xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 27f1aa6038838b603fd1266605a5af0f7aef79c0)
173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h"
5a30f8f8cSSatish Balay #include "mpisbaij.h"
6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
7a30f8f8cSSatish Balay 
8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat);
940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat);
1187828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *);
1287828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode);
1387828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
1487828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
1587828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
16a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat);
1787828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
1887828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
19d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec);
20c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec);
21a30f8f8cSSatish Balay 
22a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2387828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
24a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
25a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
26a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
27a30f8f8cSSatish Balay    into the single precision data structures.
28a30f8f8cSSatish Balay */
29a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
30a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
31a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
35a30f8f8cSSatish Balay #else
36a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
41a30f8f8cSSatish Balay #endif
42a30f8f8cSSatish Balay 
43a30f8f8cSSatish Balay EXTERN_C_BEGIN
444a2ae208SSatish Balay #undef __FUNCT__
454a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
46a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat)
47a30f8f8cSSatish Balay {
48f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
49a30f8f8cSSatish Balay   int          ierr;
50a30f8f8cSSatish Balay 
51a30f8f8cSSatish Balay   PetscFunctionBegin;
52a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   PetscFunctionReturn(0);
55a30f8f8cSSatish Balay }
56a30f8f8cSSatish Balay EXTERN_C_END
57a30f8f8cSSatish Balay 
58a30f8f8cSSatish Balay EXTERN_C_BEGIN
594a2ae208SSatish Balay #undef __FUNCT__
604a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
61a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat)
62a30f8f8cSSatish Balay {
63f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
64a30f8f8cSSatish Balay   int          ierr;
65a30f8f8cSSatish Balay 
66a30f8f8cSSatish Balay   PetscFunctionBegin;
67a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   PetscFunctionReturn(0);
70a30f8f8cSSatish Balay }
71a30f8f8cSSatish Balay EXTERN_C_END
72a30f8f8cSSatish Balay 
73a30f8f8cSSatish Balay /*
74a30f8f8cSSatish Balay      Local utility routine that creates a mapping from the global column
75a30f8f8cSSatish Balay    number to the local number in the off-diagonal part of the local
76a30f8f8cSSatish Balay    storage of the matrix.  This is done in a non scable way since the
77a30f8f8cSSatish Balay    length of colmap equals the global matrix length.
78a30f8f8cSSatish Balay */
794a2ae208SSatish Balay #undef __FUNCT__
804a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private"
81a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat)
82a30f8f8cSSatish Balay {
83a30f8f8cSSatish Balay   PetscFunctionBegin;
8429bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
8596e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
86a30f8f8cSSatish Balay }
87a30f8f8cSSatish Balay 
88a30f8f8cSSatish Balay #define CHUNKSIZE  10
89a30f8f8cSSatish Balay 
90a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
91a30f8f8cSSatish Balay { \
92a30f8f8cSSatish Balay  \
93a30f8f8cSSatish Balay     brow = row/bs;  \
94a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
95a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
96a30f8f8cSSatish Balay       bcol = col/bs; \
97a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
98a30f8f8cSSatish Balay       low = 0; high = nrow; \
99a30f8f8cSSatish Balay       while (high-low > 3) { \
100a30f8f8cSSatish Balay         t = (low+high)/2; \
101a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
102a30f8f8cSSatish Balay         else              low  = t; \
103a30f8f8cSSatish Balay       } \
104a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
105a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
106a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
107a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
108a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
109a30f8f8cSSatish Balay           else                    *bap  = value;  \
110a30f8f8cSSatish Balay           goto a_noinsert; \
111a30f8f8cSSatish Balay         } \
112a30f8f8cSSatish Balay       } \
113a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
11429bbc08cSBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
115a30f8f8cSSatish Balay       if (nrow >= rmax) { \
116a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
117a30f8f8cSSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
118a30f8f8cSSatish Balay         MatScalar *new_a; \
119a30f8f8cSSatish Balay  \
12029bbc08cSBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
121a30f8f8cSSatish Balay  \
122a30f8f8cSSatish Balay         /* malloc new storage space */ \
123a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \
12482502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
125a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
126a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
127a30f8f8cSSatish Balay  \
128a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
129a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
130a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
131a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
132a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
133a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
134a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
13587828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
136a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
137a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
138a30f8f8cSSatish Balay         /* free up old matrix storage */ \
139a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
140a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
141a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
142a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
143a30f8f8cSSatish Balay         } \
144a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
145a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
146a30f8f8cSSatish Balay  \
147a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
148a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
149b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
150a30f8f8cSSatish Balay         a->s_maxnz += bs2*CHUNKSIZE; \
151a30f8f8cSSatish Balay         a->reallocs++; \
152a30f8f8cSSatish Balay         a->s_nz++; \
153a30f8f8cSSatish Balay       } \
154a30f8f8cSSatish Balay       N = nrow++ - 1;  \
155a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
156a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
157a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
158a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
159a30f8f8cSSatish Balay       } \
160a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
161a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
162a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
163a30f8f8cSSatish Balay       a_noinsert:; \
164a30f8f8cSSatish Balay     ailen[brow] = nrow; \
165a30f8f8cSSatish Balay }
166a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
167a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
168a30f8f8cSSatish Balay { \
169a30f8f8cSSatish Balay     brow = row/bs;  \
170a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
171a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
172a30f8f8cSSatish Balay       bcol = col/bs; \
173a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
174a30f8f8cSSatish Balay       low = 0; high = nrow; \
175a30f8f8cSSatish Balay       while (high-low > 3) { \
176a30f8f8cSSatish Balay         t = (low+high)/2; \
177a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
178a30f8f8cSSatish Balay         else              low  = t; \
179a30f8f8cSSatish Balay       } \
180a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
181a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
182a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
183a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
184a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
185a30f8f8cSSatish Balay           else                    *bap  = value;  \
186a30f8f8cSSatish Balay           goto b_noinsert; \
187a30f8f8cSSatish Balay         } \
188a30f8f8cSSatish Balay       } \
189a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
19029bbc08cSBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
191a30f8f8cSSatish Balay       if (nrow >= rmax) { \
192a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
193a30f8f8cSSatish Balay         int       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
194a30f8f8cSSatish Balay         MatScalar *new_a; \
195a30f8f8cSSatish Balay  \
19629bbc08cSBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
197a30f8f8cSSatish Balay  \
198a30f8f8cSSatish Balay         /* malloc new storage space */ \
199a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \
20082502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
201a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
202a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
203a30f8f8cSSatish Balay  \
204a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
205a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
206a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
207a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
208a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
209a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
210a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
211a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
212a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
213a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
214a30f8f8cSSatish Balay         /* free up old matrix storage */ \
215a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
216a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
217a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
218a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
219a30f8f8cSSatish Balay         } \
220a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
221a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
222a30f8f8cSSatish Balay  \
223a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
224a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
225b0a32e0cSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
226a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
227a30f8f8cSSatish Balay         b->reallocs++; \
228a30f8f8cSSatish Balay         b->nz++; \
229a30f8f8cSSatish Balay       } \
230a30f8f8cSSatish Balay       N = nrow++ - 1;  \
231a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
232a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
233a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
234a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
235a30f8f8cSSatish Balay       } \
236a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
237a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
238a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
239a30f8f8cSSatish Balay       b_noinsert:; \
240a30f8f8cSSatish Balay     bilen[brow] = nrow; \
241a30f8f8cSSatish Balay }
242a30f8f8cSSatish Balay #endif
243a30f8f8cSSatish Balay 
244a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2454a2ae208SSatish Balay #undef __FUNCT__
2464a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
24787828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
248a30f8f8cSSatish Balay {
249a30f8f8cSSatish Balay   Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data;
250a30f8f8cSSatish Balay   int          ierr,i,N = m*n;
251a30f8f8cSSatish Balay   MatScalar    *vsingle;
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   PetscFunctionBegin;
254a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
255a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
25682502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
257a30f8f8cSSatish Balay     b->setvalueslen  = N;
258a30f8f8cSSatish Balay   }
259a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
260a30f8f8cSSatish Balay 
261a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
262a30f8f8cSSatish Balay     vsingle[i] = v[i];
263a30f8f8cSSatish Balay   }
264a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
265a30f8f8cSSatish Balay   PetscFunctionReturn(0);
266a30f8f8cSSatish Balay }
267a30f8f8cSSatish Balay 
2684a2ae208SSatish Balay #undef __FUNCT__
2694a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
27087828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
271a30f8f8cSSatish Balay {
272a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
273a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
274a30f8f8cSSatish Balay   MatScalar   *vsingle;
275a30f8f8cSSatish Balay 
276a30f8f8cSSatish Balay   PetscFunctionBegin;
277a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
278a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
27982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
280a30f8f8cSSatish Balay     b->setvalueslen  = N;
281a30f8f8cSSatish Balay   }
282a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
283a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
284a30f8f8cSSatish Balay     vsingle[i] = v[i];
285a30f8f8cSSatish Balay   }
286a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
287a30f8f8cSSatish Balay   PetscFunctionReturn(0);
288a30f8f8cSSatish Balay }
289a30f8f8cSSatish Balay 
2904a2ae208SSatish Balay #undef __FUNCT__
2914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
29287828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
293a30f8f8cSSatish Balay {
294a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
295a30f8f8cSSatish Balay   int         ierr,i,N = m*n;
296a30f8f8cSSatish Balay   MatScalar   *vsingle;
297a30f8f8cSSatish Balay 
298a30f8f8cSSatish Balay   PetscFunctionBegin;
29929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3004d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
301a30f8f8cSSatish Balay }
302a30f8f8cSSatish Balay 
3034a2ae208SSatish Balay #undef __FUNCT__
3044a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
30587828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
306a30f8f8cSSatish Balay {
307a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
308a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
309a30f8f8cSSatish Balay   MatScalar   *vsingle;
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   PetscFunctionBegin;
31229bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3134d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
314a30f8f8cSSatish Balay }
315a30f8f8cSSatish Balay #endif
316a30f8f8cSSatish Balay 
317a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
318a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
319a30f8f8cSSatish Balay */
3204a2ae208SSatish Balay #undef __FUNCT__
321e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
322a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
323a30f8f8cSSatish Balay {
324a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
325a30f8f8cSSatish Balay   MatScalar    value;
326b5df2d14SHong Zhang   PetscTruth   roworiented = baij->roworiented;
327a30f8f8cSSatish Balay   int          ierr,i,j,row,col;
