } \
207a30f8f8cSSatish Balay     } \
208a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
209d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
210fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
211a30f8f8cSSatish Balay     N = nrow++ - 1;  \
212a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
213580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
214580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
215580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \
216a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
217a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
218e56f5c9eSBarry Smith     B->nonzerostate++;\
219a30f8f8cSSatish Balay b_noinsert:; \
220a30f8f8cSSatish Balay     bilen[brow] = nrow; \
221a30f8f8cSSatish Balay   }
222a30f8f8cSSatish Balay 
223a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
224476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
225a30f8f8cSSatish Balay */
226dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
227a30f8f8cSSatish Balay {
228a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
229a30f8f8cSSatish Balay   MatScalar      value;
230ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
231dfbe8321SBarry Smith   PetscErrorCode ierr;
2321302d50aSBarry Smith   PetscInt       i,j,row,col;
233d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
234d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
235d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
236a30f8f8cSSatish Balay 
237a30f8f8cSSatish Balay   /* Some Variables required in the macro */
238a30f8f8cSSatish Balay   Mat          A     = baij->A;
239a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2401302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
241a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
242a30f8f8cSSatish Balay 
243a30f8f8cSSatish Balay   Mat         B     = baij->B;
244a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2451302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
246a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
247a30f8f8cSSatish Balay 
2481302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2491302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
250a30f8f8cSSatish Balay   MatScalar *ap,*bap;
251a30f8f8cSSatish Balay 
252a30f8f8cSSatish Balay   /* for stash */
2530298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2540298fd71SBarry Smith   MatScalar *v_loc = NULL;
255a30f8f8cSSatish Balay 
256a30f8f8cSSatish Balay   PetscFunctionBegin;
257a30f8f8cSSatish Balay   if (!baij->donotstash) {
25859ffdab8SBarry Smith     if (n > baij->n_loc) {
25959ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
26059ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
261785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
262785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
26326fbe8dcSKarl Rupp 
26459ffdab8SBarry Smith       baij->n_loc = n;
26559ffdab8SBarry Smith     }
26659ffdab8SBarry Smith     in_loc = baij->in_loc;
26759ffdab8SBarry Smith     v_loc  = baij->v_loc;
268a30f8f8cSSatish Balay   }
269a30f8f8cSSatish Balay 
270a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
271a30f8f8cSSatish Balay     if (im[i] < 0) continue;
272c1758adbSBarry Smith     if (PetscUnlikely(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
273a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
274a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
275a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
27601b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
27701b2bd88SHong Zhang           if (a->ignore_ltriangular) {
27801b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
27926fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
28001b2bd88SHong Zhang         }
281a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
282a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
283a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
284a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
285db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
286db4deed7SKarl Rupp           else             value = v[i+j*m];
287d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
288a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
289a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
290c1758adbSBarry Smith         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
291a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
292a30f8f8cSSatish Balay           if (mat->was_assembled) {
293a30f8f8cSSatish Balay             if (!baij->colmap) {
294ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
295a30f8f8cSSatish Balay             }
296a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
297a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
29871730473SSatish Balay             col  = col - 1;
299a30f8f8cSSatish Balay #else
30071730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
301a30f8f8cSSatish Balay #endif
302a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
303ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
304a30f8f8cSSatish Balay               col  =  in[j];
305a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
306a30f8f8cSSatish Balay               B    = baij->B;
307a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
308a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
309a30f8f8cSSatish Balay               ba   = b->a;
31071730473SSatish Balay             } else col += in[j]%bs;
311a30f8f8cSSatish Balay           } else col = in[j];
312db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
313db4deed7SKarl Rupp           else             value = v[i+j*m];
314d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
315a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
316a30f8f8cSSatish Balay         }
317a30f8f8cSSatish Balay       }
318a30f8f8cSSatish Balay     } else {  /* off processor entry */
3194cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
320a30f8f8cSSatish Balay       if (!baij->donotstash) {
3215080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
322a30f8f8cSSatish Balay         n_loc          = 0;
323a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
324f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
325a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
326a30f8f8cSSatish Balay           if (roworiented) {
327a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
328a30f8f8cSSatish Balay           } else {
329a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
330a30f8f8cSSatish Balay           }
331a30f8f8cSSatish Balay           n_loc++;
332a30f8f8cSSatish Balay         }
333b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
334a30f8f8cSSatish Balay       }
335a30f8f8cSSatish Balay     }
336a30f8f8cSSatish Balay   }
337a30f8f8cSSatish Balay   PetscFunctionReturn(0);
338a30f8f8cSSatish Balay }
339a30f8f8cSSatish Balay 
34036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34136bd2089SBarry Smith {
34236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
34336bd2089SBarry Smith   PetscErrorCode    ierr;
34436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
34636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
34836bd2089SBarry Smith   const PetscScalar *value     = v;
34936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35036bd2089SBarry Smith 
35136bd2089SBarry Smith   PetscFunctionBegin;
35236bd2089SBarry Smith   if (col < row) {
35336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
35436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
35536bd2089SBarry Smith   }
35636bd2089SBarry Smith   rp   = aj + ai[row];
35736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35836bd2089SBarry Smith   rmax = imax[row];
35936bd2089SBarry Smith   nrow = ailen[row];
36036bd2089SBarry Smith   value = v;
36136bd2089SBarry Smith   low   = 0;
36236bd2089SBarry Smith   high  = nrow;
36336bd2089SBarry Smith 
36436bd2089SBarry Smith   while (high-low > 7) {
36536bd2089SBarry Smith     t = (low+high)/2;
36636bd2089SBarry Smith     if (rp[t] > col) high = t;
36736bd2089SBarry Smith     else             low  = t;
36836bd2089SBarry Smith   }
36936bd2089SBarry Smith   for (i=low; i<high; i++) {
37036bd2089SBarry Smith     if (rp[i] > col) break;
37136bd2089SBarry Smith     if (rp[i] == col) {
37236bd2089SBarry Smith       bap = ap +  bs2*i;
37336bd2089SBarry Smith       if (roworiented) {
37436bd2089SBarry Smith         if (is == ADD_VALUES) {
37536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37736bd2089SBarry Smith               bap[jj] += *value++;
37836bd2089SBarry Smith             }
37936bd2089SBarry Smith           }
38036bd2089SBarry Smith         } else {
38136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
38236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38336bd2089SBarry Smith               bap[jj] = *value++;
38436bd2089SBarry Smith             }
38536bd2089SBarry Smith           }
38636bd2089SBarry Smith         }
38736bd2089SBarry Smith       } else {
38836bd2089SBarry Smith         if (is == ADD_VALUES) {
38936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39136bd2089SBarry Smith               *bap++ += *value++;
39236bd2089SBarry Smith             }
39336bd2089SBarry Smith           }
39436bd2089SBarry Smith         } else {
39536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39736bd2089SBarry Smith               *bap++  = *value++;
39836bd2089SBarry Smith             }
39936bd2089SBarry Smith           }
40036bd2089SBarry Smith         }
40136bd2089SBarry Smith       }
40236bd2089SBarry Smith       goto noinsert2;
40336bd2089SBarry Smith     }
40436bd2089SBarry Smith   }
40536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
40636bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
40736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40836bd2089SBarry Smith   N = nrow++ - 1; high++;
40936bd2089SBarry Smith   /* shift up all the later entries in this row */
410580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
411580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
41236bd2089SBarry Smith   rp[i] = col;
41336bd2089SBarry Smith   bap   = ap +  bs2*i;
41436bd2089SBarry Smith   if (roworiented) {
41536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41636bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
41736bd2089SBarry Smith         bap[jj] = *value++;
41836bd2089SBarry Smith       }
41936bd2089SBarry Smith     }
42036bd2089SBarry Smith   } else {
42136bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42236bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42336bd2089SBarry Smith         *bap++ = *value++;
42436bd2089SBarry Smith       }
42536bd2089SBarry Smith     }
42636bd2089SBarry Smith   }
42736bd2089SBarry Smith   noinsert2:;
42836bd2089SBarry Smith   ailen[row] = nrow;
42936bd2089SBarry Smith   PetscFunctionReturn(0);
43036bd2089SBarry Smith }
43136bd2089SBarry Smith 
43236bd2089SBarry Smith /*
43336bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
43436bd2089SBarry Smith */
43536bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
43636bd2089SBarry Smith {
43736bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
43836bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
43936bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
44036bd2089SBarry Smith   PetscErrorCode    ierr;
44136bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
44236bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
44336bd2089SBarry Smith   const PetscScalar *value     = v;
44436bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
44536bd2089SBarry Smith 
44636bd2089SBarry Smith   PetscFunctionBegin;
44736bd2089SBarry Smith   rp   = aj + ai[row];
44836bd2089SBarry Smith   ap   = aa + bs2*ai[row];
44936bd2089SBarry Smith   rmax = imax[row];
45036bd2089SBarry Smith   nrow = ailen[row];
45136bd2089SBarry Smith   low  = 0;
45236bd2089SBarry Smith   high = nrow;
45336bd2089SBarry Smith   value = v;
45436bd2089SBarry Smith   while (high-low > 7) {
45536bd2089SBarry Smith     t = (low+high)/2;
45636bd2089SBarry Smith     if (rp[t] > col) high = t;
45736bd2089SBarry Smith     else             low  = t;
45836bd2089SBarry Smith   }
45936bd2089SBarry Smith   for (i=low; i<high; i++) {
46036bd2089SBarry Smith     if (rp[i] > col) break;
46136bd2089SBarry Smith     if (rp[i] == col) {
46236bd2089SBarry Smith       bap = ap +  bs2*i;
46336bd2089SBarry Smith       if (roworiented) {
46436bd2089SBarry Smith         if (is == ADD_VALUES) {
46536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
46636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46736bd2089SBarry Smith               bap[jj] += *value++;
46836bd2089SBarry Smith             }
46936bd2089SBarry Smith           }
47036bd2089SBarry Smith         } else {
47136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
47236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
47336bd2089SBarry Smith               bap[jj] = *value++;
47436bd2089SBarry Smith             }
47536bd2089SBarry Smith           }
47636bd2089SBarry Smith         }
47736bd2089SBarry Smith       } else {
47836bd2089SBarry Smith         if (is == ADD_VALUES) {
47936bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48136bd2089SBarry Smith               bap[jj] += value[jj];
48236bd2089SBarry Smith             }
48336bd2089SBarry Smith             bap += bs;
48436bd2089SBarry Smith           }
48536bd2089SBarry Smith         } else {
48636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48836bd2089SBarry Smith               bap[jj]  = value[jj];
48936bd2089SBarry Smith             }
49036bd2089SBarry Smith             bap += bs;
49136bd2089SBarry Smith           }
49236bd2089SBarry Smith         }
49336bd2089SBarry Smith       }
49436bd2089SBarry Smith       goto noinsert2;
49536bd2089SBarry Smith     }
49636bd2089SBarry Smith   }
49736bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
49836bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
49936bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
50036bd2089SBarry Smith   N = nrow++ - 1; high++;
50136bd2089SBarry Smith   /* shift up all the later entries in this row */
502580bdb30SBarry Smith   ierr  = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
503580bdb30SBarry Smith   ierr  = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
50436bd2089SBarry Smith   rp[i] = col;
50536bd2089SBarry Smith   bap   = ap +  bs2*i;
50636bd2089SBarry Smith   if (roworiented) {
50736bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50836bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
50936bd2089SBarry Smith         bap[jj] = *value++;
51036bd2089SBarry Smith       }
51136bd2089SBarry Smith     }
51236bd2089SBarry Smith   } else {
51336bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
51436bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
51536bd2089SBarry Smith         *bap++ = *value++;
51636bd2089SBarry Smith       }
51736bd2089SBarry Smith     }
51836bd2089SBarry Smith   }
51936bd2089SBarry Smith   noinsert2:;
52036bd2089SBarry Smith   ailen[row] = nrow;
52136bd2089SBarry Smith   PetscFunctionReturn(0);
52236bd2089SBarry Smith }
52336bd2089SBarry Smith 
52436bd2089SBarry Smith /*
52536bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
52636bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
52736bd2089SBarry Smith */
528dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
529a30f8f8cSSatish Balay {
5300880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
531f15d580aSBarry Smith   const MatScalar *value;
532f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
533ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
534dfbe8321SBarry Smith   PetscErrorCode  ierr;
535899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
536476417e5SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
537476417e5SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5380880e062SHong Zhang 
539a30f8f8cSSatish Balay   PetscFunctionBegin;
5400880e062SHong Zhang   if (!barray) {
541785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
5420880e062SHong Zhang     baij->barray = barray;
5430880e062SHong Zhang   }
5440880e062SHong Zhang 
5450880e062SHong Zhang   if (roworiented) {
5460880e062SHong Zhang     stepval = (n-1)*bs;
5470880e062SHong Zhang   } else {
5480880e062SHong Zhang     stepval = (m-1)*bs;
5490880e062SHong Zhang   }
5500880e062SHong Zhang   for (i=0; i<m; i++) {
5510880e062SHong Zhang     if (im[i] < 0) continue;
552cf9c20a2SJed Brown     if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
5530880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5540880e062SHong Zhang       row = im[i] - rstart;
5550880e062SHong Zhang       for (j=0; j<n; j++) {
556f3f98c53SJed Brown         if (im[i] > in[j]) {
557f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
558e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
559f3f98c53SJed Brown         }
5600880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5610880e062SHong Zhang         if ((roworiented) && (n == 1)) {
562f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5630880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
564f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5650880e062SHong Zhang         } else { /* Here a copy is required */
