xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 28d58a3775d150be3540512488262419d353712e)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10b147fbf3SStefano Zampini 
11b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
12b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
13b147fbf3SStefano Zampini {
14b147fbf3SStefano Zampini   Mat            preallocator;
15b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
16b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
17b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
18b147fbf3SStefano Zampini   PetscErrorCode ierr;
19b147fbf3SStefano Zampini 
20b147fbf3SStefano Zampini   PetscFunctionBegin;
21b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
23b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
24b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
25b147fbf3SStefano Zampini     ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr);
26b147fbf3SStefano Zampini     if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
27b147fbf3SStefano Zampini   }
28b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
29b147fbf3SStefano Zampini   ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr);
30b147fbf3SStefano Zampini   ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr);
31b147fbf3SStefano Zampini   ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr);
32b147fbf3SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr);
33b147fbf3SStefano Zampini   ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr);
34b147fbf3SStefano Zampini   ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr);
35b147fbf3SStefano Zampini   ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr);
36b147fbf3SStefano Zampini   ierr = MatSetUp(preallocator);CHKERRQ(ierr);
37b147fbf3SStefano Zampini   ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr);
38b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
39b147fbf3SStefano Zampini     PetscInt          ncols;
40b147fbf3SStefano Zampini     const PetscInt    *row;
41b147fbf3SStefano Zampini     const PetscScalar *vals;
42b147fbf3SStefano Zampini 
43b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
44b147fbf3SStefano Zampini       ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
45b147fbf3SStefano Zampini       ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
46b147fbf3SStefano Zampini       if (symm && symm[i]) {
47b147fbf3SStefano Zampini         ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
48b147fbf3SStefano Zampini       }
49b147fbf3SStefano Zampini       ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
50b147fbf3SStefano Zampini     }
51b147fbf3SStefano Zampini   }
52b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
53b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
54b147fbf3SStefano Zampini   ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr);
55b147fbf3SStefano Zampini   ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
56b147fbf3SStefano Zampini   PetscFunctionReturn(0);
57b147fbf3SStefano Zampini }
58b147fbf3SStefano Zampini 
59*28d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
60b147fbf3SStefano Zampini {
61b147fbf3SStefano Zampini   Mat            B;
62b147fbf3SStefano Zampini   PetscErrorCode ierr;
63b147fbf3SStefano Zampini   PetscInt       r;
64b147fbf3SStefano Zampini 
65b147fbf3SStefano Zampini   PetscFunctionBegin;
66b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
67*28d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE,isdense;
68b147fbf3SStefano Zampini     PetscInt  bs;
69b147fbf3SStefano Zampini 
70b147fbf3SStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
71b147fbf3SStefano Zampini     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
72b147fbf3SStefano Zampini     ierr = MatSetType(B,newtype);CHKERRQ(ierr);
73b147fbf3SStefano Zampini     ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr);
74b147fbf3SStefano Zampini     ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr);
75b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
76b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
77*28d58a37SPierre Jolivet     ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
78*28d58a37SPierre Jolivet     if (!isdense) {
79b147fbf3SStefano Zampini       ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
80b147fbf3SStefano Zampini       ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr);
81b147fbf3SStefano Zampini       ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
82*28d58a37SPierre Jolivet     } else {
83*28d58a37SPierre Jolivet       ierr = MatSetUp(B);CHKERRQ(ierr);
84*28d58a37SPierre Jolivet     }
85*28d58a37SPierre Jolivet   } else {
86*28d58a37SPierre Jolivet     B    = *newmat;
87*28d58a37SPierre Jolivet     ierr = MatZeroEntries(B);CHKERRQ(ierr);
88*28d58a37SPierre Jolivet   }
89b147fbf3SStefano Zampini 
90b147fbf3SStefano Zampini   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
91b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
92b147fbf3SStefano Zampini     PetscInt          ncols;
93b147fbf3SStefano Zampini     const PetscInt    *row;
94b147fbf3SStefano Zampini     const PetscScalar *vals;
95b147fbf3SStefano Zampini 
96b147fbf3SStefano Zampini     ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
97b147fbf3SStefano Zampini     ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
98b147fbf3SStefano Zampini     ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
99b147fbf3SStefano Zampini     ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
100b147fbf3SStefano Zampini   }
101b147fbf3SStefano Zampini   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
102b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
103b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
104b147fbf3SStefano Zampini 
105b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
106b147fbf3SStefano Zampini     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
107b147fbf3SStefano Zampini   } else {
108b147fbf3SStefano Zampini     *newmat = B;
109b147fbf3SStefano Zampini   }
110b147fbf3SStefano Zampini   PetscFunctionReturn(0);
111b147fbf3SStefano Zampini }
112b147fbf3SStefano Zampini 
1137087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
114a30f8f8cSSatish Balay {
115f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
116dfbe8321SBarry Smith   PetscErrorCode ierr;
117a30f8f8cSSatish Balay 
118a30f8f8cSSatish Balay   PetscFunctionBegin;
119a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
120a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
121a30f8f8cSSatish Balay   PetscFunctionReturn(0);
122a30f8f8cSSatish Balay }
123a30f8f8cSSatish Balay 
1247087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
125a30f8f8cSSatish Balay {
126f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
127dfbe8321SBarry Smith   PetscErrorCode ierr;
128a30f8f8cSSatish Balay 
129a30f8f8cSSatish Balay   PetscFunctionBegin;
130a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
131a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
132a30f8f8cSSatish Balay   PetscFunctionReturn(0);
133a30f8f8cSSatish Balay }
134a30f8f8cSSatish Balay 
135d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
136a30f8f8cSSatish Balay   { \
137a30f8f8cSSatish Balay     brow = row/bs;  \
138a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
139a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
140a30f8f8cSSatish Balay     bcol = col/bs; \
141a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
142a30f8f8cSSatish Balay     low  = 0; high = nrow; \
143a30f8f8cSSatish Balay     while (high-low > 3) { \
144a30f8f8cSSatish Balay       t = (low+high)/2; \
145a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
146a30f8f8cSSatish Balay       else              low  = t; \
147a30f8f8cSSatish Balay     } \
148a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
149a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
150a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
151a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
152a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
153a30f8f8cSSatish Balay         else                    *bap  = value;  \
154a30f8f8cSSatish Balay         goto a_noinsert; \
155a30f8f8cSSatish Balay       } \
156a30f8f8cSSatish Balay     } \
157a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
158d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
159fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
160a30f8f8cSSatish Balay     N = nrow++ - 1;  \
161a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
162580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
163580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
164580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
165a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
166a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
167e56f5c9eSBarry Smith     A->nonzerostate++;\
168a30f8f8cSSatish Balay a_noinsert:; \
169a30f8f8cSSatish Balay     ailen[brow] = nrow; \
170a30f8f8cSSatish Balay   }
171e5e170daSBarry Smith 
172d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
173a30f8f8cSSatish Balay   { \
174a30f8f8cSSatish Balay     brow = row/bs;  \
175a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
176a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
177a30f8f8cSSatish Balay     bcol = col/bs; \
178a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
179a30f8f8cSSatish Balay     low  = 0; high = nrow; \
180a30f8f8cSSatish Balay     while (high-low > 3) { \
181a30f8f8cSSatish Balay       t = (low+high)/2; \
182a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
183a30f8f8cSSatish Balay       else              low  = t; \
184a30f8f8cSSatish Balay     } \
185a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
186a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
187a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
188a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
189a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
190a30f8f8cSSatish Balay         else                    *bap  = value;  \
191a30f8f8cSSatish Balay         goto b_noinsert; \
192a30f8f8cSSatish Balay       } \
193a30f8f8cSSatish Balay     } \
194a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
195d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
196fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
197a30f8f8cSSatish Balay     N = nrow++ - 1;  \
198a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
199580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
200580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
201580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \
202a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
203a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
204e56f5c9eSBarry Smith     B->nonzerostate++;\
205a30f8f8cSSatish Balay b_noinsert:; \
206a30f8f8cSSatish Balay     bilen[brow] = nrow; \
207a30f8f8cSSatish Balay   }
208a30f8f8cSSatish Balay 
209a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
210476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
211a30f8f8cSSatish Balay */
212dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
213a30f8f8cSSatish Balay {
214a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
215a30f8f8cSSatish Balay   MatScalar      value;
216ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
217dfbe8321SBarry Smith   PetscErrorCode ierr;
2181302d50aSBarry Smith   PetscInt       i,j,row,col;
219d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
220d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
221d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
222a30f8f8cSSatish Balay 
223a30f8f8cSSatish Balay   /* Some Variables required in the macro */
224a30f8f8cSSatish Balay   Mat          A     = baij->A;
225a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2261302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
227a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
228a30f8f8cSSatish Balay 
229a30f8f8cSSatish Balay   Mat         B     = baij->B;
230a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2311302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
232a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
233a30f8f8cSSatish Balay 
2341302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2351302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
236a30f8f8cSSatish Balay   MatScalar *ap,*bap;
237a30f8f8cSSatish Balay 
238a30f8f8cSSatish Balay   /* for stash */
2390298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2400298fd71SBarry Smith   MatScalar *v_loc = NULL;
241a30f8f8cSSatish Balay 
242a30f8f8cSSatish Balay   PetscFunctionBegin;
243a30f8f8cSSatish Balay   if (!baij->donotstash) {
24459ffdab8SBarry Smith     if (n > baij->n_loc) {
24559ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
24659ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
247785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
248785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
24926fbe8dcSKarl Rupp 
25059ffdab8SBarry Smith       baij->n_loc = n;
25159ffdab8SBarry Smith     }
25259ffdab8SBarry Smith     in_loc = baij->in_loc;
25359ffdab8SBarry Smith     v_loc  = baij->v_loc;
254a30f8f8cSSatish Balay   }
255a30f8f8cSSatish Balay 
256a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
257a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2582515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
259e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
260a30f8f8cSSatish Balay #endif
261a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
262a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
263a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
26401b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
26501b2bd88SHong Zhang           if (a->ignore_ltriangular) {
26601b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
26726fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
26801b2bd88SHong Zhang         }
269a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
270a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
271a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
272a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
273db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
274db4deed7SKarl Rupp           else             value = v[i+j*m];
275d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
276a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
277a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2782515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
279cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
280a30f8f8cSSatish Balay #endif
281a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
282a30f8f8cSSatish Balay           if (mat->was_assembled) {
283a30f8f8cSSatish Balay             if (!baij->colmap) {
284ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
285a30f8f8cSSatish Balay             }
286a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
287a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28871730473SSatish Balay             col  = col - 1;
289a30f8f8cSSatish Balay #else
29071730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
291a30f8f8cSSatish Balay #endif
292a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
293ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
294a30f8f8cSSatish Balay               col  =  in[j];
295a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
296a30f8f8cSSatish Balay               B    = baij->B;
297a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
298a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
299a30f8f8cSSatish Balay               ba   = b->a;
30071730473SSatish Balay             } else col += in[j]%bs;
301a30f8f8cSSatish Balay           } else col = in[j];
302db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
303db4deed7SKarl Rupp           else             value = v[i+j*m];
304d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
305a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
306a30f8f8cSSatish Balay         }
307a30f8f8cSSatish Balay       }
308a30f8f8cSSatish Balay     } else {  /* off processor entry */
3094cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
310a30f8f8cSSatish Balay       if (!baij->donotstash) {
3115080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
312a30f8f8cSSatish Balay         n_loc          = 0;
313a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
314f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
315a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
316a30f8f8cSSatish Balay           if (roworiented) {
317a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
318a30f8f8cSSatish Balay           } else {
319a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
320a30f8f8cSSatish Balay           }
321a30f8f8cSSatish Balay           n_loc++;
322a30f8f8cSSatish Balay         }
323b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
324a30f8f8cSSatish Balay       }
325a30f8f8cSSatish Balay     }
326a30f8f8cSSatish Balay   }
327a30f8f8cSSatish Balay   PetscFunctionReturn(0);
328a30f8f8cSSatish Balay }
329a30f8f8cSSatish Balay 
33036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
33136bd2089SBarry Smith {
33236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
33336bd2089SBarry Smith   PetscErrorCode    ierr;
33436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
33536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
33636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
33736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
33836bd2089SBarry Smith   const PetscScalar *value     = v;
33936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
34036bd2089SBarry Smith 
34136bd2089SBarry Smith   PetscFunctionBegin;
34236bd2089SBarry Smith   if (col < row) {
34336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
34436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
34536bd2089SBarry Smith   }
34636bd2089SBarry Smith   rp   = aj + ai[row];
34736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
34836bd2089SBarry Smith   rmax = imax[row];
34936bd2089SBarry Smith   nrow = ailen[row];
35036bd2089SBarry Smith   value = v;
35136bd2089SBarry Smith   low   = 0;
35236bd2089SBarry Smith   high  = nrow;
35336bd2089SBarry Smith 
35436bd2089SBarry Smith   while (high-low > 7) {
35536bd2089SBarry Smith     t = (low+high)/2;
35636bd2089SBarry Smith     if (rp[t] > col) high = t;
35736bd2089SBarry Smith     else             low  = t;
35836bd2089SBarry Smith   }
35936bd2089SBarry Smith   for (i=low; i<high; i++) {
36036bd2089SBarry Smith     if (rp[i] > col) break;
36136bd2089SBarry Smith     if (rp[i] == col) {
36236bd2089SBarry Smith       bap = ap +  bs2*i;
36336bd2089SBarry Smith       if (roworiented) {
36436bd2089SBarry Smith         if (is == ADD_VALUES) {
36536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
36636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
36736bd2089SBarry Smith               bap[jj] += *value++;
36836bd2089SBarry Smith             }
36936bd2089SBarry Smith           }
37036bd2089SBarry Smith         } else {
37136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37336bd2089SBarry Smith               bap[jj] = *value++;
37436bd2089SBarry Smith             }
37536bd2089SBarry Smith           }
37636bd2089SBarry Smith         }