328b5df2d14SHong Zhang   int          rstart_orig=baij->rstart_bs;
329a30f8f8cSSatish Balay   int          rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
330a30f8f8cSSatish Balay   int          cend_orig=baij->cend_bs,bs=baij->bs;
331a30f8f8cSSatish Balay 
332a30f8f8cSSatish Balay   /* Some Variables required in the macro */
333a30f8f8cSSatish Balay   Mat          A = baij->A;
334a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data;
335a30f8f8cSSatish Balay   int          *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
336a30f8f8cSSatish Balay   MatScalar    *aa=a->a;
337a30f8f8cSSatish Balay 
338a30f8f8cSSatish Balay   Mat          B = baij->B;
339a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(B)->data;
340a30f8f8cSSatish Balay   int          *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
341a30f8f8cSSatish Balay   MatScalar    *ba=b->a;
342a30f8f8cSSatish Balay 
343a30f8f8cSSatish Balay   int          *rp,ii,nrow,_i,rmax,N,brow,bcol;
344a30f8f8cSSatish Balay   int          low,high,t,ridx,cidx,bs2=a->bs2;
345a30f8f8cSSatish Balay   MatScalar    *ap,*bap;
346a30f8f8cSSatish Balay 
347a30f8f8cSSatish Balay   /* for stash */
348f65c83cfSHong Zhang   int          n_loc, *in_loc=0;
349f65c83cfSHong Zhang   MatScalar    *v_loc=0;
350a30f8f8cSSatish Balay 
351a30f8f8cSSatish Balay   PetscFunctionBegin;
352a30f8f8cSSatish Balay 
353a30f8f8cSSatish Balay   if(!baij->donotstash){
35482502324SSatish Balay     ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr);
35582502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
356a30f8f8cSSatish Balay   }
357a30f8f8cSSatish Balay 
358a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
359a30f8f8cSSatish Balay     if (im[i] < 0) continue;
360a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
361b5df2d14SHong Zhang     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
362a30f8f8cSSatish Balay #endif
363a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
364a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
365a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
366f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
367a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
368a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
369a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
370a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
371a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
372a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
373a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
374a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
375a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
376b5df2d14SHong Zhang         else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");}
377a30f8f8cSSatish Balay #endif
378a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
379a30f8f8cSSatish Balay           if (mat->was_assembled) {
380a30f8f8cSSatish Balay             if (!baij->colmap) {
381a30f8f8cSSatish Balay               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
382a30f8f8cSSatish Balay             }
383a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
384a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
38571730473SSatish Balay             col  = col - 1;
386a30f8f8cSSatish Balay #else
38771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
388a30f8f8cSSatish Balay #endif
389a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
390a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
391a30f8f8cSSatish Balay               col =  in[j];
392a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
393a30f8f8cSSatish Balay               B = baij->B;
394a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
395a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
396a30f8f8cSSatish Balay               ba=b->a;
39771730473SSatish Balay             } else col += in[j]%bs;
398a30f8f8cSSatish Balay           } else col = in[j];
399a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
400a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
401a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
402a30f8f8cSSatish Balay         }
403a30f8f8cSSatish Balay       }
404a30f8f8cSSatish Balay     } else {  /* off processor entry */
405a30f8f8cSSatish Balay       if (!baij->donotstash) {
406a30f8f8cSSatish Balay         n_loc = 0;
407a30f8f8cSSatish Balay         for (j=0; j<n; j++){
408f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
409a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
410a30f8f8cSSatish Balay           if (roworiented) {
411a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
412a30f8f8cSSatish Balay           } else {
413a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
414a30f8f8cSSatish Balay           }
415a30f8f8cSSatish Balay           n_loc++;
416a30f8f8cSSatish Balay         }
417a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
418a30f8f8cSSatish Balay       }
419a30f8f8cSSatish Balay     }
420a30f8f8cSSatish Balay   }
421a30f8f8cSSatish Balay 
422a30f8f8cSSatish Balay   if(!baij->donotstash){
423a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
424a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
425a30f8f8cSSatish Balay   }
426a30f8f8cSSatish Balay   PetscFunctionReturn(0);
427a30f8f8cSSatish Balay }
428a30f8f8cSSatish Balay 
4294a2ae208SSatish Balay #undef __FUNCT__
430e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
431e03e44c9SSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
432a30f8f8cSSatish Balay {
4330880e062SHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
4340880e062SHong Zhang   MatScalar    *value,*barray=baij->barray;
4350880e062SHong Zhang   PetscTruth   roworiented = baij->roworiented;
4360880e062SHong Zhang   int          ierr,i,j,ii,jj,row,col,rstart=baij->rstart;
4370880e062SHong Zhang   int          rend=baij->rend,cstart=baij->cstart,stepval;
4380880e062SHong Zhang   int          cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
4390880e062SHong Zhang 
440a30f8f8cSSatish Balay   PetscFunctionBegin;
4410880e062SHong Zhang   if(!barray) {
4420880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4430880e062SHong Zhang     baij->barray = barray;
4440880e062SHong Zhang   }
4450880e062SHong Zhang 
4460880e062SHong Zhang   if (roworiented) {
4470880e062SHong Zhang     stepval = (n-1)*bs;
4480880e062SHong Zhang   } else {
4490880e062SHong Zhang     stepval = (m-1)*bs;
4500880e062SHong Zhang   }
4510880e062SHong Zhang   for (i=0; i<m; i++) {
4520880e062SHong Zhang     if (im[i] < 0) continue;
4530880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4540880e062SHong Zhang     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs);
4550880e062SHong Zhang #endif
4560880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4570880e062SHong Zhang       row = im[i] - rstart;
4580880e062SHong Zhang       for (j=0; j<n; j++) {
4590880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4600880e062SHong Zhang         if ((roworiented) && (n == 1)) {
4610880e062SHong Zhang           barray = v + i*bs2;
4620880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
4630880e062SHong Zhang           barray = v + j*bs2;
4640880e062SHong Zhang         } else { /* Here a copy is required */
4650880e062SHong Zhang           if (roworiented) {
4660880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4670880e062SHong Zhang           } else {
4680880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4690880e062SHong Zhang           }
4700880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4710880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4720880e062SHong Zhang               *barray++  = *value++;
4730880e062SHong Zhang             }
4740880e062SHong Zhang           }
4750880e062SHong Zhang           barray -=bs2;
4760880e062SHong Zhang         }
4770880e062SHong Zhang 
4780880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4790880e062SHong Zhang           col  = in[j] - cstart;
4800880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4810880e062SHong Zhang         }
4820880e062SHong Zhang         else if (in[j] < 0) continue;
4830880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4840880e062SHong Zhang         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs);}
4850880e062SHong Zhang #endif
4860880e062SHong Zhang         else {
4870880e062SHong Zhang           if (mat->was_assembled) {
4880880e062SHong Zhang             if (!baij->colmap) {
4890880e062SHong Zhang               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
4900880e062SHong Zhang             }
4910880e062SHong Zhang 
4920880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4930880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4940880e062SHong Zhang             { int data;
4950880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4960880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4970880e062SHong Zhang             }
4980880e062SHong Zhang #else
4990880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
5000880e062SHong Zhang #endif
5010880e062SHong Zhang #endif
5020880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
5030880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5040880e062SHong Zhang             col  = (col - 1)/bs;
5050880e062SHong Zhang #else
5060880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5070880e062SHong Zhang #endif
5080880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
5090880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5100880e062SHong Zhang               col =  in[j];
5110880e062SHong Zhang             }
5120880e062SHong Zhang           }
5130880e062SHong Zhang           else col = in[j];
5140880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
5150880e062SHong Zhang         }
5160880e062SHong Zhang       }
5170880e062SHong Zhang     } else {
5180880e062SHong Zhang       if (!baij->donotstash) {
5190880e062SHong Zhang         if (roworiented) {
5200880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5210880e062SHong Zhang         } else {
5220880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5230880e062SHong Zhang         }
5240880e062SHong Zhang       }
5250880e062SHong Zhang     }
5260880e062SHong Zhang   }
5270880e062SHong Zhang   PetscFunctionReturn(0);
528a30f8f8cSSatish Balay }
529a30f8f8cSSatish Balay 
530a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
531a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
532a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
533a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
5344a2ae208SSatish Balay #undef __FUNCT__
5354a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
536a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
537a30f8f8cSSatish Balay {
538a30f8f8cSSatish Balay   PetscFunctionBegin;
53929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
54096e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
541a30f8f8cSSatish Balay }
542a30f8f8cSSatish Balay 
5434a2ae208SSatish Balay #undef __FUNCT__
5444a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
545a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
546a30f8f8cSSatish Balay {
547a30f8f8cSSatish Balay   PetscFunctionBegin;
54829bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
54996e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
550a30f8f8cSSatish Balay }
551a30f8f8cSSatish Balay 
5524a2ae208SSatish Balay #undef __FUNCT__
5534a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
55487828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v)
555a30f8f8cSSatish Balay {
556f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
557a30f8f8cSSatish Balay   int          bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
558a30f8f8cSSatish Balay   int          bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
559a30f8f8cSSatish Balay 
560a30f8f8cSSatish Balay   PetscFunctionBegin;
561a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
56229bbc08cSBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
563b5df2d14SHong Zhang     if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
564a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
565a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
566a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
56729bbc08cSBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column");
568b5df2d14SHong Zhang         if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
569a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
570a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
571c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
572a30f8f8cSSatish Balay         } else {
573a30f8f8cSSatish Balay           if (!baij->colmap) {
574a30f8f8cSSatish Balay             ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
575a30f8f8cSSatish Balay           }
576a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
577a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
578a30f8f8cSSatish Balay           data --;
579a30f8f8cSSatish Balay #else
580a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
581a30f8f8cSSatish Balay #endif
582a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
583a30f8f8cSSatish Balay           else {
584a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
585c8407628SSatish Balay             ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
586a30f8f8cSSatish Balay           }
587a30f8f8cSSatish Balay         }
588a30f8f8cSSatish Balay       }
589a30f8f8cSSatish Balay     } else {
59029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
591a30f8f8cSSatish Balay     }
592a30f8f8cSSatish Balay   }
593a30f8f8cSSatish Balay  PetscFunctionReturn(0);
594a30f8f8cSSatish Balay }
595a30f8f8cSSatish Balay 
5964a2ae208SSatish Balay #undef __FUNCT__
5974a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
598a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
599a30f8f8cSSatish Balay {
600a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
601bc0ba53dSHong Zhang   /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */
602bc0ba53dSHong Zhang   /* Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ*)baij->B->data; */
603a30f8f8cSSatish Balay   int        ierr;
604a30f8f8cSSatish Balay   PetscReal  sum[2],*lnorm2;
605a30f8f8cSSatish Balay 
606a30f8f8cSSatish Balay   PetscFunctionBegin;
607a30f8f8cSSatish Balay   if (baij->size == 1) {
608a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
609a30f8f8cSSatish Balay   } else {
610a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
611f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
612a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
613a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
614a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
615a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
616a30f8f8cSSatish Balay       /*
61756faa61eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
61856faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]);
619a30f8f8cSSatish Balay       */
620d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
621a30f8f8cSSatish Balay       /*
62256faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]);
62356faa61eSBarry Smith       PetscSynchronizedFlush(mat->comm); */
624a30f8f8cSSatish Balay 
625a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
626a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
627a30f8f8cSSatish Balay     } else {
62829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
629a30f8f8cSSatish Balay     }
630a30f8f8cSSatish Balay   }
631a30f8f8cSSatish Balay   PetscFunctionReturn(0);
632a30f8f8cSSatish Balay }
633a30f8f8cSSatish Balay 
634a30f8f8cSSatish Balay /*
635a30f8f8cSSatish Balay   Creates the hash table, and sets the table
636a30f8f8cSSatish Balay   This table is created only once.
637a30f8f8cSSatish Balay   If new entried need to be added to the matrix
638a30f8f8cSSatish Balay   then the hash table has to be destroyed and
639a30f8f8cSSatish Balay   recreated.
