1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 10b147fbf3SStefano Zampini 11b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 12b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 13b147fbf3SStefano Zampini { 14b147fbf3SStefano Zampini Mat preallocator; 15b147fbf3SStefano Zampini PetscInt r,rstart,rend; 16b147fbf3SStefano Zampini PetscInt bs,i,m,n,M,N; 17b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 18b147fbf3SStefano Zampini PetscErrorCode ierr; 19b147fbf3SStefano Zampini 20b147fbf3SStefano Zampini PetscFunctionBegin; 21b147fbf3SStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B,nm,2); 23b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 24b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i],MAT_CLASSID,3); 25b147fbf3SStefano Zampini ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr); 26b147fbf3SStefano Zampini if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts"); 27b147fbf3SStefano Zampini } 28b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B,fill,5); 29b147fbf3SStefano Zampini ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr); 30b147fbf3SStefano Zampini ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr); 31b147fbf3SStefano Zampini ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr); 32b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr); 33b147fbf3SStefano Zampini ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr); 34b147fbf3SStefano Zampini ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr); 35b147fbf3SStefano Zampini ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr); 36b147fbf3SStefano Zampini ierr = MatSetUp(preallocator);CHKERRQ(ierr); 37b147fbf3SStefano Zampini ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr); 38b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 39b147fbf3SStefano Zampini PetscInt ncols; 40b147fbf3SStefano Zampini const PetscInt *row; 41b147fbf3SStefano Zampini const PetscScalar *vals; 42b147fbf3SStefano Zampini 43b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 44b147fbf3SStefano Zampini ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 45b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 46b147fbf3SStefano Zampini if (symm && symm[i]) { 47b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 48b147fbf3SStefano Zampini } 49b147fbf3SStefano Zampini ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 50b147fbf3SStefano Zampini } 51b147fbf3SStefano Zampini } 52b147fbf3SStefano Zampini ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 53b147fbf3SStefano Zampini ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 54b147fbf3SStefano Zampini ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr); 55b147fbf3SStefano Zampini ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 56b147fbf3SStefano Zampini PetscFunctionReturn(0); 57b147fbf3SStefano Zampini } 58b147fbf3SStefano Zampini 59*28d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 60b147fbf3SStefano Zampini { 61b147fbf3SStefano Zampini Mat B; 62b147fbf3SStefano Zampini PetscErrorCode ierr; 63b147fbf3SStefano Zampini PetscInt r; 64b147fbf3SStefano Zampini 65b147fbf3SStefano Zampini PetscFunctionBegin; 66b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 67*28d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE,isdense; 68b147fbf3SStefano Zampini PetscInt bs; 69b147fbf3SStefano Zampini 70b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 71b147fbf3SStefano Zampini ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 72b147fbf3SStefano Zampini ierr = MatSetType(B,newtype);CHKERRQ(ierr); 73b147fbf3SStefano Zampini ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr); 74b147fbf3SStefano Zampini ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr); 75b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 76b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 77*28d58a37SPierre Jolivet ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 78*28d58a37SPierre Jolivet if (!isdense) { 79b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 80b147fbf3SStefano Zampini ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr); 81b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 82*28d58a37SPierre Jolivet } else { 83*28d58a37SPierre Jolivet ierr = MatSetUp(B);CHKERRQ(ierr); 84*28d58a37SPierre Jolivet } 85*28d58a37SPierre Jolivet } else { 86*28d58a37SPierre Jolivet B = *newmat; 87*28d58a37SPierre Jolivet ierr = MatZeroEntries(B);CHKERRQ(ierr); 88*28d58a37SPierre Jolivet } 89b147fbf3SStefano Zampini 90b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 91b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 92b147fbf3SStefano Zampini PetscInt ncols; 93b147fbf3SStefano Zampini const PetscInt *row; 94b147fbf3SStefano Zampini const PetscScalar *vals; 95b147fbf3SStefano Zampini 96b147fbf3SStefano Zampini ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 97b147fbf3SStefano Zampini ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 98b147fbf3SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 99b147fbf3SStefano Zampini ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 100b147fbf3SStefano Zampini } 101b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 102b147fbf3SStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 103b147fbf3SStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 106b147fbf3SStefano Zampini ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 107b147fbf3SStefano Zampini } else { 108b147fbf3SStefano Zampini *newmat = B; 109b147fbf3SStefano Zampini } 110b147fbf3SStefano Zampini PetscFunctionReturn(0); 111b147fbf3SStefano Zampini } 112b147fbf3SStefano Zampini 1137087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 114a30f8f8cSSatish Balay { 115f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 116dfbe8321SBarry Smith PetscErrorCode ierr; 117a30f8f8cSSatish Balay 118a30f8f8cSSatish Balay PetscFunctionBegin; 119a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 120a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 121a30f8f8cSSatish Balay PetscFunctionReturn(0); 122a30f8f8cSSatish Balay } 123a30f8f8cSSatish Balay 1247087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 125a30f8f8cSSatish Balay { 126f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 127dfbe8321SBarry Smith PetscErrorCode ierr; 128a30f8f8cSSatish Balay 129a30f8f8cSSatish Balay PetscFunctionBegin; 130a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 131a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 132a30f8f8cSSatish Balay PetscFunctionReturn(0); 133a30f8f8cSSatish Balay } 134a30f8f8cSSatish Balay 135d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 136a30f8f8cSSatish Balay { \ 137a30f8f8cSSatish Balay brow = row/bs; \ 138a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 139a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 140a30f8f8cSSatish Balay bcol = col/bs; \ 141a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 142a30f8f8cSSatish Balay low = 0; high = nrow; \ 143a30f8f8cSSatish Balay while (high-low > 3) { \ 144a30f8f8cSSatish Balay t = (low+high)/2; \ 145a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 146a30f8f8cSSatish Balay else low = t; \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 149a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 150a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 151a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 152a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 153a30f8f8cSSatish Balay else *bap = value; \ 154a30f8f8cSSatish Balay goto a_noinsert; \ 155a30f8f8cSSatish Balay } \ 156a30f8f8cSSatish Balay } \ 157a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 158d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 159fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 160a30f8f8cSSatish Balay N = nrow++ - 1; \ 161a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 162580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 163580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 164580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 165a30f8f8cSSatish Balay rp[_i] = bcol; \ 166a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 167e56f5c9eSBarry Smith A->nonzerostate++;\ 168a30f8f8cSSatish Balay a_noinsert:; \ 169a30f8f8cSSatish Balay ailen[brow] = nrow; \ 170a30f8f8cSSatish Balay } 171e5e170daSBarry Smith 172d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 173a30f8f8cSSatish Balay { \ 174a30f8f8cSSatish Balay brow = row/bs; \ 175a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 176a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 177a30f8f8cSSatish Balay bcol = col/bs; \ 178a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 179a30f8f8cSSatish Balay low = 0; high = nrow; \ 180a30f8f8cSSatish Balay while (high-low > 3) { \ 181a30f8f8cSSatish Balay t = (low+high)/2; \ 182a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 183a30f8f8cSSatish Balay else low = t; \ 184a30f8f8cSSatish Balay } \ 185a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 186a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 187a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 188a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 189a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 190a30f8f8cSSatish Balay else *bap = value; \ 191a30f8f8cSSatish Balay goto b_noinsert; \ 192a30f8f8cSSatish Balay } \ 193a30f8f8cSSatish Balay } \ 194a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 195d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 196fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 197a30f8f8cSSatish Balay N = nrow++ - 1; \ 198a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 199580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 200580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 201580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 202a30f8f8cSSatish Balay rp[_i] = bcol; \ 203a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 204e56f5c9eSBarry Smith B->nonzerostate++;\ 205a30f8f8cSSatish Balay b_noinsert:; \ 206a30f8f8cSSatish Balay bilen[brow] = nrow; \ 207a30f8f8cSSatish Balay } 208a30f8f8cSSatish Balay 209a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 210476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 211a30f8f8cSSatish Balay */ 212dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 213a30f8f8cSSatish Balay { 214a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 215a30f8f8cSSatish Balay MatScalar value; 216ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 217dfbe8321SBarry Smith PetscErrorCode ierr; 2181302d50aSBarry Smith PetscInt i,j,row,col; 219d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 220d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 221d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 222a30f8f8cSSatish Balay 223a30f8f8cSSatish Balay /* Some Variables required in the macro */ 224a30f8f8cSSatish Balay Mat A = baij->A; 225a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2261302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 227a30f8f8cSSatish Balay MatScalar *aa =a->a; 228a30f8f8cSSatish Balay 229a30f8f8cSSatish Balay Mat B = baij->B; 230a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2311302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 232a30f8f8cSSatish Balay MatScalar *ba =b->a; 233a30f8f8cSSatish Balay 2341302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2351302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 236a30f8f8cSSatish Balay MatScalar *ap,*bap; 237a30f8f8cSSatish Balay 238a30f8f8cSSatish Balay /* for stash */ 2390298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2400298fd71SBarry Smith MatScalar *v_loc = NULL; 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay PetscFunctionBegin; 243a30f8f8cSSatish Balay if (!baij->donotstash) { 24459ffdab8SBarry Smith if (n > baij->n_loc) { 24559ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 24659ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 247785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 248785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 24926fbe8dcSKarl Rupp 25059ffdab8SBarry Smith baij->n_loc = n; 25159ffdab8SBarry Smith } 25259ffdab8SBarry Smith in_loc = baij->in_loc; 25359ffdab8SBarry Smith v_loc = baij->v_loc; 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 256a30f8f8cSSatish Balay for (i=0; i<m; i++) { 257a30f8f8cSSatish Balay if (im[i] < 0) continue; 2582515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 259e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 260a30f8f8cSSatish Balay #endif 261a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 262a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 263a30f8f8cSSatish Balay for (j=0; j<n; j++) { 26401b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 26501b2bd88SHong Zhang if (a->ignore_ltriangular) { 26601b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 26726fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 26801b2bd88SHong Zhang } 269a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 270a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 271a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 272a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 273db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 274db4deed7SKarl Rupp else value = v[i+j*m]; 275d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 276a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 277a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2782515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 279cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 280a30f8f8cSSatish Balay #endif 281a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 282a30f8f8cSSatish Balay if (mat->was_assembled) { 283a30f8f8cSSatish Balay if (!baij->colmap) { 284ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 285a30f8f8cSSatish Balay } 286a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 287a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28871730473SSatish Balay col = col - 1; 289a30f8f8cSSatish Balay #else 29071730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 291a30f8f8cSSatish Balay #endif 292a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 293ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 294a30f8f8cSSatish Balay col = in[j]; 295a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 296a30f8f8cSSatish Balay B = baij->B; 297a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 298a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 299a30f8f8cSSatish Balay ba = b->a; 30071730473SSatish Balay } else col += in[j]%bs; 301a30f8f8cSSatish Balay } else col = in[j]; 302db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 303db4deed7SKarl Rupp else value = v[i+j*m]; 304d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 305a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 306a30f8f8cSSatish Balay } 307a30f8f8cSSatish Balay } 308a30f8f8cSSatish Balay } else { /* off processor entry */ 3094cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 310a30f8f8cSSatish Balay if (!baij->donotstash) { 3115080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 312a30f8f8cSSatish Balay n_loc = 0; 313a30f8f8cSSatish Balay for (j=0; j<n; j++) { 314f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 315a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 316a30f8f8cSSatish Balay if (roworiented) { 317a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 318a30f8f8cSSatish Balay } else { 319a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay n_loc++; 322a30f8f8cSSatish Balay } 323b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 324a30f8f8cSSatish Balay } 325a30f8f8cSSatish Balay } 326a30f8f8cSSatish Balay } 327a30f8f8cSSatish Balay PetscFunctionReturn(0); 328a30f8f8cSSatish Balay } 329a30f8f8cSSatish Balay 33036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 33136bd2089SBarry Smith { 33236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 33336bd2089SBarry Smith PetscErrorCode ierr; 33436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 33536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 33636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 33736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 33836bd2089SBarry Smith const PetscScalar *value = v; 33936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 34036bd2089SBarry Smith 34136bd2089SBarry Smith PetscFunctionBegin; 34236bd2089SBarry Smith if (col < row) { 34336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 34436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 34536bd2089SBarry Smith } 34636bd2089SBarry Smith rp = aj + ai[row]; 34736bd2089SBarry Smith ap = aa + bs2*ai[row]; 34836bd2089SBarry Smith rmax = imax[row]; 34936bd2089SBarry Smith nrow = ailen[row]; 35036bd2089SBarry Smith value = v; 35136bd2089SBarry Smith low = 0; 35236bd2089SBarry Smith high = nrow; 35336bd2089SBarry Smith 35436bd2089SBarry Smith while (high-low > 7) { 35536bd2089SBarry Smith t = (low+high)/2; 35636bd2089SBarry Smith if (rp[t] > col) high = t; 35736bd2089SBarry Smith else low = t; 35836bd2089SBarry Smith } 35936bd2089SBarry Smith for (i=low; i<high; i++) { 36036bd2089SBarry Smith if (rp[i] > col) break; 36136bd2089SBarry Smith if (rp[i] == col) { 36236bd2089SBarry Smith bap = ap + bs2*i; 36336bd2089SBarry Smith if (roworiented) { 36436bd2089SBarry Smith if (is == ADD_VALUES) { 36536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 36636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 36736bd2089SBarry Smith bap[jj] += *value++; 36836bd2089SBarry Smith } 36936bd2089SBarry Smith } 37036bd2089SBarry Smith } else { 37136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37336bd2089SBarry Smith bap[jj] = *value++; 37436bd2089SBarry Smith } 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } 37736bd2089SBarry Smith } else { 37836bd2089SBarry Smith if (is == ADD_VALUES) { 37936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 38036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38136bd2089SBarry Smith *bap++ += *value++; 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 38636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38736bd2089SBarry Smith *bap++ = *value++; 38836bd2089SBarry Smith } 38936bd2089SBarry Smith } 39036bd2089SBarry Smith } 39136bd2089SBarry Smith } 39236bd2089SBarry Smith goto noinsert2; 39336bd2089SBarry Smith } 39436bd2089SBarry Smith } 39536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 39636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 39736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 39836bd2089SBarry Smith N = nrow++ - 1; high++; 39936bd2089SBarry Smith /* shift up all the later entries in this row */ 400580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 401580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 40236bd2089SBarry Smith rp[i] = col; 40336bd2089SBarry Smith bap = ap + bs2*i; 40436bd2089SBarry Smith if (roworiented) { 40536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 40636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 40736bd2089SBarry Smith bap[jj] = *value++; 40836bd2089SBarry Smith } 40936bd2089SBarry Smith } 41036bd2089SBarry Smith } else { 41136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41236bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 41336bd2089SBarry Smith *bap++ = *value++; 41436bd2089SBarry Smith } 41536bd2089SBarry Smith } 41636bd2089SBarry Smith } 41736bd2089SBarry Smith noinsert2:; 41836bd2089SBarry Smith ailen[row] = nrow; 41936bd2089SBarry Smith PetscFunctionReturn(0); 42036bd2089SBarry Smith } 42136bd2089SBarry Smith 42236bd2089SBarry Smith /* 42336bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 42436bd2089SBarry Smith */ 42536bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 42636bd2089SBarry Smith { 42736bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 42836bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 42936bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 43036bd2089SBarry Smith PetscErrorCode ierr; 43136bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 