37736bd2089SBarry Smith       } else {
37836bd2089SBarry Smith         if (is == ADD_VALUES) {
37936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
38036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38136bd2089SBarry Smith               *bap++ += *value++;
38236bd2089SBarry Smith             }
38336bd2089SBarry Smith           }
38436bd2089SBarry Smith         } else {
38536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
38636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38736bd2089SBarry Smith               *bap++  = *value++;
38836bd2089SBarry Smith             }
38936bd2089SBarry Smith           }
39036bd2089SBarry Smith         }
39136bd2089SBarry Smith       }
39236bd2089SBarry Smith       goto noinsert2;
39336bd2089SBarry Smith     }
39436bd2089SBarry Smith   }
39536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
39636bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
39736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
39836bd2089SBarry Smith   N = nrow++ - 1; high++;
39936bd2089SBarry Smith   /* shift up all the later entries in this row */
400580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
401580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
40236bd2089SBarry Smith   rp[i] = col;
40336bd2089SBarry Smith   bap   = ap +  bs2*i;
40436bd2089SBarry Smith   if (roworiented) {
40536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
40636bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
40736bd2089SBarry Smith         bap[jj] = *value++;
40836bd2089SBarry Smith       }
40936bd2089SBarry Smith     }
41036bd2089SBarry Smith   } else {
41136bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41236bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
41336bd2089SBarry Smith         *bap++ = *value++;
41436bd2089SBarry Smith       }
41536bd2089SBarry Smith     }
41636bd2089SBarry Smith   }
41736bd2089SBarry Smith   noinsert2:;
41836bd2089SBarry Smith   ailen[row] = nrow;
41936bd2089SBarry Smith   PetscFunctionReturn(0);
42036bd2089SBarry Smith }
42136bd2089SBarry Smith 
42236bd2089SBarry Smith /*
42336bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
42436bd2089SBarry Smith */
42536bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
42636bd2089SBarry Smith {
42736bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
42836bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
42936bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
43036bd2089SBarry Smith   PetscErrorCode    ierr;
43136bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
43236bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
43336bd2089SBarry Smith   const PetscScalar *value     = v;
43436bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
43536bd2089SBarry Smith 
43636bd2089SBarry Smith   PetscFunctionBegin;
43736bd2089SBarry Smith   rp   = aj + ai[row];
43836bd2089SBarry Smith   ap   = aa + bs2*ai[row];
43936bd2089SBarry Smith   rmax = imax[row];
44036bd2089SBarry Smith   nrow = ailen[row];
44136bd2089SBarry Smith   low  = 0;
44236bd2089SBarry Smith   high = nrow;
44336bd2089SBarry Smith   value = v;
44436bd2089SBarry Smith   while (high-low > 7) {
44536bd2089SBarry Smith     t = (low+high)/2;
44636bd2089SBarry Smith     if (rp[t] > col) high = t;
44736bd2089SBarry Smith     else             low  = t;
44836bd2089SBarry Smith   }
44936bd2089SBarry Smith   for (i=low; i<high; i++) {
45036bd2089SBarry Smith     if (rp[i] > col) break;
45136bd2089SBarry Smith     if (rp[i] == col) {
45236bd2089SBarry Smith       bap = ap +  bs2*i;
45336bd2089SBarry Smith       if (roworiented) {
45436bd2089SBarry Smith         if (is == ADD_VALUES) {
45536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
45636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
45736bd2089SBarry Smith               bap[jj] += *value++;
45836bd2089SBarry Smith             }
45936bd2089SBarry Smith           }
46036bd2089SBarry Smith         } else {
46136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
46236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46336bd2089SBarry Smith               bap[jj] = *value++;
46436bd2089SBarry Smith             }
46536bd2089SBarry Smith           }
46636bd2089SBarry Smith         }
46736bd2089SBarry Smith       } else {
46836bd2089SBarry Smith         if (is == ADD_VALUES) {
46936bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
47036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
47136bd2089SBarry Smith               bap[jj] += value[jj];
47236bd2089SBarry Smith             }
47336bd2089SBarry Smith             bap += bs;
47436bd2089SBarry Smith           }
47536bd2089SBarry Smith         } else {
47636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
47736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
47836bd2089SBarry Smith               bap[jj]  = value[jj];
47936bd2089SBarry Smith             }
48036bd2089SBarry Smith             bap += bs;
48136bd2089SBarry Smith           }
48236bd2089SBarry Smith         }
48336bd2089SBarry Smith       }
48436bd2089SBarry Smith       goto noinsert2;
48536bd2089SBarry Smith     }
48636bd2089SBarry Smith   }
48736bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
48836bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
48936bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
49036bd2089SBarry Smith   N = nrow++ - 1; high++;
49136bd2089SBarry Smith   /* shift up all the later entries in this row */
492580bdb30SBarry Smith   ierr  = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
493580bdb30SBarry Smith   ierr  = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
49436bd2089SBarry Smith   rp[i] = col;
49536bd2089SBarry Smith   bap   = ap +  bs2*i;
49636bd2089SBarry Smith   if (roworiented) {
49736bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
49836bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
49936bd2089SBarry Smith         bap[jj] = *value++;
50036bd2089SBarry Smith       }
50136bd2089SBarry Smith     }
50236bd2089SBarry Smith   } else {
50336bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50436bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
50536bd2089SBarry Smith         *bap++ = *value++;
50636bd2089SBarry Smith       }
50736bd2089SBarry Smith     }
50836bd2089SBarry Smith   }
50936bd2089SBarry Smith   noinsert2:;
51036bd2089SBarry Smith   ailen[row] = nrow;
51136bd2089SBarry Smith   PetscFunctionReturn(0);
51236bd2089SBarry Smith }
51336bd2089SBarry Smith 
51436bd2089SBarry Smith /*
51536bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
51636bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
51736bd2089SBarry Smith */
518dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
519a30f8f8cSSatish Balay {
5200880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
521f15d580aSBarry Smith   const MatScalar *value;
522f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
523ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
524dfbe8321SBarry Smith   PetscErrorCode  ierr;
525899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
526476417e5SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
527476417e5SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5280880e062SHong Zhang 
529a30f8f8cSSatish Balay   PetscFunctionBegin;
5300880e062SHong Zhang   if (!barray) {
531785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
5320880e062SHong Zhang     baij->barray = barray;
5330880e062SHong Zhang   }
5340880e062SHong Zhang 
5350880e062SHong Zhang   if (roworiented) {
5360880e062SHong Zhang     stepval = (n-1)*bs;
5370880e062SHong Zhang   } else {
5380880e062SHong Zhang     stepval = (m-1)*bs;
5390880e062SHong Zhang   }
5400880e062SHong Zhang   for (i=0; i<m; i++) {
5410880e062SHong Zhang     if (im[i] < 0) continue;
5422515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
543bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
5440880e062SHong Zhang #endif
5450880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5460880e062SHong Zhang       row = im[i] - rstart;
5470880e062SHong Zhang       for (j=0; j<n; j++) {
548f3f98c53SJed Brown         if (im[i] > in[j]) {
549f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
550e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
551f3f98c53SJed Brown         }
5520880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5530880e062SHong Zhang         if ((roworiented) && (n == 1)) {
554f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5550880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
556f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5570880e062SHong Zhang         } else { /* Here a copy is required */
5580880e062SHong Zhang           if (roworiented) {
5590880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5600880e062SHong Zhang           } else {
5610880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5620880e062SHong Zhang           }
5630880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5640880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5650880e062SHong Zhang               *barray++ = *value++;
5660880e062SHong Zhang             }
5670880e062SHong Zhang           }
5680880e062SHong Zhang           barray -=bs2;
5690880e062SHong Zhang         }
5700880e062SHong Zhang 
5710880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5720880e062SHong Zhang           col  = in[j] - cstart;
57336bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
57426fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
5752515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
576bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5770880e062SHong Zhang #endif
5780880e062SHong Zhang         else {
5790880e062SHong Zhang           if (mat->was_assembled) {
5800880e062SHong Zhang             if (!baij->colmap) {
581ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5820880e062SHong Zhang             }
5830880e062SHong Zhang 
5842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5850880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5861302d50aSBarry Smith             { PetscInt data;
5870880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
588e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5890880e062SHong Zhang             }
5900880e062SHong Zhang #else
591e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5920880e062SHong Zhang #endif
5930880e062SHong Zhang #endif
5940880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5950880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5960880e062SHong Zhang             col  = (col - 1)/bs;
5970880e062SHong Zhang #else
5980880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5990880e062SHong Zhang #endif
6000880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
601ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
6020880e062SHong Zhang               col  = in[j];
6030880e062SHong Zhang             }
60426fbe8dcSKarl Rupp           } else col = in[j];
60536bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
6060880e062SHong Zhang         }
6070880e062SHong Zhang       }
6080880e062SHong Zhang     } else {
609bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6100880e062SHong Zhang       if (!baij->donotstash) {
6110880e062SHong Zhang         if (roworiented) {
6120880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6130880e062SHong Zhang         } else {
6140880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6150880e062SHong Zhang         }
6160880e062SHong Zhang       }
6170880e062SHong Zhang     }
6180880e062SHong Zhang   }
6190880e062SHong Zhang   PetscFunctionReturn(0);
620a30f8f8cSSatish Balay }
621a30f8f8cSSatish Balay 
6221302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
623a30f8f8cSSatish Balay {
624f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
6256849ba73SBarry Smith   PetscErrorCode ierr;
626d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
627d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
628a30f8f8cSSatish Balay 
629a30f8f8cSSatish Balay   PetscFunctionBegin;
630a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
631e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
632e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
633a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
634a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
635a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
636e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
637e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
638a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
639a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
640c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
641a30f8f8cSSatish Balay         } else {
642a30f8f8cSSatish Balay           if (!baij->colmap) {
643ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
644a30f8f8cSSatish Balay           }
645a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
646a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
647a30f8f8cSSatish Balay           data--;
648a30f8f8cSSatish Balay #else
649a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
650a30f8f8cSSatish Balay #endif
651a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
652a30f8f8cSSatish Balay           else {
653a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
654e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
655a30f8f8cSSatish Balay           }
656a30f8f8cSSatish Balay         }
657a30f8f8cSSatish Balay       }
658f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
659a30f8f8cSSatish Balay   }
660a30f8f8cSSatish Balay   PetscFunctionReturn(0);
661a30f8f8cSSatish Balay }
662a30f8f8cSSatish Balay 
663dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
664a30f8f8cSSatish Balay {
665a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
666dfbe8321SBarry Smith   PetscErrorCode ierr;
667a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
668a30f8f8cSSatish Balay 
669a30f8f8cSSatish Balay   PetscFunctionBegin;
670a30f8f8cSSatish Balay   if (baij->size == 1) {
671a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
672a30f8f8cSSatish Balay   } else {
673a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
674785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
675a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
676a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
677a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
678a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
679b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6808f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
681a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6820b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6830b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6840b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6850b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
686899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
687d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6880b8dc8d2SHong Zhang       MatScalar    *v;
6890b8dc8d2SHong Zhang 
690dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
691580bdb30SBarry Smith       ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr);
6920b8dc8d2SHong Zhang       /* Amat */
6930b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6940b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6950b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6960b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6970b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6980b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6990b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7000b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7010b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7020b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7030b8dc8d2SHong Zhang               /* non-diagonal block */
7040b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
7050b8dc8d2SHong Zhang             }
7060b8dc8d2SHong Zhang           }
7070b8dc8d2SHong Zhang         }
70851f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7090b8dc8d2SHong Zhang       }
7100b8dc8d2SHong Zhang       /* Bmat */
7110b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7120b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7130b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7140b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7150b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7160b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7170b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7180b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7190b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7200b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7210b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7220b8dc8d2SHong Zhang             }
7230b8dc8d2SHong Zhang           }
7240b8dc8d2SHong Zhang         }
72551f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7260b8dc8d2SHong Zhang       }
727b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7280b8dc8d2SHong Zhang       *norm = 0.0;
729d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7300b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7310b8dc8d2SHong Zhang       }
73274ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
733f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
734a30f8f8cSSatish Balay   }
735a30f8f8cSSatish Balay   PetscFunctionReturn(0);
736a30f8f8cSSatish Balay }
737a30f8f8cSSatish Balay 
738dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
739a30f8f8cSSatish Balay {
740a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
741dfbe8321SBarry Smith   PetscErrorCode ierr;
7421302d50aSBarry Smith   PetscInt       nstash,reallocs;
743a30f8f8cSSatish Balay 
744a30f8f8cSSatish Balay   PetscFunctionBegin;
74526fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
746a30f8f8cSSatish Balay 
747d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
7481e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
749a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7501e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
751a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7521e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   PetscFunctionReturn(0);
754a30f8f8cSSatish Balay }
755a30f8f8cSSatish Balay 
756dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
757a30f8f8cSSatish Balay {
758a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
759a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
7606849ba73SBarry Smith   PetscErrorCode ierr;
76113f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
762e44c0bd4SBarry Smith   PetscInt       *row,*col;
763ace3abfcSBarry Smith   PetscBool      other_disassembled;
76413f74950SBarry Smith   PetscMPIInt    n;
765ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
766a30f8f8cSSatish Balay   MatScalar      *val;
767a30f8f8cSSatish Balay 
76891c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
769a30f8f8cSSatish Balay   PetscFunctionBegin;
7704cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
771a30f8f8cSSatish Balay     while (1) {
772a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
773a30f8f8cSSatish Balay       if (!flg) break;
774a30f8f8cSSatish Balay 
775a30f8f8cSSatish Balay       for (i=0; i<n;) {
776a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