640a30f8f8cSSatish Balay */
6414a2ae208SSatish Balay #undef __FUNCT__
6424a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
643a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
644a30f8f8cSSatish Balay {
645a30f8f8cSSatish Balay   PetscFunctionBegin;
64629bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
64796e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
648a30f8f8cSSatish Balay }
649a30f8f8cSSatish Balay 
6504a2ae208SSatish Balay #undef __FUNCT__
6514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
652a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
653a30f8f8cSSatish Balay {
654a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
655a30f8f8cSSatish Balay   int         ierr,nstash,reallocs;
656a30f8f8cSSatish Balay   InsertMode  addv;
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   PetscFunctionBegin;
659a30f8f8cSSatish Balay   if (baij->donotstash) {
660a30f8f8cSSatish Balay     PetscFunctionReturn(0);
661a30f8f8cSSatish Balay   }
662a30f8f8cSSatish Balay 
663a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
664a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
665a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
66629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
667a30f8f8cSSatish Balay   }
668a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
669a30f8f8cSSatish Balay 
670a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
671a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
672a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
673b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs);
674a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
675b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
676a30f8f8cSSatish Balay   PetscFunctionReturn(0);
677a30f8f8cSSatish Balay }
678a30f8f8cSSatish Balay 
6794a2ae208SSatish Balay #undef __FUNCT__
6804a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
681a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
682a30f8f8cSSatish Balay {
683a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data;
684a30f8f8cSSatish Balay   Mat_SeqSBAIJ  *a=(Mat_SeqSBAIJ*)baij->A->data;
685a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b=(Mat_SeqBAIJ*)baij->B->data;
686a30f8f8cSSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
687a30f8f8cSSatish Balay   int         *row,*col,other_disassembled;
688a30f8f8cSSatish Balay   PetscTruth  r1,r2,r3;
689a30f8f8cSSatish Balay   MatScalar   *val;
690a30f8f8cSSatish Balay   InsertMode  addv = mat->insertmode;
691*27f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS)
6925222a1afSHong Zhang   PetscTruth  flag;
6935222a1afSHong Zhang #endif
694a30f8f8cSSatish Balay 
695a30f8f8cSSatish Balay   PetscFunctionBegin;
696a30f8f8cSSatish Balay 
697a30f8f8cSSatish Balay   if (!baij->donotstash) {
698a30f8f8cSSatish Balay     while (1) {
699a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
700a30f8f8cSSatish Balay       /*
70156faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg);
70256faa61eSBarry Smith       PetscSynchronizedFlush(mat->comm);
703a30f8f8cSSatish Balay       */
704a30f8f8cSSatish Balay       if (!flg) break;
705a30f8f8cSSatish Balay 
706a30f8f8cSSatish Balay       for (i=0; i<n;) {
707a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
708a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
709a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
710a30f8f8cSSatish Balay         else       ncols = n-i;
711a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
712a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
713a30f8f8cSSatish Balay         i = j;
714a30f8f8cSSatish Balay       }
715a30f8f8cSSatish Balay     }
716a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
717a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
718a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
719a30f8f8cSSatish Balay        restore the original flags */
720a30f8f8cSSatish Balay     r1 = baij->roworiented;
721a30f8f8cSSatish Balay     r2 = a->roworiented;
722a30f8f8cSSatish Balay     r3 = b->roworiented;
723a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
724a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
725a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
726a30f8f8cSSatish Balay     while (1) {
727a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
728a30f8f8cSSatish Balay       if (!flg) break;
729a30f8f8cSSatish Balay 
730a30f8f8cSSatish Balay       for (i=0; i<n;) {
731a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
732a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
733a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
734a30f8f8cSSatish Balay         else       ncols = n-i;
735a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
736a30f8f8cSSatish Balay         i = j;
737a30f8f8cSSatish Balay       }
738a30f8f8cSSatish Balay     }
739a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
740a30f8f8cSSatish Balay     baij->roworiented = r1;
741a30f8f8cSSatish Balay     a->roworiented    = r2;
742a30f8f8cSSatish Balay     b->roworiented    = r3;
743a30f8f8cSSatish Balay   }
744a30f8f8cSSatish Balay 
745a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
746a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
747a30f8f8cSSatish Balay 
748a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
749a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
750a30f8f8cSSatish Balay   /*
751a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
752a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
753a30f8f8cSSatish Balay   */
754a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
755a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
756a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
757c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
758a30f8f8cSSatish Balay     }
759a30f8f8cSSatish Balay   }
760a30f8f8cSSatish Balay 
761a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
76240781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
763a30f8f8cSSatish Balay   }
764a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
765a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
766a30f8f8cSSatish Balay 
767a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
768a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
769f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
770a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
771a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
772a30f8f8cSSatish Balay   }
773a30f8f8cSSatish Balay #endif
774a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
775c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
776a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
777a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
778a30f8f8cSSatish Balay   }
779a30f8f8cSSatish Balay 
780a30f8f8cSSatish Balay   if (baij->rowvalues) {
781a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
782a30f8f8cSSatish Balay     baij->rowvalues = 0;
783a30f8f8cSSatish Balay   }
7845222a1afSHong Zhang 
7855222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES)
7862c535e4dSHong Zhang   ierr = PetscOptionsHasName(mat->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
7875222a1afSHong Zhang   if (flag) { ierr = MatUseSpooles_MPISBAIJ(mat);CHKERRQ(ierr); }
7885222a1afSHong Zhang #endif
789*27f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS)
790*27f1aa60SHong Zhang   ierr = PetscOptionsHasName(mat->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr);
791*27f1aa60SHong Zhang   if (flag) { ierr = MatUseMUMPS_MPIAIJ(mat);CHKERRQ(ierr); }
792*27f1aa60SHong Zhang #endif
793a30f8f8cSSatish Balay   PetscFunctionReturn(0);
794a30f8f8cSSatish Balay }
795a30f8f8cSSatish Balay 
7964a2ae208SSatish Balay #undef __FUNCT__
7974a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
798b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
799a30f8f8cSSatish Balay {
800a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
801fb9695e5SSatish Balay   int               ierr,bs = baij->bs,size = baij->size,rank = baij->rank;
802a30f8f8cSSatish Balay   PetscTruth        isascii,isdraw;
803b0a32e0cSBarry Smith   PetscViewer       sviewer;
804f3ef73ceSBarry Smith   PetscViewerFormat format;
805a30f8f8cSSatish Balay 
806a30f8f8cSSatish Balay   PetscFunctionBegin;
807b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
808fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
809a30f8f8cSSatish Balay   if (isascii) {
810b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
811456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
812a30f8f8cSSatish Balay       MatInfo info;
813a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
814a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
815b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
816b5df2d14SHong Zhang               rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
817a30f8f8cSSatish Balay               baij->bs,(int)info.memory);CHKERRQ(ierr);
818a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
819b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
820a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
821b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
822b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
823a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
824a30f8f8cSSatish Balay       PetscFunctionReturn(0);
825fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
826b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
827a30f8f8cSSatish Balay       PetscFunctionReturn(0);
828a30f8f8cSSatish Balay     }
829a30f8f8cSSatish Balay   }
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay   if (isdraw) {
832b0a32e0cSBarry Smith     PetscDraw       draw;
833a30f8f8cSSatish Balay     PetscTruth isnull;
834b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
835b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
836a30f8f8cSSatish Balay   }
837a30f8f8cSSatish Balay 
838a30f8f8cSSatish Balay   if (size == 1) {
839e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
840a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
841a30f8f8cSSatish Balay   } else {
842a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
843a30f8f8cSSatish Balay     Mat         A;
84465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84565d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
846b5df2d14SHong Zhang     int         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
847a30f8f8cSSatish Balay     MatScalar   *a;
848a30f8f8cSSatish Balay 
849a30f8f8cSSatish Balay     if (!rank) {
850bc0ba53dSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
851a30f8f8cSSatish Balay     } else {
852f65c83cfSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
853a30f8f8cSSatish Balay     }
854b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
855a30f8f8cSSatish Balay 
856a30f8f8cSSatish Balay     /* copy over the A part */
85765d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
858a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
85982502324SSatish Balay     ierr  = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
860a30f8f8cSSatish Balay 
861a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
862a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
863a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
864a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
865a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
866a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
867a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
868a30f8f8cSSatish Balay           col++; a += bs;
869a30f8f8cSSatish Balay         }
870a30f8f8cSSatish Balay       }
871a30f8f8cSSatish Balay     }
872a30f8f8cSSatish Balay     /* copy over the B part */
87365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
87465d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
875a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
876a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
877a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
878a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
879a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
880a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
881a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
882a30f8f8cSSatish Balay           col++; a += bs;
883a30f8f8cSSatish Balay         }
884a30f8f8cSSatish Balay       }
885a30f8f8cSSatish Balay     }
886a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
887a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
888a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
889a30f8f8cSSatish Balay     /*
890a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
891b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
892a30f8f8cSSatish Balay     */
893b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
89465d70643SHong Zhang     if (!rank) {
895e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
896a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
897a30f8f8cSSatish Balay     }
898b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
899a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
900a30f8f8cSSatish Balay   }
901a30f8f8cSSatish Balay   PetscFunctionReturn(0);
902a30f8f8cSSatish Balay }
903a30f8f8cSSatish Balay 
9044a2ae208SSatish Balay #undef __FUNCT__
9054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
906b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
907a30f8f8cSSatish Balay {
908a30f8f8cSSatish Balay   int        ierr;
909a30f8f8cSSatish Balay   PetscTruth isascii,isdraw,issocket,isbinary;
910a30f8f8cSSatish Balay 
911a30f8f8cSSatish Balay   PetscFunctionBegin;
912b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
913fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
914b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
915fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
916a30f8f8cSSatish Balay   if (isascii || isdraw || issocket || isbinary) {
917a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
918a30f8f8cSSatish Balay   } else {
91929bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
920a30f8f8cSSatish Balay   }
921a30f8f8cSSatish Balay   PetscFunctionReturn(0);
922a30f8f8cSSatish Balay }
923a30f8f8cSSatish Balay 
9244a2ae208SSatish Balay #undef __FUNCT__
9254a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
926a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat)
927a30f8f8cSSatish Balay {
928a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
929a30f8f8cSSatish Balay   int         ierr;
930a30f8f8cSSatish Balay 
931a30f8f8cSSatish Balay   PetscFunctionBegin;
932a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
933b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N);
934a30f8f8cSSatish Balay #endif
935a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
936a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
937a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
938a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
939a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