43236bd2089SBarry Smith PetscBool roworiented=a->roworiented; 43336bd2089SBarry Smith const PetscScalar *value = v; 43436bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 43536bd2089SBarry Smith 43636bd2089SBarry Smith PetscFunctionBegin; 43736bd2089SBarry Smith rp = aj + ai[row]; 43836bd2089SBarry Smith ap = aa + bs2*ai[row]; 43936bd2089SBarry Smith rmax = imax[row]; 44036bd2089SBarry Smith nrow = ailen[row]; 44136bd2089SBarry Smith low = 0; 44236bd2089SBarry Smith high = nrow; 44336bd2089SBarry Smith value = v; 44436bd2089SBarry Smith while (high-low > 7) { 44536bd2089SBarry Smith t = (low+high)/2; 44636bd2089SBarry Smith if (rp[t] > col) high = t; 44736bd2089SBarry Smith else low = t; 44836bd2089SBarry Smith } 44936bd2089SBarry Smith for (i=low; i<high; i++) { 45036bd2089SBarry Smith if (rp[i] > col) break; 45136bd2089SBarry Smith if (rp[i] == col) { 45236bd2089SBarry Smith bap = ap + bs2*i; 45336bd2089SBarry Smith if (roworiented) { 45436bd2089SBarry Smith if (is == ADD_VALUES) { 45536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 45636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 45736bd2089SBarry Smith bap[jj] += *value++; 45836bd2089SBarry Smith } 45936bd2089SBarry Smith } 46036bd2089SBarry Smith } else { 46136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46336bd2089SBarry Smith bap[jj] = *value++; 46436bd2089SBarry Smith } 46536bd2089SBarry Smith } 46636bd2089SBarry Smith } 46736bd2089SBarry Smith } else { 46836bd2089SBarry Smith if (is == ADD_VALUES) { 46936bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 47036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 47136bd2089SBarry Smith bap[jj] += value[jj]; 47236bd2089SBarry Smith } 47336bd2089SBarry Smith bap += bs; 47436bd2089SBarry Smith } 47536bd2089SBarry Smith } else { 47636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 47736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 47836bd2089SBarry Smith bap[jj] = value[jj]; 47936bd2089SBarry Smith } 48036bd2089SBarry Smith bap += bs; 48136bd2089SBarry Smith } 48236bd2089SBarry Smith } 48336bd2089SBarry Smith } 48436bd2089SBarry Smith goto noinsert2; 48536bd2089SBarry Smith } 48636bd2089SBarry Smith } 48736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 48836bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 48936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 49036bd2089SBarry Smith N = nrow++ - 1; high++; 49136bd2089SBarry Smith /* shift up all the later entries in this row */ 492580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 493580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 49436bd2089SBarry Smith rp[i] = col; 49536bd2089SBarry Smith bap = ap + bs2*i; 49636bd2089SBarry Smith if (roworiented) { 49736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 49836bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 49936bd2089SBarry Smith bap[jj] = *value++; 50036bd2089SBarry Smith } 50136bd2089SBarry Smith } 50236bd2089SBarry Smith } else { 50336bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 50536bd2089SBarry Smith *bap++ = *value++; 50636bd2089SBarry Smith } 50736bd2089SBarry Smith } 50836bd2089SBarry Smith } 50936bd2089SBarry Smith noinsert2:; 51036bd2089SBarry Smith ailen[row] = nrow; 51136bd2089SBarry Smith PetscFunctionReturn(0); 51236bd2089SBarry Smith } 51336bd2089SBarry Smith 51436bd2089SBarry Smith /* 51536bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 51636bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 51736bd2089SBarry Smith */ 518dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 519a30f8f8cSSatish Balay { 5200880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 521f15d580aSBarry Smith const MatScalar *value; 522f15d580aSBarry Smith MatScalar *barray =baij->barray; 523ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 524dfbe8321SBarry Smith PetscErrorCode ierr; 525899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 526476417e5SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 527476417e5SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 5280880e062SHong Zhang 529a30f8f8cSSatish Balay PetscFunctionBegin; 5300880e062SHong Zhang if (!barray) { 531785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 5320880e062SHong Zhang baij->barray = barray; 5330880e062SHong Zhang } 5340880e062SHong Zhang 5350880e062SHong Zhang if (roworiented) { 5360880e062SHong Zhang stepval = (n-1)*bs; 5370880e062SHong Zhang } else { 5380880e062SHong Zhang stepval = (m-1)*bs; 5390880e062SHong Zhang } 5400880e062SHong Zhang for (i=0; i<m; i++) { 5410880e062SHong Zhang if (im[i] < 0) continue; 5422515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 543bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 5440880e062SHong Zhang #endif 5450880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5460880e062SHong Zhang row = im[i] - rstart; 5470880e062SHong Zhang for (j=0; j<n; j++) { 548f3f98c53SJed Brown if (im[i] > in[j]) { 549f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 550e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 551f3f98c53SJed Brown } 5520880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5530880e062SHong Zhang if ((roworiented) && (n == 1)) { 554f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 5550880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 556f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 5570880e062SHong Zhang } else { /* Here a copy is required */ 5580880e062SHong Zhang if (roworiented) { 5590880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 5600880e062SHong Zhang } else { 5610880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 5620880e062SHong Zhang } 5630880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5640880e062SHong Zhang for (jj=0; jj<bs; jj++) { 5650880e062SHong Zhang *barray++ = *value++; 5660880e062SHong Zhang } 5670880e062SHong Zhang } 5680880e062SHong Zhang barray -=bs2; 5690880e062SHong Zhang } 5700880e062SHong Zhang 5710880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5720880e062SHong Zhang col = in[j] - cstart; 57336bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 57426fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 5752515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 576bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5770880e062SHong Zhang #endif 5780880e062SHong Zhang else { 5790880e062SHong Zhang if (mat->was_assembled) { 5800880e062SHong Zhang if (!baij->colmap) { 581ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5820880e062SHong Zhang } 5830880e062SHong Zhang 5842515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5850880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5861302d50aSBarry Smith { PetscInt data; 5870880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 588e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5890880e062SHong Zhang } 5900880e062SHong Zhang #else 591e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5920880e062SHong Zhang #endif 5930880e062SHong Zhang #endif 5940880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5950880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5960880e062SHong Zhang col = (col - 1)/bs; 5970880e062SHong Zhang #else 5980880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5990880e062SHong Zhang #endif 6000880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 601ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 6020880e062SHong Zhang col = in[j]; 6030880e062SHong Zhang } 60426fbe8dcSKarl Rupp } else col = in[j]; 60536bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 6060880e062SHong Zhang } 6070880e062SHong Zhang } 6080880e062SHong Zhang } else { 609bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 6100880e062SHong Zhang if (!baij->donotstash) { 6110880e062SHong Zhang if (roworiented) { 6120880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6130880e062SHong Zhang } else { 6140880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6150880e062SHong Zhang } 6160880e062SHong Zhang } 6170880e062SHong Zhang } 6180880e062SHong Zhang } 6190880e062SHong Zhang PetscFunctionReturn(0); 620a30f8f8cSSatish Balay } 621a30f8f8cSSatish Balay 6221302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 623a30f8f8cSSatish Balay { 624f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 6256849ba73SBarry Smith PetscErrorCode ierr; 626d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 627d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 628a30f8f8cSSatish Balay 629a30f8f8cSSatish Balay PetscFunctionBegin; 630a30f8f8cSSatish Balay for (i=0; i<m; i++) { 631e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 632e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 633a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 634a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 635a30f8f8cSSatish Balay for (j=0; j<n; j++) { 636e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 637e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 638a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 639a30f8f8cSSatish Balay col = idxn[j] - bscstart; 640c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 641a30f8f8cSSatish Balay } else { 642a30f8f8cSSatish Balay if (!baij->colmap) { 643ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 646a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 647a30f8f8cSSatish Balay data--; 648a30f8f8cSSatish Balay #else 649a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 650a30f8f8cSSatish Balay #endif 651a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 652a30f8f8cSSatish Balay else { 653a30f8f8cSSatish Balay col = data + idxn[j]%bs; 654e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay } 658f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 659a30f8f8cSSatish Balay } 660a30f8f8cSSatish Balay PetscFunctionReturn(0); 661a30f8f8cSSatish Balay } 662a30f8f8cSSatish Balay 663dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 664a30f8f8cSSatish Balay { 665a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 666dfbe8321SBarry Smith PetscErrorCode ierr; 667a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 668a30f8f8cSSatish Balay 669a30f8f8cSSatish Balay PetscFunctionBegin; 670a30f8f8cSSatish Balay if (baij->size == 1) { 671a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 672a30f8f8cSSatish Balay } else { 673a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 674785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 675a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 676a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 677a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 678a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 679b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6808f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 681a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6820b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6830b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6840b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6850b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 686899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 687d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6880b8dc8d2SHong Zhang MatScalar *v; 6890b8dc8d2SHong Zhang 690dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 691580bdb30SBarry Smith ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr); 6920b8dc8d2SHong Zhang /* Amat */ 6930b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6940b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6950b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6960b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6970b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6980b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6990b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7000b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7010b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7020b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7030b8dc8d2SHong Zhang /* non-diagonal block */ 7040b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 7050b8dc8d2SHong Zhang } 7060b8dc8d2SHong Zhang } 7070b8dc8d2SHong Zhang } 70851f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7090b8dc8d2SHong Zhang } 7100b8dc8d2SHong Zhang /* Bmat */ 7110b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 7120b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7130b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7140b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 7150b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7160b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 7170b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7180b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7190b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7200b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7210b8dc8d2SHong Zhang rsum[grow+row] += vabs; 7220b8dc8d2SHong Zhang } 7230b8dc8d2SHong Zhang } 7240b8dc8d2SHong Zhang } 72551f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7260b8dc8d2SHong Zhang } 727b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7280b8dc8d2SHong Zhang *norm = 0.0; 729d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 7300b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7310b8dc8d2SHong Zhang } 73274ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 733f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 734a30f8f8cSSatish Balay } 735a30f8f8cSSatish Balay PetscFunctionReturn(0); 736a30f8f8cSSatish Balay } 737a30f8f8cSSatish Balay 738dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 739a30f8f8cSSatish Balay { 740a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 741dfbe8321SBarry Smith PetscErrorCode ierr; 7421302d50aSBarry Smith PetscInt nstash,reallocs; 743a30f8f8cSSatish Balay 744a30f8f8cSSatish Balay PetscFunctionBegin; 74526fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 746a30f8f8cSSatish Balay 747d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 7481e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 749a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7501e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 751a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7521e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 753a30f8f8cSSatish Balay PetscFunctionReturn(0); 754a30f8f8cSSatish Balay } 755a30f8f8cSSatish Balay 756dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 757a30f8f8cSSatish Balay { 758a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 759a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 7606849ba73SBarry Smith PetscErrorCode ierr; 76113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 762e44c0bd4SBarry Smith PetscInt *row,*col; 763ace3abfcSBarry Smith PetscBool other_disassembled; 76413f74950SBarry Smith PetscMPIInt n; 765ace3abfcSBarry Smith PetscBool r1,r2,r3; 766a30f8f8cSSatish Balay MatScalar *val; 767a30f8f8cSSatish Balay 76891c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 769a30f8f8cSSatish Balay PetscFunctionBegin; 7704cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 771a30f8f8cSSatish Balay while (1) { 772a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 773a30f8f8cSSatish Balay if (!flg) break; 774a30f8f8cSSatish Balay 775a30f8f8cSSatish Balay for (i=0; i<n;) { 776a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 77726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 77826fbe8dcSKarl Rupp if (row[j] != rstart) break; 77926fbe8dcSKarl Rupp } 780a30f8f8cSSatish Balay if (j < n) ncols = j-i; 781a30f8f8cSSatish Balay else ncols = n-i; 782a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7834b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 784a30f8f8cSSatish Balay i = j; 785a30f8f8cSSatish Balay } 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 788a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 789a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 790a30f8f8cSSatish Balay restore the original flags */ 791a30f8f8cSSatish Balay r1 = baij->roworiented; 792a30f8f8cSSatish Balay r2 = a->roworiented; 79391c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 79426fbe8dcSKarl Rupp 795a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 796a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 79726fbe8dcSKarl Rupp 79891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 799a30f8f8cSSatish Balay while (1) { 800a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 801a30f8f8cSSatish Balay if (!flg) break; 802a30f8f8cSSatish Balay 803a30f8f8cSSatish Balay for (i=0; i<n;) { 804a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 80526fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 80626fbe8dcSKarl Rupp if (row[j] != rstart) break; 80726fbe8dcSKarl Rupp } 808a30f8f8cSSatish Balay if (j < n) ncols = j-i; 809a30f8f8cSSatish Balay else ncols = n-i; 8104b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 811a30f8f8cSSatish Balay i = j; 812a30f8f8cSSatish Balay } 813a30f8f8cSSatish Balay } 814a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 81526fbe8dcSKarl Rupp 816a30f8f8cSSatish Balay baij->roworiented = r1; 817a30f8f8cSSatish Balay a->roworiented = r2; 81826fbe8dcSKarl Rupp 81991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 820a30f8f8cSSatish Balay } 821a30f8f8cSSatish Balay 822a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 823a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 824a30f8f8cSSatish Balay 825a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 826a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 827a30f8f8cSSatish Balay /* 828a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 829a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 830a30f8f8cSSatish Balay */ 831a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 832b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 833a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 834ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 835a30f8f8cSSatish Balay } 836a30f8f8cSSatish Balay } 837a30f8f8cSSatish Balay 838a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 83940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 840a30f8f8cSSatish Balay } 841a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 842a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 843a30f8f8cSSatish Balay 84474ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 84526fbe8dcSKarl Rupp 846a30f8f8cSSatish Balay baij->rowvalues = 0; 8474f9cfa9eSBarry Smith 8484f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8494f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 850e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 851b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 852e56f5c9eSBarry Smith } 853a30f8f8cSSatish Balay PetscFunctionReturn(0); 854a30f8f8cSSatish Balay } 855a30f8f8cSSatish Balay 856dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 8579804daf3SBarry Smith #include <petscdraw.h> 8586849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 859a30f8f8cSSatish Balay { 860a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 861dfbe8321SBarry Smith PetscErrorCode ierr; 862d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8637da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 864ace3abfcSBarry Smith PetscBool iascii,isdraw; 865b0a32e0cSBarry Smith PetscViewer sviewer; 866f3ef73ceSBarry Smith PetscViewerFormat format; 867a30f8f8cSSatish Balay 868a30f8f8cSSatish Balay PetscFunctionBegin; 869251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 870251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 87132077d6dSBarry Smith if (iascii) { 872b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 873456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 874a30f8f8cSSatish Balay MatInfo info; 875ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 876a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8771575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 878b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 879a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 