5660880e062SHong Zhang           if (roworiented) {
5670880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5680880e062SHong Zhang           } else {
5690880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5700880e062SHong Zhang           }
5710880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5720880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5730880e062SHong Zhang               *barray++ = *value++;
5740880e062SHong Zhang             }
5750880e062SHong Zhang           }
5760880e062SHong Zhang           barray -=bs2;
5770880e062SHong Zhang         }
5780880e062SHong Zhang 
5790880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5800880e062SHong Zhang           col  = in[j] - cstart;
58136bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
58226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
583cf9c20a2SJed Brown         else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5840880e062SHong Zhang         else {
5850880e062SHong Zhang           if (mat->was_assembled) {
5860880e062SHong Zhang             if (!baij->colmap) {
587ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5880880e062SHong Zhang             }
5890880e062SHong Zhang 
5902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5910880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5921302d50aSBarry Smith             { PetscInt data;
5930880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
594e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5950880e062SHong Zhang             }
5960880e062SHong Zhang #else
597e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5980880e062SHong Zhang #endif
5990880e062SHong Zhang #endif
6000880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
6010880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
6020880e062SHong Zhang             col  = (col - 1)/bs;
6030880e062SHong Zhang #else
6040880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
6050880e062SHong Zhang #endif
6060880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
607ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
6080880e062SHong Zhang               col  = in[j];
6090880e062SHong Zhang             }
61026fbe8dcSKarl Rupp           } else col = in[j];
61136bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
6120880e062SHong Zhang         }
6130880e062SHong Zhang       }
6140880e062SHong Zhang     } else {
615bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6160880e062SHong Zhang       if (!baij->donotstash) {
6170880e062SHong Zhang         if (roworiented) {
6180880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6190880e062SHong Zhang         } else {
6200880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6210880e062SHong Zhang         }
6220880e062SHong Zhang       }
6230880e062SHong Zhang     }
6240880e062SHong Zhang   }
6250880e062SHong Zhang   PetscFunctionReturn(0);
626a30f8f8cSSatish Balay }
627a30f8f8cSSatish Balay 
6281302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
629a30f8f8cSSatish Balay {
630f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
6316849ba73SBarry Smith   PetscErrorCode ierr;
632d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
633d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
634a30f8f8cSSatish Balay 
635a30f8f8cSSatish Balay   PetscFunctionBegin;
636a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
637e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
638e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
639a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
640a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
641a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
642e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
643e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
644a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
645a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
646c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
647a30f8f8cSSatish Balay         } else {
648a30f8f8cSSatish Balay           if (!baij->colmap) {
649ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
650a30f8f8cSSatish Balay           }
651a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
652a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
653a30f8f8cSSatish Balay           data--;
654a30f8f8cSSatish Balay #else
655a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
656a30f8f8cSSatish Balay #endif
657a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
658a30f8f8cSSatish Balay           else {
659a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
660e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
661a30f8f8cSSatish Balay           }
662a30f8f8cSSatish Balay         }
663a30f8f8cSSatish Balay       }
664f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
665a30f8f8cSSatish Balay   }
666a30f8f8cSSatish Balay   PetscFunctionReturn(0);
667a30f8f8cSSatish Balay }
668a30f8f8cSSatish Balay 
669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
670a30f8f8cSSatish Balay {
671a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
672dfbe8321SBarry Smith   PetscErrorCode ierr;
673a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
674a30f8f8cSSatish Balay 
675a30f8f8cSSatish Balay   PetscFunctionBegin;
676a30f8f8cSSatish Balay   if (baij->size == 1) {
677a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
678a30f8f8cSSatish Balay   } else {
679a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
680785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
681a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
682a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
683a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
684a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
685b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6868f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
687a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6880b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6890b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6900b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6910b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
692899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
693d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6940b8dc8d2SHong Zhang       MatScalar    *v;
6950b8dc8d2SHong Zhang 
696dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
697580bdb30SBarry Smith       ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr);
6980b8dc8d2SHong Zhang       /* Amat */
6990b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
7000b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7010b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7020b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
7030b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7040b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
7050b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7060b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7070b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7080b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7090b8dc8d2SHong Zhang               /* non-diagonal block */
7100b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
7110b8dc8d2SHong Zhang             }
7120b8dc8d2SHong Zhang           }
7130b8dc8d2SHong Zhang         }
71451f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7150b8dc8d2SHong Zhang       }
7160b8dc8d2SHong Zhang       /* Bmat */
7170b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7180b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7190b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7200b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7210b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7220b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7230b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7240b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7250b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7260b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7270b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7280b8dc8d2SHong Zhang             }
7290b8dc8d2SHong Zhang           }
7300b8dc8d2SHong Zhang         }
73151f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7320b8dc8d2SHong Zhang       }
733b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7340b8dc8d2SHong Zhang       *norm = 0.0;
735d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7360b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7370b8dc8d2SHong Zhang       }
73874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
739f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
740a30f8f8cSSatish Balay   }
741a30f8f8cSSatish Balay   PetscFunctionReturn(0);
742a30f8f8cSSatish Balay }
743a30f8f8cSSatish Balay 
744dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
745a30f8f8cSSatish Balay {
746a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
747dfbe8321SBarry Smith   PetscErrorCode ierr;
7481302d50aSBarry Smith   PetscInt       nstash,reallocs;
749a30f8f8cSSatish Balay 
750a30f8f8cSSatish Balay   PetscFunctionBegin;
75126fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
752a30f8f8cSSatish Balay 
753d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
7541e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7561e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7581e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
759a30f8f8cSSatish Balay   PetscFunctionReturn(0);
760a30f8f8cSSatish Balay }
761a30f8f8cSSatish Balay 
762dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
763a30f8f8cSSatish Balay {
764a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
765a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
7666849ba73SBarry Smith   PetscErrorCode ierr;
76713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
768e44c0bd4SBarry Smith   PetscInt       *row,*col;
769ace3abfcSBarry Smith   PetscBool      other_disassembled;
77013f74950SBarry Smith   PetscMPIInt    n;
771ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
772a30f8f8cSSatish Balay   MatScalar      *val;
773a30f8f8cSSatish Balay 
77491c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
775a30f8f8cSSatish Balay   PetscFunctionBegin;
7764cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
777a30f8f8cSSatish Balay     while (1) {
778a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
779a30f8f8cSSatish Balay       if (!flg) break;
780a30f8f8cSSatish Balay 
781a30f8f8cSSatish Balay       for (i=0; i<n;) {
782a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
78326fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
78426fbe8dcSKarl Rupp           if (row[j] != rstart) break;
78526fbe8dcSKarl Rupp         }
786a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
787a30f8f8cSSatish Balay         else       ncols = n-i;
788a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7894b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
790a30f8f8cSSatish Balay         i    = j;
791a30f8f8cSSatish Balay       }
792a30f8f8cSSatish Balay     }
793a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
794a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
795a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
796a30f8f8cSSatish Balay        restore the original flags */
797a30f8f8cSSatish Balay     r1 = baij->roworiented;
798a30f8f8cSSatish Balay     r2 = a->roworiented;
79991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
80026fbe8dcSKarl Rupp 
801a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
802a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
80326fbe8dcSKarl Rupp 
80491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
805a30f8f8cSSatish Balay     while (1) {
806a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
807a30f8f8cSSatish Balay       if (!flg) break;
808a30f8f8cSSatish Balay 
809a30f8f8cSSatish Balay       for (i=0; i<n;) {
810a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
81126fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
81226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
81326fbe8dcSKarl Rupp         }
814a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
815a30f8f8cSSatish Balay         else       ncols = n-i;
8164b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
817a30f8f8cSSatish Balay         i    = j;
818a30f8f8cSSatish Balay       }
819a30f8f8cSSatish Balay     }
820a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
82126fbe8dcSKarl Rupp 
822a30f8f8cSSatish Balay     baij->roworiented = r1;
823a30f8f8cSSatish Balay     a->roworiented    = r2;
82426fbe8dcSKarl Rupp 
82591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
826a30f8f8cSSatish Balay   }
827a30f8f8cSSatish Balay 
828a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
829a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
832a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
833a30f8f8cSSatish Balay   /*
834a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
835a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
836a30f8f8cSSatish Balay   */
837a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
838b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
839a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
840ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
841a30f8f8cSSatish Balay     }
842a30f8f8cSSatish Balay   }
843a30f8f8cSSatish Balay 
844a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
84540781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
846a30f8f8cSSatish Balay   }
847a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
848a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
849a30f8f8cSSatish Balay 
85074ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
85126fbe8dcSKarl Rupp 
852f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8534f9cfa9eSBarry Smith 
8544f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8554f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
856e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
857b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
858e56f5c9eSBarry Smith   }
859a30f8f8cSSatish Balay   PetscFunctionReturn(0);
860a30f8f8cSSatish Balay }
861a30f8f8cSSatish Balay 
862dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8639804daf3SBarry Smith #include <petscdraw.h>
8646849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
865a30f8f8cSSatish Balay {
866a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
867dfbe8321SBarry Smith   PetscErrorCode    ierr;
868d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8697da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
870ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
871b0a32e0cSBarry Smith   PetscViewer       sviewer;
872f3ef73ceSBarry Smith   PetscViewerFormat format;
873a30f8f8cSSatish Balay 
874a30f8f8cSSatish Balay   PetscFunctionBegin;
875251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
876251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
87732077d6dSBarry Smith   if (iascii) {
878b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
879456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
880a30f8f8cSSatish Balay       MatInfo info;
881ffc4695bSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr);
882a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8831575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
884b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
885a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
886e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
887a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
888e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
889b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8901575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
89107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
892a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
893a30f8f8cSSatish Balay       PetscFunctionReturn(0);
894fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
89577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
896a30f8f8cSSatish Balay       PetscFunctionReturn(0);
897c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
898c1490034SHong Zhang       PetscFunctionReturn(0);
899a30f8f8cSSatish Balay     }
900a30f8f8cSSatish Balay   }
901a30f8f8cSSatish Balay 
902a30f8f8cSSatish Balay   if (isdraw) {
903b0a32e0cSBarry Smith     PetscDraw draw;
904ace3abfcSBarry Smith     PetscBool isnull;
905b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
90645f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
90745f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
908a30f8f8cSSatish Balay   }
909a30f8f8cSSatish Balay 
9107da1fb6eSBarry Smith   {
911a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
912a30f8f8cSSatish Balay     Mat          A;
91365d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
91465d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
915d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
916a30f8f8cSSatish Balay     MatScalar    *a;
9173e219373SBarry Smith     const char   *matname;
918a30f8f8cSSatish Balay 
919f204ca49SKris Buschelman     /* Should this be the same type as mat? */
920ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
921a30f8f8cSSatish Balay     if (!rank) {
922f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
923a30f8f8cSSatish Balay     } else {
924f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
925a30f8f8cSSatish Balay     }
926f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
9270298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
9282b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
9293bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
930a30f8f8cSSatish Balay 
931a30f8f8cSSatish Balay     /* copy over the A part */
93265d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
933a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
934785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
935a30f8f8cSSatish Balay 
936a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
937e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
93826fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
939a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
940e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
941a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
942dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
94326fbe8dcSKarl Rupp           col++;
94426fbe8dcSKarl Rupp           a += bs;
945a30f8f8cSSatish Balay         }
946a30f8f8cSSatish Balay       }
947a30f8f8cSSatish Balay     }
948a30f8f8cSSatish Balay     /* copy over the B part */
94965d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
95065d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
951a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
952e9f7bc9eSHong Zhang 
953e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
95426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
955a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
956a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
957a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
958799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
95926fbe8dcSKarl Rupp           col++;
96026fbe8dcSKarl Rupp           a += bs;
961a30f8f8cSSatish Balay         }
962a30f8f8cSSatish Balay       }
963a30f8f8cSSatish Balay     }
964a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
965a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
966a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
967a30f8f8cSSatish Balay     /*
968a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
969b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
970a30f8f8cSSatish Balay     */
9713f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
972ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9733e219373SBarry Smith     if (!rank) {
974ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
975383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
976a30f8f8cSSatish Balay     }
9773f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9781575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9796bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
980a30f8f8cSSatish Balay   }
981a30f8f8cSSatish Balay   PetscFunctionReturn(0);
982a30f8f8cSSatish Balay }
983a30f8f8cSSatish Balay 
984618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
985618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
986d1654148SHong Zhang 
987dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
988a30f8f8cSSatish Balay {
989dfbe8321SBarry Smith   PetscErrorCode ierr;
990ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
991a30f8f8cSSatish Balay 
992a30f8f8cSSatish Balay   PetscFunctionBegin;
993251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
994251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
995251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
996251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
997d1654148SHong Zhang   if (iascii || isdraw || issocket) {
998a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
999d1654148SHong Zhang   } else if (isbinary) {
1000d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1001a30f8f8cSSatish Balay   }
1002a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1003a30f8f8cSSatish Balay }
1004a30f8f8cSSatish Balay 
1005dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1006a30f8f8cSSatish Balay {
1007a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1008dfbe8321SBarry Smith   PetscErrorCode ierr;
1009a30f8f8cSSatish Balay 
1010a30f8f8cSSatish Balay   PetscFunctionBegin;
1011a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1012d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
1013a30f8f8cSSatish Balay #endif
1014a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1015a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
10166bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
10176bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1018a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
10196bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1020a30f8f8cSSatish Balay #else
102105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1022a30f8f8cSSatish Balay #endif
102305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
10246bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
10256bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
10266bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
10276bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
10286bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
10296bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
10306bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
10316bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
10325755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
103305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
103405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
10356bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
10366bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
10376bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1038ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
103905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1040a30f8f8cSSatish Balay #endif
104159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
104259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1043899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1044bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1045901853e0SKris Buschelman 
1046f4259b30SLisandro Dalcin   ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr);
1047bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1048bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1049bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1050d2c30c80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
10516214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
10526214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
10536214f412SHong Zhang #endif
1054d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
1055d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL);CHKERRQ(ierr);
1056d24d4204SJose E. Roman #endif
1057b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr);
1058b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr);
1059a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1060a30f8f8cSSatish Balay }
1061a30f8f8cSSatish Balay 
1062547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1063547795f9SHong Zhang {
1064547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1065547795f9SHong Zhang   PetscErrorCode    ierr;
1066eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
10676de40e93SBarry Smith   PetscScalar       *from;
10686de40e93SBarry Smith   const PetscScalar *x;
1069547795f9SHong Zhang 
1070547795f9SHong Zhang   PetscFunctionBegin;
1071547795f9SHong Zhang   /* diagonal part */
1072547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1073547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1074547795f9SHong Zhang 
1075547795f9SHong Zhang   /* subdiagonal part */
1076a3234186SStefano Zampini   if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name);
1077547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1078547795f9SHong Zhang 
1079547795f9SHong Zhang   /* copy x into the vec slvec0 */
1080547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10816de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1082547795f9SHong Zhang 
1083580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1084547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
10856de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1086547795f9SHong Zhang 
1087547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1088547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1089547795f9SHong Zhang   /* supperdiagonal part */
1090547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1091547795f9SHong Zhang   PetscFunctionReturn(0);
1092547795f9SHong Zhang }
1093547795f9SHong Zhang 
1094dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1095a9d4b620SHong Zhang {
1096a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1097dfbe8321SBarry Smith   PetscErrorCode    ierr;
1098eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1099d9ca1df4SBarry Smith   PetscScalar       *from;
1100d9ca1df4SBarry Smith   const PetscScalar *x;
1101a9d4b620SHong Zhang 
1102a9d4b620SHong Zhang   PetscFunctionBegin;
1103a9d4b620SHong Zhang   /* diagonal part */
1104a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1105fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1106a9d4b620SHong Zhang 
1107a9d4b620SHong Zhang   /* subdiagonal part */
1108a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1109fc165ae2SBarry Smith 
1110a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11111ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1112d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1113a9d4b620SHong Zhang 
1114580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1115fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1116d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1117fc165ae2SBarry Smith 
1118fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1119ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1120a9d4b620SHong Zhang   /* supperdiagonal part */
1121a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1122a9d4b620SHong Zhang   PetscFunctionReturn(0);
1123a9d4b620SHong Zhang }
1124a9d4b620SHong Zhang 
1125eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz)
1126eb1ec7c1SStefano Zampini {
1127eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1128eb1ec7c1SStefano Zampini   PetscErrorCode    ierr;
1129eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1130eb1ec7c1SStefano Zampini   PetscScalar       *from,zero=0.0;
1131eb1ec7c1SStefano Zampini   const PetscScalar *x;
1132eb1ec7c1SStefano Zampini 
1133eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1134eb1ec7c1SStefano Zampini   /* diagonal part */
1135eb1ec7c1SStefano Zampini   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1136eb1ec7c1SStefano Zampini   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1137eb1ec7c1SStefano Zampini 
1138eb1ec7c1SStefano Zampini   /* subdiagonal part */
1139a3234186SStefano Zampini   if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name);
1140eb1ec7c1SStefano Zampini   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1141eb1ec7c1SStefano Zampini 
1142eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
1143eb1ec7c1SStefano Zampini   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1144eb1ec7c1SStefano Zampini   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1145eb1ec7c1SStefano Zampini   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1146eb1ec7c1SStefano Zampini   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1147eb1ec7c1SStefano Zampini 
1148eb1ec7c1SStefano Zampini   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1149eb1ec7c1SStefano Zampini   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1150eb1ec7c1SStefano Zampini   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1151eb1ec7c1SStefano Zampini 
1152eb1ec7c1SStefano Zampini   /* supperdiagonal part */
1153eb1ec7c1SStefano Zampini   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1154eb1ec7c1SStefano Zampini   PetscFunctionReturn(0);
1155eb1ec7c1SStefano Zampini }
1156eb1ec7c1SStefano Zampini 
1157dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1158a30f8f8cSSatish Balay {
1159de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1160dfbe8321SBarry Smith   PetscErrorCode    ierr;
1161d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1162d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1163d9ca1df4SBarry Smith   const PetscScalar *x;
1164a9d4b620SHong Zhang 
1165a9d4b620SHong Zhang   PetscFunctionBegin;
1166a9d4b620SHong Zhang   /* diagonal part */
1167a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
11682dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1169a9d4b620SHong Zhang 
1170a9d4b620SHong Zhang   /* subdiagonal part */
1171a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1172a9d4b620SHong Zhang 
1173a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11741ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1175d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1176580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
11771ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1178a9d4b620SHong Zhang 
1179ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1180d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1181ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1182a9d4b620SHong Zhang 
1183a9d4b620SHong Zhang   /* supperdiagonal part */
1184a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1185a9d4b620SHong Zhang   PetscFunctionReturn(0);
1186a9d4b620SHong Zhang }
1187a9d4b620SHong Zhang 
1188a30f8f8cSSatish Balay /*
1189a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1190a30f8f8cSSatish Balay    diagonal block
1191a30f8f8cSSatish Balay */
1192dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1193a30f8f8cSSatish Balay {
1194a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1195dfbe8321SBarry Smith   PetscErrorCode ierr;
1196a30f8f8cSSatish Balay 
1197a30f8f8cSSatish Balay   PetscFunctionBegin;
1198e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1199a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1200a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1201a30f8f8cSSatish Balay }
1202a30f8f8cSSatish Balay 
1203f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1204a30f8f8cSSatish Balay {
1205a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1206dfbe8321SBarry Smith   PetscErrorCode ierr;
1207a30f8f8cSSatish Balay 
1208a30f8f8cSSatish Balay   PetscFunctionBegin;
1209f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1210f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1211a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1212a30f8f8cSSatish Balay }
1213a30f8f8cSSatish Balay 
12141302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1215a30f8f8cSSatish Balay {
1216d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1217d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1218d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1219d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1220d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1221899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1222d0d4cfc2SHong Zhang 
1223a30f8f8cSSatish Balay   PetscFunctionBegin;
1224e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1225d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1226d0d4cfc2SHong Zhang 
1227d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1228d0d4cfc2SHong Zhang     /*
1229d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1230d0d4cfc2SHong Zhang     */
1231d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1232d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1233d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1234d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1235d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
123626fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1237d0d4cfc2SHong Zhang     }
1238dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1239d0d4cfc2SHong Zhang   }
1240d0d4cfc2SHong Zhang 
1241e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1242d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1243d0d4cfc2SHong Zhang 
1244d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1245f4259b30SLisandro Dalcin   if (!v)   {pvA = NULL; pvB = NULL;}
1246f4259b30SLisandro Dalcin   if (!idx) {pcA = NULL; if (!v) pcB = NULL;}
1247d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1248d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1249d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1250d0d4cfc2SHong Zhang 
1251d0d4cfc2SHong Zhang   cmap = mat->garray;
1252d0d4cfc2SHong Zhang   if (v  || idx) {
1253d0d4cfc2SHong Zhang     if (nztot) {
1254d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1255d0d4cfc2SHong Zhang       PetscInt imark = -1;
1256d0d4cfc2SHong Zhang       if (v) {
1257d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1258d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1259d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1260d0d4cfc2SHong Zhang           else break;