940a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
941a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
942a30f8f8cSSatish Balay #else
943a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
944a30f8f8cSSatish Balay #endif
945a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
946a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
947a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
94840781036SHong Zhang   if (baij->slvec0) {
94940781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
95040781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
95140781036SHong Zhang   }
95240781036SHong Zhang   if (baij->slvec1) {
95340781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
95440781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
95540781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
95640781036SHong Zhang   }
95740781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
958a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
959a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
960a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
961a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
962a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
963a30f8f8cSSatish Balay #endif
964a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
965a30f8f8cSSatish Balay   PetscFunctionReturn(0);
966a30f8f8cSSatish Balay }
967a30f8f8cSSatish Balay 
9684a2ae208SSatish Balay #undef __FUNCT__
969a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
970a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
971a9d4b620SHong Zhang {
972a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
9734024bf32SHong Zhang   int         ierr,nt,mbs=a->mbs,bs=a->bs;
974a9d4b620SHong Zhang   PetscScalar *x,*from,zero=0.0;
975a9d4b620SHong Zhang 
976a9d4b620SHong Zhang   PetscFunctionBegin;
977a9d4b620SHong Zhang   /*
97856faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," _1comm is called ...\n");
97956faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
980a9d4b620SHong Zhang   */
981a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
982a9d4b620SHong Zhang   if (nt != A->n) {
983a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
984a9d4b620SHong Zhang   }
985a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
986a9d4b620SHong Zhang   if (nt != A->m) {
987a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
988a9d4b620SHong Zhang   }
989a9d4b620SHong Zhang 
990a9d4b620SHong Zhang   /* diagonal part */
991a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
992a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
993a9d4b620SHong Zhang 
994a9d4b620SHong Zhang   /* subdiagonal part */
995a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
996a9d4b620SHong Zhang 
997a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
998a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
999a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1000a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1001a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1002a9d4b620SHong Zhang 
1003a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1004a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1005a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1006a9d4b620SHong Zhang 
1007a9d4b620SHong Zhang   /* supperdiagonal part */
1008a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1009a9d4b620SHong Zhang 
1010a9d4b620SHong Zhang   PetscFunctionReturn(0);
1011a9d4b620SHong Zhang }
1012a9d4b620SHong Zhang 
1013a9d4b620SHong Zhang #undef __FUNCT__
101440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
101540781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1016a30f8f8cSSatish Balay {
1017a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1018a30f8f8cSSatish Balay   int         ierr,nt;
1019a30f8f8cSSatish Balay 
1020a30f8f8cSSatish Balay   PetscFunctionBegin;
1021a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1022b5df2d14SHong Zhang   if (nt != A->n) {
102329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1024a30f8f8cSSatish Balay   }
1025a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1026b5df2d14SHong Zhang   if (nt != A->m) {
102729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1028a30f8f8cSSatish Balay   }
102965d70643SHong Zhang 
1030b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1031b941877fSHong Zhang   /* do diagonal part */
1032b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1033b941877fSHong Zhang   /* do supperdiagonal part */
1034b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1035b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1036b941877fSHong Zhang   /* do subdiagonal part */
1037b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1038b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1039b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
104065d70643SHong Zhang 
1041a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1042a30f8f8cSSatish Balay }
1043a30f8f8cSSatish Balay 
10444a2ae208SSatish Balay #undef __FUNCT__
10454a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1046a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1047a30f8f8cSSatish Balay {
1048de8b6608SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1049a9d4b620SHong Zhang   int          ierr,mbs=a->mbs,bs=a->bs;
1050a9d4b620SHong Zhang   PetscScalar  *x,*from,zero=0.0;
1051a9d4b620SHong Zhang 
1052a9d4b620SHong Zhang   PetscFunctionBegin;
1053a9d4b620SHong Zhang   /*
105456faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
105556faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
1056a9d4b620SHong Zhang   */
1057a9d4b620SHong Zhang   /* diagonal part */
1058a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1059a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1060a9d4b620SHong Zhang 
1061a9d4b620SHong Zhang   /* subdiagonal part */
1062a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1063a9d4b620SHong Zhang 
1064a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
1065a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1066a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1067a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1068a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1069a9d4b620SHong Zhang 
1070a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1071a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1072a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1073a9d4b620SHong Zhang 
1074a9d4b620SHong Zhang   /* supperdiagonal part */
1075a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1076a9d4b620SHong Zhang 
1077a9d4b620SHong Zhang   PetscFunctionReturn(0);
1078a9d4b620SHong Zhang }
1079a9d4b620SHong Zhang 
1080a9d4b620SHong Zhang #undef __FUNCT__
1081a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1082a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1083a9d4b620SHong Zhang {
1084a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1085aa482183SHong Zhang   int        ierr;
1086a30f8f8cSSatish Balay 
1087a30f8f8cSSatish Balay   PetscFunctionBegin;
1088b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1089b941877fSHong Zhang   /* do diagonal part */
1090b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1091b941877fSHong Zhang   /* do supperdiagonal part */
1092b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1093de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1094de8b6608SHong Zhang 
1095b941877fSHong Zhang   /* do subdiagonal part */
1096a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1097a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1098a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1099aa482183SHong Zhang 
1100a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1101a30f8f8cSSatish Balay }
1102a30f8f8cSSatish Balay 
11034a2ae208SSatish Balay #undef __FUNCT__
11044a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1105a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1106a30f8f8cSSatish Balay {
1107a30f8f8cSSatish Balay   PetscFunctionBegin;
110829bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMult().");
110996e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1110a30f8f8cSSatish Balay }
1111a30f8f8cSSatish Balay 
11124a2ae208SSatish Balay #undef __FUNCT__
11134a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1114a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1115a30f8f8cSSatish Balay {
1116a30f8f8cSSatish Balay   PetscFunctionBegin;
111729bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMultAdd().");
111896e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1119a30f8f8cSSatish Balay }
1120a30f8f8cSSatish Balay 
1121a30f8f8cSSatish Balay /*
1122a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1123a30f8f8cSSatish Balay    diagonal block
1124a30f8f8cSSatish Balay */
11254a2ae208SSatish Balay #undef __FUNCT__
11264a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1127a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1128a30f8f8cSSatish Balay {
1129a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1130a30f8f8cSSatish Balay   int         ierr;
1131a30f8f8cSSatish Balay 
1132a30f8f8cSSatish Balay   PetscFunctionBegin;
113329bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1134a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1135a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1136a30f8f8cSSatish Balay }
1137a30f8f8cSSatish Balay 
11384a2ae208SSatish Balay #undef __FUNCT__
11394a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
114087828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A)
1141a30f8f8cSSatish Balay {
1142a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1143a30f8f8cSSatish Balay   int         ierr;
1144a30f8f8cSSatish Balay 
1145a30f8f8cSSatish Balay   PetscFunctionBegin;
1146a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1147a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1148a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1149a30f8f8cSSatish Balay }
1150a30f8f8cSSatish Balay 
11514a2ae208SSatish Balay #undef __FUNCT__
11524a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
115387828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
1154a30f8f8cSSatish Balay {
1155a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
115687828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1157a30f8f8cSSatish Balay   int            bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB;
1158a30f8f8cSSatish Balay   int            nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1159a30f8f8cSSatish Balay   int            *cmap,*idx_p,cstart = mat->cstart;
1160a30f8f8cSSatish Balay 
1161a30f8f8cSSatish Balay   PetscFunctionBegin;
116229bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1163a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1164a30f8f8cSSatish Balay 
1165a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1166a30f8f8cSSatish Balay     /*
1167a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1168a30f8f8cSSatish Balay     */
1169a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1170a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1171a30f8f8cSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1172a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1173a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1174a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1175a30f8f8cSSatish Balay     }
117687828ca2SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1177a30f8f8cSSatish Balay     mat->rowindices = (int*)(mat->rowvalues + max*bs2);
1178a30f8f8cSSatish Balay   }
1179a30f8f8cSSatish Balay 
118029bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1181a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1182a30f8f8cSSatish Balay 
1183a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1184a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1185a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1186a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1187a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1188a30f8f8cSSatish Balay   nztot = nzA + nzB;
1189a30f8f8cSSatish Balay 
1190a30f8f8cSSatish Balay   cmap  = mat->garray;
1191a30f8f8cSSatish Balay   if (v  || idx) {
1192a30f8f8cSSatish Balay     if (nztot) {
1193a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1194a30f8f8cSSatish Balay       int imark = -1;
1195a30f8f8cSSatish Balay       if (v) {
1196a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1197a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1198a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1199a30f8f8cSSatish Balay           else break;
1200a30f8f8cSSatish Balay         }
1201a30f8f8cSSatish Balay         imark = i;
1202a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1203a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1204a30f8f8cSSatish Balay       }
1205a30f8f8cSSatish Balay       if (idx) {
1206a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1207a30f8f8cSSatish Balay         if (imark > -1) {
1208a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1209a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1210a30f8f8cSSatish Balay           }
1211a30f8f8cSSatish Balay         } else {
1212a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1213a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1214a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1215a30f8f8cSSatish Balay             else break;
1216a30f8f8cSSatish Balay           }
1217a30f8f8cSSatish Balay           imark = i;
1218a30f8f8cSSatish Balay         }
1219a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1220a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1221a30f8f8cSSatish Balay       }
1222a30f8f8cSSatish Balay     } else {
1223a30f8f8cSSatish Balay       if (idx) *idx = 0;
1224a30f8f8cSSatish Balay       if (v)   *v   = 0;
1225a30f8f8cSSatish Balay     }
1226a30f8f8cSSatish Balay   }
1227a30f8f8cSSatish Balay   *nz = nztot;
1228a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1229a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1230a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1231a30f8f8cSSatish Balay }
1232a30f8f8cSSatish Balay 
12334a2ae208SSatish Balay #undef __FUNCT__
12344a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
123587828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
1236a30f8f8cSSatish Balay {
1237a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1238a30f8f8cSSatish Balay 
1239a30f8f8cSSatish Balay   PetscFunctionBegin;
1240a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
124129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1242a30f8f8cSSatish Balay   }
1243a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1244a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1245a30f8f8cSSatish Balay }
1246a30f8f8cSSatish Balay 
12474a2ae208SSatish Balay #undef __FUNCT__
12484a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ"
1249a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs)
1250a30f8f8cSSatish Balay {
1251a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1252a30f8f8cSSatish Balay 