880e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 881a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 882e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 883b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8841575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 88507d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 886a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 887a30f8f8cSSatish Balay PetscFunctionReturn(0); 888fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 88977431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 890a30f8f8cSSatish Balay PetscFunctionReturn(0); 891c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 892c1490034SHong Zhang PetscFunctionReturn(0); 893a30f8f8cSSatish Balay } 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 896a30f8f8cSSatish Balay if (isdraw) { 897b0a32e0cSBarry Smith PetscDraw draw; 898ace3abfcSBarry Smith PetscBool isnull; 899b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 90045f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 90145f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 902a30f8f8cSSatish Balay } 903a30f8f8cSSatish Balay 9047da1fb6eSBarry Smith { 905a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 906a30f8f8cSSatish Balay Mat A; 90765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 90865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 909d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 910a30f8f8cSSatish Balay MatScalar *a; 9113e219373SBarry Smith const char *matname; 912a30f8f8cSSatish Balay 913f204ca49SKris Buschelman /* Should this be the same type as mat? */ 914ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 915a30f8f8cSSatish Balay if (!rank) { 916f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 917a30f8f8cSSatish Balay } else { 918f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 919a30f8f8cSSatish Balay } 920f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 9210298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 9222b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 9233bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 924a30f8f8cSSatish Balay 925a30f8f8cSSatish Balay /* copy over the A part */ 92665d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 927a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 928785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 929a30f8f8cSSatish Balay 930a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 931e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 93226fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 933a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 934e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 935a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 936dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 93726fbe8dcSKarl Rupp col++; 93826fbe8dcSKarl Rupp a += bs; 939a30f8f8cSSatish Balay } 940a30f8f8cSSatish Balay } 941a30f8f8cSSatish Balay } 942a30f8f8cSSatish Balay /* copy over the B part */ 94365d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 94465d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 945a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 946e9f7bc9eSHong Zhang 947e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 94826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 949a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 950a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 951a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 952799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 95326fbe8dcSKarl Rupp col++; 95426fbe8dcSKarl Rupp a += bs; 955a30f8f8cSSatish Balay } 956a30f8f8cSSatish Balay } 957a30f8f8cSSatish Balay } 958a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 959a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 960a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 961a30f8f8cSSatish Balay /* 962a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 963b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 964a30f8f8cSSatish Balay */ 9653f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 966ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9673e219373SBarry Smith if (!rank) { 968ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 969383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 970a30f8f8cSSatish Balay } 9713f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9721575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9736bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 974a30f8f8cSSatish Balay } 975a30f8f8cSSatish Balay PetscFunctionReturn(0); 976a30f8f8cSSatish Balay } 977a30f8f8cSSatish Balay 978d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer) 979d1654148SHong Zhang { 980d1654148SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data; 981d1654148SHong Zhang Mat_SeqSBAIJ *A = (Mat_SeqSBAIJ*)a->A->data; 982d1654148SHong Zhang Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 983d1654148SHong Zhang PetscErrorCode ierr; 984d1654148SHong Zhang PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 985d1654148SHong Zhang PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 986d1654148SHong Zhang int fd; 987d1654148SHong Zhang PetscScalar *column_values; 988d1654148SHong Zhang FILE *file; 989d1654148SHong Zhang PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 990d1654148SHong Zhang PetscInt message_count,flowcontrolcount; 991d1654148SHong Zhang 992d1654148SHong Zhang PetscFunctionBegin; 993d1654148SHong Zhang ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 994d1654148SHong Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 995d1654148SHong Zhang nz = bs2*(A->nz + B->nz); 996d1654148SHong Zhang rlen = mat->rmap->n; 997d1654148SHong Zhang ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 998d1654148SHong Zhang if (!rank) { 999d1654148SHong Zhang header[0] = MAT_FILE_CLASSID; 1000d1654148SHong Zhang header[1] = mat->rmap->N; 1001d1654148SHong Zhang header[2] = mat->cmap->N; 1002d1654148SHong Zhang 1003d1654148SHong Zhang ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1004d1654148SHong Zhang ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1005d1654148SHong Zhang /* get largest number of rows any processor has */ 1006d1654148SHong Zhang range = mat->rmap->range; 1007d1654148SHong Zhang for (i=1; i<size; i++) { 1008d1654148SHong Zhang rlen = PetscMax(rlen,range[i+1] - range[i]); 1009d1654148SHong Zhang } 1010d1654148SHong Zhang } else { 1011d1654148SHong Zhang ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1012d1654148SHong Zhang } 1013d1654148SHong Zhang 1014d1654148SHong Zhang ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr); 1015d1654148SHong Zhang /* compute lengths of each row */ 1016d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1017d1654148SHong Zhang crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 1018d1654148SHong Zhang } 1019d1654148SHong Zhang /* store the row lengths to the file */ 1020d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1021d1654148SHong Zhang if (!rank) { 1022d1654148SHong Zhang MPI_Status status; 1023d1654148SHong Zhang ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr); 1024d1654148SHong Zhang rlen = (range[1] - range[0])/bs; 1025d1654148SHong Zhang for (i=0; i<rlen; i++) { 1026d1654148SHong Zhang for (j=0; j<bs; j++) { 1027d1654148SHong Zhang row_lens[i*bs+j] = bs*crow_lens[i]; 1028d1654148SHong Zhang } 1029d1654148SHong Zhang } 1030d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1031d1654148SHong Zhang for (i=1; i<size; i++) { 1032d1654148SHong Zhang rlen = (range[i+1] - range[i])/bs; 1033d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1034d1654148SHong Zhang ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1035d1654148SHong Zhang for (k=0; k<rlen; k++) { 1036d1654148SHong Zhang for (j=0; j<bs; j++) { 1037d1654148SHong Zhang row_lens[k*bs+j] = bs*crow_lens[k]; 1038d1654148SHong Zhang } 1039d1654148SHong Zhang } 1040d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1041d1654148SHong Zhang } 1042d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1043d1654148SHong Zhang ierr = PetscFree(row_lens);CHKERRQ(ierr); 1044d1654148SHong Zhang } else { 1045d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1046d1654148SHong Zhang ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1047d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1048d1654148SHong Zhang } 1049d1654148SHong Zhang ierr = PetscFree(crow_lens);CHKERRQ(ierr); 1050d1654148SHong Zhang 1051d1654148SHong Zhang /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 1052d1654148SHong Zhang information needed to make it for each row from a block row. This does require more communication but still not more than 1053d1654148SHong Zhang the communication needed for the nonzero values */ 1054d1654148SHong Zhang nzmax = nz; /* space a largest processor needs */ 1055d1654148SHong Zhang ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1056d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr); 1057d1654148SHong Zhang cnt = 0; 1058d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1059d1654148SHong Zhang pcnt = cnt; 1060d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 1061d1654148SHong Zhang if ((col = garray[B->j[j]]) > cstart) break; 1062d1654148SHong Zhang for (l=0; l<bs; l++) { 1063d1654148SHong Zhang column_indices[cnt++] = bs*col+l; 1064d1654148SHong Zhang } 1065d1654148SHong Zhang } 1066d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1067d1654148SHong Zhang for (l=0; l<bs; l++) { 1068d1654148SHong Zhang column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1069d1654148SHong Zhang } 1070d1654148SHong Zhang } 1071d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1072d1654148SHong Zhang for (l=0; l<bs; l++) { 1073d1654148SHong Zhang column_indices[cnt++] = bs*garray[B->j[j]]+l; 1074d1654148SHong Zhang } 1075d1654148SHong Zhang } 1076d1654148SHong Zhang len = cnt - pcnt; 1077d1654148SHong Zhang for (k=1; k<bs; k++) { 1078580bdb30SBarry Smith ierr = PetscArraycpy(&column_indices[cnt],&column_indices[pcnt],len);CHKERRQ(ierr); 1079d1654148SHong Zhang cnt += len; 1080d1654148SHong Zhang } 1081d1654148SHong Zhang } 1082d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1083d1654148SHong Zhang 1084d1654148SHong Zhang /* store the columns to the file */ 1085d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1086d1654148SHong Zhang if (!rank) { 1087d1654148SHong Zhang MPI_Status status; 1088d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1089d1654148SHong Zhang for (i=1; i<size; i++) { 1090d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1091d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1092d1654148SHong Zhang ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1093d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1094d1654148SHong Zhang } 1095d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1096d1654148SHong Zhang } else { 1097d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1098d1654148SHong Zhang ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1099d1654148SHong Zhang ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1100d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1101d1654148SHong Zhang } 1102d1654148SHong Zhang ierr = PetscFree(column_indices);CHKERRQ(ierr); 1103d1654148SHong Zhang 1104d1654148SHong Zhang /* load up the numerical values */ 1105d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr); 1106d1654148SHong Zhang cnt = 0; 1107d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1108d1654148SHong Zhang rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1109d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 1110d1654148SHong Zhang if (garray[B->j[j]] > cstart) break; 1111d1654148SHong Zhang for (l=0; l<bs; l++) { 1112d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1113d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1114d1654148SHong Zhang } 1115d1654148SHong Zhang } 1116d1654148SHong Zhang cnt += bs; 1117d1654148SHong Zhang } 1118d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1119d1654148SHong Zhang for (l=0; l<bs; l++) { 1120d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1121d1654148SHong Zhang column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1122d1654148SHong Zhang } 1123d1654148SHong Zhang } 1124d1654148SHong Zhang cnt += bs; 1125d1654148SHong Zhang } 1126d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1127d1654148SHong Zhang for (l=0; l<bs; l++) { 1128d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1129d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1130d1654148SHong Zhang } 1131d1654148SHong Zhang } 1132d1654148SHong Zhang cnt += bs; 1133d1654148SHong Zhang } 1134d1654148SHong Zhang cnt += (bs-1)*rlen; 1135d1654148SHong Zhang } 1136d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1137d1654148SHong Zhang 1138d1654148SHong Zhang /* store the column values to the file */ 1139d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1140d1654148SHong Zhang if (!rank) { 1141d1654148SHong Zhang MPI_Status status; 1142d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1143d1654148SHong Zhang for (i=1; i<size; i++) { 1144d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1145d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1146d1654148SHong Zhang ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1147d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1148d1654148SHong Zhang } 1149d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1150d1654148SHong Zhang } else { 1151d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1152d1654148SHong Zhang ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1153d1654148SHong Zhang ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1154d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1155d1654148SHong Zhang } 1156d1654148SHong Zhang ierr = PetscFree(column_values);CHKERRQ(ierr); 1157d1654148SHong Zhang 1158d1654148SHong Zhang ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1159d1654148SHong Zhang if (file) { 1160d1654148SHong Zhang fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1161d1654148SHong Zhang } 1162d1654148SHong Zhang PetscFunctionReturn(0); 1163d1654148SHong Zhang } 1164d1654148SHong Zhang 1165dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 1166a30f8f8cSSatish Balay { 1167dfbe8321SBarry Smith PetscErrorCode ierr; 1168ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 1169a30f8f8cSSatish Balay 1170a30f8f8cSSatish Balay PetscFunctionBegin; 1171251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1172251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1173251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1174251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1175d1654148SHong Zhang if (iascii || isdraw || issocket) { 1176a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1177d1654148SHong Zhang } else if (isbinary) { 1178d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1179a30f8f8cSSatish Balay } 1180a30f8f8cSSatish Balay PetscFunctionReturn(0); 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay 1183dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1184a30f8f8cSSatish Balay { 1185a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1186dfbe8321SBarry Smith PetscErrorCode ierr; 1187a30f8f8cSSatish Balay 1188a30f8f8cSSatish Balay PetscFunctionBegin; 1189a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1190d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1191a30f8f8cSSatish Balay #endif 1192a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1193a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 11946bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 11956bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1196a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 11976bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1198a30f8f8cSSatish Balay #else 119905b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1200a30f8f8cSSatish Balay #endif 120105b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 12026bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 12036bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 12046bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 12056bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 12066bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 12076bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 12086bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 12096bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 12105755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 121105b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 121205b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 12136bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 12146bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 12156bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1216ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 121705b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1218a30f8f8cSSatish Balay #endif 121959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 122059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1221899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1222bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1223901853e0SKris Buschelman 1224dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1225bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1226bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1227bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1228d2c30c80SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 12296214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 12306214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 12316214f412SHong Zhang #endif 1232b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr); 1233b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr); 1234a30f8f8cSSatish Balay PetscFunctionReturn(0); 1235a30f8f8cSSatish Balay } 1236a30f8f8cSSatish Balay 1237547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1238547795f9SHong Zhang { 1239547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1240547795f9SHong Zhang PetscErrorCode ierr; 1241547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 12426de40e93SBarry Smith PetscScalar *from; 12436de40e93SBarry Smith const PetscScalar *x; 1244547795f9SHong Zhang 1245547795f9SHong Zhang PetscFunctionBegin; 1246547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1247e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1248547795f9SHong Zhang 1249547795f9SHong Zhang /* diagonal part */ 1250547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1251547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1252547795f9SHong Zhang 1253547795f9SHong Zhang /* subdiagonal part */ 1254547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1255547795f9SHong Zhang 1256547795f9SHong Zhang /* copy x into the vec slvec0 */ 1257547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 12586de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1259547795f9SHong Zhang 1260580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1261547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 12626de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1263547795f9SHong Zhang 1264547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1265547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1266547795f9SHong Zhang /* supperdiagonal part */ 1267547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1268547795f9SHong Zhang PetscFunctionReturn(0); 1269547795f9SHong Zhang } 1270547795f9SHong Zhang 1271dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1272a9d4b620SHong Zhang { 1273a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1274dfbe8321SBarry Smith PetscErrorCode ierr; 1275d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1276d9ca1df4SBarry Smith PetscScalar *from; 1277d9ca1df4SBarry Smith const PetscScalar *x; 1278a9d4b620SHong Zhang 1279a9d4b620SHong Zhang PetscFunctionBegin; 1280a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1281e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1282a9d4b620SHong