77726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
77826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
77926fbe8dcSKarl Rupp         }
780a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
781a30f8f8cSSatish Balay         else       ncols = n-i;
782a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7834b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
784a30f8f8cSSatish Balay         i    = j;
785a30f8f8cSSatish Balay       }
786a30f8f8cSSatish Balay     }
787a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
788a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
789a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
790a30f8f8cSSatish Balay        restore the original flags */
791a30f8f8cSSatish Balay     r1 = baij->roworiented;
792a30f8f8cSSatish Balay     r2 = a->roworiented;
79391c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
79426fbe8dcSKarl Rupp 
795a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
796a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
79726fbe8dcSKarl Rupp 
79891c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
799a30f8f8cSSatish Balay     while (1) {
800a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
801a30f8f8cSSatish Balay       if (!flg) break;
802a30f8f8cSSatish Balay 
803a30f8f8cSSatish Balay       for (i=0; i<n;) {
804a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
80526fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
80626fbe8dcSKarl Rupp           if (row[j] != rstart) break;
80726fbe8dcSKarl Rupp         }
808a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
809a30f8f8cSSatish Balay         else       ncols = n-i;
8104b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
811a30f8f8cSSatish Balay         i    = j;
812a30f8f8cSSatish Balay       }
813a30f8f8cSSatish Balay     }
814a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
81526fbe8dcSKarl Rupp 
816a30f8f8cSSatish Balay     baij->roworiented = r1;
817a30f8f8cSSatish Balay     a->roworiented    = r2;
81826fbe8dcSKarl Rupp 
81991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
820a30f8f8cSSatish Balay   }
821a30f8f8cSSatish Balay 
822a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
823a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
824a30f8f8cSSatish Balay 
825a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
826a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
827a30f8f8cSSatish Balay   /*
828a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
829a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
830a30f8f8cSSatish Balay   */
831a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
832b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
833a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
834ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
835a30f8f8cSSatish Balay     }
836a30f8f8cSSatish Balay   }
837a30f8f8cSSatish Balay 
838a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
83940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
840a30f8f8cSSatish Balay   }
841a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
842a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
843a30f8f8cSSatish Balay 
84474ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
84526fbe8dcSKarl Rupp 
846a30f8f8cSSatish Balay   baij->rowvalues = 0;
8474f9cfa9eSBarry Smith 
8484f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8494f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
850e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
851b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
852e56f5c9eSBarry Smith   }
853a30f8f8cSSatish Balay   PetscFunctionReturn(0);
854a30f8f8cSSatish Balay }
855a30f8f8cSSatish Balay 
856dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8579804daf3SBarry Smith #include <petscdraw.h>
8586849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
859a30f8f8cSSatish Balay {
860a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
861dfbe8321SBarry Smith   PetscErrorCode    ierr;
862d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8637da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
864ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
865b0a32e0cSBarry Smith   PetscViewer       sviewer;
866f3ef73ceSBarry Smith   PetscViewerFormat format;
867a30f8f8cSSatish Balay 
868a30f8f8cSSatish Balay   PetscFunctionBegin;
869251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
870251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
87132077d6dSBarry Smith   if (iascii) {
872b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
873456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
874a30f8f8cSSatish Balay       MatInfo info;
875ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
876a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8771575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
878b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
879a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
880e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
881a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
882e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
883b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8841575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
88507d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
886a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
887a30f8f8cSSatish Balay       PetscFunctionReturn(0);
888fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
88977431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
890a30f8f8cSSatish Balay       PetscFunctionReturn(0);
891c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
892c1490034SHong Zhang       PetscFunctionReturn(0);
893a30f8f8cSSatish Balay     }
894a30f8f8cSSatish Balay   }
895a30f8f8cSSatish Balay 
896a30f8f8cSSatish Balay   if (isdraw) {
897b0a32e0cSBarry Smith     PetscDraw draw;
898ace3abfcSBarry Smith     PetscBool isnull;
899b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
90045f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
90145f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
902a30f8f8cSSatish Balay   }
903a30f8f8cSSatish Balay 
9047da1fb6eSBarry Smith   {
905a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
906a30f8f8cSSatish Balay     Mat          A;
90765d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
90865d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
909d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
910a30f8f8cSSatish Balay     MatScalar    *a;
9113e219373SBarry Smith     const char   *matname;
912a30f8f8cSSatish Balay 
913f204ca49SKris Buschelman     /* Should this be the same type as mat? */
914ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
915a30f8f8cSSatish Balay     if (!rank) {
916f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
917a30f8f8cSSatish Balay     } else {
918f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
919a30f8f8cSSatish Balay     }
920f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
9210298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
9222b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
9233bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
924a30f8f8cSSatish Balay 
925a30f8f8cSSatish Balay     /* copy over the A part */
92665d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
927a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
928785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
929a30f8f8cSSatish Balay 
930a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
931e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
93226fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
933a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
934e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
935a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
936dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
93726fbe8dcSKarl Rupp           col++;
93826fbe8dcSKarl Rupp           a += bs;
939a30f8f8cSSatish Balay         }
940a30f8f8cSSatish Balay       }
941a30f8f8cSSatish Balay     }
942a30f8f8cSSatish Balay     /* copy over the B part */
94365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
94465d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
945a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
946e9f7bc9eSHong Zhang 
947e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
94826fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
949a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
950a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
951a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
952799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
95326fbe8dcSKarl Rupp           col++;
95426fbe8dcSKarl Rupp           a += bs;
955a30f8f8cSSatish Balay         }
956a30f8f8cSSatish Balay       }
957a30f8f8cSSatish Balay     }
958a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
959a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
960a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
961a30f8f8cSSatish Balay     /*
962a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
963b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
964a30f8f8cSSatish Balay     */
9653f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
966ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9673e219373SBarry Smith     if (!rank) {
968ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
969383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
970a30f8f8cSSatish Balay     }
9713f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9721575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9736bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
974a30f8f8cSSatish Balay   }
975a30f8f8cSSatish Balay   PetscFunctionReturn(0);
976a30f8f8cSSatish Balay }
977a30f8f8cSSatish Balay 
978d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer)
979d1654148SHong Zhang {
980d1654148SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)mat->data;
981d1654148SHong Zhang   Mat_SeqSBAIJ   *A = (Mat_SeqSBAIJ*)a->A->data;
982d1654148SHong Zhang   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
983d1654148SHong Zhang   PetscErrorCode ierr;
984d1654148SHong Zhang   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
985d1654148SHong Zhang   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
986d1654148SHong Zhang   int            fd;
987d1654148SHong Zhang   PetscScalar    *column_values;
988d1654148SHong Zhang   FILE           *file;
989d1654148SHong Zhang   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
990d1654148SHong Zhang   PetscInt       message_count,flowcontrolcount;
991d1654148SHong Zhang 
992d1654148SHong Zhang   PetscFunctionBegin;
993d1654148SHong Zhang   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
994d1654148SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
995d1654148SHong Zhang   nz   = bs2*(A->nz + B->nz);
996d1654148SHong Zhang   rlen = mat->rmap->n;
997d1654148SHong Zhang   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
998d1654148SHong Zhang   if (!rank) {
999d1654148SHong Zhang     header[0] = MAT_FILE_CLASSID;
1000d1654148SHong Zhang     header[1] = mat->rmap->N;
1001d1654148SHong Zhang     header[2] = mat->cmap->N;
1002d1654148SHong Zhang 
1003d1654148SHong Zhang     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1004d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1005d1654148SHong Zhang     /* get largest number of rows any processor has */
1006d1654148SHong Zhang     range = mat->rmap->range;
1007d1654148SHong Zhang     for (i=1; i<size; i++) {
1008d1654148SHong Zhang       rlen = PetscMax(rlen,range[i+1] - range[i]);
1009d1654148SHong Zhang     }
1010d1654148SHong Zhang   } else {
1011d1654148SHong Zhang     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1012d1654148SHong Zhang   }
1013d1654148SHong Zhang 
1014d1654148SHong Zhang   ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr);
1015d1654148SHong Zhang   /* compute lengths of each row  */
1016d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1017d1654148SHong Zhang     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1018d1654148SHong Zhang   }
1019d1654148SHong Zhang   /* store the row lengths to the file */
1020d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1021d1654148SHong Zhang   if (!rank) {
1022d1654148SHong Zhang     MPI_Status status;
1023d1654148SHong Zhang     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
1024d1654148SHong Zhang     rlen = (range[1] - range[0])/bs;
1025d1654148SHong Zhang     for (i=0; i<rlen; i++) {
1026d1654148SHong Zhang       for (j=0; j<bs; j++) {
1027d1654148SHong Zhang         row_lens[i*bs+j] = bs*crow_lens[i];
1028d1654148SHong Zhang       }
1029d1654148SHong Zhang     }
1030d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1031d1654148SHong Zhang     for (i=1; i<size; i++) {
1032d1654148SHong Zhang       rlen = (range[i+1] - range[i])/bs;
1033d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1034d1654148SHong Zhang       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1035d1654148SHong Zhang       for (k=0; k<rlen; k++) {
1036d1654148SHong Zhang         for (j=0; j<bs; j++) {
1037d1654148SHong Zhang           row_lens[k*bs+j] = bs*crow_lens[k];
1038d1654148SHong Zhang         }
1039d1654148SHong Zhang       }
1040d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1041d1654148SHong Zhang     }
1042d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1043d1654148SHong Zhang     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1044d1654148SHong Zhang   } else {
1045d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1046d1654148SHong Zhang     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1047d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1048d1654148SHong Zhang   }
1049d1654148SHong Zhang   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1050d1654148SHong Zhang 
1051d1654148SHong Zhang   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1052d1654148SHong Zhang      information needed to make it for each row from a block row. This does require more communication but still not more than
1053d1654148SHong Zhang      the communication needed for the nonzero values  */
1054d1654148SHong Zhang   nzmax = nz; /*  space a largest processor needs */
1055d1654148SHong Zhang   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1056d1654148SHong Zhang   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
1057d1654148SHong Zhang   cnt   = 0;
1058d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1059d1654148SHong Zhang     pcnt = cnt;
1060d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1061d1654148SHong Zhang       if ((col = garray[B->j[j]]) > cstart) break;
1062d1654148SHong Zhang       for (l=0; l<bs; l++) {
1063d1654148SHong Zhang         column_indices[cnt++] = bs*col+l;
1064d1654148SHong Zhang       }
1065d1654148SHong Zhang     }
1066d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1067d1654148SHong Zhang       for (l=0; l<bs; l++) {
1068d1654148SHong Zhang         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1069d1654148SHong Zhang       }
1070d1654148SHong Zhang     }
1071d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1072d1654148SHong Zhang       for (l=0; l<bs; l++) {
1073d1654148SHong Zhang         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1074d1654148SHong Zhang       }
1075d1654148SHong Zhang     }
1076d1654148SHong Zhang     len = cnt - pcnt;
1077d1654148SHong Zhang     for (k=1; k<bs; k++) {
1078580bdb30SBarry Smith       ierr = PetscArraycpy(&column_indices[cnt],&column_indices[pcnt],len);CHKERRQ(ierr);
1079d1654148SHong Zhang       cnt += len;
1080d1654148SHong Zhang     }
1081d1654148SHong Zhang   }
1082d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1083d1654148SHong Zhang 
1084d1654148SHong Zhang   /* store the columns to the file */
1085d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1086d1654148SHong Zhang   if (!rank) {
1087d1654148SHong Zhang     MPI_Status status;
1088d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1089d1654148SHong Zhang     for (i=1; i<size; i++) {
1090d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1091d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1092d1654148SHong Zhang       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1093d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1094d1654148SHong Zhang     }
1095d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1096d1654148SHong Zhang   } else {
1097d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1098d1654148SHong Zhang     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1099d1654148SHong Zhang     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1100d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1101d1654148SHong Zhang   }
1102d1654148SHong Zhang   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1103d1654148SHong Zhang 
1104d1654148SHong Zhang   /* load up the numerical values */
1105d1654148SHong Zhang   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1106d1654148SHong Zhang   cnt  = 0;
1107d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1108d1654148SHong Zhang     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1109d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1110d1654148SHong Zhang       if (garray[B->j[j]] > cstart) break;
1111d1654148SHong Zhang       for (l=0; l<bs; l++) {
1112d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1113d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1114d1654148SHong Zhang         }
1115d1654148SHong Zhang       }
1116d1654148SHong Zhang       cnt += bs;
1117d1654148SHong Zhang     }
1118d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1119d1654148SHong Zhang       for (l=0; l<bs; l++) {
1120d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1121d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1122d1654148SHong Zhang         }
1123d1654148SHong Zhang       }
1124d1654148SHong Zhang       cnt += bs;
1125d1654148SHong Zhang     }
1126d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1127d1654148SHong Zhang       for (l=0; l<bs; l++) {
1128d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1129d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1130d1654148SHong Zhang         }
1131d1654148SHong Zhang       }
1132d1654148SHong Zhang       cnt += bs;
1133d1654148SHong Zhang     }
1134d1654148SHong Zhang     cnt += (bs-1)*rlen;
1135d1654148SHong Zhang   }
1136d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1137d1654148SHong Zhang 
1138d1654148SHong Zhang   /* store the column values to the file */
1139d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1140d1654148SHong Zhang   if (!rank) {
1141d1654148SHong Zhang     MPI_Status status;
1142d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1143d1654148SHong Zhang     for (i=1; i<size; i++) {
1144d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1145d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1146d1654148SHong Zhang       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1147d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1148d1654148SHong Zhang     }
1149d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1150d1654148SHong Zhang   } else {