1253a30f8f8cSSatish Balay   PetscFunctionBegin;
1254a30f8f8cSSatish Balay   *bs = baij->bs;
1255a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1256a30f8f8cSSatish Balay }
1257a30f8f8cSSatish Balay 
12584a2ae208SSatish Balay #undef __FUNCT__
12594a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1260a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A)
1261a30f8f8cSSatish Balay {
1262a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data;
1263a30f8f8cSSatish Balay   int         ierr;
1264a30f8f8cSSatish Balay 
1265a30f8f8cSSatish Balay   PetscFunctionBegin;
1266a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1267a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1268a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1269a30f8f8cSSatish Balay }
1270a30f8f8cSSatish Balay 
12714a2ae208SSatish Balay #undef __FUNCT__
12724a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1273a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1274a30f8f8cSSatish Balay {
1275a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data;
1276a30f8f8cSSatish Balay   Mat         A = a->A,B = a->B;
1277a30f8f8cSSatish Balay   int         ierr;
1278a30f8f8cSSatish Balay   PetscReal   isend[5],irecv[5];
1279a30f8f8cSSatish Balay 
1280a30f8f8cSSatish Balay   PetscFunctionBegin;
1281f6275e2eSBarry Smith   info->block_size     = (PetscReal)a->bs;
1282a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1283a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1284a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1285a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1286a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1287a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1288a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1289a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1290a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1291a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1292a30f8f8cSSatish Balay     info->memory       = isend[3];
1293a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1294a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1295d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1296a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1297a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1298a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1299a30f8f8cSSatish Balay     info->memory       = irecv[3];
1300a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1301a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1302d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1303a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1304a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1305a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1306a30f8f8cSSatish Balay     info->memory       = irecv[3];
1307a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1308a30f8f8cSSatish Balay   } else {
130929bbc08cSBarry Smith     SETERRQ1(1,"Unknown MatInfoType argument %d",flag);
1310a30f8f8cSSatish Balay   }
1311f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1312f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1313f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1314f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1315a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1316a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1317a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1318a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1319a30f8f8cSSatish Balay }
1320a30f8f8cSSatish Balay 
13214a2ae208SSatish Balay #undef __FUNCT__
13224a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1323a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op)
1324a30f8f8cSSatish Balay {
1325a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1326a30f8f8cSSatish Balay   int         ierr;
1327a30f8f8cSSatish Balay 
1328a30f8f8cSSatish Balay   PetscFunctionBegin;
1329e98b92d7SKris Buschelman   switch (op) {
1330e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1331e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1332e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1333e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1334e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1335e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1336e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1337a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1338a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1339e98b92d7SKris Buschelman     break;
1340e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1341a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1342a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1343a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1344e98b92d7SKris Buschelman     break;
1345e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1346e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1347e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1348b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1349e98b92d7SKris Buschelman     break;
1350e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1351a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1352a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1353a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1354e98b92d7SKris Buschelman     break;
1355e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1356a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1357e98b92d7SKris Buschelman     break;
1358e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
135929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1360e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1361a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1362e98b92d7SKris Buschelman     break;
1363e98b92d7SKris Buschelman   default:
136429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1365a30f8f8cSSatish Balay   }
1366a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1367a30f8f8cSSatish Balay }
1368a30f8f8cSSatish Balay 
13694a2ae208SSatish Balay #undef __FUNCT__
13708115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
13718115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B)
1372a30f8f8cSSatish Balay {
13738115998fSBarry Smith   int ierr;
1374a30f8f8cSSatish Balay   PetscFunctionBegin;
1375999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13768115998fSBarry Smith   PetscFunctionReturn(0);
1377a30f8f8cSSatish Balay }
1378a30f8f8cSSatish Balay 
13794a2ae208SSatish Balay #undef __FUNCT__
13804a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1381a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1382a30f8f8cSSatish Balay {
1383a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1384a30f8f8cSSatish Balay   Mat         a = baij->A,b = baij->B;
1385a30f8f8cSSatish Balay   int         ierr,s1,s2,s3;
1386a30f8f8cSSatish Balay 
1387a30f8f8cSSatish Balay   PetscFunctionBegin;
1388a30f8f8cSSatish Balay   if (ll != rr) {
138929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1390a30f8f8cSSatish Balay   }
1391a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1392a30f8f8cSSatish Balay   if (rr) {
1393a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
139429bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1395a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1396a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1397a30f8f8cSSatish Balay     /*} if (ll) { */
1398a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
139929bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1400a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1401a30f8f8cSSatish Balay     /* } */
1402a30f8f8cSSatish Balay   /* scale  the diagonal block */
1403a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1404a30f8f8cSSatish Balay 
1405a30f8f8cSSatish Balay   /* if (rr) { */
1406a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1407a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1408a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1409a30f8f8cSSatish Balay   }
1410a30f8f8cSSatish Balay 
1411a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1412a30f8f8cSSatish Balay }
1413a30f8f8cSSatish Balay 
14144a2ae208SSatish Balay #undef __FUNCT__
14154a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
141687828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag)
1417a30f8f8cSSatish Balay {
1418a30f8f8cSSatish Balay   PetscFunctionBegin;
1419c0f24835SHong Zhang   SETERRQ(PETSC_ERR_SUP,"No support for this function yet");
1420a30f8f8cSSatish Balay }
1421a30f8f8cSSatish Balay 
14224a2ae208SSatish Balay #undef __FUNCT__
14234a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1424a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A)
1425a30f8f8cSSatish Balay {
1426a30f8f8cSSatish Balay   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1427a30f8f8cSSatish Balay   MPI_Comm    comm = A->comm;
1428a30f8f8cSSatish Balay   static int  called = 0;
1429a30f8f8cSSatish Balay   int         ierr;
1430a30f8f8cSSatish Balay 
1431a30f8f8cSSatish Balay   PetscFunctionBegin;
1432a30f8f8cSSatish Balay   if (!a->rank) {
1433a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1434a30f8f8cSSatish Balay   }
1435a30f8f8cSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1436a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1437a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1438a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1439a30f8f8cSSatish Balay }
1440a30f8f8cSSatish Balay 
14414a2ae208SSatish Balay #undef __FUNCT__
14424a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1443a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A)
1444a30f8f8cSSatish Balay {
1445f3566a2aSHong Zhang   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1446a30f8f8cSSatish Balay   int         ierr;
1447a30f8f8cSSatish Balay 
1448a30f8f8cSSatish Balay   PetscFunctionBegin;
1449a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1450a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1451a30f8f8cSSatish Balay }
1452a30f8f8cSSatish Balay 
1453a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1454a30f8f8cSSatish Balay 
14554a2ae208SSatish Balay #undef __FUNCT__
14564a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1457a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1458a30f8f8cSSatish Balay {
1459a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1460a30f8f8cSSatish Balay   Mat         a,b,c,d;
1461a30f8f8cSSatish Balay   PetscTruth  flg;
1462a30f8f8cSSatish Balay   int         ierr;
1463a30f8f8cSSatish Balay 
1464a30f8f8cSSatish Balay   PetscFunctionBegin;
1465b5df2d14SHong Zhang   ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr);
1466b5df2d14SHong Zhang   if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type");
1467a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1468a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1469a30f8f8cSSatish Balay 
1470a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1471a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1472a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1473a30f8f8cSSatish Balay   }
1474a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1475a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1476a30f8f8cSSatish Balay }
1477a30f8f8cSSatish Balay 
14784a2ae208SSatish Balay #undef __FUNCT__
14794a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1480273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A)
1481273d9f13SBarry Smith {
1482273d9f13SBarry Smith   int        ierr;
1483273d9f13SBarry Smith 
1484273d9f13SBarry Smith   PetscFunctionBegin;
1485273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1486273d9f13SBarry Smith   PetscFunctionReturn(0);
1487273d9f13SBarry Smith }
1488a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1489a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1490a30f8f8cSSatish Balay   MatSetValues_MPISBAIJ,
1491a30f8f8cSSatish Balay   MatGetRow_MPISBAIJ,
1492a30f8f8cSSatish Balay   MatRestoreRow_MPISBAIJ,
1493a9d4b620SHong Zhang   MatMult_MPISBAIJ,
1494a30f8f8cSSatish Balay   MatMultAdd_MPISBAIJ,
1495a30f8f8cSSatish Balay   MatMultTranspose_MPISBAIJ,
1496a30f8f8cSSatish Balay   MatMultTransposeAdd_MPISBAIJ,
1497a30f8f8cSSatish Balay   0,
1498a30f8f8cSSatish Balay   0,
1499a30f8f8cSSatish Balay   0,
1500a30f8f8cSSatish Balay   0,
1501a30f8f8cSSatish Balay   0,
1502a30f8f8cSSatish Balay   0,
15032798e883SHong Zhang   MatRelax_MPISBAIJ,
1504a30f8f8cSSatish Balay   MatTranspose_MPISBAIJ,
1505a30f8f8cSSatish Balay   MatGetInfo_MPISBAIJ,
1506a30f8f8cSSatish Balay   MatEqual_MPISBAIJ,
1507a30f8f8cSSatish Balay   MatGetDiagonal_MPISBAIJ,
1508a30f8f8cSSatish Balay   MatDiagonalScale_MPISBAIJ,
1509a30f8f8cSSatish Balay   MatNorm_MPISBAIJ,
1510a30f8f8cSSatish Balay   MatAssemblyBegin_MPISBAIJ,
1511a30f8f8cSSatish Balay   MatAssemblyEnd_MPISBAIJ,
1512a30f8f8cSSatish Balay   0,
1513a30f8f8cSSatish Balay   MatSetOption_MPISBAIJ,
1514a30f8f8cSSatish Balay   MatZeroEntries_MPISBAIJ,
1515a30f8f8cSSatish Balay   MatZeroRows_MPISBAIJ,
1516a30f8f8cSSatish Balay   0,
1517a30f8f8cSSatish Balay   0,
1518a30f8f8cSSatish Balay   0,
1519a30f8f8cSSatish Balay   0,
1520273d9f13SBarry Smith   MatSetUpPreallocation_MPISBAIJ,
1521b5df2d14SHong Zhang   0,
1522a30f8f8cSSatish Balay   0,
1523a30f8f8cSSatish Balay   0,
1524a30f8f8cSSatish Balay   0,
1525a30f8f8cSSatish Balay   MatDuplicate_MPISBAIJ,
1526a30f8f8cSSatish Balay   0,
1527a30f8f8cSSatish Balay   0,
1528a30f8f8cSSatish Balay   0,
1529a30f8f8cSSatish Balay   0,
1530a30f8f8cSSatish Balay   0,
15310b15b8e2SSatish Balay   0,
15320b15b8e2SSatish Balay   0,
1533a30f8f8cSSatish Balay   MatGetValues_MPISBAIJ,
1534a30f8f8cSSatish Balay   0,
1535a30f8f8cSSatish Balay   MatPrintHelp_MPISBAIJ,
1536a30f8f8cSSatish Balay   MatScale_MPISBAIJ,
1537a30f8f8cSSatish Balay   0,
1538a30f8f8cSSatish Balay   0,
1539a30f8f8cSSatish Balay   0,
1540a30f8f8cSSatish Balay   MatGetBlockSize_MPISBAIJ,
1541a30f8f8cSSatish Balay   0,
1542a30f8f8cSSatish Balay   0,
1543a30f8f8cSSatish Balay   0,
1544a30f8f8cSSatish Balay   0,
1545a30f8f8cSSatish Balay   0,
1546a30f8f8cSSatish Balay   0,
1547a30f8f8cSSatish Balay   MatSetUnfactored_MPISBAIJ,
1548a30f8f8cSSatish Balay   0,
1549a30f8f8cSSatish Balay   MatSetValuesBlocked_MPISBAIJ,
1550a30f8f8cSSatish Balay   0,
1551a30f8f8cSSatish Balay   0,
1552a30f8f8cSSatish Balay   0,
15538a124369SBarry Smith   MatGetPetscMaps_Petsc,
155424d5174aSHong Zhang   0,
155524d5174aSHong Zhang   0,
155624d5174aSHong Zhang   0,
155724d5174aSHong Zhang   0,
155824d5174aSHong Zhang   0,
155924d5174aSHong Zhang   0,
156024d5174aSHong Zhang   MatGetRowMax_MPISBAIJ};
1561a30f8f8cSSatish Balay 
1562a30f8f8cSSatish Balay 
1563a30f8f8cSSatish Balay EXTERN_C_BEGIN
15644a2ae208SSatish Balay #undef __FUNCT__
15654a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1566a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1567a30f8f8cSSatish Balay {
1568a30f8f8cSSatish Balay   PetscFunctionBegin;
1569a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1570a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1571a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1572a30f8f8cSSatish Balay }