Zhang 1283a9d4b620SHong Zhang /* diagonal part */ 1284a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1285fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1286a9d4b620SHong Zhang 1287a9d4b620SHong Zhang /* subdiagonal part */ 1288a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1289fc165ae2SBarry Smith 1290a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 12911ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1292d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1293a9d4b620SHong Zhang 1294580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1295fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1296d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1297fc165ae2SBarry Smith 1298fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1299ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1300a9d4b620SHong Zhang /* supperdiagonal part */ 1301a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1302a9d4b620SHong Zhang PetscFunctionReturn(0); 1303a9d4b620SHong Zhang } 1304a9d4b620SHong Zhang 1305dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1306a30f8f8cSSatish Balay { 1307a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1308dfbe8321SBarry Smith PetscErrorCode ierr; 13091302d50aSBarry Smith PetscInt nt; 1310a30f8f8cSSatish Balay 1311a30f8f8cSSatish Balay PetscFunctionBegin; 1312a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1313e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1314e7e72b3dSBarry Smith 1315a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1316e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 131765d70643SHong Zhang 1318ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1319b941877fSHong Zhang /* do diagonal part */ 1320b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1321b941877fSHong Zhang /* do supperdiagonal part */ 1322ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1323b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1324b941877fSHong Zhang /* do subdiagonal part */ 1325b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1326ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1327ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1328a30f8f8cSSatish Balay PetscFunctionReturn(0); 1329a30f8f8cSSatish Balay } 1330a30f8f8cSSatish Balay 1331dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1332a30f8f8cSSatish Balay { 1333de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1334dfbe8321SBarry Smith PetscErrorCode ierr; 1335d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1336d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1337d9ca1df4SBarry Smith const PetscScalar *x; 1338a9d4b620SHong Zhang 1339a9d4b620SHong Zhang PetscFunctionBegin; 1340a9d4b620SHong Zhang /* 1341ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 13420ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1343a9d4b620SHong Zhang */ 1344a9d4b620SHong Zhang /* diagonal part */ 1345a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 13462dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1347a9d4b620SHong Zhang 1348a9d4b620SHong Zhang /* subdiagonal part */ 1349a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1350a9d4b620SHong Zhang 1351a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 13521ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1353d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1354580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 13551ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1356a9d4b620SHong Zhang 1357ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1358d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1359ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1360a9d4b620SHong Zhang 1361a9d4b620SHong Zhang /* supperdiagonal part */ 1362a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1363a9d4b620SHong Zhang PetscFunctionReturn(0); 1364a9d4b620SHong Zhang } 1365a9d4b620SHong Zhang 1366dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1367a9d4b620SHong Zhang { 1368a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1369dfbe8321SBarry Smith PetscErrorCode ierr; 1370a30f8f8cSSatish Balay 1371a30f8f8cSSatish Balay PetscFunctionBegin; 1372ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1373b941877fSHong Zhang /* do diagonal part */ 1374b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1375b941877fSHong Zhang /* do supperdiagonal part */ 1376ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1377de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1378de8b6608SHong Zhang 1379b941877fSHong Zhang /* do subdiagonal part */ 1380a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1381ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1382ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1383a30f8f8cSSatish Balay PetscFunctionReturn(0); 1384a30f8f8cSSatish Balay } 1385a30f8f8cSSatish Balay 1386a30f8f8cSSatish Balay /* 1387a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1388a30f8f8cSSatish Balay diagonal block 1389a30f8f8cSSatish Balay */ 1390dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1391a30f8f8cSSatish Balay { 1392a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1393dfbe8321SBarry Smith PetscErrorCode ierr; 1394a30f8f8cSSatish Balay 1395a30f8f8cSSatish Balay PetscFunctionBegin; 1396e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1397a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1398a30f8f8cSSatish Balay PetscFunctionReturn(0); 1399a30f8f8cSSatish Balay } 1400a30f8f8cSSatish Balay 1401f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1402a30f8f8cSSatish Balay { 1403a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1404dfbe8321SBarry Smith PetscErrorCode ierr; 1405a30f8f8cSSatish Balay 1406a30f8f8cSSatish Balay PetscFunctionBegin; 1407f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1408f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1409a30f8f8cSSatish Balay PetscFunctionReturn(0); 1410a30f8f8cSSatish Balay } 1411a30f8f8cSSatish Balay 14121302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1413a30f8f8cSSatish Balay { 1414d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1415d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1416d0d4cfc2SHong Zhang PetscErrorCode ierr; 1417d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1418d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1419899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1420d0d4cfc2SHong Zhang 1421a30f8f8cSSatish Balay PetscFunctionBegin; 1422e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1423d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1424d0d4cfc2SHong Zhang 1425d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1426d0d4cfc2SHong Zhang /* 1427d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1428d0d4cfc2SHong Zhang */ 1429d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1430d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1431d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1432d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1433d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 143426fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1435d0d4cfc2SHong Zhang } 1436dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1437d0d4cfc2SHong Zhang } 1438d0d4cfc2SHong Zhang 1439e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1440d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1441d0d4cfc2SHong Zhang 1442d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1443d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1444d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1445d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1446d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1447d0d4cfc2SHong Zhang nztot = nzA + nzB; 1448d0d4cfc2SHong Zhang 1449d0d4cfc2SHong Zhang cmap = mat->garray; 1450d0d4cfc2SHong Zhang if (v || idx) { 1451d0d4cfc2SHong Zhang if (nztot) { 1452d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1453d0d4cfc2SHong Zhang PetscInt imark = -1; 1454d0d4cfc2SHong Zhang if (v) { 1455d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1456d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1457d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1458d0d4cfc2SHong Zhang else break; 1459d0d4cfc2SHong Zhang } 1460d0d4cfc2SHong Zhang imark = i; 1461d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1462d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1463d0d4cfc2SHong Zhang } 1464d0d4cfc2SHong Zhang if (idx) { 1465d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1466d0d4cfc2SHong Zhang if (imark > -1) { 1467d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1468d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1469d0d4cfc2SHong Zhang } 1470d0d4cfc2SHong Zhang } else { 1471d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 147226fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1473d0d4cfc2SHong Zhang else break; 1474d0d4cfc2SHong Zhang } 1475d0d4cfc2SHong Zhang imark = i; 1476d0d4cfc2SHong Zhang } 1477d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1478d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1479d0d4cfc2SHong Zhang } 1480d0d4cfc2SHong Zhang } else { 1481d0d4cfc2SHong Zhang if (idx) *idx = 0; 1482d0d4cfc2SHong Zhang if (v) *v = 0; 1483d0d4cfc2SHong Zhang } 1484d0d4cfc2SHong Zhang } 1485d0d4cfc2SHong Zhang *nz = nztot; 1486d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1487d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1488a30f8f8cSSatish Balay PetscFunctionReturn(0); 1489a30f8f8cSSatish Balay } 1490a30f8f8cSSatish Balay 14911302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1492a30f8f8cSSatish Balay { 1493a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1494a30f8f8cSSatish Balay 1495a30f8f8cSSatish Balay PetscFunctionBegin; 1496e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1497a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1498a30f8f8cSSatish Balay PetscFunctionReturn(0); 1499a30f8f8cSSatish Balay } 1500a30f8f8cSSatish Balay 1501d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1502d0d4cfc2SHong Zhang { 1503d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1504d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1505d0d4cfc2SHong Zhang 1506d0d4cfc2SHong Zhang PetscFunctionBegin; 1507d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1508d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1509d0d4cfc2SHong Zhang } 1510d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1511d0d4cfc2SHong Zhang { 1512d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1513d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1514d0d4cfc2SHong Zhang 1515d0d4cfc2SHong Zhang PetscFunctionBegin; 1516d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1517d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1518d0d4cfc2SHong Zhang } 1519d0d4cfc2SHong Zhang 152099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 152199cafbc1SBarry Smith { 152299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 152399cafbc1SBarry Smith PetscErrorCode ierr; 152499cafbc1SBarry Smith 152599cafbc1SBarry Smith PetscFunctionBegin; 152699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 152799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 152899cafbc1SBarry Smith PetscFunctionReturn(0); 152999cafbc1SBarry Smith } 153099cafbc1SBarry Smith 153199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 153299cafbc1SBarry Smith { 153399cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 153499cafbc1SBarry Smith PetscErrorCode ierr; 153599cafbc1SBarry Smith 153699cafbc1SBarry Smith PetscFunctionBegin; 153799cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 153899cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 153999cafbc1SBarry Smith PetscFunctionReturn(0); 154099cafbc1SBarry Smith } 154199cafbc1SBarry Smith 15427dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 154336032a97SHong Zhang Input: isrow - distributed(parallel), 154436032a97SHong Zhang iscol_local - locally owned (seq) 154536032a97SHong Zhang */ 154636032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 15478f46ffcaSHong Zhang { 15488f46ffcaSHong Zhang PetscErrorCode ierr; 15498f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 15508f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 155136032a97SHong Zhang 155236032a97SHong Zhang PetscFunctionBegin; 15538f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 15548f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 15551098a8e8SHong Zhang if (sz1 > sz2) { 15561098a8e8SHong Zhang *flg = PETSC_FALSE; 15571098a8e8SHong Zhang PetscFunctionReturn(0); 15581098a8e8SHong Zhang } 15598f46ffcaSHong Zhang 15608f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 15618f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 15628f46ffcaSHong Zhang 15638f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 15648f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 1565580bdb30SBarry Smith ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr); 1566580bdb30SBarry Smith ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr); 15678f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 15688f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 15698f46ffcaSHong Zhang 15708f46ffcaSHong Zhang nmatch=0; 15718f46ffcaSHong Zhang k = 0; 15728f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 15738f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 15748f46ffcaSHong Zhang if (a1[i] == a2[j]) { 15758f46ffcaSHong Zhang k = j; nmatch++; 15768f46ffcaSHong Zhang break; 15778f46ffcaSHong Zhang } 15788f46ffcaSHong Zhang } 15798f46ffcaSHong Zhang } 15808f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 15818f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 15828f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 15838f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 15841098a8e8SHong Zhang if (nmatch < sz1) { 15851098a8e8SHong Zhang *flg = PETSC_FALSE; 15861098a8e8SHong Zhang } else { 15871098a8e8SHong Zhang *flg = PETSC_TRUE; 15881098a8e8SHong Zhang } 158936032a97SHong Zhang PetscFunctionReturn(0); 15908f46ffcaSHong Zhang } 159136032a97SHong Zhang 15927dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 159336032a97SHong Zhang { 159436032a97SHong Zhang PetscErrorCode ierr; 159536032a97SHong Zhang IS iscol_local; 159636032a97SHong Zhang PetscInt csize; 159736032a97SHong Zhang PetscBool isequal; 159836032a97SHong Zhang 159936032a97SHong Zhang PetscFunctionBegin; 160036032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 160136032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 160236032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 160336032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 160436032a97SHong Zhang } else { 160536032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 160636032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 160736032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 16088f46ffcaSHong Zhang } 16098f46ffcaSHong Zhang 16107dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 16117dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 16128f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 16138f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 16148f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 16158f46ffcaSHong Zhang } 16168f46ffcaSHong Zhang PetscFunctionReturn(0); 16178f46ffcaSHong Zhang } 16188f46ffcaSHong Zhang 1619dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1620a30f8f8cSSatish Balay { 1621a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1622dfbe8321SBarry Smith PetscErrorCode ierr; 1623a30f8f8cSSatish Balay 1624a30f8f8cSSatish Balay PetscFunctionBegin; 1625a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1626a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1627a30f8f8cSSatish Balay PetscFunctionReturn(0); 1628a30f8f8cSSatish Balay } 1629a30f8f8cSSatish Balay 1630dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1631a30f8f8cSSatish Balay { 1632a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1633a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1634dfbe8321SBarry Smith PetscErrorCode ierr; 1635a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1636a30f8f8cSSatish Balay 1637a30f8f8cSSatish Balay PetscFunctionBegin; 1638d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 163926fbe8dcSKarl Rupp 1640a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 164126fbe8dcSKarl Rupp 1642a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1643a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 164426fbe8dcSKarl Rupp 1645a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 164626fbe8dcSKarl Rupp 1647a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1648a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1649a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1650a30f8f8cSSatish Balay info->nz_used = isend[0]; 1651a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1652a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1653a30f8f8cSSatish Balay info->memory = isend[3]; 1654a30f8f8cSSatish Balay info->mallocs = isend[4]; 1655a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1656b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 165726fbe8dcSKarl Rupp 1658a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1659a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1660a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1661a30f8f8cSSatish Balay info->memory = irecv[3]; 1662a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1663a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1664b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 166526fbe8dcSKarl Rupp 1666a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1667a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1668a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1669a30f8f8cSSatish Balay info->memory = irecv[3]; 1670a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1671f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1672a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1673a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1674a30f8f8cSSatish Balay info->factor_mallocs = 0; 1675a30f8f8cSSatish Balay PetscFunctionReturn(0); 1676a30f8f8cSSatish Balay } 1677a30f8f8cSSatish Balay 1678ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1679a30f8f8cSSatish Balay { 1680a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1681d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1682dfbe8321SBarry Smith PetscErrorCode ierr; 1683a30f8f8cSSatish Balay 1684a30f8f8cSSatish Balay PetscFunctionBegin; 1685e98b92d7SKris Buschelman switch (op) { 1686512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1687e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 168828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1689a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1690c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1691e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 169243674050SBarry Smith MatCheckPreallocated(A,1); 16934e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16944e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1695e98b92d7SKris Buschelman break; 1696e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 169743674050SBarry Smith MatCheckPreallocated(A,1); 16984e0d8c25SBarry Smith a->roworiented = flg; 169926fbe8dcSKarl Rupp 17004e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 17014e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1702e98b92d7SKris Buschelman break; 17034e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1704071fcb05SBarry Smith case MAT_SORTED_FULL: 1705290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1706e98b92d7SKris Buschelman break; 1707e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 17084e0d8c25SBarry Smith a->donotstash = flg; 1709e98b92d7SKris Buschelman break; 1710e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 17114e0d8c25SBarry Smith a->ht_flag = flg; 1712e98b92d7SKris Buschelman break; 17139a4540c5SBarry Smith case MAT_HERMITIAN: 171443674050SBarry Smith MatCheckPreallocated(A,1); 