1261d0d4cfc2SHong Zhang         }
1262d0d4cfc2SHong Zhang         imark = i;
1263d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1264d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1265d0d4cfc2SHong Zhang       }
1266d0d4cfc2SHong Zhang       if (idx) {
1267d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1268d0d4cfc2SHong Zhang         if (imark > -1) {
1269d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1270d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1271d0d4cfc2SHong Zhang           }
1272d0d4cfc2SHong Zhang         } else {
1273d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
127426fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1275d0d4cfc2SHong Zhang             else break;
1276d0d4cfc2SHong Zhang           }
1277d0d4cfc2SHong Zhang           imark = i;
1278d0d4cfc2SHong Zhang         }
1279d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1280d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1281d0d4cfc2SHong Zhang       }
1282d0d4cfc2SHong Zhang     } else {
1283f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1284f4259b30SLisandro Dalcin       if (v)   *v   = NULL;
1285d0d4cfc2SHong Zhang     }
1286d0d4cfc2SHong Zhang   }
1287d0d4cfc2SHong Zhang   *nz  = nztot;
1288d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1289d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1290a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1291a30f8f8cSSatish Balay }
1292a30f8f8cSSatish Balay 
12931302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1294a30f8f8cSSatish Balay {
1295a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1296a30f8f8cSSatish Balay 
1297a30f8f8cSSatish Balay   PetscFunctionBegin;
1298e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1299a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1300a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1301a30f8f8cSSatish Balay }
1302a30f8f8cSSatish Balay 
1303d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1304d0d4cfc2SHong Zhang {
1305d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1306d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1307d0d4cfc2SHong Zhang 
1308d0d4cfc2SHong Zhang   PetscFunctionBegin;
1309d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1310d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1311d0d4cfc2SHong Zhang }
1312d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1313d0d4cfc2SHong Zhang {
1314d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1315d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1316d0d4cfc2SHong Zhang 
1317d0d4cfc2SHong Zhang   PetscFunctionBegin;
1318d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1319d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1320d0d4cfc2SHong Zhang }
1321d0d4cfc2SHong Zhang 
1322*2726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
1323*2726fb6dSPierre Jolivet {
1324*2726fb6dSPierre Jolivet #if defined(PETSC_USE_COMPLEX)
1325*2726fb6dSPierre Jolivet   PetscErrorCode ierr;
1326*2726fb6dSPierre Jolivet   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)mat->data;
1327*2726fb6dSPierre Jolivet 
1328*2726fb6dSPierre Jolivet   PetscFunctionBegin;
1329*2726fb6dSPierre Jolivet   ierr = MatConjugate(a->A);CHKERRQ(ierr);
1330*2726fb6dSPierre Jolivet   ierr = MatConjugate(a->B);CHKERRQ(ierr);
1331*2726fb6dSPierre Jolivet #else
1332*2726fb6dSPierre Jolivet   PetscFunctionBegin;
1333*2726fb6dSPierre Jolivet #endif
1334*2726fb6dSPierre Jolivet   PetscFunctionReturn(0);
1335*2726fb6dSPierre Jolivet }
1336*2726fb6dSPierre Jolivet 
133799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
133899cafbc1SBarry Smith {
133999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
134099cafbc1SBarry Smith   PetscErrorCode ierr;
134199cafbc1SBarry Smith 
134299cafbc1SBarry Smith   PetscFunctionBegin;
134399cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
134499cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
134599cafbc1SBarry Smith   PetscFunctionReturn(0);
134699cafbc1SBarry Smith }
134799cafbc1SBarry Smith 
134899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
134999cafbc1SBarry Smith {
135099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
135199cafbc1SBarry Smith   PetscErrorCode ierr;
135299cafbc1SBarry Smith 
135399cafbc1SBarry Smith   PetscFunctionBegin;
135499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
135599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
135699cafbc1SBarry Smith   PetscFunctionReturn(0);
135799cafbc1SBarry Smith }
135899cafbc1SBarry Smith 
13597dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
136036032a97SHong Zhang    Input: isrow       - distributed(parallel),
136136032a97SHong Zhang           iscol_local - locally owned (seq)
136236032a97SHong Zhang */
136336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13648f46ffcaSHong Zhang {
13658f46ffcaSHong Zhang   PetscErrorCode ierr;
13668f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13678f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
136836032a97SHong Zhang 
136936032a97SHong Zhang   PetscFunctionBegin;
13708f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
13718f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
13721098a8e8SHong Zhang   if (sz1 > sz2) {
13731098a8e8SHong Zhang     *flg = PETSC_FALSE;
13741098a8e8SHong Zhang     PetscFunctionReturn(0);
13751098a8e8SHong Zhang   }
13768f46ffcaSHong Zhang 
13778f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
13788f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13798f46ffcaSHong Zhang 
13808f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
13818f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
1382580bdb30SBarry Smith   ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr);
1383580bdb30SBarry Smith   ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr);
13848f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
13858f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
13868f46ffcaSHong Zhang 
13878f46ffcaSHong Zhang   nmatch=0;
13888f46ffcaSHong Zhang   k     = 0;
13898f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
13908f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
13918f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13928f46ffcaSHong Zhang         k = j; nmatch++;
13938f46ffcaSHong Zhang         break;
13948f46ffcaSHong Zhang       }
13958f46ffcaSHong Zhang     }
13968f46ffcaSHong Zhang   }
13978f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
13988f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13998f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
14008f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
14011098a8e8SHong Zhang   if (nmatch < sz1) {
14021098a8e8SHong Zhang     *flg = PETSC_FALSE;
14031098a8e8SHong Zhang   } else {
14041098a8e8SHong Zhang     *flg = PETSC_TRUE;
14051098a8e8SHong Zhang   }
140636032a97SHong Zhang   PetscFunctionReturn(0);
14078f46ffcaSHong Zhang }
140836032a97SHong Zhang 
14097dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
141036032a97SHong Zhang {
141136032a97SHong Zhang   PetscErrorCode ierr;
141236032a97SHong Zhang   IS             iscol_local;
141336032a97SHong Zhang   PetscInt       csize;
141436032a97SHong Zhang   PetscBool      isequal;
141536032a97SHong Zhang 
141636032a97SHong Zhang   PetscFunctionBegin;
141736032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
141836032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
141936032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
142036032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
142136032a97SHong Zhang   } else {
142236032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
142336032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
142436032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
14258f46ffcaSHong Zhang   }
14268f46ffcaSHong Zhang 
14277dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
14287dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
14298f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
14308f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
14318f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
14328f46ffcaSHong Zhang   }
14338f46ffcaSHong Zhang   PetscFunctionReturn(0);
14348f46ffcaSHong Zhang }
14358f46ffcaSHong Zhang 
1436dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1437a30f8f8cSSatish Balay {
1438a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1439dfbe8321SBarry Smith   PetscErrorCode ierr;
1440a30f8f8cSSatish Balay 
1441a30f8f8cSSatish Balay   PetscFunctionBegin;
1442a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1443a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1444a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1445a30f8f8cSSatish Balay }
1446a30f8f8cSSatish Balay 
1447dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1448a30f8f8cSSatish Balay {
1449a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1450a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1451dfbe8321SBarry Smith   PetscErrorCode ierr;
14523966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
1453a30f8f8cSSatish Balay 
1454a30f8f8cSSatish Balay   PetscFunctionBegin;
1455d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
145626fbe8dcSKarl Rupp 
1457a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
145826fbe8dcSKarl Rupp 
1459a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1460a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
146126fbe8dcSKarl Rupp 
1462a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
146326fbe8dcSKarl Rupp 
1464a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1465a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1466a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1467a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1468a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1469a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1470a30f8f8cSSatish Balay     info->memory       = isend[3];
1471a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1472a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14733966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
147426fbe8dcSKarl Rupp 
1475a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1476a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1477a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1478a30f8f8cSSatish Balay     info->memory       = irecv[3];
1479a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1480a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14813966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
148226fbe8dcSKarl Rupp 
1483a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1484a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1485a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1486a30f8f8cSSatish Balay     info->memory       = irecv[3];
1487a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1488f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1489a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1490a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1491a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1492a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1493a30f8f8cSSatish Balay }
1494a30f8f8cSSatish Balay 
1495ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1496a30f8f8cSSatish Balay {
1497a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1498d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1499dfbe8321SBarry Smith   PetscErrorCode ierr;
1500a30f8f8cSSatish Balay 
1501a30f8f8cSSatish Balay   PetscFunctionBegin;
1502e98b92d7SKris Buschelman   switch (op) {
1503512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1504e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
150528b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1506a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1507c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1508e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
150943674050SBarry Smith     MatCheckPreallocated(A,1);
15104e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15114e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1512e98b92d7SKris Buschelman     break;
1513e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
151443674050SBarry Smith     MatCheckPreallocated(A,1);
15154e0d8c25SBarry Smith     a->roworiented = flg;
151626fbe8dcSKarl Rupp 
15174e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15184e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1519e98b92d7SKris Buschelman     break;
15208c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1521071fcb05SBarry Smith   case MAT_SORTED_FULL:
1522290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1523e98b92d7SKris Buschelman     break;
1524e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15254e0d8c25SBarry Smith     a->donotstash = flg;
1526e98b92d7SKris Buschelman     break;
1527e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
15284e0d8c25SBarry Smith     a->ht_flag = flg;
1529e98b92d7SKris Buschelman     break;
15309a4540c5SBarry Smith   case MAT_HERMITIAN:
153143674050SBarry Smith     MatCheckPreallocated(A,1);
1532eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15330f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1534eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1535547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1536eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1537eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1538eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1539eb1ec7c1SStefano Zampini       A->symmetric = PETSC_FALSE;
1540eb1ec7c1SStefano Zampini     }
15410f2140c7SStefano Zampini #endif
1542eeffb40dSHong Zhang     break;
1543ffa07934SHong Zhang   case MAT_SPD:
154477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
154543674050SBarry Smith     MatCheckPreallocated(A,1);
1546eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1547eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1548eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1549eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1550eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1551eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1552eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1553eb1ec7c1SStefano Zampini     }
1554eb1ec7c1SStefano Zampini #endif
1555eeffb40dSHong Zhang     break;
155677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
155743674050SBarry Smith     MatCheckPreallocated(A,1);
1558eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1559eeffb40dSHong Zhang     break;
15609a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1561e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1562290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
156377e54ba9SKris Buschelman     break;
1564d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15654e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1566d0d4cfc2SHong Zhang     break;
1567d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15684e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1569d0d4cfc2SHong Zhang     break;
1570d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15714e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1572d0d4cfc2SHong Zhang     break;
1573e98b92d7SKris Buschelman   default:
1574e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1575a30f8f8cSSatish Balay   }
1576a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1577a30f8f8cSSatish Balay }
1578a30f8f8cSSatish Balay 
1579fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1580a30f8f8cSSatish Balay {
1581dfbe8321SBarry Smith   PetscErrorCode ierr;
15826e111a19SKarl Rupp 
1583a30f8f8cSSatish Balay   PetscFunctionBegin;
1584cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1585999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1586cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1587cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1588fc4dec0aSBarry Smith   }
15898115998fSBarry Smith   PetscFunctionReturn(0);
1590a30f8f8cSSatish Balay }
1591a30f8f8cSSatish Balay 
1592dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1593a30f8f8cSSatish Balay {
1594a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1595a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1596dfbe8321SBarry Smith   PetscErrorCode ierr;
15975e90f9d9SHong Zhang   PetscInt       nv,m,n;
1598ace3abfcSBarry Smith   PetscBool      flg;
1599a30f8f8cSSatish Balay 
1600a30f8f8cSSatish Balay   PetscFunctionBegin;
1601a30f8f8cSSatish Balay   if (ll != rr) {
1602b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1603e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1604a30f8f8cSSatish Balay   }
1605b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1606b3bf805bSHong Zhang 
16075e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1608e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1609b3bf805bSHong Zhang 
16105e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1611e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
16125e90f9d9SHong Zhang 
1613ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
16145e90f9d9SHong Zhang 
16155e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
16160298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
16175e90f9d9SHong Zhang 