1573a30f8f8cSSatish Balay EXTERN_C_END
1574a30f8f8cSSatish Balay 
1575273d9f13SBarry Smith EXTERN_C_BEGIN
15764a2ae208SSatish Balay #undef __FUNCT__
15774a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1578b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B)
1579b5df2d14SHong Zhang {
1580b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1581ca54ac64SHong Zhang   int          ierr;
1582b5df2d14SHong Zhang   PetscTruth   flg;
1583b5df2d14SHong Zhang 
1584b5df2d14SHong Zhang   PetscFunctionBegin;
1585b5df2d14SHong Zhang 
1586b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1587b0a32e0cSBarry Smith   B->data = (void*)b;
1588b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1589b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1590b5df2d14SHong Zhang 
1591b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1592b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1593b5df2d14SHong Zhang   B->mapping    = 0;
1594b5df2d14SHong Zhang   B->factor     = 0;
1595b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1596b5df2d14SHong Zhang 
1597b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1598b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1599b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1600b5df2d14SHong Zhang 
1601b5df2d14SHong Zhang   /* build local table of row and column ownerships */
160282502324SSatish Balay   ierr          = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1603273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1604273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
1605b0a32e0cSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1606b5df2d14SHong Zhang 
1607b5df2d14SHong Zhang   /* build cache for off array entries formed */
1608b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1609b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1610b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1611b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1612b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1613b5df2d14SHong Zhang 
1614f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1615b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
161664a35ccbSBarry Smith   b->setvalueslen     = 0;
1617b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1618b5df2d14SHong Zhang #endif
1619b5df2d14SHong Zhang 
1620b5df2d14SHong Zhang   /* stuff used in block assembly */
1621b5df2d14SHong Zhang   b->barray       = 0;
1622b5df2d14SHong Zhang 
1623b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1624b5df2d14SHong Zhang   b->lvec         = 0;
1625b5df2d14SHong Zhang   b->Mvctx        = 0;
162640781036SHong Zhang   b->slvec0       = 0;
162740781036SHong Zhang   b->slvec0b      = 0;
162840781036SHong Zhang   b->slvec1       = 0;
162940781036SHong Zhang   b->slvec1a      = 0;
163040781036SHong Zhang   b->slvec1b      = 0;
163140781036SHong Zhang   b->sMvctx       = 0;
1632b5df2d14SHong Zhang 
1633b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1634b5df2d14SHong Zhang   b->rowindices   = 0;
1635b5df2d14SHong Zhang   b->rowvalues    = 0;
1636b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1637b5df2d14SHong Zhang 
1638b5df2d14SHong Zhang   /* hash table stuff */
1639b5df2d14SHong Zhang   b->ht           = 0;
1640b5df2d14SHong Zhang   b->hd           = 0;
1641b5df2d14SHong Zhang   b->ht_size      = 0;
1642b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1643b5df2d14SHong Zhang   b->ht_fact      = 0;
1644b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1645b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1646b5df2d14SHong Zhang 
1647e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1648b5df2d14SHong Zhang   if (flg) {
1649f6275e2eSBarry Smith     PetscReal fact = 1.39;
1650b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1651e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1652b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1653b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1654b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1655b5df2d14SHong Zhang   }
1656b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1657b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1658b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1659b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1660b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1661b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1662b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1663b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1664b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1665b5df2d14SHong Zhang   PetscFunctionReturn(0);
1666b5df2d14SHong Zhang }
1667273d9f13SBarry Smith EXTERN_C_END
1668b5df2d14SHong Zhang 
16694a2ae208SSatish Balay #undef __FUNCT__
16704a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1671b5df2d14SHong Zhang /*@C
1672b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1673b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1674b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1675b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1676b5df2d14SHong Zhang 
1677b5df2d14SHong Zhang    Collective on Mat
1678b5df2d14SHong Zhang 
1679b5df2d14SHong Zhang    Input Parameters:
1680b5df2d14SHong Zhang +  A - the matrix
1681b5df2d14SHong Zhang .  bs   - size of blockk
1682b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1683b5df2d14SHong Zhang            submatrix  (same for all local rows)
1684b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
16856d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
16866d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
16876d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1688b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1689b5df2d14SHong Zhang            submatrix (same for all local rows).
1690b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1691b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1692b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1693b5df2d14SHong Zhang 
1694b5df2d14SHong Zhang 
1695b5df2d14SHong Zhang    Options Database Keys:
1696b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1697b5df2d14SHong Zhang                      block calculations (much slower)
1698b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1699b5df2d14SHong Zhang 
1700b5df2d14SHong Zhang    Notes:
1701b5df2d14SHong Zhang 
1702b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1703b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1704b5df2d14SHong Zhang 
1705b5df2d14SHong Zhang    Storage Information:
1706b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1707b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1708b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1709b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1710b5df2d14SHong Zhang 
1711b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1712b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1713b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1714b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1715b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1716b5df2d14SHong Zhang 
1717b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1718b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1719b5df2d14SHong Zhang 
1720b5df2d14SHong Zhang .vb
1721b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1722b5df2d14SHong Zhang           -------------------
1723b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1724b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1725b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1726b5df2d14SHong Zhang           -------------------
1727b5df2d14SHong Zhang .ve
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1730b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17316d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17326d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1733b5df2d14SHong Zhang 
17346d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
17356d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1736b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1737b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1738b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1739b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1740b5df2d14SHong Zhang    matrices.
1741b5df2d14SHong Zhang 
1742b5df2d14SHong Zhang    Level: intermediate
1743b5df2d14SHong Zhang 
1744b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1745b5df2d14SHong Zhang 
1746b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1747b5df2d14SHong Zhang @*/
1748b5df2d14SHong Zhang 
1749b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
1750b5df2d14SHong Zhang {
1751b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1752eb7adc28SSatish Balay   int          ierr,i,mbs,Mbs;
1753273d9f13SBarry Smith   PetscTruth   flg2;
1754b5df2d14SHong Zhang 
1755b5df2d14SHong Zhang   PetscFunctionBegin;
1756273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr);
1757273d9f13SBarry Smith   if (!flg2) PetscFunctionReturn(0);
1758273d9f13SBarry Smith 
1759e82a3eeeSBarry Smith   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1760b5df2d14SHong Zhang 
1761b5df2d14SHong Zhang   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1762435da068SBarry Smith   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1763435da068SBarry Smith   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1764435da068SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
1765435da068SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
1766b5df2d14SHong Zhang   if (d_nnz) {
1767b5df2d14SHong Zhang     for (i=0; i<B->m/bs; i++) {
1768b5df2d14SHong Zhang       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
1769b5df2d14SHong Zhang     }
1770b5df2d14SHong Zhang   }
1771b5df2d14SHong Zhang   if (o_nnz) {
1772b5df2d14SHong Zhang     for (i=0; i<B->m/bs; i++) {
1773b5df2d14SHong Zhang       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
1774b5df2d14SHong Zhang     }
1775b5df2d14SHong Zhang   }
177619138431SHong Zhang   B->preallocated = PETSC_TRUE;
177719138431SHong Zhang   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
177819138431SHong Zhang   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
17798a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
17808a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1781b5df2d14SHong Zhang 
1782b5df2d14SHong Zhang   b   = (Mat_MPISBAIJ*)B->data;
1783b5df2d14SHong Zhang   mbs = B->m/bs;
1784b5df2d14SHong Zhang   Mbs = B->M/bs;
1785b5df2d14SHong Zhang   if (mbs*bs != B->m) {
178619138431SHong Zhang     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs);
1787b5df2d14SHong Zhang   }
1788b5df2d14SHong Zhang 
1789b5df2d14SHong Zhang   b->bs  = bs;
1790b5df2d14SHong Zhang   b->bs2 = bs*bs;
1791b5df2d14SHong Zhang   b->mbs = mbs;
1792b5df2d14SHong Zhang   b->nbs = mbs;
1793b5df2d14SHong Zhang   b->Mbs = Mbs;
1794b5df2d14SHong Zhang   b->Nbs = Mbs;
1795b5df2d14SHong Zhang 
1796b5df2d14SHong Zhang   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
1797b5df2d14SHong Zhang   b->rowners[0]    = 0;
1798b5df2d14SHong Zhang   for (i=2; i<=b->size; i++) {
1799b5df2d14SHong Zhang     b->rowners[i] += b->rowners[i-1];
1800b5df2d14SHong Zhang   }
1801b5df2d14SHong Zhang   b->rstart    = b->rowners[b->rank];
1802b5df2d14SHong Zhang   b->rend      = b->rowners[b->rank+1];
1803b5df2d14SHong Zhang   b->cstart    = b->rstart;
1804b5df2d14SHong Zhang   b->cend      = b->rend;
1805b5df2d14SHong Zhang   for (i=0; i<=b->size; i++) {
1806b5df2d14SHong Zhang     b->rowners_bs[i] = b->rowners[i]*bs;
1807b5df2d14SHong Zhang   }
1808b5df2d14SHong Zhang   b->rstart_bs = b-> rstart*bs;
1809b5df2d14SHong Zhang   b->rend_bs   = b->rend*bs;
1810b5df2d14SHong Zhang 
1811b5df2d14SHong Zhang   b->cstart_bs = b->cstart*bs;
1812b5df2d14SHong Zhang   b->cend_bs   = b->cend*bs;
1813b5df2d14SHong Zhang 
1814b5df2d14SHong Zhang 
1815b5df2d14SHong Zhang   ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
1816b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->A);
1817b5df2d14SHong Zhang   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
1818b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->B);
1819b5df2d14SHong Zhang 
1820b5df2d14SHong Zhang   /* build cache for off array entries formed */
1821b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1822b5df2d14SHong Zhang 
1823b5df2d14SHong Zhang   PetscFunctionReturn(0);
1824b5df2d14SHong Zhang }
1825b5df2d14SHong Zhang 
18264a2ae208SSatish Balay #undef __FUNCT__
18274a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1828a30f8f8cSSatish Balay /*@C
1829a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1830a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1831a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1832a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1833a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1834a30f8f8cSSatish Balay 
1835a30f8f8cSSatish Balay    Collective on MPI_Comm
1836a30f8f8cSSatish Balay 
1837a30f8f8cSSatish Balay    Input Parameters:
1838a30f8f8cSSatish Balay +  comm - MPI communicator
1839a30f8f8cSSatish Balay .  bs   - size of blockk
1840a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1841a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1842a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1843a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1844a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1845a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1846a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1847a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1848a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1849a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1850a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
18516d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
18526d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
18536d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1854a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1855a30f8f8cSSatish Balay            submatrix (same for all local rows).
1856a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1857a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1858a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1859a30f8f8cSSatish Balay 
1860a30f8f8cSSatish Balay    Output Parameter:
1861a30f8f8cSSatish Balay .  A - the matrix
1862a30f8f8cSSatish Balay 
1863a30f8f8cSSatish Balay    Options Database Keys:
1864a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1865a30f8f8cSSatish Balay                      block calculations (much slower)
1866a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1867a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1868a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1869a30f8f8cSSatish Balay 
1870a30f8f8cSSatish Balay    Notes:
1871a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1872a30f8f8cSSatish Balay    (possibly both).