1151d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1152d1654148SHong Zhang     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1153d1654148SHong Zhang     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1154d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1155d1654148SHong Zhang   }
1156d1654148SHong Zhang   ierr = PetscFree(column_values);CHKERRQ(ierr);
1157d1654148SHong Zhang 
1158d1654148SHong Zhang   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1159d1654148SHong Zhang   if (file) {
1160d1654148SHong Zhang     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1161d1654148SHong Zhang   }
1162d1654148SHong Zhang   PetscFunctionReturn(0);
1163d1654148SHong Zhang }
1164d1654148SHong Zhang 
1165dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
1166a30f8f8cSSatish Balay {
1167dfbe8321SBarry Smith   PetscErrorCode ierr;
1168ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
1169a30f8f8cSSatish Balay 
1170a30f8f8cSSatish Balay   PetscFunctionBegin;
1171251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1172251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1173251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1174251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1175d1654148SHong Zhang   if (iascii || isdraw || issocket) {
1176a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1177d1654148SHong Zhang   } else if (isbinary) {
1178d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1179a30f8f8cSSatish Balay   }
1180a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1181a30f8f8cSSatish Balay }
1182a30f8f8cSSatish Balay 
1183dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1184a30f8f8cSSatish Balay {
1185a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1186dfbe8321SBarry Smith   PetscErrorCode ierr;
1187a30f8f8cSSatish Balay 
1188a30f8f8cSSatish Balay   PetscFunctionBegin;
1189a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1190d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
1191a30f8f8cSSatish Balay #endif
1192a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1193a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
11946bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
11956bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1196a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
11976bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1198a30f8f8cSSatish Balay #else
119905b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1200a30f8f8cSSatish Balay #endif
120105b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
12026bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
12036bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
12046bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
12056bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
12066bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
12076bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
12086bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
12096bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
12105755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
121105b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
121205b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
12136bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
12146bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
12156bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1216ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
121705b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1218a30f8f8cSSatish Balay #endif
121959ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
122059ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1221899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1222bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1223901853e0SKris Buschelman 
1224dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1225bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1226bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1227bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1228d2c30c80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
12296214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
12306214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
12316214f412SHong Zhang #endif
1232b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr);
1233b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr);
1234a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1235a30f8f8cSSatish Balay }
1236a30f8f8cSSatish Balay 
1237547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1238547795f9SHong Zhang {
1239547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1240547795f9SHong Zhang   PetscErrorCode    ierr;
1241547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
12426de40e93SBarry Smith   PetscScalar       *from;
12436de40e93SBarry Smith   const PetscScalar *x;
1244547795f9SHong Zhang 
1245547795f9SHong Zhang   PetscFunctionBegin;
1246547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1247e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1248547795f9SHong Zhang 
1249547795f9SHong Zhang   /* diagonal part */
1250547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1251547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1252547795f9SHong Zhang 
1253547795f9SHong Zhang   /* subdiagonal part */
1254547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1255547795f9SHong Zhang 
1256547795f9SHong Zhang   /* copy x into the vec slvec0 */
1257547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
12586de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1259547795f9SHong Zhang 
1260580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1261547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
12626de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1263547795f9SHong Zhang 
1264547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1265547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1266547795f9SHong Zhang   /* supperdiagonal part */
1267547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1268547795f9SHong Zhang   PetscFunctionReturn(0);
1269547795f9SHong Zhang }
1270547795f9SHong Zhang 
1271dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1272a9d4b620SHong Zhang {
1273a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1274dfbe8321SBarry Smith   PetscErrorCode    ierr;
1275d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1276d9ca1df4SBarry Smith   PetscScalar       *from;
1277d9ca1df4SBarry Smith   const PetscScalar *x;
1278a9d4b620SHong Zhang 
1279a9d4b620SHong Zhang   PetscFunctionBegin;
1280a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1281e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1282a9d4b620SHong Zhang 
1283a9d4b620SHong Zhang   /* diagonal part */
1284a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1285fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1286a9d4b620SHong Zhang 
1287a9d4b620SHong Zhang   /* subdiagonal part */
1288a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1289fc165ae2SBarry Smith 
1290a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
12911ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1292d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1293a9d4b620SHong Zhang 
1294580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1295fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1296d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1297fc165ae2SBarry Smith 
1298fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1299ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1300a9d4b620SHong Zhang   /* supperdiagonal part */
1301a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1302a9d4b620SHong Zhang   PetscFunctionReturn(0);
1303a9d4b620SHong Zhang }
1304a9d4b620SHong Zhang 
1305dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1306a30f8f8cSSatish Balay {
1307a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1308dfbe8321SBarry Smith   PetscErrorCode ierr;
13091302d50aSBarry Smith   PetscInt       nt;
1310a30f8f8cSSatish Balay 
1311a30f8f8cSSatish Balay   PetscFunctionBegin;
1312a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1313e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1314e7e72b3dSBarry Smith 
1315a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1316e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
131765d70643SHong Zhang 
1318ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1319b941877fSHong Zhang   /* do diagonal part */
1320b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1321b941877fSHong Zhang   /* do supperdiagonal part */
1322ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1323b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1324b941877fSHong Zhang   /* do subdiagonal part */
1325b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1326ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1327ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1328a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1329a30f8f8cSSatish Balay }
1330a30f8f8cSSatish Balay 
1331dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1332a30f8f8cSSatish Balay {
1333de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1334dfbe8321SBarry Smith   PetscErrorCode    ierr;
1335d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1336d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1337d9ca1df4SBarry Smith   const PetscScalar *x;
1338a9d4b620SHong Zhang 
1339a9d4b620SHong Zhang   PetscFunctionBegin;
1340a9d4b620SHong Zhang   /*
1341ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
13420ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1343a9d4b620SHong Zhang   */
1344a9d4b620SHong Zhang   /* diagonal part */
1345a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
13462dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1347a9d4b620SHong Zhang 
1348a9d4b620SHong Zhang   /* subdiagonal part */
1349a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1350a9d4b620SHong Zhang 
1351a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
13521ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1353d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1354580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
13551ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1356a9d4b620SHong Zhang 
1357ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1358d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1359ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1360a9d4b620SHong Zhang 
1361a9d4b620SHong Zhang   /* supperdiagonal part */
1362a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1363a9d4b620SHong Zhang   PetscFunctionReturn(0);
1364a9d4b620SHong Zhang }
1365a9d4b620SHong Zhang 
1366dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1367a9d4b620SHong Zhang {
1368a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1369dfbe8321SBarry Smith   PetscErrorCode ierr;
1370a30f8f8cSSatish Balay 
1371a30f8f8cSSatish Balay   PetscFunctionBegin;
1372ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1373b941877fSHong Zhang   /* do diagonal part */
1374b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1375b941877fSHong Zhang   /* do supperdiagonal part */
1376ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1377de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1378de8b6608SHong Zhang 
1379b941877fSHong Zhang   /* do subdiagonal part */
1380a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1381ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1382ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1383a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1384a30f8f8cSSatish Balay }
1385a30f8f8cSSatish Balay 
1386a30f8f8cSSatish Balay /*
1387a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1388a30f8f8cSSatish Balay    diagonal block
1389a30f8f8cSSatish Balay */
1390dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1391a30f8f8cSSatish Balay {
1392a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1393dfbe8321SBarry Smith   PetscErrorCode ierr;
1394a30f8f8cSSatish Balay 
1395a30f8f8cSSatish Balay   PetscFunctionBegin;
1396e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1397a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1398a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1399a30f8f8cSSatish Balay }
1400a30f8f8cSSatish Balay 
1401f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1402a30f8f8cSSatish Balay {
1403a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1404dfbe8321SBarry Smith   PetscErrorCode ierr;
1405a30f8f8cSSatish Balay 
1406a30f8f8cSSatish Balay   PetscFunctionBegin;
1407f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1408f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1409a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1410a30f8f8cSSatish Balay }
1411a30f8f8cSSatish Balay 
14121302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1413a30f8f8cSSatish Balay {
1414d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1415d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1416d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1417d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1418d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1419899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1420d0d4cfc2SHong Zhang 
1421a30f8f8cSSatish Balay   PetscFunctionBegin;
1422e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1423d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1424d0d4cfc2SHong Zhang 
1425d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1426d0d4cfc2SHong Zhang     /*
1427d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1428d0d4cfc2SHong Zhang     */
1429d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1430d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1431d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1432d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1433d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
143426fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1435d0d4cfc2SHong Zhang     }
1436dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1437d0d4cfc2SHong Zhang   }
1438d0d4cfc2SHong Zhang 
1439e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1440d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1441d0d4cfc2SHong Zhang 
1442d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1443d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1444d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1445d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1446d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1447d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1448d0d4cfc2SHong Zhang 
1449d0d4cfc2SHong Zhang   cmap = mat->garray;
1450d0d4cfc2SHong Zhang   if (v  || idx) {
1451d0d4cfc2SHong Zhang     if (nztot) {
1452d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1453d0d4cfc2SHong Zhang       PetscInt imark = -1;
1454d0d4cfc2SHong Zhang       if (v) {
1455d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1456d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1457d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1458d0d4cfc2SHong Zhang           else break;
1459d0d4cfc2SHong Zhang         }
1460d0d4cfc2SHong Zhang         imark = i;
1461d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1462d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1463d0d4cfc2SHong Zhang       }
1464d0d4cfc2SHong Zhang       if (idx) {
1465d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1466d0d4cfc2SHong Zhang         if (imark > -1) {
1467d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1468d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1469d0d4cfc2SHong Zhang           }
1470d0d4cfc2SHong Zhang         } else {
1471d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
147226fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1473d0d4cfc2SHong Zhang             else break;
1474d0d4cfc2SHong Zhang           }
1475d0d4cfc2SHong Zhang           imark = i;
1476d0d4cfc2SHong Zhang         }
1477d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1478d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1479d0d4cfc2SHong Zhang       }
1480d0d4cfc2SHong Zhang     } else {
1481d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1482d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1483d0d4cfc2SHong Zhang     }
1484d0d4cfc2SHong Zhang   }
1485d0d4cfc2SHong Zhang   *nz  = nztot;
1486d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1487d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1488a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1489a30f8f8cSSatish Balay }
1490a30f8f8cSSatish Balay 
14911302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1492a30f8f8cSSatish Balay {
1493a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1494a30f8f8cSSatish Balay 
1495a30f8f8cSSatish Balay   PetscFunctionBegin;
1496e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1497a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1498a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1499a30f8f8cSSatish Balay }
1500a30f8f8cSSatish Balay 
1501d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1502d0d4cfc2SHong Zhang {
1503d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1504d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1505d0d4cfc2SHong Zhang 
1506d0d4cfc2SHong Zhang   PetscFunctionBegin;
1507d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1508d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1509d0d4cfc2SHong Zhang }
1510d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1511d0d4cfc2SHong Zhang {
1512d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1513d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1514d0d4cfc2SHong Zhang 
1515d0d4cfc2SHong Zhang   PetscFunctionBegin;
1516d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1517d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1518d0d4cfc2SHong Zhang }
1519d0d4cfc2SHong Zhang 
152099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
152199cafbc1SBarry Smith {
152299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
152399cafbc1SBarry Smith   PetscErrorCode ierr;
152499cafbc1SBarry Smith 
152599cafbc1SBarry Smith   PetscFunctionBegin;
152699cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
152799cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
152899cafbc1SBarry Smith   PetscFunctionReturn(0);
152999cafbc1SBarry Smith }
153099cafbc1SBarry Smith 
153199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
153299cafbc1SBarry Smith {
153399cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
153499cafbc1SBarry Smith   PetscErrorCode ierr;
153599cafbc1SBarry Smith 
153699cafbc1SBarry Smith   PetscFunctionBegin;
153799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
153899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
153999cafbc1SBarry Smith   PetscFunctionReturn(0);
154099cafbc1SBarry Smith }
154199cafbc1SBarry Smith 
15427dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
154336032a97SHong Zhang    Input: isrow       - distributed(parallel),
154436032a97SHong Zhang           iscol_local - locally owned (seq)
154536032a97SHong Zhang */
154636032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
15478f46ffcaSHong Zhang {
15488f46ffcaSHong Zhang   PetscErrorCode ierr;
15498f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
15508f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
155136032a97SHong Zhang 
155236032a97SHong Zhang   PetscFunctionBegin;