1715e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1716eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 17170f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1718547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 17190f2140c7SStefano Zampini #endif 1720eeffb40dSHong Zhang break; 1721ffa07934SHong Zhang case MAT_SPD: 1722ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1723ffa07934SHong Zhang A->spd = flg; 1724ffa07934SHong Zhang if (flg) { 1725ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1726ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1727ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1728ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1729ffa07934SHong Zhang } 1730ffa07934SHong Zhang break; 173177e54ba9SKris Buschelman case MAT_SYMMETRIC: 173243674050SBarry Smith MatCheckPreallocated(A,1); 1733eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1734eeffb40dSHong Zhang break; 173577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 173643674050SBarry Smith MatCheckPreallocated(A,1); 1737eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1738eeffb40dSHong Zhang break; 17399a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1740e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1741290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 174277e54ba9SKris Buschelman break; 1743d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 17444e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1745d0d4cfc2SHong Zhang break; 1746d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 17474e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1748d0d4cfc2SHong Zhang break; 1749d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 17504e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1751d0d4cfc2SHong Zhang break; 1752e98b92d7SKris Buschelman default: 1753e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1754a30f8f8cSSatish Balay } 1755a30f8f8cSSatish Balay PetscFunctionReturn(0); 1756a30f8f8cSSatish Balay } 1757a30f8f8cSSatish Balay 1758fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1759a30f8f8cSSatish Balay { 1760dfbe8321SBarry Smith PetscErrorCode ierr; 17616e111a19SKarl Rupp 1762a30f8f8cSSatish Balay PetscFunctionBegin; 1763cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1764999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1765cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 1766cf37664fSBarry Smith ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1767fc4dec0aSBarry Smith } 17688115998fSBarry Smith PetscFunctionReturn(0); 1769a30f8f8cSSatish Balay } 1770a30f8f8cSSatish Balay 1771dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1772a30f8f8cSSatish Balay { 1773a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1774a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1775dfbe8321SBarry Smith PetscErrorCode ierr; 17765e90f9d9SHong Zhang PetscInt nv,m,n; 1777ace3abfcSBarry Smith PetscBool flg; 1778a30f8f8cSSatish Balay 1779a30f8f8cSSatish Balay PetscFunctionBegin; 1780a30f8f8cSSatish Balay if (ll != rr) { 1781b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1782e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1783a30f8f8cSSatish Balay } 1784b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1785b3bf805bSHong Zhang 17865e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1787e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1788b3bf805bSHong Zhang 17895e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1790e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 17915e90f9d9SHong Zhang 1792ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17935e90f9d9SHong Zhang 17945e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 17950298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 17965e90f9d9SHong Zhang 17975e90f9d9SHong Zhang /* scale the diagonal part */ 1798a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1799a30f8f8cSSatish Balay 18005e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1801ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18020298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1803a30f8f8cSSatish Balay PetscFunctionReturn(0); 1804a30f8f8cSSatish Balay } 1805a30f8f8cSSatish Balay 1806dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1807a30f8f8cSSatish Balay { 1808f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1809dfbe8321SBarry Smith PetscErrorCode ierr; 1810a30f8f8cSSatish Balay 1811a30f8f8cSSatish Balay PetscFunctionBegin; 1812a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1813a30f8f8cSSatish Balay PetscFunctionReturn(0); 1814a30f8f8cSSatish Balay } 1815a30f8f8cSSatish Balay 18166849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1817a30f8f8cSSatish Balay 1818ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1819a30f8f8cSSatish Balay { 1820a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1821a30f8f8cSSatish Balay Mat a,b,c,d; 1822ace3abfcSBarry Smith PetscBool flg; 1823dfbe8321SBarry Smith PetscErrorCode ierr; 1824a30f8f8cSSatish Balay 1825a30f8f8cSSatish Balay PetscFunctionBegin; 1826a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1827a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1828a30f8f8cSSatish Balay 1829a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1830abc0a331SBarry Smith if (flg) { 1831a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1832a30f8f8cSSatish Balay } 1833b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1834a30f8f8cSSatish Balay PetscFunctionReturn(0); 1835a30f8f8cSSatish Balay } 1836a30f8f8cSSatish Balay 18373c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 18383c896bc6SHong Zhang { 18393c896bc6SHong Zhang PetscErrorCode ierr; 18404c7a3774SStefano Zampini PetscBool isbaij; 18413c896bc6SHong Zhang 18423c896bc6SHong Zhang PetscFunctionBegin; 18434c7a3774SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr); 18444c7a3774SStefano Zampini if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 18453c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18463c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1847d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 18483c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1849d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 18503c896bc6SHong Zhang } else { 18514c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 18524c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 18534c7a3774SStefano Zampini 18543c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18553c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18563c896bc6SHong Zhang } 1857cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 18583c896bc6SHong Zhang PetscFunctionReturn(0); 18593c896bc6SHong Zhang } 18603c896bc6SHong Zhang 18614994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1862273d9f13SBarry Smith { 1863dfbe8321SBarry Smith PetscErrorCode ierr; 1864273d9f13SBarry Smith 1865273d9f13SBarry Smith PetscFunctionBegin; 1866535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1867273d9f13SBarry Smith PetscFunctionReturn(0); 1868273d9f13SBarry Smith } 1869a5e6ed63SBarry Smith 18704fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18714fe895cdSHong Zhang { 18724fe895cdSHong Zhang PetscErrorCode ierr; 18734fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 18744fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18754fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 18764fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 18774fe895cdSHong Zhang 18784fe895cdSHong Zhang PetscFunctionBegin; 18794fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18804fe895cdSHong Zhang PetscScalar alpha = a; 18814fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 18824fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1883c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 18848b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 18854fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 18864fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1887c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 18888b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1889a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1890ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1891ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1892ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1893ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 18944fe895cdSHong Zhang } else { 18954de5dceeSHong Zhang Mat B; 18964de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18974de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1898d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 18994de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 19004de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 19014de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 19024de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 19034de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 19044de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 19054de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 19064de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 19074de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 19084de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 19094de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 19104de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 191128be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 19124de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 19134de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1914d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 19154de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 19164fe895cdSHong Zhang } 19174fe895cdSHong Zhang PetscFunctionReturn(0); 19184fe895cdSHong Zhang } 19194fe895cdSHong Zhang 19207dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1921a5e6ed63SBarry Smith { 19226849ba73SBarry Smith PetscErrorCode ierr; 19231302d50aSBarry Smith PetscInt i; 1924afebec48SHong Zhang PetscBool flg; 1925a5e6ed63SBarry Smith 19266849ba73SBarry Smith PetscFunctionBegin; 19277dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1928a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1929a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1930afebec48SHong Zhang if (!flg) { 1931b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1932a5e6ed63SBarry Smith } 19334dcd73b1SHong Zhang } 1934a5e6ed63SBarry Smith PetscFunctionReturn(0); 1935a5e6ed63SBarry Smith } 1936a5e6ed63SBarry Smith 19377d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 19387d68702bSBarry Smith { 19397d68702bSBarry Smith PetscErrorCode ierr; 19407d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 19416f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 19427d68702bSBarry Smith 19437d68702bSBarry Smith PetscFunctionBegin; 19446f33a894SBarry Smith if (!Y->preallocated) { 19457d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 19466f33a894SBarry Smith } else if (!aij->nz) { 1947b83222d8SBarry Smith PetscInt nonew = aij->nonew; 19486f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1949b83222d8SBarry Smith aij->nonew = nonew; 19507d68702bSBarry Smith } 19517d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 19527d68702bSBarry Smith PetscFunctionReturn(0); 19537d68702bSBarry Smith } 19547d68702bSBarry Smith 19553b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 19563b49f96aSBarry Smith { 19573b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 19583b49f96aSBarry Smith PetscErrorCode ierr; 19593b49f96aSBarry Smith 19603b49f96aSBarry Smith PetscFunctionBegin; 19613b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 19623b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 19633b49f96aSBarry Smith if (d) { 19643b49f96aSBarry Smith PetscInt rstart; 19653b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 19663b49f96aSBarry Smith *d += rstart/A->rmap->bs; 19673b49f96aSBarry Smith 19683b49f96aSBarry Smith } 19693b49f96aSBarry Smith PetscFunctionReturn(0); 19703b49f96aSBarry Smith } 19713b49f96aSBarry Smith 1972a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1973a5b7ff6bSBarry Smith { 1974a5b7ff6bSBarry Smith PetscFunctionBegin; 1975a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1976a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1977a5b7ff6bSBarry Smith } 19783b49f96aSBarry Smith 1979a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 19803964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1981a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1982a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1983a9d4b620SHong Zhang MatMult_MPISBAIJ, 198497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1985431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1986431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1987a30f8f8cSSatish Balay 0, 1988a30f8f8cSSatish Balay 0, 1989a30f8f8cSSatish Balay 0, 199097304618SKris Buschelman /* 10*/ 0, 1991a30f8f8cSSatish Balay 0, 1992a30f8f8cSSatish Balay 0, 199341f059aeSBarry Smith MatSOR_MPISBAIJ, 1994a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 199597304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1996a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1997a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1998a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1999a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 200097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 2001a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 2002a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 2003a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 2004d519adbfSMatthew Knepley /* 24*/ 0, 2005a30f8f8cSSatish Balay 0, 2006a30f8f8cSSatish Balay 0, 2007a30f8f8cSSatish Balay 0, 2008a30f8f8cSSatish Balay 0, 20094994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 2010b5df2d14SHong Zhang 0, 2011a30f8f8cSSatish Balay 0, 2012a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 2013a30f8f8cSSatish Balay 0, 2014d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 2015a30f8f8cSSatish Balay 0, 2016a30f8f8cSSatish Balay 0, 2017a30f8f8cSSatish Balay 0, 2018a30f8f8cSSatish Balay 0, 2019d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 20207dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 2021d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 2022a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 20233c896bc6SHong Zhang MatCopy_MPISBAIJ, 2024d519adbfSMatthew Knepley /* 44*/ 0, 2025a30f8f8cSSatish Balay MatScale_MPISBAIJ, 20267d68702bSBarry Smith MatShift_MPISBAIJ, 2027a30f8f8cSSatish Balay 0, 2028a30f8f8cSSatish Balay 0, 2029f73d5cc4SBarry Smith /* 49*/ 0, 2030a30f8f8cSSatish Balay 0, 2031a30f8f8cSSatish Balay 0, 2032a30f8f8cSSatish Balay 0, 2033a30f8f8cSSatish Balay 0, 2034d519adbfSMatthew Knepley /* 54*/ 0, 2035a30f8f8cSSatish Balay 0, 2036a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 2037a30f8f8cSSatish Balay 0, 2038a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 20397dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 2040a30f8f8cSSatish Balay 0, 2041a30f8f8cSSatish Balay 0, 2042357abbc8SBarry Smith 0, 204324d5174aSHong Zhang 0, 2044d519adbfSMatthew Knepley /* 64*/ 0, 204524d5174aSHong Zhang 0, 204624d5174aSHong Zhang 0, 204724d5174aSHong Zhang 0, 204824d5174aSHong Zhang 0, 2049d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 205024d5174aSHong Zhang 0, 2051*28d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 205297304618SKris Buschelman 0, 205397304618SKris Buschelman 0, 2054d519adbfSMatthew Knepley /* 74*/ 0, 205597304618SKris Buschelman 0, 205697304618SKris Buschelman 0, 205797304618SKris Buschelman 0, 205897304618SKris Buschelman 0, 2059d519adbfSMatthew Knepley /* 79*/ 0, 206097304618SKris Buschelman 0, 206197304618SKris Buschelman 0, 206297304618SKris Buschelman 0, 20635bba2384SShri Abhyankar MatLoad_MPISBAIJ, 2064d519adbfSMatthew Knepley /* 84*/ 0, 2065865e5f61SKris Buschelman 0, 2066865e5f61SKris Buschelman 0, 2067865e5f61SKris Buschelman 0, 2068865e5f61SKris Buschelman 0, 2069d519adbfSMatthew Knepley /* 89*/ 0, 2070865e5f61SKris Buschelman 0, 2071865e5f61SKris Buschelman 0, 2072865e5f61SKris Buschelman 0, 2073865e5f61SKris Buschelman 0, 2074d519adbfSMatthew Knepley /* 94*/ 0, 2075865e5f61SKris Buschelman 0, 2076865e5f61SKris Buschelman 0, 207799cafbc1SBarry Smith 0, 207899cafbc1SBarry Smith 0, 2079d519adbfSMatthew Knepley /* 99*/ 0, 208099cafbc1SBarry Smith 0, 208199cafbc1SBarry Smith 0, 208299cafbc1SBarry Smith 0, 208399cafbc1SBarry Smith 0, 2084d519adbfSMatthew Knepley /*104*/ 0, 208599cafbc1SBarry Smith MatRealPart_MPISBAIJ, 2086d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 2087d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 208895936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 208995936485SShri Abhyankar /*109*/ 0, 209095936485SShri Abhyankar 0, 209195936485SShri Abhyankar 0, 209295936485SShri Abhyankar 0, 20933b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 209495936485SShri Abhyankar /*114*/ 0, 209595936485SShri Abhyankar 0, 209695936485SShri Abhyankar 0, 209795936485SShri Abhyankar 0, 209895936485SShri Abhyankar 0, 209995936485SShri Abhyankar /*119*/ 0, 210095936485SShri Abhyankar 0, 210195936485SShri Abhyankar 0, 21023964eb88SJed Brown 0, 21033964eb88SJed Brown 0, 21043964eb88SJed Brown /*124*/ 0, 21053964eb88SJed Brown 0, 21063964eb88SJed Brown 0, 21073964eb88SJed Brown 0, 21083964eb88SJed Brown 0, 21093964eb88SJed Brown /*129*/ 0, 21103964eb88SJed Brown 0, 21113964eb88SJed Brown 0, 21123964eb88SJed Brown 0, 21133964eb88SJed Brown 0, 21143964eb88SJed Brown /*134*/ 0, 21153964eb88SJed Brown 0, 21163964eb88SJed Brown 0, 21173964eb88SJed Brown 0, 21183964eb88SJed Brown 0, 211946533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2120f9426fe0SMark Adams 0, 212159f5e6ceSHong Zhang 0, 212259f5e6ceSHong Zhang 0, 212359f5e6ceSHong Zhang 0, 212459f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 212599cafbc1SBarry Smith }; 2126a30f8f8cSSatish Balay 2127b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2128a23d5eceSKris Buschelman { 2129476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 2130dfbe8321SBarry Smith PetscErrorCode ierr; 2131535b19f3SBarry Smith PetscInt i,mbs,Mbs; 21325d2a9ed1SStefano Zampini PetscMPIInt size; 2133a23d5eceSKris Buschelman 2134a23d5eceSKris Buschelman PetscFunctionBegin; 213533d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 213626283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 213726283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2138e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2139476417e5SBarry Smith if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N); 2140476417e5SBarry Smith if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n); 2141899cda47SBarry Smith 2142d0f46423SBarry Smith mbs = B->rmap->n/bs; 2143d0f46423SBarry Smith Mbs = B->rmap->N/bs; 2144c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 2145a23d5eceSKris Buschelman 2146d0f46423SBarry Smith B->rmap->bs = bs; 2147a23d5eceSKris Buschelman b->bs2 = bs*bs; 2148a23d5eceSKris Buschelman b->mbs = mbs; 2149a23d5eceSKris Buschelman b->Mbs = Mbs; 2150de64b629SHong Zhang b->nbs = B->cmap->n/bs; 2151de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 2152a23d5eceSKris Buschelman 2153a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2154d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2155a23d5eceSKris Buschelman } 2156d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2157d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2158a23d5eceSKris Buschelman 2159d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2160d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2161a23d5eceSKris Buschelman 2162cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2163cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2164cb7b82ddSBarry Smith #else 2165cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2166cb7b82ddSBarry Smith #endif 2167cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2168cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2169cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2170cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 