1873a30f8f8cSSatish Balay 
1874a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1875a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1876a30f8f8cSSatish Balay 
1877a30f8f8cSSatish Balay    Storage Information:
1878a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1879a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1880a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1881a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1882a30f8f8cSSatish Balay 
1883a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1884a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1885a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1886a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1887a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1888a30f8f8cSSatish Balay 
1889a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1890a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1891a30f8f8cSSatish Balay 
1892a30f8f8cSSatish Balay .vb
1893a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1894a30f8f8cSSatish Balay           -------------------
1895a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1896a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1897a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1898a30f8f8cSSatish Balay           -------------------
1899a30f8f8cSSatish Balay .ve
1900a30f8f8cSSatish Balay 
1901a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1902a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19036d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19046d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1905a30f8f8cSSatish Balay 
19066d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19076d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1908a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1909a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1910a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1911a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1912a30f8f8cSSatish Balay    matrices.
1913a30f8f8cSSatish Balay 
1914a30f8f8cSSatish Balay    Level: intermediate
1915a30f8f8cSSatish Balay 
1916a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1917a30f8f8cSSatish Balay 
1918a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1919a30f8f8cSSatish Balay @*/
1920a30f8f8cSSatish Balay 
1921a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
1922a30f8f8cSSatish Balay {
1923273d9f13SBarry Smith   int ierr,size;
1924a30f8f8cSSatish Balay 
1925a30f8f8cSSatish Balay   PetscFunctionBegin;
1926b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
1927273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1928273d9f13SBarry Smith   if (size > 1) {
1929b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1930b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1931273d9f13SBarry Smith   } else {
1932273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1933273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1934273d9f13SBarry Smith   }
1935a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1936a30f8f8cSSatish Balay }
1937a30f8f8cSSatish Balay 
1938a30f8f8cSSatish Balay 
19394a2ae208SSatish Balay #undef __FUNCT__
19404a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
1941a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1942a30f8f8cSSatish Balay {
1943a30f8f8cSSatish Balay   Mat          mat;
1944a30f8f8cSSatish Balay   Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1945a30f8f8cSSatish Balay   int          ierr,len=0;
1946a30f8f8cSSatish Balay 
1947a30f8f8cSSatish Balay   PetscFunctionBegin;
1948a30f8f8cSSatish Balay   *newmat       = 0;
1949b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
1950b5df2d14SHong Zhang   ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr);
1951273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
1952b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1953a30f8f8cSSatish Balay   a->bs  = oldmat->bs;
1954a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
1955a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
1956a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
1957a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
1958a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
1959a30f8f8cSSatish Balay 
1960a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
1961a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
1962a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
1963a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
1964a30f8f8cSSatish Balay   a->size         = oldmat->size;
1965a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1966a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1967a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1968a30f8f8cSSatish Balay   a->rowindices   = 0;
1969a30f8f8cSSatish Balay   a->rowvalues    = 0;
1970a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1971a30f8f8cSSatish Balay   a->barray       = 0;
1972a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
1973a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
1974a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
1975a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
1976a30f8f8cSSatish Balay 
1977a30f8f8cSSatish Balay   /* hash table stuff */
1978a30f8f8cSSatish Balay   a->ht           = 0;
1979a30f8f8cSSatish Balay   a->hd           = 0;
1980a30f8f8cSSatish Balay   a->ht_size      = 0;
1981a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
1982a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
1983a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
1984a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
1985a30f8f8cSSatish Balay 
198682502324SSatish Balay   ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr);
1987b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1988a30f8f8cSSatish Balay   a->cowners    = a->rowners + a->size + 2;
1989a30f8f8cSSatish Balay   a->rowners_bs = a->cowners + a->size + 2;
1990a30f8f8cSSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
1991a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
1992a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
1993a30f8f8cSSatish Balay   if (oldmat->colmap) {
1994a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
1995a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
1996a30f8f8cSSatish Balay #else
199782502324SSatish Balay     ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr);
1998b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int));
1999a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
2000a30f8f8cSSatish Balay #endif
2001a30f8f8cSSatish Balay   } else a->colmap = 0;
2002a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
200382502324SSatish Balay     ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr);
2004b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
2005a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
2006a30f8f8cSSatish Balay   } else a->garray = 0;
2007a30f8f8cSSatish Balay 
2008a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2009b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2010a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2011a30f8f8cSSatish Balay 
2012b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
2013a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2014b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2015a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2016b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2017b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2018a30f8f8cSSatish Balay   *newmat = mat;
2019a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2020a30f8f8cSSatish Balay }
2021a30f8f8cSSatish Balay 
2022a30f8f8cSSatish Balay #include "petscsys.h"
2023a30f8f8cSSatish Balay 
2024273d9f13SBarry Smith EXTERN_C_BEGIN
20254a2ae208SSatish Balay #undef __FUNCT__
20264a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2027b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat)
2028a30f8f8cSSatish Balay {
2029a30f8f8cSSatish Balay   Mat          A;
2030a30f8f8cSSatish Balay   int          i,nz,ierr,j,rstart,rend,fd;
203187828ca2SBarry Smith   PetscScalar  *vals,*buf;
2032a30f8f8cSSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
2033a30f8f8cSSatish Balay   MPI_Status   status;
2034a30f8f8cSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
2035a30f8f8cSSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
2036a30f8f8cSSatish Balay   int          tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
2037a30f8f8cSSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2038a30f8f8cSSatish Balay   int          dcount,kmax,k,nzcount,tmp;
2039*27f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS)
204027fa2452SHong Zhang   PetscTruth   flag;
204127fa2452SHong Zhang #endif
2042a30f8f8cSSatish Balay 
2043a30f8f8cSSatish Balay   PetscFunctionBegin;
2044b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2045a30f8f8cSSatish Balay 
2046a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2047a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2048a30f8f8cSSatish Balay   if (!rank) {
2049b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2050a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2051552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2052a30f8f8cSSatish Balay     if (header[3] < 0) {
205329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2054a30f8f8cSSatish Balay     }
2055a30f8f8cSSatish Balay   }
2056a30f8f8cSSatish Balay 
2057a30f8f8cSSatish Balay   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
2058a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2059a30f8f8cSSatish Balay 
206029bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2061a30f8f8cSSatish Balay 
2062a30f8f8cSSatish Balay   /*
2063a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2064a30f8f8cSSatish Balay      divisible by the blocksize
2065a30f8f8cSSatish Balay   */
2066a30f8f8cSSatish Balay   Mbs        = M/bs;
2067a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2068a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2069a30f8f8cSSatish Balay   else                  Mbs++;
2070a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2071b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2072a30f8f8cSSatish Balay   }
2073a30f8f8cSSatish Balay 
2074a30f8f8cSSatish Balay   /* determine ownership of all rows */
2075a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2076a30f8f8cSSatish Balay   m          = mbs*bs;
2077b0a32e0cSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
2078a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2079a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2080a30f8f8cSSatish Balay   rowners[0] = 0;
2081a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2082a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2083a30f8f8cSSatish Balay   rstart = rowners[rank];
2084a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2085a30f8f8cSSatish Balay 
2086a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
208782502324SSatish Balay   ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr);
2088a30f8f8cSSatish Balay   if (!rank) {
2089b0a32e0cSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
2090a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2091a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
209282502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
2093a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2094a30f8f8cSSatish Balay     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2095a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2096a30f8f8cSSatish Balay   } else {
2097a30f8f8cSSatish Balay     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2098a30f8f8cSSatish Balay   }
2099a30f8f8cSSatish Balay 
21000222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2101a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
210282502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
2103a30f8f8cSSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
2104a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2105a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2106a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2107a30f8f8cSSatish Balay       }
2108a30f8f8cSSatish Balay     }
2109a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2110a30f8f8cSSatish Balay 
2111a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2112a30f8f8cSSatish Balay     maxnz = 0;
2113a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2114a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2115a30f8f8cSSatish Balay     }
211682502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
2117a30f8f8cSSatish Balay 
2118a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2119a30f8f8cSSatish Balay     nz     = procsnz[0];
212082502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2121a30f8f8cSSatish Balay     mycols = ibuf;
2122a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2123a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2124a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2125a30f8f8cSSatish Balay 
2126a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2127a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2128a30f8f8cSSatish Balay       nz   = procsnz[i];
2129a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2130a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
2131a30f8f8cSSatish Balay     }
2132a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2133a30f8f8cSSatish Balay     if (size != 1) {
2134a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2135a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2136a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2137a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
2138a30f8f8cSSatish Balay     }
2139a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21400222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2141a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2142a30f8f8cSSatish Balay     nz = 0;
2143a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2144a30f8f8cSSatish Balay       nz += locrowlens[i];
2145a30f8f8cSSatish Balay     }
214682502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2147a30f8f8cSSatish Balay     mycols = ibuf;
2148a30f8f8cSSatish Balay     /* receive message of column indices*/
2149a30f8f8cSSatish Balay     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2150a30f8f8cSSatish Balay     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
215129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2152a30f8f8cSSatish Balay   }
2153a30f8f8cSSatish Balay 
2154a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
215582502324SSatish Balay   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr);
2156a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
215782502324SSatish Balay   ierr     = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr);
2158a30f8f8cSSatish Balay   ierr     = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
2159a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2160a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2161a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2162a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2163a30f8f8cSSatish Balay     dcount  = 0;
2164a30f8f8cSSatish Balay     odcount = 0;
2165a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2166a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2167a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
21680222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2169a30f8f8cSSatish Balay         if (!mask[tmp]) {
2170a30f8f8cSSatish Balay           mask[tmp] = 1;
21710222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
21720222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2173a30f8f8cSSatish Balay         }
2174a30f8f8cSSatish Balay       }
2175a30f8f8cSSatish Balay       rowcount++;
2176a30f8f8cSSatish Balay     }
2177a30f8f8cSSatish Balay 
21780222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
21790222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2180a30f8f8cSSatish Balay 
2181a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2182a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2183a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2184a30f8f8cSSatish Balay   }