15538f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
15548f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
15551098a8e8SHong Zhang   if (sz1 > sz2) {
15561098a8e8SHong Zhang     *flg = PETSC_FALSE;
15571098a8e8SHong Zhang     PetscFunctionReturn(0);
15581098a8e8SHong Zhang   }
15598f46ffcaSHong Zhang 
15608f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
15618f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15628f46ffcaSHong Zhang 
15638f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
15648f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
1565580bdb30SBarry Smith   ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr);
1566580bdb30SBarry Smith   ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr);
15678f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
15688f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
15698f46ffcaSHong Zhang 
15708f46ffcaSHong Zhang   nmatch=0;
15718f46ffcaSHong Zhang   k     = 0;
15728f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
15738f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
15748f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
15758f46ffcaSHong Zhang         k = j; nmatch++;
15768f46ffcaSHong Zhang         break;
15778f46ffcaSHong Zhang       }
15788f46ffcaSHong Zhang     }
15798f46ffcaSHong Zhang   }
15808f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
15818f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15828f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
15838f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
15841098a8e8SHong Zhang   if (nmatch < sz1) {
15851098a8e8SHong Zhang     *flg = PETSC_FALSE;
15861098a8e8SHong Zhang   } else {
15871098a8e8SHong Zhang     *flg = PETSC_TRUE;
15881098a8e8SHong Zhang   }
158936032a97SHong Zhang   PetscFunctionReturn(0);
15908f46ffcaSHong Zhang }
159136032a97SHong Zhang 
15927dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
159336032a97SHong Zhang {
159436032a97SHong Zhang   PetscErrorCode ierr;
159536032a97SHong Zhang   IS             iscol_local;
159636032a97SHong Zhang   PetscInt       csize;
159736032a97SHong Zhang   PetscBool      isequal;
159836032a97SHong Zhang 
159936032a97SHong Zhang   PetscFunctionBegin;
160036032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
160136032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
160236032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
160336032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
160436032a97SHong Zhang   } else {
160536032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
160636032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
160736032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
16088f46ffcaSHong Zhang   }
16098f46ffcaSHong Zhang 
16107dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
16117dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
16128f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
16138f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
16148f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
16158f46ffcaSHong Zhang   }
16168f46ffcaSHong Zhang   PetscFunctionReturn(0);
16178f46ffcaSHong Zhang }
16188f46ffcaSHong Zhang 
1619dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1620a30f8f8cSSatish Balay {
1621a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1622dfbe8321SBarry Smith   PetscErrorCode ierr;
1623a30f8f8cSSatish Balay 
1624a30f8f8cSSatish Balay   PetscFunctionBegin;
1625a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1626a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1627a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1628a30f8f8cSSatish Balay }
1629a30f8f8cSSatish Balay 
1630dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1631a30f8f8cSSatish Balay {
1632a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1633a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1634dfbe8321SBarry Smith   PetscErrorCode ierr;
1635a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1636a30f8f8cSSatish Balay 
1637a30f8f8cSSatish Balay   PetscFunctionBegin;
1638d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
163926fbe8dcSKarl Rupp 
1640a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
164126fbe8dcSKarl Rupp 
1642a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1643a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
164426fbe8dcSKarl Rupp 
1645a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
164626fbe8dcSKarl Rupp 
1647a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1648a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1649a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1650a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1651a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1652a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1653a30f8f8cSSatish Balay     info->memory       = isend[3];
1654a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1655a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1656b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
165726fbe8dcSKarl Rupp 
1658a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1659a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1660a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1661a30f8f8cSSatish Balay     info->memory       = irecv[3];
1662a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1663a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1664b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
166526fbe8dcSKarl Rupp 
1666a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1667a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1668a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1669a30f8f8cSSatish Balay     info->memory       = irecv[3];
1670a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1671f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1672a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1673a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1674a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1675a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1676a30f8f8cSSatish Balay }
1677a30f8f8cSSatish Balay 
1678ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1679a30f8f8cSSatish Balay {
1680a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1681d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1682dfbe8321SBarry Smith   PetscErrorCode ierr;
1683a30f8f8cSSatish Balay 
1684a30f8f8cSSatish Balay   PetscFunctionBegin;
1685e98b92d7SKris Buschelman   switch (op) {
1686512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1687e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
168828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1689a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1690c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1691e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
169243674050SBarry Smith     MatCheckPreallocated(A,1);
16934e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16944e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1695e98b92d7SKris Buschelman     break;
1696e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
169743674050SBarry Smith     MatCheckPreallocated(A,1);
16984e0d8c25SBarry Smith     a->roworiented = flg;
169926fbe8dcSKarl Rupp 
17004e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
17014e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1702e98b92d7SKris Buschelman     break;
17034e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1704071fcb05SBarry Smith   case MAT_SORTED_FULL:
1705290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1706e98b92d7SKris Buschelman     break;
1707e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
17084e0d8c25SBarry Smith     a->donotstash = flg;
1709e98b92d7SKris Buschelman     break;
1710e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
17114e0d8c25SBarry Smith     a->ht_flag = flg;
1712e98b92d7SKris Buschelman     break;
17139a4540c5SBarry Smith   case MAT_HERMITIAN:
171443674050SBarry Smith     MatCheckPreallocated(A,1);
1715e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1716eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
17170f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1718547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
17190f2140c7SStefano Zampini #endif
1720eeffb40dSHong Zhang     break;
1721ffa07934SHong Zhang   case MAT_SPD:
1722ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1723ffa07934SHong Zhang     A->spd     = flg;
1724ffa07934SHong Zhang     if (flg) {
1725ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1726ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1727ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1728ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1729ffa07934SHong Zhang     }
1730ffa07934SHong Zhang     break;
173177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
173243674050SBarry Smith     MatCheckPreallocated(A,1);
1733eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1734eeffb40dSHong Zhang     break;
173577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
173643674050SBarry Smith     MatCheckPreallocated(A,1);
1737eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1738eeffb40dSHong Zhang     break;
17399a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1740e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1741290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
174277e54ba9SKris Buschelman     break;
1743d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
17444e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1745d0d4cfc2SHong Zhang     break;
1746d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
17474e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1748d0d4cfc2SHong Zhang     break;
1749d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
17504e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1751d0d4cfc2SHong Zhang     break;
1752e98b92d7SKris Buschelman   default:
1753e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1754a30f8f8cSSatish Balay   }
1755a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1756a30f8f8cSSatish Balay }
1757a30f8f8cSSatish Balay 
1758fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1759a30f8f8cSSatish Balay {
1760dfbe8321SBarry Smith   PetscErrorCode ierr;
17616e111a19SKarl Rupp 
1762a30f8f8cSSatish Balay   PetscFunctionBegin;
1763cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1764999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1765cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1766cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1767fc4dec0aSBarry Smith   }
17688115998fSBarry Smith   PetscFunctionReturn(0);
1769a30f8f8cSSatish Balay }
1770a30f8f8cSSatish Balay 
1771dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1772a30f8f8cSSatish Balay {
1773a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1774a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1775dfbe8321SBarry Smith   PetscErrorCode ierr;
17765e90f9d9SHong Zhang   PetscInt       nv,m,n;
1777ace3abfcSBarry Smith   PetscBool      flg;
1778a30f8f8cSSatish Balay 
1779a30f8f8cSSatish Balay   PetscFunctionBegin;
1780a30f8f8cSSatish Balay   if (ll != rr) {
1781b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1782e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1783a30f8f8cSSatish Balay   }
1784b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1785b3bf805bSHong Zhang 
17865e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1787e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1788b3bf805bSHong Zhang 
17895e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1790e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
17915e90f9d9SHong Zhang 
1792ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17935e90f9d9SHong Zhang 
17945e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
17950298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
17965e90f9d9SHong Zhang 
17975e90f9d9SHong Zhang   /* scale the diagonal part */
1798a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1799a30f8f8cSSatish Balay 
18005e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1801ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18020298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1803a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1804a30f8f8cSSatish Balay }
1805a30f8f8cSSatish Balay 
1806dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1807a30f8f8cSSatish Balay {
1808f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1809dfbe8321SBarry Smith   PetscErrorCode ierr;
1810a30f8f8cSSatish Balay 
1811a30f8f8cSSatish Balay   PetscFunctionBegin;
1812a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1813a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1814a30f8f8cSSatish Balay }
1815a30f8f8cSSatish Balay 
18166849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1817a30f8f8cSSatish Balay 
1818ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1819a30f8f8cSSatish Balay {
1820a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1821a30f8f8cSSatish Balay   Mat            a,b,c,d;
1822ace3abfcSBarry Smith   PetscBool      flg;
1823dfbe8321SBarry Smith   PetscErrorCode ierr;
1824a30f8f8cSSatish Balay 
1825a30f8f8cSSatish Balay   PetscFunctionBegin;
1826a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1827a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1828a30f8f8cSSatish Balay 
1829a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1830abc0a331SBarry Smith   if (flg) {
1831a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1832a30f8f8cSSatish Balay   }
1833b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1834a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1835a30f8f8cSSatish Balay }
1836a30f8f8cSSatish Balay 
18373c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
18383c896bc6SHong Zhang {
18393c896bc6SHong Zhang   PetscErrorCode ierr;
18404c7a3774SStefano Zampini   PetscBool      isbaij;
18413c896bc6SHong Zhang 
18423c896bc6SHong Zhang   PetscFunctionBegin;
18434c7a3774SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr);
18444c7a3774SStefano Zampini   if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
18453c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18463c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1847d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
18483c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1849d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
18503c896bc6SHong Zhang   } else {
18514c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
18524c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
18534c7a3774SStefano Zampini 
18543c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18553c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18563c896bc6SHong Zhang   }
1857cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
18583c896bc6SHong Zhang   PetscFunctionReturn(0);
18593c896bc6SHong Zhang }
18603c896bc6SHong Zhang 
18614994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1862273d9f13SBarry Smith {
1863dfbe8321SBarry Smith   PetscErrorCode ierr;
1864273d9f13SBarry Smith 
1865273d9f13SBarry Smith   PetscFunctionBegin;
1866535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1867273d9f13SBarry Smith   PetscFunctionReturn(0);
1868273d9f13SBarry Smith }
1869a5e6ed63SBarry Smith 
18704fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18714fe895cdSHong Zhang {
18724fe895cdSHong Zhang   PetscErrorCode ierr;
18734fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
18744fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18754fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
18764fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
18774fe895cdSHong Zhang 
18784fe895cdSHong Zhang   PetscFunctionBegin;
18794fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18804fe895cdSHong Zhang     PetscScalar alpha = a;
18814fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
18824fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1883c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
18848b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
18854fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
18864fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1887c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
18888b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1889a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1890ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1891ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1892ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1893ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
18944fe895cdSHong Zhang   } else {
18954de5dceeSHong Zhang     Mat      B;
18964de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
18974de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1898d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
18994de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
19004de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
19014de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
19024de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
19034de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
19044de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
19054de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
19064de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
19074de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
19084de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
19094de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
19104de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
191128be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
19124de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
19134de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1914d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
19154de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
19164fe895cdSHong Zhang   }
19174fe895cdSHong Zhang   PetscFunctionReturn(0);
19184fe895cdSHong Zhang }
19194fe895cdSHong Zhang 
19207dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1921a5e6ed63SBarry Smith {
19226849ba73SBarry Smith   PetscErrorCode ierr;
19231302d50aSBarry Smith   PetscInt       i;
1924afebec48SHong Zhang   PetscBool      flg;
1925a5e6ed63SBarry Smith 
19266849ba73SBarry Smith   PetscFunctionBegin;
19277dae84e0SHong Zhang   ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1928a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1929a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1930afebec48SHong Zhang     if (!flg) {
1931b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1932a5e6ed63SBarry Smith     }
19334dcd73b1SHong Zhang   }
1934a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1935a5e6ed63SBarry Smith }
1936a5e6ed63SBarry Smith 
19377d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
19387d68702bSBarry Smith {
19397d68702bSBarry Smith   PetscErrorCode ierr;
19407d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
19416f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
19427d68702bSBarry Smith 
19437d68702bSBarry Smith   PetscFunctionBegin;
19446f33a894SBarry Smith   if (!Y->preallocated) {
19457d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
19466f33a894SBarry Smith   } else if (!aij->nz) {
1947b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