2171cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 2172cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 2173cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 2174cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 2175cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 2176cb7b82ddSBarry Smith 2177cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 21785d2a9ed1SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 2179cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2180cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 21815d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 2182cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2183cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2184cb7b82ddSBarry Smith 2185526dfc15SBarry Smith if (!B->preallocated) { 2186f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2187d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 21889c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 21893bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2190ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2191526dfc15SBarry Smith } 2192a23d5eceSKris Buschelman 2193526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2194526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 219526fbe8dcSKarl Rupp 2196526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2197cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2198cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2199a23d5eceSKris Buschelman PetscFunctionReturn(0); 2200a23d5eceSKris Buschelman } 2201a23d5eceSKris Buschelman 2202dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2203dfb205c3SBarry Smith { 220402106b30SBarry Smith PetscInt m,rstart,cend; 22050cd7f59aSBarry Smith PetscInt i,j,d,nz,bd, nz_max=0,*d_nnz=0,*o_nnz=0; 2206dfb205c3SBarry Smith const PetscInt *JJ =0; 2207dfb205c3SBarry Smith PetscScalar *values=0; 2208bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented; 2209dfb205c3SBarry Smith PetscErrorCode ierr; 22103bd0feecSPierre Jolivet PetscBool nooffprocentries; 2211dfb205c3SBarry Smith 2212dfb205c3SBarry Smith PetscFunctionBegin; 2213ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2214dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2215dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2216dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2217dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2218e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2219dfb205c3SBarry Smith m = B->rmap->n/bs; 2220dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2221dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2222dfb205c3SBarry Smith 2223dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2224dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2225dfb205c3SBarry Smith for (i=0; i<m; i++) { 2226dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2227dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 22280cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2229dfb205c3SBarry Smith JJ = jj + ii[i]; 22300cd7f59aSBarry Smith bd = 0; 2231dfb205c3SBarry Smith for (j=0; j<nz; j++) { 22320cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2233dfb205c3SBarry Smith JJ++; 22340cd7f59aSBarry Smith bd++; 2235dfb205c3SBarry Smith } 2236dfb205c3SBarry Smith d = 0; 2237dfb205c3SBarry Smith for (; j<nz; j++) { 2238dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2239dfb205c3SBarry Smith d++; 2240dfb205c3SBarry Smith } 2241dfb205c3SBarry Smith d_nnz[i] = d; 22420cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 22430cd7f59aSBarry Smith nz = nz - bd; 22440cd7f59aSBarry Smith nz_max = PetscMax(nz_max,nz); 2245dfb205c3SBarry Smith } 2246dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2247bb80cfbbSStefano Zampini ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 2248dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2249dfb205c3SBarry Smith 2250dfb205c3SBarry Smith values = (PetscScalar*)V; 2251dfb205c3SBarry Smith if (!values) { 2252580bdb30SBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2253dfb205c3SBarry Smith } 2254dfb205c3SBarry Smith for (i=0; i<m; i++) { 2255dfb205c3SBarry Smith PetscInt row = i + rstart; 2256dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2257dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2258bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2259dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2260dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2261bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2262bb80cfbbSStefano Zampini PetscInt j; 22630cd7f59aSBarry Smith for (j=0; j<ncols; j++) { 22640cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 22650cd7f59aSBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 22660cd7f59aSBarry Smith } 22670cd7f59aSBarry Smith } 2268dfb205c3SBarry Smith } 2269dfb205c3SBarry Smith 2270dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 22713bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 22723bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 2273dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2274dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 22753bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 22763bd0feecSPierre Jolivet 22777827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2278dfb205c3SBarry Smith PetscFunctionReturn(0); 2279dfb205c3SBarry Smith } 2280dfb205c3SBarry Smith 22810bad9183SKris Buschelman /*MC 2282fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2283828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2284828413b8SBarry Smith the matrix is stored. 2285828413b8SBarry Smith 2286828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2287828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 22880bad9183SKris Buschelman 22890bad9183SKris Buschelman Options Database Keys: 22900bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 22910bad9183SKris Buschelman 2292476417e5SBarry Smith Notes: 2293476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2294476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2295476417e5SBarry Smith 22960bad9183SKris Buschelman Level: beginner 22970bad9183SKris Buschelman 2298476417e5SBarry Smith .seealso: MatCreateMPISBAIJ(), MATSEQSBAIJ, MatType 22990bad9183SKris Buschelman M*/ 23000bad9183SKris Buschelman 23018cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2302b5df2d14SHong Zhang { 2303b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2304dfbe8321SBarry Smith PetscErrorCode ierr; 230594ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2306b5df2d14SHong Zhang 2307b5df2d14SHong Zhang PetscFunctionBegin; 2308b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2309b0a32e0cSBarry Smith B->data = (void*)b; 2310b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2311b5df2d14SHong Zhang 2312b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2313b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2314b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2315b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 231626fbe8dcSKarl Rupp 2317ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2318ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2319b5df2d14SHong Zhang 2320b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2321854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2322b5df2d14SHong Zhang 2323b5df2d14SHong Zhang /* build cache for off array entries formed */ 2324ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 232526fbe8dcSKarl Rupp 2326b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 23270298fd71SBarry Smith b->colmap = NULL; 23280298fd71SBarry Smith b->garray = NULL; 2329b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2330b5df2d14SHong Zhang 2331b5df2d14SHong Zhang /* stuff used in block assembly */ 2332b5df2d14SHong Zhang b->barray = 0; 2333b5df2d14SHong Zhang 2334b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2335b5df2d14SHong Zhang b->lvec = 0; 2336b5df2d14SHong Zhang b->Mvctx = 0; 233740781036SHong Zhang b->slvec0 = 0; 233840781036SHong Zhang b->slvec0b = 0; 233940781036SHong Zhang b->slvec1 = 0; 234040781036SHong Zhang b->slvec1a = 0; 234140781036SHong Zhang b->slvec1b = 0; 234240781036SHong Zhang b->sMvctx = 0; 2343b5df2d14SHong Zhang 2344b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2345b5df2d14SHong Zhang b->rowindices = 0; 2346b5df2d14SHong Zhang b->rowvalues = 0; 2347b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2348b5df2d14SHong Zhang 2349b5df2d14SHong Zhang /* hash table stuff */ 2350b5df2d14SHong Zhang b->ht = 0; 2351b5df2d14SHong Zhang b->hd = 0; 2352b5df2d14SHong Zhang b->ht_size = 0; 2353b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2354b5df2d14SHong Zhang b->ht_fact = 0; 2355b5df2d14SHong Zhang b->ht_total_ct = 0; 2356b5df2d14SHong Zhang b->ht_insert_ct = 0; 2357b5df2d14SHong Zhang 23587dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 23597a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 23607a868f3eSHong Zhang 236159ffdab8SBarry Smith b->in_loc = 0; 236259ffdab8SBarry Smith b->v_loc = 0; 236359ffdab8SBarry Smith b->n_loc = 0; 236494ae4db5SBarry Smith 2365bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2366bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2367bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2368bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 23696214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 23706214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 23716214f412SHong Zhang #endif 2372*28d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 2373*28d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 2374aa5a9175SDahai Guo 237523ce1328SBarry Smith B->symmetric = PETSC_TRUE; 237623ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 237723ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 237823ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 23799899f194SHong Zhang B->symmetric_eternal = PETSC_TRUE; 238026fbe8dcSKarl Rupp 238113647f61SHong Zhang B->hermitian = PETSC_FALSE; 238213647f61SHong Zhang B->hermitian_set = PETSC_FALSE; 238313647f61SHong Zhang 238417667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 238594ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 238694ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 238794ae4db5SBarry Smith if (flg) { 238894ae4db5SBarry Smith PetscReal fact = 1.39; 238994ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 239094ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 239194ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 239294ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 239394ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 239494ae4db5SBarry Smith } 239594ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2396b5df2d14SHong Zhang PetscFunctionReturn(0); 2397b5df2d14SHong Zhang } 2398b5df2d14SHong Zhang 2399209238afSKris Buschelman /*MC 2400002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2401209238afSKris Buschelman 2402209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2403209238afSKris Buschelman and MATMPISBAIJ otherwise. 2404209238afSKris Buschelman 2405209238afSKris Buschelman Options Database Keys: 2406209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2407209238afSKris Buschelman 2408209238afSKris Buschelman Level: beginner 2409209238afSKris Buschelman 2410209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2411209238afSKris Buschelman M*/ 2412209238afSKris Buschelman 2413b5df2d14SHong Zhang /*@C 2414b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2415b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2416b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2417b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2418b5df2d14SHong Zhang 2419b5df2d14SHong Zhang Collective on Mat 2420b5df2d14SHong Zhang 2421b5df2d14SHong Zhang Input Parameters: 24221c4f3114SJed Brown + B - the matrix 2423bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2424bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2425b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2426b5df2d14SHong Zhang submatrix (same for all local rows) 2427b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 24286d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 24290298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 243095742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2431b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2432b5df2d14SHong Zhang submatrix (same for all local rows). 2433b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2434c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 24350298fd71SBarry Smith (possibly different for each block row) or NULL. 2436b5df2d14SHong Zhang 2437b5df2d14SHong Zhang 2438b5df2d14SHong Zhang Options Database Keys: 2439a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2440b5df2d14SHong Zhang block calculations (much slower) 2441a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2442b5df2d14SHong Zhang 2443b5df2d14SHong Zhang Notes: 2444b5df2d14SHong Zhang 2445b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2446b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2447b5df2d14SHong Zhang 244849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 244949a6f317SBarry Smith 2450b5df2d14SHong Zhang Storage Information: 2451b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2452b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2453b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2454b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2455b5df2d14SHong Zhang 2456b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2457b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 24580298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2459b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2460b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2461b5df2d14SHong Zhang 2462aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2463aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2464aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2465aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2466aa95bbe8SBarry Smith 2467b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2468b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2469b5df2d14SHong Zhang 2470b5df2d14SHong Zhang .vb 2471b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2472a4b1a0f6SJed Brown -------------------------- 2473c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2474c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2475c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2476a4b1a0f6SJed Brown -------------------------- 2477b5df2d14SHong Zhang .ve 2478b5df2d14SHong Zhang 2479b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2480b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 24816d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24826d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2483b5df2d14SHong Zhang 24846d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 24856d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2486c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2487c2fc9fa9SBarry Smith 2488b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2489b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2490b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2491b5df2d14SHong Zhang matrices. 2492b5df2d14SHong Zhang 2493b5df2d14SHong Zhang Level: intermediate 2494b5df2d14SHong Zhang 2495ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2496b5df2d14SHong Zhang @*/ 24977087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2498b5df2d14SHong Zhang { 24994ac538c5SBarry Smith PetscErrorCode ierr; 2500b5df2d14SHong Zhang 2501b5df2d14SHong Zhang PetscFunctionBegin; 25026ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 25036ba663aaSJed Brown PetscValidType(B,1); 25046ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 25054ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2506b5df2d14SHong Zhang PetscFunctionReturn(0); 2507b5df2d14SHong Zhang } 2508b5df2d14SHong Zhang 2509a30f8f8cSSatish Balay /*@C 251069b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2511a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2512a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2513a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2514a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2515a30f8f8cSSatish Balay 2516d083f849SBarry Smith Collective 2517a30f8f8cSSatish Balay 2518a30f8f8cSSatish Balay Input Parameters: 2519a30f8f8cSSatish Balay + comm - MPI communicator 2520bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2521bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2522a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2523a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2524a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2525a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2526a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2527a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2528a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2529a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2530a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2531a30f8f8cSSatish Balay submatrix (same for all local rows) 2532a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 25336d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 25340298fd71SBarry Smith (possibly different for each block block row) or NULL. 253595742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 253695742e49SBarry Smith set its value even if it is zero. 2537a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2538a30f8f8cSSatish Balay submatrix (same for all local rows). 2539a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2540a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 25410298fd71SBarry Smith each block row) or NULL. 2542a30f8f8cSSatish Balay 2543a30f8f8cSSatish Balay Output Parameter: 2544a30f8f8cSSatish Balay . A - the matrix 2545a30f8f8cSSatish Balay 2546a30f8f8cSSatish Balay Options Database Keys: 2547a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2548a30f8f8cSSatish Balay block calculations (much slower) 2549a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2550a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2551a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2552a30f8f8cSSatish Balay 2553175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2554f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2555175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2556175b88e8SBarry Smith 2557a30f8f8cSSatish Balay Notes: 2558d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 25596d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2560d1be2dadSMatthew Knepley 2561a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2562a30f8f8cSSatish Balay (possibly both). 2563a30f8f8cSSatish Balay 2564a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2565a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2566a30f8f8cSSatish Balay 256749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 256849a6f317SBarry Smith 2569a30f8f8cSSatish Balay Storage Information: 2570a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2571a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2572a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2573a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2574a30f8f8cSSatish Balay 2575a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2576a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 25770298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2578a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2579a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2580a30f8f8cSSatish Balay 2581a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2582a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2583a30f8f8cSSatish Balay 2584a30f8f8cSSatish Balay .vb 2585a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2586a4b1a0f6SJed Brown -------------------------- 2587c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2588c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2589c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2590a4b1a0f6SJed Brown -------------------------- 2591a30f8f8cSSatish Balay .ve 2592a30f8f8cSSatish Balay 2593a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2594a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 25956d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 25966d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2597a30f8f8cSSatish Balay 25986d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 25996d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2600a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2601a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2602a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2603a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2604a30f8f8cSSatish Balay matrices. 