16185e90f9d9SHong Zhang   /* scale the diagonal part */
1619a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1620a30f8f8cSSatish Balay 
16215e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1622ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
16230298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1624a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1625a30f8f8cSSatish Balay }
1626a30f8f8cSSatish Balay 
1627dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1628a30f8f8cSSatish Balay {
1629f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1630dfbe8321SBarry Smith   PetscErrorCode ierr;
1631a30f8f8cSSatish Balay 
1632a30f8f8cSSatish Balay   PetscFunctionBegin;
1633a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1634a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1635a30f8f8cSSatish Balay }
1636a30f8f8cSSatish Balay 
16376849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1638a30f8f8cSSatish Balay 
1639ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1640a30f8f8cSSatish Balay {
1641a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1642a30f8f8cSSatish Balay   Mat            a,b,c,d;
1643ace3abfcSBarry Smith   PetscBool      flg;
1644dfbe8321SBarry Smith   PetscErrorCode ierr;
1645a30f8f8cSSatish Balay 
1646a30f8f8cSSatish Balay   PetscFunctionBegin;
1647a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1648a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1649a30f8f8cSSatish Balay 
1650a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1651abc0a331SBarry Smith   if (flg) {
1652a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1653a30f8f8cSSatish Balay   }
1654b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1655a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1656a30f8f8cSSatish Balay }
1657a30f8f8cSSatish Balay 
16583c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16593c896bc6SHong Zhang {
16603c896bc6SHong Zhang   PetscErrorCode ierr;
16614c7a3774SStefano Zampini   PetscBool      isbaij;
16623c896bc6SHong Zhang 
16633c896bc6SHong Zhang   PetscFunctionBegin;
16644c7a3774SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr);
16654c7a3774SStefano Zampini   if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
16663c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16673c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1668d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
16693c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1670d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
16713c896bc6SHong Zhang   } else {
16724c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
16734c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
16744c7a3774SStefano Zampini 
16753c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
16763c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
16773c896bc6SHong Zhang   }
1678cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
16793c896bc6SHong Zhang   PetscFunctionReturn(0);
16803c896bc6SHong Zhang }
16813c896bc6SHong Zhang 
16824994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1683273d9f13SBarry Smith {
1684dfbe8321SBarry Smith   PetscErrorCode ierr;
1685273d9f13SBarry Smith 
1686273d9f13SBarry Smith   PetscFunctionBegin;
1687f4259b30SLisandro Dalcin   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL);CHKERRQ(ierr);
1688273d9f13SBarry Smith   PetscFunctionReturn(0);
1689273d9f13SBarry Smith }
1690a5e6ed63SBarry Smith 
16914fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16924fe895cdSHong Zhang {
16934fe895cdSHong Zhang   PetscErrorCode ierr;
16944fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16954fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16964fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
16974fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
16984fe895cdSHong Zhang 
16994fe895cdSHong Zhang   PetscFunctionBegin;
17004fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17014fe895cdSHong Zhang     PetscScalar alpha = a;
17024fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
17034fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1704c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
17058b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
17064fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
17074fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1708c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
17098b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1710a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1711ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1712ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1713ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1714ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
17154fe895cdSHong Zhang   } else {
17164de5dceeSHong Zhang     Mat      B;
17174de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
17184de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1719d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
17204de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
17214de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
17224de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
17234de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
17244de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
17254de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
17264de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
17274de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
17284de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
17294de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
17304de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
17314de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
173228be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
17334de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
17344de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1735d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
17364de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
17374fe895cdSHong Zhang   }
17384fe895cdSHong Zhang   PetscFunctionReturn(0);
17394fe895cdSHong Zhang }
17404fe895cdSHong Zhang 
17417dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1742a5e6ed63SBarry Smith {
17436849ba73SBarry Smith   PetscErrorCode ierr;
17441302d50aSBarry Smith   PetscInt       i;
1745afebec48SHong Zhang   PetscBool      flg;
1746a5e6ed63SBarry Smith 
17476849ba73SBarry Smith   PetscFunctionBegin;
17487dae84e0SHong Zhang   ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1749a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1750a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1751afebec48SHong Zhang     if (!flg) {
1752b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1753a5e6ed63SBarry Smith     }
17544dcd73b1SHong Zhang   }
1755a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1756a5e6ed63SBarry Smith }
1757a5e6ed63SBarry Smith 
17587d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17597d68702bSBarry Smith {
17607d68702bSBarry Smith   PetscErrorCode ierr;
17617d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17626f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
17637d68702bSBarry Smith 
17647d68702bSBarry Smith   PetscFunctionBegin;
17656f33a894SBarry Smith   if (!Y->preallocated) {
17667d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
17676f33a894SBarry Smith   } else if (!aij->nz) {
1768b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17696f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1770b83222d8SBarry Smith     aij->nonew = nonew;
17717d68702bSBarry Smith   }
17727d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
17737d68702bSBarry Smith   PetscFunctionReturn(0);
17747d68702bSBarry Smith }
17757d68702bSBarry Smith 
17763b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
17773b49f96aSBarry Smith {
17783b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
17793b49f96aSBarry Smith   PetscErrorCode ierr;
17803b49f96aSBarry Smith 
17813b49f96aSBarry Smith   PetscFunctionBegin;
17823b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
17833b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
17843b49f96aSBarry Smith   if (d) {
17853b49f96aSBarry Smith     PetscInt rstart;
17863b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
17873b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
17883b49f96aSBarry Smith 
17893b49f96aSBarry Smith   }
17903b49f96aSBarry Smith   PetscFunctionReturn(0);
17913b49f96aSBarry Smith }
17923b49f96aSBarry Smith 
1793a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1794a5b7ff6bSBarry Smith {
1795a5b7ff6bSBarry Smith   PetscFunctionBegin;
1796a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1797a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1798a5b7ff6bSBarry Smith }
17993b49f96aSBarry Smith 
1800a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
18013964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1802a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1803a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1804a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
180597304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1806431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1807431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1808f4259b30SLisandro Dalcin                                        NULL,
1809f4259b30SLisandro Dalcin                                        NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
1811f4259b30SLisandro Dalcin                                /* 10*/ NULL,
1812f4259b30SLisandro Dalcin                                        NULL,
1813f4259b30SLisandro Dalcin                                        NULL,
181441f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1815a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
181697304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1817a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1818a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1819a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1820a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
182197304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1822a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1823a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1824a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1825f4259b30SLisandro Dalcin                                /* 24*/ NULL,
1826f4259b30SLisandro Dalcin                                        NULL,
1827f4259b30SLisandro Dalcin                                        NULL,
1828f4259b30SLisandro Dalcin                                        NULL,
1829f4259b30SLisandro Dalcin                                        NULL,
18304994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1831f4259b30SLisandro Dalcin                                        NULL,
1832f4259b30SLisandro Dalcin                                        NULL,
1833a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1834f4259b30SLisandro Dalcin                                        NULL,
1835d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1836f4259b30SLisandro Dalcin                                        NULL,
1837f4259b30SLisandro Dalcin                                        NULL,
1838f4259b30SLisandro Dalcin                                        NULL,
1839f4259b30SLisandro Dalcin                                        NULL,
1840d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
18417dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1842d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1843a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18443c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1845f4259b30SLisandro Dalcin                                /* 44*/ NULL,
1846a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18477d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1848f4259b30SLisandro Dalcin                                        NULL,
1849f4259b30SLisandro Dalcin                                        NULL,
1850f4259b30SLisandro Dalcin                                /* 49*/ NULL,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                        NULL,
1853f4259b30SLisandro Dalcin                                        NULL,
1854f4259b30SLisandro Dalcin                                        NULL,
1855f4259b30SLisandro Dalcin                                /* 54*/ NULL,
1856f4259b30SLisandro Dalcin                                        NULL,
1857a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1858f4259b30SLisandro Dalcin                                        NULL,
1859a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18607dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1861f4259b30SLisandro Dalcin                                        NULL,
1862f4259b30SLisandro Dalcin                                        NULL,
1863f4259b30SLisandro Dalcin                                        NULL,
1864f4259b30SLisandro Dalcin                                        NULL,
1865f4259b30SLisandro Dalcin                                /* 64*/ NULL,
1866f4259b30SLisandro Dalcin                                        NULL,
1867f4259b30SLisandro Dalcin                                        NULL,
1868f4259b30SLisandro Dalcin                                        NULL,
1869f4259b30SLisandro Dalcin                                        NULL,
1870d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1871f4259b30SLisandro Dalcin                                        NULL,
187228d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1873f4259b30SLisandro Dalcin                                        NULL,
1874f4259b30SLisandro Dalcin                                        NULL,
1875f4259b30SLisandro Dalcin                                /* 74*/ NULL,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
1879f4259b30SLisandro Dalcin                                        NULL,
1880f4259b30SLisandro Dalcin                                /* 79*/ NULL,
1881f4259b30SLisandro Dalcin                                        NULL,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
18845bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1885f4259b30SLisandro Dalcin                                /* 84*/ NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
1887f4259b30SLisandro Dalcin                                        NULL,
1888f4259b30SLisandro Dalcin                                        NULL,
1889f4259b30SLisandro Dalcin                                        NULL,
1890f4259b30SLisandro Dalcin                                /* 89*/ NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
1893f4259b30SLisandro Dalcin                                        NULL,
1894f4259b30SLisandro Dalcin                                        NULL,
1895f4259b30SLisandro Dalcin                                /* 94*/ NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
1898f4259b30SLisandro Dalcin                                        NULL,
1899f4259b30SLisandro Dalcin                                        NULL,
1900f4259b30SLisandro Dalcin                                /* 99*/ NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903*2726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1904f4259b30SLisandro Dalcin                                        NULL,
1905f4259b30SLisandro Dalcin                                /*104*/ NULL,
190699cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1907d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1908d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
190995936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1910f4259b30SLisandro Dalcin                                /*109*/ NULL,
1911f4259b30SLisandro Dalcin                                        NULL,
1912f4259b30SLisandro Dalcin                                        NULL,
1913f4259b30SLisandro Dalcin                                        NULL,
19143b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1915f4259b30SLisandro Dalcin                                /*114*/ NULL,
1916f4259b30SLisandro Dalcin                                        NULL,
1917f4259b30SLisandro Dalcin                                        NULL,
1918f4259b30SLisandro Dalcin                                        NULL,
1919f4259b30SLisandro Dalcin                                        NULL,
1920f4259b30SLisandro Dalcin                                /*119*/ NULL,
1921f4259b30SLisandro Dalcin                                        NULL,
1922f4259b30SLisandro Dalcin                                        NULL,
1923f4259b30SLisandro Dalcin                                        NULL,
1924f4259b30SLisandro Dalcin                                        NULL,
1925f4259b30SLisandro Dalcin                                /*124*/ NULL,
1926f4259b30SLisandro Dalcin                                        NULL,
1927f4259b30SLisandro Dalcin                                        NULL,
1928f4259b30SLisandro Dalcin                                        NULL,
1929f4259b30SLisandro Dalcin                                        NULL,
1930f4259b30SLisandro Dalcin                                /*129*/ NULL,