19486f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1949b83222d8SBarry Smith     aij->nonew = nonew;
19507d68702bSBarry Smith   }
19517d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
19527d68702bSBarry Smith   PetscFunctionReturn(0);
19537d68702bSBarry Smith }
19547d68702bSBarry Smith 
19553b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
19563b49f96aSBarry Smith {
19573b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
19583b49f96aSBarry Smith   PetscErrorCode ierr;
19593b49f96aSBarry Smith 
19603b49f96aSBarry Smith   PetscFunctionBegin;
19613b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
19623b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
19633b49f96aSBarry Smith   if (d) {
19643b49f96aSBarry Smith     PetscInt rstart;
19653b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
19663b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
19673b49f96aSBarry Smith 
19683b49f96aSBarry Smith   }
19693b49f96aSBarry Smith   PetscFunctionReturn(0);
19703b49f96aSBarry Smith }
19713b49f96aSBarry Smith 
1972a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1973a5b7ff6bSBarry Smith {
1974a5b7ff6bSBarry Smith   PetscFunctionBegin;
1975a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1976a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1977a5b7ff6bSBarry Smith }
19783b49f96aSBarry Smith 
1979a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
19803964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1981a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1982a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1983a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
198497304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1985431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1986431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1987a30f8f8cSSatish Balay                                        0,
1988a30f8f8cSSatish Balay                                        0,
1989a30f8f8cSSatish Balay                                        0,
199097304618SKris Buschelman                                /* 10*/ 0,
1991a30f8f8cSSatish Balay                                        0,
1992a30f8f8cSSatish Balay                                        0,
199341f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1994a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
199597304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1996a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1997a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1998a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1999a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
200097304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
2001a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
2002a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
2003a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
2004d519adbfSMatthew Knepley                                /* 24*/ 0,
2005a30f8f8cSSatish Balay                                        0,
2006a30f8f8cSSatish Balay                                        0,
2007a30f8f8cSSatish Balay                                        0,
2008a30f8f8cSSatish Balay                                        0,
20094994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
2010b5df2d14SHong Zhang                                        0,
2011a30f8f8cSSatish Balay                                        0,
2012a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
2013a30f8f8cSSatish Balay                                        0,
2014d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
2015a30f8f8cSSatish Balay                                        0,
2016a30f8f8cSSatish Balay                                        0,
2017a30f8f8cSSatish Balay                                        0,
2018a30f8f8cSSatish Balay                                        0,
2019d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
20207dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
2021d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
2022a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
20233c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
2024d519adbfSMatthew Knepley                                /* 44*/ 0,
2025a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
20267d68702bSBarry Smith                                        MatShift_MPISBAIJ,
2027a30f8f8cSSatish Balay                                        0,
2028a30f8f8cSSatish Balay                                        0,
2029f73d5cc4SBarry Smith                                /* 49*/ 0,
2030a30f8f8cSSatish Balay                                        0,
2031a30f8f8cSSatish Balay                                        0,
2032a30f8f8cSSatish Balay                                        0,
2033a30f8f8cSSatish Balay                                        0,
2034d519adbfSMatthew Knepley                                /* 54*/ 0,
2035a30f8f8cSSatish Balay                                        0,
2036a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
2037a30f8f8cSSatish Balay                                        0,
2038a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
20397dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
2040a30f8f8cSSatish Balay                                        0,
2041a30f8f8cSSatish Balay                                        0,
2042357abbc8SBarry Smith                                        0,
204324d5174aSHong Zhang                                        0,
2044d519adbfSMatthew Knepley                                /* 64*/ 0,
204524d5174aSHong Zhang                                        0,
204624d5174aSHong Zhang                                        0,
204724d5174aSHong Zhang                                        0,
204824d5174aSHong Zhang                                        0,
2049d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
205024d5174aSHong Zhang                                        0,
2051*28d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
205297304618SKris Buschelman                                        0,
205397304618SKris Buschelman                                        0,
2054d519adbfSMatthew Knepley                                /* 74*/ 0,
205597304618SKris Buschelman                                        0,
205697304618SKris Buschelman                                        0,
205797304618SKris Buschelman                                        0,
205897304618SKris Buschelman                                        0,
2059d519adbfSMatthew Knepley                                /* 79*/ 0,
206097304618SKris Buschelman                                        0,
206197304618SKris Buschelman                                        0,
206297304618SKris Buschelman                                        0,
20635bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
2064d519adbfSMatthew Knepley                                /* 84*/ 0,
2065865e5f61SKris Buschelman                                        0,
2066865e5f61SKris Buschelman                                        0,
2067865e5f61SKris Buschelman                                        0,
2068865e5f61SKris Buschelman                                        0,
2069d519adbfSMatthew Knepley                                /* 89*/ 0,
2070865e5f61SKris Buschelman                                        0,
2071865e5f61SKris Buschelman                                        0,
2072865e5f61SKris Buschelman                                        0,
2073865e5f61SKris Buschelman                                        0,
2074d519adbfSMatthew Knepley                                /* 94*/ 0,
2075865e5f61SKris Buschelman                                        0,
2076865e5f61SKris Buschelman                                        0,
207799cafbc1SBarry Smith                                        0,
207899cafbc1SBarry Smith                                        0,
2079d519adbfSMatthew Knepley                                /* 99*/ 0,
208099cafbc1SBarry Smith                                        0,
208199cafbc1SBarry Smith                                        0,
208299cafbc1SBarry Smith                                        0,
208399cafbc1SBarry Smith                                        0,
2084d519adbfSMatthew Knepley                                /*104*/ 0,
208599cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
2086d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
2087d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
208895936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
208995936485SShri Abhyankar                                /*109*/ 0,
209095936485SShri Abhyankar                                        0,
209195936485SShri Abhyankar                                        0,
209295936485SShri Abhyankar                                        0,
20933b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
209495936485SShri Abhyankar                                /*114*/ 0,
209595936485SShri Abhyankar                                        0,
209695936485SShri Abhyankar                                        0,
209795936485SShri Abhyankar                                        0,
209895936485SShri Abhyankar                                        0,
209995936485SShri Abhyankar                                /*119*/ 0,
210095936485SShri Abhyankar                                        0,
210195936485SShri Abhyankar                                        0,
21023964eb88SJed Brown                                        0,
21033964eb88SJed Brown                                        0,
21043964eb88SJed Brown                                /*124*/ 0,
21053964eb88SJed Brown                                        0,
21063964eb88SJed Brown                                        0,
21073964eb88SJed Brown                                        0,
21083964eb88SJed Brown                                        0,
21093964eb88SJed Brown                                /*129*/ 0,
21103964eb88SJed Brown                                        0,
21113964eb88SJed Brown                                        0,
21123964eb88SJed Brown                                        0,
21133964eb88SJed Brown                                        0,
21143964eb88SJed Brown                                /*134*/ 0,
21153964eb88SJed Brown                                        0,
21163964eb88SJed Brown                                        0,
21173964eb88SJed Brown                                        0,
21183964eb88SJed Brown                                        0,
211946533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2120f9426fe0SMark Adams                                        0,
212159f5e6ceSHong Zhang                                        0,
212259f5e6ceSHong Zhang                                        0,
212359f5e6ceSHong Zhang                                        0,
212459f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
212599cafbc1SBarry Smith };
2126a30f8f8cSSatish Balay 
2127b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2128a23d5eceSKris Buschelman {
2129476417e5SBarry Smith   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
2130dfbe8321SBarry Smith   PetscErrorCode ierr;
2131535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
21325d2a9ed1SStefano Zampini   PetscMPIInt    size;
2133a23d5eceSKris Buschelman 
2134a23d5eceSKris Buschelman   PetscFunctionBegin;
213533d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
213626283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
213726283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2138e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2139476417e5SBarry Smith   if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N);
2140476417e5SBarry Smith   if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n);
2141899cda47SBarry Smith 
2142d0f46423SBarry Smith   mbs = B->rmap->n/bs;
2143d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
2144c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
2145a23d5eceSKris Buschelman 
2146d0f46423SBarry Smith   B->rmap->bs = bs;
2147a23d5eceSKris Buschelman   b->bs2      = bs*bs;
2148a23d5eceSKris Buschelman   b->mbs      = mbs;
2149a23d5eceSKris Buschelman   b->Mbs      = Mbs;
2150de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
2151de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
2152a23d5eceSKris Buschelman 
2153a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2154d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2155a23d5eceSKris Buschelman   }
2156d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2157d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2158a23d5eceSKris Buschelman 
2159d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2160d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2161a23d5eceSKris Buschelman 
2162cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2163cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2164cb7b82ddSBarry Smith #else
2165cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2166cb7b82ddSBarry Smith #endif
2167cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2168cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2169cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2170cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
2171cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
2172cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
2173cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
2174cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
2175cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
2176cb7b82ddSBarry Smith 
2177cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
21785d2a9ed1SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2179cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2180cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
21815d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2182cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2183cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2184cb7b82ddSBarry Smith 
2185526dfc15SBarry Smith   if (!B->preallocated) {
2186f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2187d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
21889c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
21893bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2190ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2191526dfc15SBarry Smith   }
2192a23d5eceSKris Buschelman 
2193526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2194526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
219526fbe8dcSKarl Rupp 
2196526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2197cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2198cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2199a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2200a23d5eceSKris Buschelman }
2201a23d5eceSKris Buschelman 
2202dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2203dfb205c3SBarry Smith {
220402106b30SBarry Smith   PetscInt       m,rstart,cend;
22050cd7f59aSBarry Smith   PetscInt       i,j,d,nz,bd, nz_max=0,*d_nnz=0,*o_nnz=0;
2206dfb205c3SBarry Smith   const PetscInt *JJ    =0;
2207dfb205c3SBarry Smith   PetscScalar    *values=0;
2208bb80cfbbSStefano Zampini   PetscBool      roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented;
2209dfb205c3SBarry Smith   PetscErrorCode ierr;
22103bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2211dfb205c3SBarry Smith 
2212dfb205c3SBarry Smith   PetscFunctionBegin;
2213ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2214dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2215dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2216dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2217dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2218e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2219dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2220dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2221dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2222dfb205c3SBarry Smith 
2223dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2224dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2225dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2226dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2227dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
22280cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2229dfb205c3SBarry Smith     JJ     = jj + ii[i];
22300cd7f59aSBarry Smith     bd     = 0;
2231dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
22320cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2233dfb205c3SBarry Smith       JJ++;
22340cd7f59aSBarry Smith       bd++;
2235dfb205c3SBarry Smith     }
2236dfb205c3SBarry Smith     d  = 0;
2237dfb205c3SBarry Smith     for (; j<nz; j++) {
2238dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2239dfb205c3SBarry Smith       d++;
2240dfb205c3SBarry Smith     }
2241dfb205c3SBarry Smith     d_nnz[i] = d;
22420cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
22430cd7f59aSBarry Smith     nz       = nz - bd;
22440cd7f59aSBarry Smith     nz_max = PetscMax(nz_max,nz);
2245dfb205c3SBarry Smith   }
2246dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2247bb80cfbbSStefano Zampini   ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
2248dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2249dfb205c3SBarry Smith 
2250dfb205c3SBarry Smith   values = (PetscScalar*)V;
2251dfb205c3SBarry Smith   if (!values) {
2252580bdb30SBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2253dfb205c3SBarry Smith   }
2254dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2255dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2256dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2257dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2258bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2259dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2260dfb205c3SBarry Smith       ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2261bb80cfbbSStefano Zampini     } else {                    /* block ordering does not match so we can only insert one block at a time. */
2262bb80cfbbSStefano Zampini       PetscInt j;
22630cd7f59aSBarry Smith       for (j=0; j<ncols; j++) {
22640cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
22650cd7f59aSBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
22660cd7f59aSBarry Smith       }
22670cd7f59aSBarry Smith     }
2268dfb205c3SBarry Smith   }
2269dfb205c3SBarry Smith 
2270dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
22713bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
22723bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
2273dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2274dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22753bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
22763bd0feecSPierre Jolivet 
22777827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2278dfb205c3SBarry Smith   PetscFunctionReturn(0);
2279dfb205c3SBarry Smith }
2280dfb205c3SBarry Smith 
22810bad9183SKris Buschelman /*MC
2282fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2283828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2284828413b8SBarry Smith    the matrix is stored.