2605a30f8f8cSSatish Balay 2606a30f8f8cSSatish Balay Level: intermediate 2607a30f8f8cSSatish Balay 260869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2609a30f8f8cSSatish Balay @*/ 2610a30f8f8cSSatish Balay 261169b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2612a30f8f8cSSatish Balay { 26136849ba73SBarry Smith PetscErrorCode ierr; 26141302d50aSBarry Smith PetscMPIInt size; 2615a30f8f8cSSatish Balay 2616a30f8f8cSSatish Balay PetscFunctionBegin; 2617f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2618f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2619273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2620273d9f13SBarry Smith if (size > 1) { 2621b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2622b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2623273d9f13SBarry Smith } else { 2624273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2625273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2626273d9f13SBarry Smith } 2627a30f8f8cSSatish Balay PetscFunctionReturn(0); 2628a30f8f8cSSatish Balay } 2629a30f8f8cSSatish Balay 2630a30f8f8cSSatish Balay 26316849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2632a30f8f8cSSatish Balay { 2633a30f8f8cSSatish Balay Mat mat; 2634a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2635dfbe8321SBarry Smith PetscErrorCode ierr; 2636d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2637387bc808SHong Zhang PetscScalar *array; 2638a30f8f8cSSatish Balay 2639a30f8f8cSSatish Balay PetscFunctionBegin; 2640a30f8f8cSSatish Balay *newmat = 0; 264126fbe8dcSKarl Rupp 2642ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2643d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 26447adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 26451e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 26461e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2647e1b6402fSHong Zhang 2648d5f3da31SBarry Smith mat->factortype = matin->factortype; 2649273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 265082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 26517fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 26527fff6886SHong Zhang 2653b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2654a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2655a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2656a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2657a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2658a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2659a30f8f8cSSatish Balay 2660a30f8f8cSSatish Balay a->size = oldmat->size; 2661a30f8f8cSSatish Balay a->rank = oldmat->rank; 2662a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2663a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2664a30f8f8cSSatish Balay a->rowindices = 0; 2665a30f8f8cSSatish Balay a->rowvalues = 0; 2666a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2667a30f8f8cSSatish Balay a->barray = 0; 2668899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2669899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2670899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2671899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2672a30f8f8cSSatish Balay 2673a30f8f8cSSatish Balay /* hash table stuff */ 2674a30f8f8cSSatish Balay a->ht = 0; 2675a30f8f8cSSatish Balay a->hd = 0; 2676a30f8f8cSSatish Balay a->ht_size = 0; 2677a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2678a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2679a30f8f8cSSatish Balay a->ht_total_ct = 0; 2680a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2681a30f8f8cSSatish Balay 2682580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr); 2683a30f8f8cSSatish Balay if (oldmat->colmap) { 2684a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2685a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2686a30f8f8cSSatish Balay #else 2687854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 26883bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2689580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 2690a30f8f8cSSatish Balay #endif 2691a30f8f8cSSatish Balay } else a->colmap = 0; 2692387bc808SHong Zhang 2693a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2694785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 26953bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2696580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 2697a30f8f8cSSatish Balay } else a->garray = 0; 2698a30f8f8cSSatish Balay 2699ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2700a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 27013bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2702a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 27033bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 270482327fa8SHong Zhang 270582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 27063bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 270782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 27083bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2709387bc808SHong Zhang 2710387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 27111ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2712778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2713778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 27141ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 27151ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2716778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 27171ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 27183bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 27193bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 27203bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 27213bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 27223bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2723387bc808SHong Zhang 2724387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2725387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2726387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 27273bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 272882327fa8SHong Zhang 2729a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 27303bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2731a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 27323bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2733140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2734a30f8f8cSSatish Balay *newmat = mat; 2735a30f8f8cSSatish Balay PetscFunctionReturn(0); 2736a30f8f8cSSatish Balay } 2737a30f8f8cSSatish Balay 2738112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 273995936485SShri Abhyankar { 274095936485SShri Abhyankar PetscErrorCode ierr; 274195936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 274295936485SShri Abhyankar PetscScalar *vals,*buf; 2743ce94432eSBarry Smith MPI_Comm comm; 274495936485SShri Abhyankar MPI_Status status; 2745adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2746adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 274795936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 27483059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 274995936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2750461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 275195936485SShri Abhyankar int fd; 27527f489da9SVaclav Hapla PetscBool isbinary; 275395936485SShri Abhyankar 275495936485SShri Abhyankar PetscFunctionBegin; 27557f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 27567f489da9SVaclav Hapla if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name); 27577f489da9SVaclav Hapla 2758c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2759c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2760ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 27610298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 27620298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 276395936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 27643059b6faSBarry Smith if (bs < 0) bs = 1; 276595936485SShri Abhyankar 276695936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 276795936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 276895936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 27695872f025SBarry Smith if (!rank) { 27709860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,(char*)header,4,NULL,PETSC_INT);CHKERRQ(ierr); 277195936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 277202f61395SBarry Smith if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 277395936485SShri Abhyankar } 277495936485SShri Abhyankar 277595936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 277626fbe8dcSKarl Rupp M = header[1]; 277726fbe8dcSKarl Rupp N = header[2]; 277895936485SShri Abhyankar 277995936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2780461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2781461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 278295936485SShri Abhyankar 278395936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 278495936485SShri Abhyankar 278595936485SShri Abhyankar /* 278695936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 278795936485SShri Abhyankar divisible by the blocksize 278895936485SShri Abhyankar */ 278995936485SShri Abhyankar Mbs = M/bs; 279095936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 279195936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 279295936485SShri Abhyankar else Mbs++; 279395936485SShri Abhyankar if (extra_rows &&!rank) { 279495936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 279595936485SShri Abhyankar } 279695936485SShri Abhyankar 279795936485SShri Abhyankar /* determine ownership of all rows */ 279895936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 279995936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 280095936485SShri Abhyankar m = mbs*bs; 280195936485SShri Abhyankar } else { /* User Set */ 280295936485SShri Abhyankar m = newmat->rmap->n; 280395936485SShri Abhyankar mbs = m/bs; 280495936485SShri Abhyankar } 2805dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 28064dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 280795936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 280895936485SShri Abhyankar rowners[0] = 0; 280995936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 281095936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 281195936485SShri Abhyankar rstart = rowners[rank]; 281295936485SShri Abhyankar rend = rowners[rank+1]; 281395936485SShri Abhyankar 281495936485SShri Abhyankar /* distribute row lengths to all processors */ 2815785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 281695936485SShri Abhyankar if (!rank) { 2817854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 28189860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,rowlengths,M,NULL,PETSC_INT);CHKERRQ(ierr); 281995936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2820785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 282195936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 282295936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 282395936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 282495936485SShri Abhyankar } else { 282595936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 282695936485SShri Abhyankar } 282795936485SShri Abhyankar 282895936485SShri Abhyankar if (!rank) { /* procs[0] */ 282995936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2830580bdb30SBarry Smith ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr); 283195936485SShri Abhyankar for (i=0; i<size; i++) { 283295936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 283395936485SShri Abhyankar procsnz[i] += rowlengths[j]; 283495936485SShri Abhyankar } 283595936485SShri Abhyankar } 283695936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 283795936485SShri Abhyankar 283895936485SShri Abhyankar /* determine max buffer needed and allocate it */ 283995936485SShri Abhyankar maxnz = 0; 284095936485SShri Abhyankar for (i=0; i<size; i++) { 284195936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 284295936485SShri Abhyankar } 2843785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 284495936485SShri Abhyankar 284595936485SShri Abhyankar /* read in my part of the matrix column indices */ 284695936485SShri Abhyankar nz = procsnz[0]; 2847785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 284895936485SShri Abhyankar mycols = ibuf; 284995936485SShri Abhyankar if (size == 1) nz -= extra_rows; 28509860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,mycols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 285126fbe8dcSKarl Rupp if (size == 1) { 285226fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 285326fbe8dcSKarl Rupp } 285495936485SShri Abhyankar 285595936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 285695936485SShri Abhyankar for (i=1; i<size-1; i++) { 285795936485SShri Abhyankar nz = procsnz[i]; 28589860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 285995936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 286095936485SShri Abhyankar } 286195936485SShri Abhyankar /* read in the stuff for the last proc */ 286295936485SShri Abhyankar if (size != 1) { 286395936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 28649860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 286595936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 286695936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 286795936485SShri Abhyankar } 286895936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 286995936485SShri Abhyankar } else { /* procs[i], i>0 */ 287095936485SShri Abhyankar /* determine buffer space needed for message */ 287195936485SShri Abhyankar nz = 0; 287226fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2873785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 287495936485SShri Abhyankar mycols = ibuf; 287595936485SShri Abhyankar /* receive message of column indices*/ 287695936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 287795936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 287895936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 287995936485SShri Abhyankar } 288095936485SShri Abhyankar 288195936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2882dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2883580bdb30SBarry Smith ierr = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 288495936485SShri Abhyankar rowcount = 0; 288595936485SShri Abhyankar nzcount = 0; 288695936485SShri Abhyankar for (i=0; i<mbs; i++) { 288795936485SShri Abhyankar dcount = 0; 288895936485SShri Abhyankar odcount = 0; 288995936485SShri Abhyankar for (j=0; j<bs; j++) { 289095936485SShri Abhyankar kmax = locrowlens[rowcount]; 289195936485SShri Abhyankar for (k=0; k<kmax; k++) { 289295936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 289395936485SShri Abhyankar if (!mask[tmp]) { 289495936485SShri Abhyankar mask[tmp] = 1; 289595936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 289695936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 289795936485SShri Abhyankar } 289895936485SShri Abhyankar } 289995936485SShri Abhyankar rowcount++; 290095936485SShri Abhyankar } 290195936485SShri Abhyankar 290295936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 290395936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 290495936485SShri Abhyankar 290595936485SShri Abhyankar /* zero out the mask elements we set */ 290695936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 290795936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 290895936485SShri Abhyankar } 290995936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 291095936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 29116816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 291295936485SShri Abhyankar 291395936485SShri Abhyankar if (!rank) { 2914785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 291595936485SShri Abhyankar /* read in my part of the matrix numerical values */ 291695936485SShri Abhyankar nz = procsnz[0]; 291795936485SShri Abhyankar vals = buf; 291895936485SShri Abhyankar mycols = ibuf; 291995936485SShri Abhyankar if (size == 1) nz -= extra_rows; 29209860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 292126fbe8dcSKarl Rupp if (size == 1) { 292226fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 292326fbe8dcSKarl Rupp } 292495936485SShri Abhyankar 292595936485SShri Abhyankar /* insert into matrix */ 292695936485SShri Abhyankar jj = rstart*bs; 292795936485SShri Abhyankar for (i=0; i<m; i++) { 292895936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 292995936485SShri Abhyankar mycols += locrowlens[i]; 293095936485SShri Abhyankar vals += locrowlens[i]; 293195936485SShri Abhyankar jj++; 293295936485SShri Abhyankar } 293395936485SShri Abhyankar 293495936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 293595936485SShri Abhyankar for (i=1; i<size-1; i++) { 293695936485SShri Abhyankar nz = procsnz[i]; 293795936485SShri Abhyankar vals = buf; 29389860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 293995936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 294095936485SShri Abhyankar } 294195936485SShri Abhyankar /* the last proc */ 294295936485SShri Abhyankar if (size != 1) { 294395936485SShri Abhyankar nz = procsnz[i] - extra_rows; 294495936485SShri Abhyankar vals = buf; 29459860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 294695936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 294795936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 294895936485SShri Abhyankar } 294995936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 295095936485SShri Abhyankar 295195936485SShri Abhyankar } else { 295295936485SShri Abhyankar /* receive numeric values */ 2953785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 295495936485SShri Abhyankar 295595936485SShri Abhyankar /* receive message of values*/ 295695936485SShri Abhyankar vals = buf; 295795936485SShri Abhyankar mycols = ibuf; 295895936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 295995936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 296095936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 296195936485SShri Abhyankar 296295936485SShri Abhyankar /* insert into matrix */ 296395936485SShri Abhyankar jj = rstart*bs; 296495936485SShri Abhyankar for (i=0; i<m; i++) { 296595936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 296695936485SShri Abhyankar mycols += locrowlens[i]; 296795936485SShri Abhyankar vals += locrowlens[i]; 296895936485SShri Abhyankar jj++; 296995936485SShri Abhyankar } 297095936485SShri Abhyankar } 297195936485SShri Abhyankar 297295936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 297395936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 297495936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 297595936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 297695936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 297795936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 297895936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 297995936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 298095936485SShri Abhyankar PetscFunctionReturn(0); 298195936485SShri