2185a30f8f8cSSatish Balay 
2186a30f8f8cSSatish Balay   /* create our matrix */
21877e06b45fSHong Zhang   ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat);
2188bfe19f1aSHong Zhang   CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   A = *newmat;
2190273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2191a30f8f8cSSatish Balay 
2192a30f8f8cSSatish Balay   if (!rank) {
219387828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2194a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2195a30f8f8cSSatish Balay     nz = procsnz[0];
2196a30f8f8cSSatish Balay     vals = buf;
2197a30f8f8cSSatish Balay     mycols = ibuf;
2198a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2199a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2200a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2201a30f8f8cSSatish Balay 
2202a30f8f8cSSatish Balay     /* insert into matrix */
2203a30f8f8cSSatish Balay     jj      = rstart*bs;
2204a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22057e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2206a30f8f8cSSatish Balay       mycols += locrowlens[i];
2207a30f8f8cSSatish Balay       vals   += locrowlens[i];
2208a30f8f8cSSatish Balay       jj++;
2209a30f8f8cSSatish Balay     }
22107e06b45fSHong Zhang 
2211a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2212a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2213a30f8f8cSSatish Balay       nz   = procsnz[i];
2214a30f8f8cSSatish Balay       vals = buf;
2215a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2216a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2217a30f8f8cSSatish Balay     }
2218a30f8f8cSSatish Balay     /* the last proc */
2219a30f8f8cSSatish Balay     if (size != 1){
2220a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2221a30f8f8cSSatish Balay       vals = buf;
2222a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2224a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     }
2226a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22277e06b45fSHong Zhang 
2228a30f8f8cSSatish Balay   } else {
2229a30f8f8cSSatish Balay     /* receive numeric values */
223087828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay 
2232a30f8f8cSSatish Balay     /* receive message of values*/
2233a30f8f8cSSatish Balay     vals   = buf;
2234a30f8f8cSSatish Balay     mycols = ibuf;
2235a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2236a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
223729bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2238a30f8f8cSSatish Balay 
2239a30f8f8cSSatish Balay     /* insert into matrix */
2240a30f8f8cSSatish Balay     jj      = rstart*bs;
2241a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2242a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2243a30f8f8cSSatish Balay       mycols += locrowlens[i];
2244a30f8f8cSSatish Balay       vals   += locrowlens[i];
2245a30f8f8cSSatish Balay       jj++;
2246a30f8f8cSSatish Balay     }
2247a30f8f8cSSatish Balay   }
22487e06b45fSHong Zhang 
2249a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2250a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2251a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2252a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2253a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2254a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2255a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
225727fa2452SHong Zhang #if defined(PETSC_HAVE_SPOOLES)
225827fa2452SHong Zhang   ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
22590f39d4ecSHong Zhang   if (flag) {
22600f39d4ecSHong Zhang     if (size == 1) {
22610f39d4ecSHong Zhang       ierr = MatUseSpooles_SeqAIJ(A);CHKERRQ(ierr);
22620f39d4ecSHong Zhang     } else {
22630f39d4ecSHong Zhang       ierr = MatUseSpooles_MPISBAIJ(A);CHKERRQ(ierr);
22640f39d4ecSHong Zhang     }
22650f39d4ecSHong Zhang   }
226627fa2452SHong Zhang #endif
2267*27f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS)
2268*27f1aa60SHong Zhang   ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr);
2269*27f1aa60SHong Zhang   if (flag) {
2270*27f1aa60SHong Zhang       ierr = MatUseMUMPS_MPIAIJ(A);CHKERRQ(ierr);
2271*27f1aa60SHong Zhang   }
2272*27f1aa60SHong Zhang #endif
2273a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2274a30f8f8cSSatish Balay }
2275273d9f13SBarry Smith EXTERN_C_END
2276a30f8f8cSSatish Balay 
22774a2ae208SSatish Balay #undef __FUNCT__
22784a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2279a30f8f8cSSatish Balay /*@
2280a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2281a30f8f8cSSatish Balay 
2282a30f8f8cSSatish Balay    Input Parameters:
2283a30f8f8cSSatish Balay .  mat  - the matrix
2284a30f8f8cSSatish Balay .  fact - factor
2285a30f8f8cSSatish Balay 
2286a30f8f8cSSatish Balay    Collective on Mat
2287a30f8f8cSSatish Balay 
2288a30f8f8cSSatish Balay    Level: advanced
2289a30f8f8cSSatish Balay 
2290a30f8f8cSSatish Balay   Notes:
2291a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2292a30f8f8cSSatish Balay 
2293a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2294a30f8f8cSSatish Balay 
2295a30f8f8cSSatish Balay .seealso: MatSetOption()
2296a30f8f8cSSatish Balay @*/
2297a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2298a30f8f8cSSatish Balay {
2299a30f8f8cSSatish Balay   PetscFunctionBegin;
230029bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
230196e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2302a30f8f8cSSatish Balay }
230324d5174aSHong Zhang 
23044a2ae208SSatish Balay #undef __FUNCT__
23054a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
230624d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v)
230724d5174aSHong Zhang {
230824d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
2309f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(a->B)->data;
2310ca54ac64SHong Zhang   PetscReal    atmp;
231187828ca2SBarry Smith   PetscReal    *work,*svalues,*rvalues;
2312ca54ac64SHong Zhang   int          ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
2313154bba0bSHong Zhang   int          rank,size,*rowners_bs,dest,count,source;
231487828ca2SBarry Smith   PetscScalar  *va;
23158a1c53f2SBarry Smith   MatScalar    *ba;
2316f4c0e9e4SHong Zhang   MPI_Status   stat;
231724d5174aSHong Zhang 
231824d5174aSHong Zhang   PetscFunctionBegin;
2319d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
2320f4c0e9e4SHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2321f4c0e9e4SHong Zhang 
232256faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
232356faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2324f4c0e9e4SHong Zhang 
2325f4c0e9e4SHong Zhang   bs   = a->bs;
2326f4c0e9e4SHong Zhang   mbs  = a->mbs;
2327f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2328f4c0e9e4SHong Zhang   ba   = b->a;
2329f4c0e9e4SHong Zhang   bi   = b->i;
2330f4c0e9e4SHong Zhang   bj   = b->j;
2331ca54ac64SHong Zhang   /*
233256faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs);
233356faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
2334ca54ac64SHong Zhang   */
2335f4c0e9e4SHong Zhang 
2336f4c0e9e4SHong Zhang   /* find ownerships */
2337f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2338f4c0e9e4SHong Zhang   /*
233904d41228SHong Zhang   if (!rank){
234004d41228SHong Zhang     for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]);
2341f4c0e9e4SHong Zhang   }
2342f4c0e9e4SHong Zhang   */
2343f4c0e9e4SHong Zhang 
2344f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
234582502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2346ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2347f4c0e9e4SHong Zhang 
2348f4c0e9e4SHong Zhang   /* row_max for B */
2349b8475685SHong Zhang   if (rank != size-1){
2350f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2351f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2352f4c0e9e4SHong Zhang       brow  = bs*i;
2353f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2354f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2355f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2356ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
235704d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2358ca54ac64SHong Zhang           /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */
2359f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2360f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2361ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2362f4c0e9e4SHong Zhang             /* printf("val[%d,%d]: %g\n",row,col,atmp); */
2363ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2364f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2365f4c0e9e4SHong Zhang           }
2366f4c0e9e4SHong Zhang         }
2367f4c0e9e4SHong Zhang         bj++;
2368f4c0e9e4SHong Zhang       }
2369f4c0e9e4SHong Zhang     }
237004d41228SHong Zhang     /*
237104d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank);
237204d41228SHong Zhang       for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]);
237304d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d]: \n");
237404d41228SHong Zhang       */
2375f4c0e9e4SHong Zhang 
2376f4c0e9e4SHong Zhang     /* send values to its owners */
2377f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2378f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2379ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
238056faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2381ca54ac64SHong Zhang       /*
238256faa61eSBarry Smith       PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]);
238356faa61eSBarry Smith       PetscSynchronizedFlush(A->comm);
2384ca54ac64SHong Zhang       */
2385ca54ac64SHong Zhang     }
2386f4c0e9e4SHong Zhang   }
2387f4c0e9e4SHong Zhang 
2388f4c0e9e4SHong Zhang   /* receive values */
2389ca54ac64SHong Zhang   if (rank){
2390f4c0e9e4SHong Zhang     rvalues = work;
2391ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2392f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
239356faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2394f4c0e9e4SHong Zhang       /* process values */
2395f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2396ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2397f4c0e9e4SHong Zhang       }
2398ca54ac64SHong Zhang       /*
239956faa61eSBarry Smith       PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]);
240056faa61eSBarry Smith       PetscSynchronizedFlush(A->comm);
2401ca54ac64SHong Zhang       */
2402f4c0e9e4SHong Zhang     }
2403ca54ac64SHong Zhang   }
2404f4c0e9e4SHong Zhang 
2405f4c0e9e4SHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2406ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
240724d5174aSHong Zhang   PetscFunctionReturn(0);
240824d5174aSHong Zhang }
24092798e883SHong Zhang 
24102798e883SHong Zhang #undef __FUNCT__
24112798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
2412c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
24132798e883SHong Zhang {
24142798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2415ffe4fb16SHong Zhang   int            ierr,mbs=mat->mbs,bs=mat->bs;
2416ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2417ffe4fb16SHong Zhang   Vec            bb1;
2418ffe4fb16SHong Zhang 
2419ffe4fb16SHong Zhang   PetscFunctionBegin;
2420ffe4fb16SHong Zhang   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
2421ffe4fb16SHong Zhang   if (bs > 1)
2422ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2423ffe4fb16SHong Zhang 
2424ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2425ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2426ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2427ffe4fb16SHong Zhang       its--;
2428ffe4fb16SHong Zhang     }
2429ffe4fb16SHong Zhang 
2430ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2431ffe4fb16SHong Zhang     while (its--){
2432ffe4fb16SHong Zhang 
2433ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2434ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2435ffe4fb16SHong Zhang 
2436ffe4fb16SHong Zhang       /* copy xx into slvec0a */
2437ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2438ffe4fb16SHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2439ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2440ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2441ffe4fb16SHong Zhang 
2442ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2443ffe4fb16SHong Zhang 
2444ffe4fb16SHong Zhang       /* copy bb into slvec1a */
2445ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2446ffe4fb16SHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2447ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2448ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2449ffe4fb16SHong Zhang 
2450ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2451ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2452ffe4fb16SHong Zhang 
2453ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2454ffe4fb16SHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2455ffe4fb16SHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2456ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2457ffe4fb16SHong Zhang 
2458ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2459ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2460ffe4fb16SHong Zhang 
2461ffe4fb16SHong Zhang       /* local diagonal sweep */
2462ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2463ffe4fb16SHong Zhang     }
2464ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2465ffe4fb16SHong Zhang   } else {
2466ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2467ffe4fb16SHong Zhang   }
2468ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2469ffe4fb16SHong Zhang }
2470ffe4fb16SHong Zhang 
2471ffe4fb16SHong Zhang #undef __FUNCT__
2472ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
2473ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
2474ffe4fb16SHong Zhang {
2475ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
24762798e883SHong Zhang   int            ierr;
2477d05c616dSSatish Balay   PetscScalar    mone=-1.0;
24782798e883SHong Zhang   Vec            lvec1,bb1;
24792798e883SHong Zhang 
24802798e883SHong Zhang   PetscFunctionBegin;
248191723122SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
24822798e883SHong Zhang   if (mat->bs > 1)
24832798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
24842798e883SHong Zhang 
2485c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
24862798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2487bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
24882798e883SHong Zhang       its--;
24892798e883SHong Zhang     }
24902798e883SHong Zhang 
24912798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
24922798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24932798e883SHong Zhang     while (its--){
24942798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24952798e883SHong Zhang 
24962798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
24972798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
24982798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
24992798e883SHong Zhang 
25002798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25012798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25022798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25032798e883SHong Zhang 
25042798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
25052798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
25062798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25072798e883SHong Zhang 
25082798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25092798e883SHong Zhang 
2510c14dc6b6SHong Zhang       /* diagonal sweep */
2511bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25122798e883SHong Zhang     }
25132798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25142798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2515c14dc6b6SHong Zhang   } else {
2516c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2517c14dc6b6SHong Zhang   }
25182798e883SHong Zhang   PetscFunctionReturn(0);
25192798e883SHong Zhang }
25202798e883SHong Zhang 
2521