2285828413b8SBarry Smith 
2286828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2287828413b8SBarry Smith    can call MatSetOption(Mat, MAT_HERMITIAN);
22880bad9183SKris Buschelman 
22890bad9183SKris Buschelman    Options Database Keys:
22900bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
22910bad9183SKris Buschelman 
2292476417e5SBarry Smith    Notes:
2293476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2294476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2295476417e5SBarry Smith 
22960bad9183SKris Buschelman    Level: beginner
22970bad9183SKris Buschelman 
2298476417e5SBarry Smith .seealso: MatCreateMPISBAIJ(), MATSEQSBAIJ, MatType
22990bad9183SKris Buschelman M*/
23000bad9183SKris Buschelman 
23018cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2302b5df2d14SHong Zhang {
2303b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2304dfbe8321SBarry Smith   PetscErrorCode ierr;
230594ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2306b5df2d14SHong Zhang 
2307b5df2d14SHong Zhang   PetscFunctionBegin;
2308b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2309b0a32e0cSBarry Smith   B->data = (void*)b;
2310b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2311b5df2d14SHong Zhang 
2312b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2313b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2314b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2315b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
231626fbe8dcSKarl Rupp 
2317ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2318ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2319b5df2d14SHong Zhang 
2320b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2321854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2322b5df2d14SHong Zhang 
2323b5df2d14SHong Zhang   /* build cache for off array entries formed */
2324ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
232526fbe8dcSKarl Rupp 
2326b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
23270298fd71SBarry Smith   b->colmap      = NULL;
23280298fd71SBarry Smith   b->garray      = NULL;
2329b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2330b5df2d14SHong Zhang 
2331b5df2d14SHong Zhang   /* stuff used in block assembly */
2332b5df2d14SHong Zhang   b->barray = 0;
2333b5df2d14SHong Zhang 
2334b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2335b5df2d14SHong Zhang   b->lvec    = 0;
2336b5df2d14SHong Zhang   b->Mvctx   = 0;
233740781036SHong Zhang   b->slvec0  = 0;
233840781036SHong Zhang   b->slvec0b = 0;
233940781036SHong Zhang   b->slvec1  = 0;
234040781036SHong Zhang   b->slvec1a = 0;
234140781036SHong Zhang   b->slvec1b = 0;
234240781036SHong Zhang   b->sMvctx  = 0;
2343b5df2d14SHong Zhang 
2344b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2345b5df2d14SHong Zhang   b->rowindices   = 0;
2346b5df2d14SHong Zhang   b->rowvalues    = 0;
2347b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2348b5df2d14SHong Zhang 
2349b5df2d14SHong Zhang   /* hash table stuff */
2350b5df2d14SHong Zhang   b->ht           = 0;
2351b5df2d14SHong Zhang   b->hd           = 0;
2352b5df2d14SHong Zhang   b->ht_size      = 0;
2353b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2354b5df2d14SHong Zhang   b->ht_fact      = 0;
2355b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2356b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2357b5df2d14SHong Zhang 
23587dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
23597a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
23607a868f3eSHong Zhang 
236159ffdab8SBarry Smith   b->in_loc = 0;
236259ffdab8SBarry Smith   b->v_loc  = 0;
236359ffdab8SBarry Smith   b->n_loc  = 0;
236494ae4db5SBarry Smith 
2365bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2366bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2367bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2368bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
23696214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
23706214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
23716214f412SHong Zhang #endif
2372*28d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
2373*28d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
2374aa5a9175SDahai Guo 
237523ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
237623ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
237723ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
237823ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
23799899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
238026fbe8dcSKarl Rupp 
238113647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
238213647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
238313647f61SHong Zhang 
238417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
238594ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
238694ae4db5SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
238794ae4db5SBarry Smith   if (flg) {
238894ae4db5SBarry Smith     PetscReal fact = 1.39;
238994ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
239094ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
239194ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
239294ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
239394ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
239494ae4db5SBarry Smith   }
239594ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2396b5df2d14SHong Zhang   PetscFunctionReturn(0);
2397b5df2d14SHong Zhang }
2398b5df2d14SHong Zhang 
2399209238afSKris Buschelman /*MC
2400002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2401209238afSKris Buschelman 
2402209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2403209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2404209238afSKris Buschelman 
2405209238afSKris Buschelman    Options Database Keys:
2406209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2407209238afSKris Buschelman 
2408209238afSKris Buschelman   Level: beginner
2409209238afSKris Buschelman 
2410209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2411209238afSKris Buschelman M*/
2412209238afSKris Buschelman 
2413b5df2d14SHong Zhang /*@C
2414b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2415b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2416b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2417b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2418b5df2d14SHong Zhang 
2419b5df2d14SHong Zhang    Collective on Mat
2420b5df2d14SHong Zhang 
2421b5df2d14SHong Zhang    Input Parameters:
24221c4f3114SJed Brown +  B - the matrix
2423bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2424bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2425b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2426b5df2d14SHong Zhang            submatrix  (same for all local rows)
2427b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
24286d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
24290298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
243095742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2431b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2432b5df2d14SHong Zhang            submatrix (same for all local rows).
2433b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2434c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
24350298fd71SBarry Smith            (possibly different for each block row) or NULL.
2436b5df2d14SHong Zhang 
2437b5df2d14SHong Zhang 
2438b5df2d14SHong Zhang    Options Database Keys:
2439a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2440b5df2d14SHong Zhang                      block calculations (much slower)
2441a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2442b5df2d14SHong Zhang 
2443b5df2d14SHong Zhang    Notes:
2444b5df2d14SHong Zhang 
2445b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2446b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2447b5df2d14SHong Zhang 
244849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
244949a6f317SBarry Smith 
2450b5df2d14SHong Zhang    Storage Information:
2451b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2452b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2453b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2454b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2455b5df2d14SHong Zhang 
2456b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2457b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
24580298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2459b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2460b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2461b5df2d14SHong Zhang 
2462aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2463aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2464aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2465aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2466aa95bbe8SBarry Smith 
2467b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2468b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2469b5df2d14SHong Zhang 
2470b5df2d14SHong Zhang .vb
2471b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2472a4b1a0f6SJed Brown           --------------------------
2473c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2474c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2475c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2476a4b1a0f6SJed Brown           --------------------------
2477b5df2d14SHong Zhang .ve
2478b5df2d14SHong Zhang 
2479b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2480b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
24816d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
24826d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2483b5df2d14SHong Zhang 
24846d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
24856d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2486c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2487c2fc9fa9SBarry Smith 
2488b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2489b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2490b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2491b5df2d14SHong Zhang    matrices.
2492b5df2d14SHong Zhang 
2493b5df2d14SHong Zhang    Level: intermediate
2494b5df2d14SHong Zhang 
2495ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2496b5df2d14SHong Zhang @*/
24977087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2498b5df2d14SHong Zhang {
24994ac538c5SBarry Smith   PetscErrorCode ierr;
2500b5df2d14SHong Zhang 
2501b5df2d14SHong Zhang   PetscFunctionBegin;
25026ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
25036ba663aaSJed Brown   PetscValidType(B,1);
25046ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
25054ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2506b5df2d14SHong Zhang   PetscFunctionReturn(0);
2507b5df2d14SHong Zhang }
2508b5df2d14SHong Zhang 
2509a30f8f8cSSatish Balay /*@C
251069b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2511a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2512a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2513a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2514a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2515a30f8f8cSSatish Balay 
2516d083f849SBarry Smith    Collective
2517a30f8f8cSSatish Balay 
2518a30f8f8cSSatish Balay    Input Parameters:
2519a30f8f8cSSatish Balay +  comm - MPI communicator
2520bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2521bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2522a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2523a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2524a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2525a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2526a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2527a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2528a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2529a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2530a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2531a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2532a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
25336d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
25340298fd71SBarry Smith            (possibly different for each block block row) or NULL.
253595742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
253695742e49SBarry Smith            set its value even if it is zero.
2537a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2538a30f8f8cSSatish Balay            submatrix (same for all local rows).
2539a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2540a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
25410298fd71SBarry Smith            each block row) or NULL.
2542a30f8f8cSSatish Balay 
2543a30f8f8cSSatish Balay    Output Parameter:
2544a30f8f8cSSatish Balay .  A - the matrix
2545a30f8f8cSSatish Balay 
2546a30f8f8cSSatish Balay    Options Database Keys:
2547a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2548a30f8f8cSSatish Balay                      block calculations (much slower)
2549a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2550a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2551a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2552a30f8f8cSSatish Balay 
2553175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2554f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2555175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2556175b88e8SBarry Smith 
2557a30f8f8cSSatish Balay    Notes:
2558d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
25596d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2560d1be2dadSMatthew Knepley 
2561a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2562a30f8f8cSSatish Balay    (possibly both).
2563a30f8f8cSSatish Balay 
2564a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2565a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2566a30f8f8cSSatish Balay 
256749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
256849a6f317SBarry Smith 
2569a30f8f8cSSatish Balay    Storage Information:
2570a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2571a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2572a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2573a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2574a30f8f8cSSatish Balay 
2575a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2576a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
25770298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2578a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2579a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2580a30f8f8cSSatish Balay 
2581a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2582a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2583a30f8f8cSSatish Balay 
2584a30f8f8cSSatish Balay .vb
2585a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2586a4b1a0f6SJed Brown           --------------------------
2587c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2588c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2589c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2590a4b1a0f6SJed Brown           --------------------------
2591a30f8f8cSSatish Balay .ve
2592a30f8f8cSSatish Balay 
2593a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2594a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
25956d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
25966d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2597a30f8f8cSSatish Balay 
25986d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
25996d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2600a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2601a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2602a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2603a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2604a30f8f8cSSatish Balay    matrices.