1931f4259b30SLisandro Dalcin                                        NULL,
1932f4259b30SLisandro Dalcin                                        NULL,
1933f4259b30SLisandro Dalcin                                        NULL,
1934f4259b30SLisandro Dalcin                                        NULL,
1935f4259b30SLisandro Dalcin                                /*134*/ NULL,
1936f4259b30SLisandro Dalcin                                        NULL,
1937f4259b30SLisandro Dalcin                                        NULL,
1938f4259b30SLisandro Dalcin                                        NULL,
1939f4259b30SLisandro Dalcin                                        NULL,
194046533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
1941f4259b30SLisandro Dalcin                                        NULL,
1942f4259b30SLisandro Dalcin                                        NULL,
1943f4259b30SLisandro Dalcin                                        NULL,
1944f4259b30SLisandro Dalcin                                        NULL,
194559f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
194699cafbc1SBarry Smith };
1947a30f8f8cSSatish Balay 
1948b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1949a23d5eceSKris Buschelman {
1950476417e5SBarry Smith   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
1951dfbe8321SBarry Smith   PetscErrorCode ierr;
1952535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
19535d2a9ed1SStefano Zampini   PetscMPIInt    size;
1954a23d5eceSKris Buschelman 
1955a23d5eceSKris Buschelman   PetscFunctionBegin;
195633d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
195726283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
195826283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1959e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1960476417e5SBarry Smith   if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N);
1961476417e5SBarry Smith   if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n);
1962899cda47SBarry Smith 
1963d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1964d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1965c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1966a23d5eceSKris Buschelman 
1967d0f46423SBarry Smith   B->rmap->bs = bs;
1968a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1969a23d5eceSKris Buschelman   b->mbs      = mbs;
1970a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1971de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1972de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1973a23d5eceSKris Buschelman 
1974a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1975d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1976a23d5eceSKris Buschelman   }
1977d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1978d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1979a23d5eceSKris Buschelman 
1980d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1981d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1982a23d5eceSKris Buschelman 
1983cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
1984cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
1985cb7b82ddSBarry Smith #else
1986cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
1987cb7b82ddSBarry Smith #endif
1988cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
1989cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
1990cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
1991cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
1992cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
1993cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
1994cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
1995cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
1996cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
1997cb7b82ddSBarry Smith 
1998cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
1999ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr);
2000cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2001cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
20025d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2003cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2004cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2005cb7b82ddSBarry Smith 
2006526dfc15SBarry Smith   if (!B->preallocated) {
2007f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2008d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
20099c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
20103bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2011ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2012526dfc15SBarry Smith   }
2013a23d5eceSKris Buschelman 
2014526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2015526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
201626fbe8dcSKarl Rupp 
2017526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2018cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2019cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2020a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2021a23d5eceSKris Buschelman }
2022a23d5eceSKris Buschelman 
2023dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2024dfb205c3SBarry Smith {
202502106b30SBarry Smith   PetscInt       m,rstart,cend;
2026f4259b30SLisandro Dalcin   PetscInt       i,j,d,nz,bd, nz_max=0,*d_nnz=NULL,*o_nnz=NULL;
2027f4259b30SLisandro Dalcin   const PetscInt *JJ    =NULL;
2028f4259b30SLisandro Dalcin   PetscScalar    *values=NULL;
2029bb80cfbbSStefano Zampini   PetscBool      roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented;
2030dfb205c3SBarry Smith   PetscErrorCode ierr;
20313bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2032dfb205c3SBarry Smith 
2033dfb205c3SBarry Smith   PetscFunctionBegin;
2034ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2035dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2036dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2037dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2038dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2039e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2040dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2041dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2042dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2043dfb205c3SBarry Smith 
2044dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2045dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2046dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2047dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2048dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
20490cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2050dfb205c3SBarry Smith     JJ     = jj + ii[i];
20510cd7f59aSBarry Smith     bd     = 0;
2052dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
20530cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2054dfb205c3SBarry Smith       JJ++;
20550cd7f59aSBarry Smith       bd++;
2056dfb205c3SBarry Smith     }
2057dfb205c3SBarry Smith     d  = 0;
2058dfb205c3SBarry Smith     for (; j<nz; j++) {
2059dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2060dfb205c3SBarry Smith       d++;
2061dfb205c3SBarry Smith     }
2062dfb205c3SBarry Smith     d_nnz[i] = d;
20630cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20640cd7f59aSBarry Smith     nz       = nz - bd;
20650cd7f59aSBarry Smith     nz_max = PetscMax(nz_max,nz);
2066dfb205c3SBarry Smith   }
2067dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2068bb80cfbbSStefano Zampini   ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
2069dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2070dfb205c3SBarry Smith 
2071dfb205c3SBarry Smith   values = (PetscScalar*)V;
2072dfb205c3SBarry Smith   if (!values) {
2073580bdb30SBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2074dfb205c3SBarry Smith   }
2075dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2076dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2077dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2078dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2079bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2080dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2081dfb205c3SBarry Smith       ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2082bb80cfbbSStefano Zampini     } else {                    /* block ordering does not match so we can only insert one block at a time. */
2083bb80cfbbSStefano Zampini       PetscInt j;
20840cd7f59aSBarry Smith       for (j=0; j<ncols; j++) {
20850cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
20860cd7f59aSBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
20870cd7f59aSBarry Smith       }
20880cd7f59aSBarry Smith     }
2089dfb205c3SBarry Smith   }
2090dfb205c3SBarry Smith 
2091dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
20923bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
20933bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
2094dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2095dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20963bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
20973bd0feecSPierre Jolivet 
20987827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2099dfb205c3SBarry Smith   PetscFunctionReturn(0);
2100dfb205c3SBarry Smith }
2101dfb205c3SBarry Smith 
21020bad9183SKris Buschelman /*MC
2103fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2104828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2105828413b8SBarry Smith    the matrix is stored.
2106828413b8SBarry Smith 
2107828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2108828413b8SBarry Smith    can call MatSetOption(Mat, MAT_HERMITIAN);
21090bad9183SKris Buschelman 
21100bad9183SKris Buschelman    Options Database Keys:
21110bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
21120bad9183SKris Buschelman 
2113476417e5SBarry Smith    Notes:
2114476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2115476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2116476417e5SBarry Smith 
21170bad9183SKris Buschelman    Level: beginner
21180bad9183SKris Buschelman 
2119fd292e60Sprj- .seealso: MatCreateBAIJ(), MATSEQSBAIJ, MatType
21200bad9183SKris Buschelman M*/
21210bad9183SKris Buschelman 
21228cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2123b5df2d14SHong Zhang {
2124b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2125dfbe8321SBarry Smith   PetscErrorCode ierr;
212694ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2127b5df2d14SHong Zhang 
2128b5df2d14SHong Zhang   PetscFunctionBegin;
2129b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2130b0a32e0cSBarry Smith   B->data = (void*)b;
2131b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2132b5df2d14SHong Zhang 
2133b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2134b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2135b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2136b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
213726fbe8dcSKarl Rupp 
2138ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRMPI(ierr);
2139ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRMPI(ierr);
2140b5df2d14SHong Zhang 
2141b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2142854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2143b5df2d14SHong Zhang 
2144b5df2d14SHong Zhang   /* build cache for off array entries formed */
2145ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
214626fbe8dcSKarl Rupp 
2147b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21480298fd71SBarry Smith   b->colmap      = NULL;
21490298fd71SBarry Smith   b->garray      = NULL;
2150b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2151b5df2d14SHong Zhang 
2152b5df2d14SHong Zhang   /* stuff used in block assembly */
2153f4259b30SLisandro Dalcin   b->barray = NULL;
2154b5df2d14SHong Zhang 
2155b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2156f4259b30SLisandro Dalcin   b->lvec    = NULL;
2157f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2158f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2159f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2160f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2161f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2162f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2163f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2164b5df2d14SHong Zhang 
2165b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2166f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2167f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2168b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2169b5df2d14SHong Zhang 
2170b5df2d14SHong Zhang   /* hash table stuff */
2171f4259b30SLisandro Dalcin   b->ht           = NULL;
2172f4259b30SLisandro Dalcin   b->hd           = NULL;
2173b5df2d14SHong Zhang   b->ht_size      = 0;
2174b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2175b5df2d14SHong Zhang   b->ht_fact      = 0;
2176b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2177b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2178b5df2d14SHong Zhang 
21797dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21807a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21817a868f3eSHong Zhang 
2182f4259b30SLisandro Dalcin   b->in_loc = NULL;
2183f4259b30SLisandro Dalcin   b->v_loc  = NULL;
218459ffdab8SBarry Smith   b->n_loc  = 0;
218594ae4db5SBarry Smith 
2186bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2187bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2188bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2189bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
21906214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21916214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
21926214f412SHong Zhang #endif
2193d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2194d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK);CHKERRQ(ierr);
2195d24d4204SJose E. Roman #endif
219628d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
219728d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
2198aa5a9175SDahai Guo 
219923ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
220023ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
220123ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
220223ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
22039899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
2204eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
220513647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
220613647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
2207eb1ec7c1SStefano Zampini #else
2208eb1ec7c1SStefano Zampini   B->hermitian                  = PETSC_TRUE;
2209eb1ec7c1SStefano Zampini   B->hermitian_set              = PETSC_TRUE;
2210eb1ec7c1SStefano Zampini #endif
221113647f61SHong Zhang 
221217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
221394ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
221494ae4db5SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
221594ae4db5SBarry Smith   if (flg) {
221694ae4db5SBarry Smith     PetscReal fact = 1.39;
221794ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
221894ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
221994ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
222094ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
222194ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
222294ae4db5SBarry Smith   }
222394ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2224b5df2d14SHong Zhang   PetscFunctionReturn(0);
2225b5df2d14SHong Zhang }
2226b5df2d14SHong Zhang 
2227209238afSKris Buschelman /*MC
2228002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2229209238afSKris Buschelman 
2230209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2231209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2232209238afSKris Buschelman 
2233209238afSKris Buschelman    Options Database Keys:
2234209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2235209238afSKris Buschelman 
2236209238afSKris Buschelman   Level: beginner
2237209238afSKris Buschelman 
2238209238afSKris Buschelman .seealso: MatCreateMPISBAIJ, MATSEQSBAIJ, MATMPISBAIJ
2239209238afSKris Buschelman M*/
2240209238afSKris Buschelman 
2241b5df2d14SHong Zhang /*@C
2242b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2243b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2244b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2245b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2246b5df2d14SHong Zhang 
2247b5df2d14SHong Zhang    Collective on Mat
2248b5df2d14SHong Zhang 
2249b5df2d14SHong Zhang    Input Parameters:
22501c4f3114SJed Brown +  B - the matrix
2251bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2252bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2253b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2254b5df2d14SHong Zhang            submatrix  (same for all local rows)
2255b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
22566d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
22570298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
225895742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2259b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2260b5df2d14SHong Zhang            submatrix (same for all local rows).