Abhyankar } 298295936485SShri Abhyankar 2983dcf5cc72SBarry Smith /*XXXXX@ 2984a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2985a30f8f8cSSatish Balay 2986a30f8f8cSSatish Balay Input Parameters: 2987a30f8f8cSSatish Balay . mat - the matrix 2988a30f8f8cSSatish Balay . fact - factor 2989a30f8f8cSSatish Balay 2990c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2991a30f8f8cSSatish Balay 2992a30f8f8cSSatish Balay Level: advanced 2993a30f8f8cSSatish Balay 2994a30f8f8cSSatish Balay Notes: 2995a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2996a30f8f8cSSatish Balay 2997a30f8f8cSSatish Balay .seealso: MatSetOption() 2998dcf5cc72SBarry Smith @XXXXX*/ 2999dcf5cc72SBarry Smith 300024d5174aSHong Zhang 3001985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 300224d5174aSHong Zhang { 300324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 3004f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 3005ca54ac64SHong Zhang PetscReal atmp; 300687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 3007dfbe8321SBarry Smith PetscErrorCode ierr; 30081302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 30091302d50aSBarry Smith PetscMPIInt rank,size; 30101302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 301187828ca2SBarry Smith PetscScalar *va; 30128a1c53f2SBarry Smith MatScalar *ba; 3013f4c0e9e4SHong Zhang MPI_Status stat; 301424d5174aSHong Zhang 301524d5174aSHong Zhang PetscFunctionBegin; 3016e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 30170298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 30181ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 3019f4c0e9e4SHong Zhang 3020ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 3021ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 3022f4c0e9e4SHong Zhang 3023d0f46423SBarry Smith bs = A->rmap->bs; 3024f4c0e9e4SHong Zhang mbs = a->mbs; 3025f4c0e9e4SHong Zhang Mbs = a->Mbs; 3026f4c0e9e4SHong Zhang ba = b->a; 3027f4c0e9e4SHong Zhang bi = b->i; 3028f4c0e9e4SHong Zhang bj = b->j; 3029f4c0e9e4SHong Zhang 3030f4c0e9e4SHong Zhang /* find ownerships */ 3031d0f46423SBarry Smith rowners_bs = A->rmap->range; 3032f4c0e9e4SHong Zhang 3033f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 3034580bdb30SBarry Smith ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr); 3035f4c0e9e4SHong Zhang 3036f4c0e9e4SHong Zhang /* row_max for B */ 3037b8475685SHong Zhang if (rank != size-1) { 3038f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 3039f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 3040f4c0e9e4SHong Zhang brow = bs*i; 3041f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 3042f4c0e9e4SHong Zhang bcol = bs*(*bj); 3043f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 3044ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 304504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 3046f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 3047f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 3048ca54ac64SHong Zhang row = brow + krow; /* local row index */ 3049ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 3050f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 3051f4c0e9e4SHong Zhang } 3052f4c0e9e4SHong Zhang } 3053f4c0e9e4SHong Zhang bj++; 3054f4c0e9e4SHong Zhang } 3055f4c0e9e4SHong Zhang } 3056f4c0e9e4SHong Zhang 3057f4c0e9e4SHong Zhang /* send values to its owners */ 3058f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 3059f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 3060ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 3061ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 3062ca54ac64SHong Zhang } 3063f4c0e9e4SHong Zhang } 3064f4c0e9e4SHong Zhang 3065f4c0e9e4SHong Zhang /* receive values */ 3066ca54ac64SHong Zhang if (rank) { 3067f4c0e9e4SHong Zhang rvalues = work; 3068ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 3069f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 3070ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 3071f4c0e9e4SHong Zhang /* process values */ 3072f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 3073ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 3074f4c0e9e4SHong Zhang } 3075f4c0e9e4SHong Zhang } 3076ca54ac64SHong Zhang } 3077f4c0e9e4SHong Zhang 30781ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 3079ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 308024d5174aSHong Zhang PetscFunctionReturn(0); 308124d5174aSHong Zhang } 30822798e883SHong Zhang 308341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 30842798e883SHong Zhang { 30852798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3086dfbe8321SBarry Smith PetscErrorCode ierr; 3087d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 30883649974fSBarry Smith PetscScalar *x,*ptr,*from; 3089ffe4fb16SHong Zhang Vec bb1; 30903649974fSBarry Smith const PetscScalar *b; 3091ffe4fb16SHong Zhang 3092ffe4fb16SHong Zhang PetscFunctionBegin; 3093e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3094e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 3095ffe4fb16SHong Zhang 3096a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 309741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3098a2b30743SBarry Smith PetscFunctionReturn(0); 3099a2b30743SBarry Smith } 3100a2b30743SBarry Smith 3101ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 3102ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 310341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 3104ffe4fb16SHong Zhang its--; 3105ffe4fb16SHong Zhang } 3106ffe4fb16SHong Zhang 3107ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 3108ffe4fb16SHong Zhang while (its--) { 3109ffe4fb16SHong Zhang 3110ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 3111ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3112ffe4fb16SHong Zhang 3113ffe4fb16SHong Zhang /* copy xx into slvec0a */ 31141ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 31151ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3116580bdb30SBarry Smith ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr); 31171ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 3118ffe4fb16SHong Zhang 3119efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 3120ffe4fb16SHong Zhang 3121ffe4fb16SHong Zhang /* copy bb into slvec1a */ 31221ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 31233649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 3124580bdb30SBarry Smith ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr); 31251ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 3126ffe4fb16SHong Zhang 3127ffe4fb16SHong Zhang /* set slvec1b = 0 */ 3128fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3129ffe4fb16SHong Zhang 3130ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 31311ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3132a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 3133ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3134ffe4fb16SHong Zhang 3135ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 3136ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 3137ffe4fb16SHong Zhang 3138ffe4fb16SHong Zhang /* local diagonal sweep */ 313941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 3140ffe4fb16SHong Zhang } 31416bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 3142fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 314341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3144fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 314541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3146fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 3147fa22f6d0SBarry Smith Vec xx1; 3148ace3abfcSBarry Smith PetscBool hasop; 314920f1ed55SBarry Smith const PetscScalar *diag; 3150887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 315120f1ed55SBarry Smith PetscInt i,n; 3152fa22f6d0SBarry Smith 3153fa22f6d0SBarry Smith if (!mat->xx1) { 3154fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 3155fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 3156fa22f6d0SBarry Smith } 3157fa22f6d0SBarry Smith xx1 = mat->xx1; 3158fa22f6d0SBarry Smith bb1 = mat->bb1; 3159fa22f6d0SBarry Smith 316041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 3161fa22f6d0SBarry Smith 3162fa22f6d0SBarry Smith if (!mat->diag) { 3163effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 31642a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 3165fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 3166fa22f6d0SBarry Smith } 3167fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 3168fa22f6d0SBarry Smith 3169fa22f6d0SBarry Smith if (hasop) { 3170fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 3171887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 317220f1ed55SBarry Smith } else { 317320f1ed55SBarry Smith /* 317420f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 317520f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 3176887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 317720f1ed55SBarry Smith */ 317820f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 31793649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 31803649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 318120f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 318220f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 3183887ee2caSBarry Smith if (omega == 1.0) { 318426fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 318520f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 3186887ee2caSBarry Smith } else { 318726fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 3188887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 3189887ee2caSBarry Smith } 319020f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 31913649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 31923649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 319320f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 319420f1ed55SBarry Smith } 3195fa22f6d0SBarry Smith 3196fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 3197fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3198fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3199fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 3200fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3201580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 3202fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 3203fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3204fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3205fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3206effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 3207fa22f6d0SBarry Smith 3208fa22f6d0SBarry Smith /* local sweep */ 320941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 3210fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 3211f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 3212ffe4fb16SHong Zhang PetscFunctionReturn(0); 3213ffe4fb16SHong Zhang } 3214ffe4fb16SHong Zhang 321541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 3216ffe4fb16SHong Zhang { 3217ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3218dfbe8321SBarry Smith PetscErrorCode ierr; 32192798e883SHong Zhang Vec lvec1,bb1; 32202798e883SHong Zhang 32212798e883SHong Zhang PetscFunctionBegin; 3222e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3223e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 32242798e883SHong Zhang 3225c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 32262798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 322741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 32282798e883SHong Zhang its--; 32292798e883SHong Zhang } 32302798e883SHong Zhang 32312798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 32322798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 32332798e883SHong Zhang while (its--) { 3234ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32352798e883SHong Zhang 32362798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 32372798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3238efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 32392798e883SHong Zhang 3240ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32412798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3242ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 32432798e883SHong Zhang 32442798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3245efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 32462798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 32472798e883SHong Zhang 3248ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 32492798e883SHong Zhang 3250c14dc6b6SHong Zhang /* diagonal sweep */ 325141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 32522798e883SHong Zhang } 32536bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 32546bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 32556bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 32562798e883SHong Zhang PetscFunctionReturn(0); 32572798e883SHong Zhang } 32582798e883SHong Zhang 3259dfb205c3SBarry Smith /*@ 3260dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3261dfb205c3SBarry Smith CSR format the local rows. 3262dfb205c3SBarry Smith 3263d083f849SBarry Smith Collective 3264dfb205c3SBarry Smith 3265dfb205c3SBarry Smith Input Parameters: 3266dfb205c3SBarry Smith + comm - MPI communicator 3267dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3268dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3269dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3270dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3271dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3272dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3273dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3274483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 3275dfb205c3SBarry Smith . j - column indices 3276dfb205c3SBarry Smith - a - matrix values 3277dfb205c3SBarry Smith 3278dfb205c3SBarry Smith Output Parameter: 3279dfb205c3SBarry Smith . mat - the matrix 3280dfb205c3SBarry Smith 3281dfb205c3SBarry Smith Level: intermediate 3282dfb205c3SBarry Smith 3283dfb205c3SBarry Smith Notes: 3284dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3285dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3286dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3287dfb205c3SBarry Smith 3288dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3289dfb205c3SBarry Smith 3290dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 329169b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3292dfb205c3SBarry Smith @*/ 32937087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3294dfb205c3SBarry Smith { 3295dfb205c3SBarry Smith PetscErrorCode ierr; 3296dfb205c3SBarry Smith 3297dfb205c3SBarry Smith 3298dfb205c3SBarry Smith PetscFunctionBegin; 3299f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3300dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3301dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3302dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3303dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3304dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3305dfb205c3SBarry Smith PetscFunctionReturn(0); 3306dfb205c3SBarry Smith } 3307dfb205c3SBarry Smith 3308dfb205c3SBarry Smith 3309dfb205c3SBarry Smith /*@C 3310664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 3311dfb205c3SBarry Smith 3312d083f849SBarry Smith Collective 3313dfb205c3SBarry Smith 3314dfb205c3SBarry Smith Input Parameters: 33151c4f3114SJed Brown + B - the matrix 3316dfb205c3SBarry Smith . bs - the block size 3317dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3318dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3319dfb205c3SBarry Smith - v - optional values in the matrix 3320dfb205c3SBarry Smith 3321664954b6SBarry Smith Level: advanced 3322664954b6SBarry Smith 3323664954b6SBarry Smith Notes: 33240cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 33250cd7f59aSBarry Smith and usually the numerical values as well 33260cd7f59aSBarry Smith 332750c5228eSBarry Smith Any entries below the diagonal are ignored 3328dfb205c3SBarry Smith 332969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3330dfb205c3SBarry Smith @*/ 33317087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3332dfb205c3SBarry Smith { 33334ac538c5SBarry Smith PetscErrorCode ierr; 3334dfb205c3SBarry Smith 3335dfb205c3SBarry Smith PetscFunctionBegin; 33364ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3337dfb205c3SBarry Smith PetscFunctionReturn(0); 3338dfb205c3SBarry Smith } 3339dfb205c3SBarry Smith 334010c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 33414dcd73b1SHong Zhang { 33424dcd73b1SHong Zhang PetscErrorCode ierr; 334310c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 334410c56fdeSHong Zhang PetscInt *indx; 334510c56fdeSHong Zhang PetscScalar *values; 3346dfb205c3SBarry Smith 33474dcd73b1SHong Zhang PetscFunctionBegin; 33484dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 334910c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 335010c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 3351de25e9cbSPierre Jolivet PetscInt *dnz,*onz,mbs,Nbs,nbs; 335210c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 3353de25e9cbSPierre Jolivet PetscMPIInt rank,size; 33544dcd73b1SHong Zhang 335510c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 335610c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 335710c56fdeSHong Zhang if (n == PETSC_DECIDE) { 3358da91a574SPierre Jolivet ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N); 335910c56fdeSHong Zhang } 3360da91a574SPierre Jolivet nbs = n/cbs; 33614dcd73b1SHong Zhang 33624dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 3363de25e9cbSPierre Jolivet ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 3364de25e9cbSPierre Jolivet 3365de25e9cbSPierre Jolivet ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 3366de25e9cbSPierre Jolivet ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr); 3367de25e9cbSPierre Jolivet if (rank == size-1) { 3368de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 3369de25e9cbSPierre Jolivet if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 3370de25e9cbSPierre Jolivet } 3371de25e9cbSPierre Jolivet 3372de25e9cbSPierre Jolivet rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 3373e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 337410c56fdeSHong Zhang for (i=0; i<mbs; i++) { 33754dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 33764dcd73b1SHong Zhang nnz = nnz/bs; 33774dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 33784dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 33794dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 33804dcd73b1SHong Zhang } 3381e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 33824dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 33834dcd73b1SHong Zhang 33844dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 3385de25e9cbSPierre Jolivet ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 33864dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 3387ce94fc41SPierre Jolivet ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr); 3388ce94fc41SPierre Jolivet ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 33894dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 33904dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 33914dcd73b1SHong Zhang } 33924dcd73b1SHong Zhang 339310c56fdeSHong Zhang /* numeric phase */ 33944dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 339510c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 33964dcd73b1SHong Zhang 3397e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 33984dcd73b1SHong Zhang for (i=0; i<m; i++) { 33994dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 34004dcd73b1SHong Zhang Ii = i + rstart; 340110c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 34024dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 34034dcd73b1SHong Zhang } 3404e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 340510c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 340610c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 34074dcd73b1SHong Zhang PetscFunctionReturn(0); 34084dcd73b1SHong Zhang } 3409