2261b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2262c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
22630298fd71SBarry Smith            (possibly different for each block row) or NULL.
2264b5df2d14SHong Zhang 
2265b5df2d14SHong Zhang 
2266b5df2d14SHong Zhang    Options Database Keys:
2267a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2268b5df2d14SHong Zhang                      block calculations (much slower)
2269a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2270b5df2d14SHong Zhang 
2271b5df2d14SHong Zhang    Notes:
2272b5df2d14SHong Zhang 
2273b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2274b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2275b5df2d14SHong Zhang 
227649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
227749a6f317SBarry Smith 
2278b5df2d14SHong Zhang    Storage Information:
2279b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2280b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2281b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2282b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2283b5df2d14SHong Zhang 
2284b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2285b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
22860298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2287b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2288b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2289b5df2d14SHong Zhang 
2290aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2291aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2292aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2293aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2294aa95bbe8SBarry Smith 
2295b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2296b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2297b5df2d14SHong Zhang 
2298b5df2d14SHong Zhang .vb
2299b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2300a4b1a0f6SJed Brown           --------------------------
2301c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2302c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2303c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2304a4b1a0f6SJed Brown           --------------------------
2305b5df2d14SHong Zhang .ve
2306b5df2d14SHong Zhang 
2307b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2308b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
23096d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23106d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2311b5df2d14SHong Zhang 
23126d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23136d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2314c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2315c2fc9fa9SBarry Smith 
2316b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2317b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2318b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2319b5df2d14SHong Zhang    matrices.
2320b5df2d14SHong Zhang 
2321b5df2d14SHong Zhang    Level: intermediate
2322b5df2d14SHong Zhang 
2323ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2324b5df2d14SHong Zhang @*/
23257087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2326b5df2d14SHong Zhang {
23274ac538c5SBarry Smith   PetscErrorCode ierr;
2328b5df2d14SHong Zhang 
2329b5df2d14SHong Zhang   PetscFunctionBegin;
23306ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
23316ba663aaSJed Brown   PetscValidType(B,1);
23326ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
23334ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2334b5df2d14SHong Zhang   PetscFunctionReturn(0);
2335b5df2d14SHong Zhang }
2336b5df2d14SHong Zhang 
2337a30f8f8cSSatish Balay /*@C
233869b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2339a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2340a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2341a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2342a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2343a30f8f8cSSatish Balay 
2344d083f849SBarry Smith    Collective
2345a30f8f8cSSatish Balay 
2346a30f8f8cSSatish Balay    Input Parameters:
2347a30f8f8cSSatish Balay +  comm - MPI communicator
2348bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2349bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2350a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2351a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2352a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2353a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2354a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2355a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2356a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2357a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2358a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2359a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2360a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
23616d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
23620298fd71SBarry Smith            (possibly different for each block block row) or NULL.
236395742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
236495742e49SBarry Smith            set its value even if it is zero.
2365a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2366a30f8f8cSSatish Balay            submatrix (same for all local rows).
2367a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2368a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23690298fd71SBarry Smith            each block row) or NULL.
2370a30f8f8cSSatish Balay 
2371a30f8f8cSSatish Balay    Output Parameter:
2372a30f8f8cSSatish Balay .  A - the matrix
2373a30f8f8cSSatish Balay 
2374a30f8f8cSSatish Balay    Options Database Keys:
2375a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2376a30f8f8cSSatish Balay                      block calculations (much slower)
2377a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2378a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2379a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2380a30f8f8cSSatish Balay 
2381175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2382f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2383175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2384175b88e8SBarry Smith 
2385a30f8f8cSSatish Balay    Notes:
2386d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
23876d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2388d1be2dadSMatthew Knepley 
2389a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2390a30f8f8cSSatish Balay    (possibly both).
2391a30f8f8cSSatish Balay 
2392a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2393a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2394a30f8f8cSSatish Balay 
239549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
239649a6f317SBarry Smith 
2397a30f8f8cSSatish Balay    Storage Information:
2398a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2399a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2400a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2401a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2402a30f8f8cSSatish Balay 
2403a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2404a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
24050298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2406a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2407a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2408a30f8f8cSSatish Balay 
2409a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2410a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2411a30f8f8cSSatish Balay 
2412a30f8f8cSSatish Balay .vb
2413a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2414a4b1a0f6SJed Brown           --------------------------
2415c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2416c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2417c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2418a4b1a0f6SJed Brown           --------------------------
2419a30f8f8cSSatish Balay .ve
2420a30f8f8cSSatish Balay 
2421a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2422a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
24236d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
24246d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2425a30f8f8cSSatish Balay 
24266d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
24276d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2428a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2429a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2430a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2431a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2432a30f8f8cSSatish Balay    matrices.
2433a30f8f8cSSatish Balay 
2434a30f8f8cSSatish Balay    Level: intermediate
2435a30f8f8cSSatish Balay 
243669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2437a30f8f8cSSatish Balay @*/
2438a30f8f8cSSatish Balay 
243969b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2440a30f8f8cSSatish Balay {
24416849ba73SBarry Smith   PetscErrorCode ierr;
24421302d50aSBarry Smith   PetscMPIInt    size;
2443a30f8f8cSSatish Balay 
2444a30f8f8cSSatish Balay   PetscFunctionBegin;
2445f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2446f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2447ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
2448273d9f13SBarry Smith   if (size > 1) {
2449b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2450b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2451273d9f13SBarry Smith   } else {
2452273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2453273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2454273d9f13SBarry Smith   }
2455a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2456a30f8f8cSSatish Balay }
2457a30f8f8cSSatish Balay 
2458a30f8f8cSSatish Balay 
24596849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2460a30f8f8cSSatish Balay {
2461a30f8f8cSSatish Balay   Mat            mat;
2462a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2463dfbe8321SBarry Smith   PetscErrorCode ierr;
2464d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2465387bc808SHong Zhang   PetscScalar    *array;
2466a30f8f8cSSatish Balay 
2467a30f8f8cSSatish Balay   PetscFunctionBegin;
2468f4259b30SLisandro Dalcin   *newmat = NULL;
246926fbe8dcSKarl Rupp 
2470ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2471d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
24727adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
24731e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
24741e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2475e1b6402fSHong Zhang 
2476d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2477273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
247882327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24797fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24807fff6886SHong Zhang 
2481b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2482a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2483a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2484a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2485a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2486a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2487a30f8f8cSSatish Balay 
2488a30f8f8cSSatish Balay   a->size         = oldmat->size;
2489a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2490a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2491a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2492f4259b30SLisandro Dalcin   a->rowindices   = NULL;
2493f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
2494a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2495f4259b30SLisandro Dalcin   a->barray       = NULL;
2496899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2497899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2498899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2499899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2500a30f8f8cSSatish Balay 
2501a30f8f8cSSatish Balay   /* hash table stuff */
2502f4259b30SLisandro Dalcin   a->ht           = NULL;
2503f4259b30SLisandro Dalcin   a->hd           = NULL;
2504a30f8f8cSSatish Balay   a->ht_size      = 0;
2505a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2506a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2507a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2508a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2509a30f8f8cSSatish Balay 
2510580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr);
2511a30f8f8cSSatish Balay   if (oldmat->colmap) {
2512a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2513a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2514a30f8f8cSSatish Balay #else
2515854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
25163bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2517580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
2518a30f8f8cSSatish Balay #endif
2519f4259b30SLisandro Dalcin   } else a->colmap = NULL;
2520387bc808SHong Zhang 
2521a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2522785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
25233bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2524580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
2525f4259b30SLisandro Dalcin   } else a->garray = NULL;
2526a30f8f8cSSatish Balay 
2527ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2528a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
25293bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2530a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
25313bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
253282327fa8SHong Zhang 
253382327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
25343bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
253582327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
25363bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2537387bc808SHong Zhang 
2538387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
25391ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2540778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2541778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
25421ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
25431ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2544778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
25451ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
25463bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
25473bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
25483bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
25493bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
25503bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2551387bc808SHong Zhang 
2552387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2553387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2554387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
25553bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
255682327fa8SHong Zhang 
2557a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
25583bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2559a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
25603bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2561140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2562a30f8f8cSSatish Balay   *newmat = mat;
2563a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2564a30f8f8cSSatish Balay }
2565a30f8f8cSSatish Balay 
2566618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2567618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2568618cc2edSLisandro Dalcin 
2569618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer)
257095936485SShri Abhyankar {
257195936485SShri Abhyankar   PetscErrorCode ierr;
25727f489da9SVaclav Hapla   PetscBool      isbinary;
257395936485SShri Abhyankar 
257495936485SShri Abhyankar   PetscFunctionBegin;
25757f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
2576618cc2edSLisandro Dalcin   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
2577618cc2edSLisandro Dalcin   ierr = MatLoad_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
257895936485SShri Abhyankar   PetscFunctionReturn(0);
257995936485SShri Abhyankar }
258095936485SShri Abhyankar 
2581dcf5cc72SBarry Smith /*XXXXX@
2582a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2583a30f8f8cSSatish Balay 
2584a30f8f8cSSatish Balay    Input Parameters:
2585a30f8f8cSSatish Balay .  mat  - the matrix
2586a30f8f8cSSatish Balay .  fact - factor
2587a30f8f8cSSatish Balay 
2588c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2589a30f8f8cSSatish Balay 
2590a30f8f8cSSatish Balay    Level: advanced
2591a30f8f8cSSatish Balay 
2592a30f8f8cSSatish Balay   Notes:
2593a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2594a30f8f8cSSatish Balay 
2595a30f8f8cSSatish Balay .seealso: MatSetOption()
2596dcf5cc72SBarry Smith @XXXXX*/
2597dcf5cc72SBarry Smith 
259824d5174aSHong Zhang 
2599985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
260024d5174aSHong Zhang {
260124d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2602f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2603ca54ac64SHong Zhang   PetscReal      atmp;
260487828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2605dfbe8321SBarry Smith   PetscErrorCode ierr;
26061302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
26071302d50aSBarry Smith   PetscMPIInt    rank,size;
26081302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
260987828ca2SBarry Smith   PetscScalar    *va;
26108a1c53f2SBarry Smith   MatScalar      *ba;
2611f4c0e9e4SHong Zhang   MPI_Status     stat;
261224d5174aSHong Zhang 
261324d5174aSHong Zhang   PetscFunctionBegin;
2614e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
26150298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
26161ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2617f4c0e9e4SHong Zhang 
2618ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr);
2619ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRMPI(ierr);
2620f4c0e9e4SHong Zhang 
2621d0f46423SBarry Smith   bs  = A->rmap->bs;
2622f4c0e9e4SHong Zhang   mbs = a->mbs;
2623f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2624f4c0e9e4SHong Zhang   ba  = b->a;
2625f4c0e9e4SHong Zhang   bi  = b->i;
2626f4c0e9e4SHong Zhang   bj  = b->j;
2627f4c0e9e4SHong Zhang 
2628f4c0e9e4SHong Zhang   /* find ownerships */
2629d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2630f4c0e9e4SHong Zhang 
2631f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2632580bdb30SBarry Smith   ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2633f4c0e9e4SHong Zhang 
2634f4c0e9e4SHong Zhang   /* row_max for B */
2635b8475685SHong Zhang   if (rank != size-1) {
2636f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2637f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2638f4c0e9e4SHong Zhang       brow  = bs*i;
2639f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2640f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2641f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2642ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
264304d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2644f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2645f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2646ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2647ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2648f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2649f4c0e9e4SHong Zhang           }
2650f4c0e9e4SHong Zhang         }
2651f4c0e9e4SHong Zhang         bj++;
2652f4c0e9e4SHong Zhang       }
2653f4c0e9e4SHong Zhang     }
2654f4c0e9e4SHong Zhang 
2655f4c0e9e4SHong Zhang     /* send values to its owners */
2656f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2657f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2658ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
265955b25c41SPierre Jolivet       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr);
2660ca54ac64SHong Zhang     }
2661f4c0e9e4SHong Zhang   }
2662f4c0e9e4SHong Zhang 
2663f4c0e9e4SHong Zhang   /* receive values */
2664ca54ac64SHong Zhang   if (rank) {
2665f4c0e9e4SHong Zhang     rvalues = work;
2666ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2667f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2668ffc4695bSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRMPI(ierr);
2669f4c0e9e4SHong Zhang       /* process values */
2670f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2671ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2672f4c0e9e4SHong Zhang       }
2673f4c0e9e4SHong Zhang     }
2674ca54ac64SHong Zhang   }
2675f4c0e9e4SHong Zhang 
26761ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2677ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
267824d5174aSHong Zhang   PetscFunctionReturn(0);
267924d5174aSHong Zhang }
26802798e883SHong Zhang 
268141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
26822798e883SHong Zhang {
26832798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2684dfbe8321SBarry Smith   PetscErrorCode    ierr;
2685d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
26863649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2687ffe4fb16SHong Zhang   Vec               bb1;
26883649974fSBarry Smith   const PetscScalar *b;
2689ffe4fb16SHong Zhang 
2690ffe4fb16SHong Zhang   PetscFunctionBegin;
2691e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2692e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2693ffe4fb16SHong Zhang 
2694a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
269541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2696a2b30743SBarry Smith     PetscFunctionReturn(0);
2697a2b30743SBarry Smith   }
2698a2b30743SBarry Smith 
2699ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2700ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
270141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2702ffe4fb16SHong Zhang       its--;
2703ffe4fb16SHong Zhang     }
2704ffe4fb16SHong Zhang 
2705ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2706ffe4fb16SHong Zhang     while (its--) {
2707ffe4fb16SHong Zhang 
2708ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2709ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2710ffe4fb16SHong Zhang 
2711ffe4fb16SHong Zhang       /* copy xx into slvec0a */
27121ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
27131ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2714580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr);
27151ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2716ffe4fb16SHong Zhang 
2717efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2718ffe4fb16SHong Zhang 
2719ffe4fb16SHong Zhang       /* copy bb into slvec1a */
27201ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
27213649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2722580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr);
27231ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2724ffe4fb16SHong Zhang 
2725ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2726fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2727ffe4fb16SHong Zhang 
2728ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27291ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2730a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2731ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2732ffe4fb16SHong Zhang 
2733ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2734ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2735ffe4fb16SHong Zhang 
2736ffe4fb16SHong Zhang       /* local diagonal sweep */
273741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2738ffe4fb16SHong Zhang     }
27396bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2740fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
274141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2742fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
274341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2744fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2745fa22f6d0SBarry Smith     Vec               xx1;
2746ace3abfcSBarry Smith     PetscBool         hasop;
274720f1ed55SBarry Smith     const PetscScalar *diag;
2748887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
274920f1ed55SBarry Smith     PetscInt          i,n;
2750fa22f6d0SBarry Smith 
2751fa22f6d0SBarry Smith     if (!mat->xx1) {
2752fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2753fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2754fa22f6d0SBarry Smith     }
2755fa22f6d0SBarry Smith     xx1 = mat->xx1;
2756fa22f6d0SBarry Smith     bb1 = mat->bb1;
2757fa22f6d0SBarry Smith 
275841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2759fa22f6d0SBarry Smith 
2760fa22f6d0SBarry Smith     if (!mat->diag) {
2761effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27622a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2763fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2764fa22f6d0SBarry Smith     }
2765fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2766fa22f6d0SBarry Smith 
2767fa22f6d0SBarry Smith     if (hasop) {
2768fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2769887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
277020f1ed55SBarry Smith     } else {
277120f1ed55SBarry Smith       /*
277220f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
277320f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2774887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
277520f1ed55SBarry Smith       */
277620f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27773649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27783649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
277920f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
278020f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2781887ee2caSBarry Smith       if (omega == 1.0) {
278226fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
278320f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2784887ee2caSBarry Smith       } else {
278526fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2786887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2787887ee2caSBarry Smith       }
278820f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27893649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27903649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
279120f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
279220f1ed55SBarry Smith     }
2793fa22f6d0SBarry Smith 
2794fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2795fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2796fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2797fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2798fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2799580bdb30SBarry Smith     ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
2800fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2801fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2802fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2803fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2804effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2805fa22f6d0SBarry Smith 
2806fa22f6d0SBarry Smith     /* local sweep */
280741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2808fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2809f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2810ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2811ffe4fb16SHong Zhang }
2812ffe4fb16SHong Zhang 
2813dfb205c3SBarry Smith /*@
2814dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2815dfb205c3SBarry Smith          CSR format the local rows.
2816dfb205c3SBarry Smith 
2817d083f849SBarry Smith    Collective
2818dfb205c3SBarry Smith 
2819dfb205c3SBarry Smith    Input Parameters:
2820dfb205c3SBarry Smith +  comm - MPI communicator
2821dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2822dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2823dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2824dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2825dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2826dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2827dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2828483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2829dfb205c3SBarry Smith .   j - column indices
2830dfb205c3SBarry Smith -   a - matrix values
2831dfb205c3SBarry Smith 
2832dfb205c3SBarry Smith    Output Parameter:
2833dfb205c3SBarry Smith .   mat - the matrix
2834dfb205c3SBarry Smith 
2835dfb205c3SBarry Smith    Level: intermediate
2836dfb205c3SBarry Smith 
2837dfb205c3SBarry Smith    Notes:
2838dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2839dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2840dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2841dfb205c3SBarry Smith 
2842dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2843dfb205c3SBarry Smith 
2844dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
284569b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2846dfb205c3SBarry Smith @*/
28477087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2848dfb205c3SBarry Smith {
2849dfb205c3SBarry Smith   PetscErrorCode ierr;
2850dfb205c3SBarry Smith 
2851dfb205c3SBarry Smith 
2852dfb205c3SBarry Smith   PetscFunctionBegin;
2853f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2854dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2855dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2856dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2857dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2858dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2859dfb205c3SBarry Smith   PetscFunctionReturn(0);
2860dfb205c3SBarry Smith }
2861dfb205c3SBarry Smith 
2862dfb205c3SBarry Smith 
2863dfb205c3SBarry Smith /*@C
2864664954b6SBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values
2865dfb205c3SBarry Smith 
2866d083f849SBarry Smith    Collective
2867dfb205c3SBarry Smith 
2868dfb205c3SBarry Smith    Input Parameters:
28691c4f3114SJed Brown +  B - the matrix
2870dfb205c3SBarry Smith .  bs - the block size
2871dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2872dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2873dfb205c3SBarry Smith -  v - optional values in the matrix
2874dfb205c3SBarry Smith 
2875664954b6SBarry Smith    Level: advanced
2876664954b6SBarry Smith 
2877664954b6SBarry Smith    Notes:
28780cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28790cd7f59aSBarry Smith    and usually the numerical values as well
28800cd7f59aSBarry Smith 
288150c5228eSBarry Smith    Any entries below the diagonal are ignored
2882dfb205c3SBarry Smith 
288369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2884dfb205c3SBarry Smith @*/
28857087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2886dfb205c3SBarry Smith {
28874ac538c5SBarry Smith   PetscErrorCode ierr;
2888dfb205c3SBarry Smith 
2889dfb205c3SBarry Smith   PetscFunctionBegin;
28904ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2891dfb205c3SBarry Smith   PetscFunctionReturn(0);
2892dfb205c3SBarry Smith }
2893dfb205c3SBarry Smith 
289410c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
28954dcd73b1SHong Zhang {
28964dcd73b1SHong Zhang   PetscErrorCode ierr;
289710c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
289810c56fdeSHong Zhang   PetscInt       *indx;
289910c56fdeSHong Zhang   PetscScalar    *values;
2900dfb205c3SBarry Smith 
29014dcd73b1SHong Zhang   PetscFunctionBegin;
29024dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
290310c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
290410c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
2905de25e9cbSPierre Jolivet     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
290610c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
2907de25e9cbSPierre Jolivet     PetscMPIInt    rank,size;
29084dcd73b1SHong Zhang 
290910c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
291010c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
291110c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
2912da91a574SPierre Jolivet       ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N);
291310c56fdeSHong Zhang     }
2914da91a574SPierre Jolivet     nbs = n/cbs;
29154dcd73b1SHong Zhang 
29164dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
2917de25e9cbSPierre Jolivet     ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */
2918de25e9cbSPierre Jolivet 
2919ffc4695bSBarry Smith     ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr);
2920ffc4695bSBarry Smith     ierr = MPI_Comm_rank(comm,&size);CHKERRMPI(ierr);
2921de25e9cbSPierre Jolivet     if (rank == size-1) {
2922de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
2923de25e9cbSPierre Jolivet       if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs);
2924de25e9cbSPierre Jolivet     }
2925de25e9cbSPierre Jolivet 
2926de25e9cbSPierre Jolivet     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */
2927e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
292810c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
29294dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
29304dcd73b1SHong Zhang       nnz  = nnz/bs;
29314dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
29324dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
29334dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
29344dcd73b1SHong Zhang     }
2935e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
29364dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
29374dcd73b1SHong Zhang 
29384dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
2939de25e9cbSPierre Jolivet     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
29404dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
2941ce94fc41SPierre Jolivet     ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr);
2942ce94fc41SPierre Jolivet     ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr);
29434dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
29444dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
29454dcd73b1SHong Zhang   }
29464dcd73b1SHong Zhang 
294710c56fdeSHong Zhang   /* numeric phase */
29484dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
294910c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
29504dcd73b1SHong Zhang 
2951e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
29524dcd73b1SHong Zhang   for (i=0; i<m; i++) {
29534dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29544dcd73b1SHong Zhang     Ii   = i + rstart;
295510c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
29564dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29574dcd73b1SHong Zhang   }
2958e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
295910c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
296010c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29614dcd73b1SHong Zhang   PetscFunctionReturn(0);
29624dcd73b1SHong Zhang }
2963