2605a30f8f8cSSatish Balay 
2606a30f8f8cSSatish Balay    Level: intermediate
2607a30f8f8cSSatish Balay 
260869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2609a30f8f8cSSatish Balay @*/
2610a30f8f8cSSatish Balay 
261169b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2612a30f8f8cSSatish Balay {
26136849ba73SBarry Smith   PetscErrorCode ierr;
26141302d50aSBarry Smith   PetscMPIInt    size;
2615a30f8f8cSSatish Balay 
2616a30f8f8cSSatish Balay   PetscFunctionBegin;
2617f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2618f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2619273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2620273d9f13SBarry Smith   if (size > 1) {
2621b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2622b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2623273d9f13SBarry Smith   } else {
2624273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2625273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2626273d9f13SBarry Smith   }
2627a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2628a30f8f8cSSatish Balay }
2629a30f8f8cSSatish Balay 
2630a30f8f8cSSatish Balay 
26316849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2632a30f8f8cSSatish Balay {
2633a30f8f8cSSatish Balay   Mat            mat;
2634a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2635dfbe8321SBarry Smith   PetscErrorCode ierr;
2636d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2637387bc808SHong Zhang   PetscScalar    *array;
2638a30f8f8cSSatish Balay 
2639a30f8f8cSSatish Balay   PetscFunctionBegin;
2640a30f8f8cSSatish Balay   *newmat = 0;
264126fbe8dcSKarl Rupp 
2642ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2643d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
26447adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
26451e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
26461e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2647e1b6402fSHong Zhang 
2648d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2649273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
265082327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
26517fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26527fff6886SHong Zhang 
2653b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2654a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2655a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2656a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2657a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2658a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2659a30f8f8cSSatish Balay 
2660a30f8f8cSSatish Balay   a->size         = oldmat->size;
2661a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2662a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2663a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2664a30f8f8cSSatish Balay   a->rowindices   = 0;
2665a30f8f8cSSatish Balay   a->rowvalues    = 0;
2666a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2667a30f8f8cSSatish Balay   a->barray       = 0;
2668899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2669899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2670899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2671899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2672a30f8f8cSSatish Balay 
2673a30f8f8cSSatish Balay   /* hash table stuff */
2674a30f8f8cSSatish Balay   a->ht           = 0;
2675a30f8f8cSSatish Balay   a->hd           = 0;
2676a30f8f8cSSatish Balay   a->ht_size      = 0;
2677a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2678a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2679a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2680a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2681a30f8f8cSSatish Balay 
2682580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr);
2683a30f8f8cSSatish Balay   if (oldmat->colmap) {
2684a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2685a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2686a30f8f8cSSatish Balay #else
2687854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
26883bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2689580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
2690a30f8f8cSSatish Balay #endif
2691a30f8f8cSSatish Balay   } else a->colmap = 0;
2692387bc808SHong Zhang 
2693a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2694785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
26953bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2696580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
2697a30f8f8cSSatish Balay   } else a->garray = 0;
2698a30f8f8cSSatish Balay 
2699ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2700a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
27013bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2702a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
27033bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
270482327fa8SHong Zhang 
270582327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
27063bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
270782327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
27083bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2709387bc808SHong Zhang 
2710387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
27111ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2712778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2713778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
27141ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
27151ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2716778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
27171ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
27183bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
27193bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
27203bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
27213bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
27223bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2723387bc808SHong Zhang 
2724387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2725387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2726387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
27273bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
272882327fa8SHong Zhang 
2729a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
27303bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2731a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
27323bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2733140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2734a30f8f8cSSatish Balay   *newmat = mat;
2735a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2736a30f8f8cSSatish Balay }
2737a30f8f8cSSatish Balay 
2738112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
273995936485SShri Abhyankar {
274095936485SShri Abhyankar   PetscErrorCode ierr;
274195936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
274295936485SShri Abhyankar   PetscScalar    *vals,*buf;
2743ce94432eSBarry Smith   MPI_Comm       comm;
274495936485SShri Abhyankar   MPI_Status     status;
2745adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2746adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
274795936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
27483059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
274995936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2750461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
275195936485SShri Abhyankar   int            fd;
27527f489da9SVaclav Hapla   PetscBool      isbinary;
275395936485SShri Abhyankar 
275495936485SShri Abhyankar   PetscFunctionBegin;
27557f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
27567f489da9SVaclav Hapla   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name);
27577f489da9SVaclav Hapla 
2758c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2759c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2760ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
27610298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
27620298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
276395936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
27643059b6faSBarry Smith   if (bs < 0) bs = 1;
276595936485SShri Abhyankar 
276695936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
276795936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
276895936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
27695872f025SBarry Smith   if (!rank) {
27709860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,(char*)header,4,NULL,PETSC_INT);CHKERRQ(ierr);
277195936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
277202f61395SBarry Smith     if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
277395936485SShri Abhyankar   }
277495936485SShri Abhyankar 
277595936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
277626fbe8dcSKarl Rupp   M    = header[1];
277726fbe8dcSKarl Rupp   N    = header[2];
277895936485SShri Abhyankar 
277995936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2780461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2781461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
278295936485SShri Abhyankar 
278395936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
278495936485SShri Abhyankar 
278595936485SShri Abhyankar   /*
278695936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
278795936485SShri Abhyankar      divisible by the blocksize
278895936485SShri Abhyankar   */
278995936485SShri Abhyankar   Mbs        = M/bs;
279095936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
279195936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
279295936485SShri Abhyankar   else                  Mbs++;
279395936485SShri Abhyankar   if (extra_rows &&!rank) {
279495936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
279595936485SShri Abhyankar   }
279695936485SShri Abhyankar 
279795936485SShri Abhyankar   /* determine ownership of all rows */
279895936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
279995936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
280095936485SShri Abhyankar     m   = mbs*bs;
280195936485SShri Abhyankar   } else { /* User Set */
280295936485SShri Abhyankar     m   = newmat->rmap->n;
280395936485SShri Abhyankar     mbs = m/bs;
280495936485SShri Abhyankar   }
2805dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
28064dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
280795936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
280895936485SShri Abhyankar   rowners[0] = 0;
280995936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
281095936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
281195936485SShri Abhyankar   rstart = rowners[rank];
281295936485SShri Abhyankar   rend   = rowners[rank+1];
281395936485SShri Abhyankar 
281495936485SShri Abhyankar   /* distribute row lengths to all processors */
2815785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
281695936485SShri Abhyankar   if (!rank) {
2817854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
28189860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,rowlengths,M,NULL,PETSC_INT);CHKERRQ(ierr);
281995936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2820785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
282195936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
282295936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
282395936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
282495936485SShri Abhyankar   } else {
282595936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
282695936485SShri Abhyankar   }
282795936485SShri Abhyankar 
282895936485SShri Abhyankar   if (!rank) {   /* procs[0] */
282995936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2830580bdb30SBarry Smith     ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr);
283195936485SShri Abhyankar     for (i=0; i<size; i++) {
283295936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
283395936485SShri Abhyankar         procsnz[i] += rowlengths[j];
283495936485SShri Abhyankar       }
283595936485SShri Abhyankar     }
283695936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
283795936485SShri Abhyankar 
283895936485SShri Abhyankar     /* determine max buffer needed and allocate it */
283995936485SShri Abhyankar     maxnz = 0;
284095936485SShri Abhyankar     for (i=0; i<size; i++) {
284195936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
284295936485SShri Abhyankar     }
2843785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
284495936485SShri Abhyankar 
284595936485SShri Abhyankar     /* read in my part of the matrix column indices  */
284695936485SShri Abhyankar     nz     = procsnz[0];
2847785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
284895936485SShri Abhyankar     mycols = ibuf;
284995936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
28509860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,mycols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
285126fbe8dcSKarl Rupp     if (size == 1) {
285226fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
285326fbe8dcSKarl Rupp     }
285495936485SShri Abhyankar 
285595936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
285695936485SShri Abhyankar     for (i=1; i<size-1; i++) {
285795936485SShri Abhyankar       nz   = procsnz[i];
28589860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
285995936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
286095936485SShri Abhyankar     }
286195936485SShri Abhyankar     /* read in the stuff for the last proc */
286295936485SShri Abhyankar     if (size != 1) {
286395936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
28649860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
286595936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
286695936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
286795936485SShri Abhyankar     }
286895936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
286995936485SShri Abhyankar   } else {  /* procs[i], i>0 */
287095936485SShri Abhyankar     /* determine buffer space needed for message */
287195936485SShri Abhyankar     nz = 0;
287226fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2873785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
287495936485SShri Abhyankar     mycols = ibuf;
287595936485SShri Abhyankar     /* receive message of column indices*/
287695936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
287795936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
287895936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
287995936485SShri Abhyankar   }
288095936485SShri Abhyankar 
288195936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2882dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2883580bdb30SBarry Smith   ierr     = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
288495936485SShri Abhyankar   rowcount = 0;
288595936485SShri Abhyankar   nzcount  = 0;
288695936485SShri Abhyankar   for (i=0; i<mbs; i++) {
288795936485SShri Abhyankar     dcount  = 0;
288895936485SShri Abhyankar     odcount = 0;
288995936485SShri Abhyankar     for (j=0; j<bs; j++) {
289095936485SShri Abhyankar       kmax = locrowlens[rowcount];
289195936485SShri Abhyankar       for (k=0; k<kmax; k++) {
289295936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
289395936485SShri Abhyankar         if (!mask[tmp]) {
289495936485SShri Abhyankar           mask[tmp] = 1;
289595936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
289695936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
289795936485SShri Abhyankar         }
289895936485SShri Abhyankar       }
289995936485SShri Abhyankar       rowcount++;
290095936485SShri Abhyankar     }
290195936485SShri Abhyankar 
290295936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
290395936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
290495936485SShri Abhyankar 
290595936485SShri Abhyankar     /* zero out the mask elements we set */
290695936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
290795936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
290895936485SShri Abhyankar   }
290995936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
291095936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
29116816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
291295936485SShri Abhyankar 
291395936485SShri Abhyankar   if (!rank) {
2914785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
291595936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
291695936485SShri Abhyankar     nz     = procsnz[0];
291795936485SShri Abhyankar     vals   = buf;
291895936485SShri Abhyankar     mycols = ibuf;
291995936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
29209860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
292126fbe8dcSKarl Rupp     if (size == 1) {
292226fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
292326fbe8dcSKarl Rupp     }
292495936485SShri Abhyankar 
292595936485SShri Abhyankar     /* insert into matrix */
292695936485SShri Abhyankar     jj = rstart*bs;
292795936485SShri Abhyankar     for (i=0; i<m; i++) {
292895936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
292995936485SShri Abhyankar       mycols += locrowlens[i];
293095936485SShri Abhyankar       vals   += locrowlens[i];
293195936485SShri Abhyankar       jj++;
293295936485SShri Abhyankar     }
293395936485SShri Abhyankar 
293495936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
293595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
293695936485SShri Abhyankar       nz   = procsnz[i];
293795936485SShri Abhyankar       vals = buf;
29389860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
293995936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
294095936485SShri Abhyankar     }
294195936485SShri Abhyankar     /* the last proc */
294295936485SShri Abhyankar     if (size != 1) {
294395936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
294495936485SShri Abhyankar       vals = buf;
29459860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
294695936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
294795936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
294895936485SShri Abhyankar     }
294995936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
295095936485SShri Abhyankar 
295195936485SShri Abhyankar   } else {
295295936485SShri Abhyankar     /* receive numeric values */
2953785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
295495936485SShri Abhyankar 
295595936485SShri Abhyankar     /* receive message of values*/
295695936485SShri Abhyankar     vals   = buf;
295795936485SShri Abhyankar     mycols = ibuf;
295895936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
295995936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
296095936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
296195936485SShri Abhyankar 
296295936485SShri Abhyankar     /* insert into matrix */
296395936485SShri Abhyankar     jj = rstart*bs;
296495936485SShri Abhyankar     for (i=0; i<m; i++) {
296595936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
296695936485SShri Abhyankar       mycols += locrowlens[i];
296795936485SShri Abhyankar       vals   += locrowlens[i];
296895936485SShri Abhyankar       jj++;
296995936485SShri Abhyankar     }
297095936485SShri Abhyankar   }
297195936485SShri Abhyankar 
297295936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
297395936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
297495936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
297595936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
297695936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
297795936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
297895936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
297995936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
298095936485SShri Abhyankar   PetscFunctionReturn(0);
298195936485SShri Abhyankar }
298295936485SShri Abhyankar 
2983dcf5cc72SBarry Smith /*XXXXX@
2984a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2985a30f8f8cSSatish Balay 
2986a30f8f8cSSatish Balay    Input Parameters:
2987a30f8f8cSSatish Balay .  mat  - the matrix
2988a30f8f8cSSatish Balay .  fact - factor
2989a30f8f8cSSatish Balay 
2990c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2991a30f8f8cSSatish Balay 
2992a30f8f8cSSatish Balay    Level: advanced
2993a30f8f8cSSatish Balay 
2994a30f8f8cSSatish Balay   Notes:
2995a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2996a30f8f8cSSatish Balay 
2997a30f8f8cSSatish Balay .seealso: MatSetOption()
2998dcf5cc72SBarry Smith @XXXXX*/
2999dcf5cc72SBarry Smith 
300024d5174aSHong Zhang 
3001985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
300224d5174aSHong Zhang {
300324d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
3004f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
3005ca54ac64SHong Zhang   PetscReal      atmp;
300687828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
3007dfbe8321SBarry Smith   PetscErrorCode ierr;
30081302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
30091302d50aSBarry Smith   PetscMPIInt    rank,size;
30101302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
301187828ca2SBarry Smith   PetscScalar    *va;
30128a1c53f2SBarry Smith   MatScalar      *ba;
3013f4c0e9e4SHong Zhang   MPI_Status     stat;
301424d5174aSHong Zhang 
301524d5174aSHong Zhang   PetscFunctionBegin;
3016e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
30170298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
30181ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
3019f4c0e9e4SHong Zhang 
3020ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
3021ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
3022f4c0e9e4SHong Zhang 
3023d0f46423SBarry Smith   bs  = A->rmap->bs;
3024f4c0e9e4SHong Zhang   mbs = a->mbs;
3025f4c0e9e4SHong Zhang   Mbs = a->Mbs;
3026f4c0e9e4SHong Zhang   ba  = b->a;
3027f4c0e9e4SHong Zhang   bi  = b->i;
3028f4c0e9e4SHong Zhang   bj  = b->j;
3029f4c0e9e4SHong Zhang 
3030f4c0e9e4SHong Zhang   /* find ownerships */
3031d0f46423SBarry Smith   rowners_bs = A->rmap->range;
3032f4c0e9e4SHong Zhang 
3033f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
3034580bdb30SBarry Smith   ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr);
3035f4c0e9e4SHong Zhang 
3036f4c0e9e4SHong Zhang   /* row_max for B */
3037b8475685SHong Zhang   if (rank != size-1) {
3038f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
3039f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
3040f4c0e9e4SHong Zhang       brow  = bs*i;
3041f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
3042f4c0e9e4SHong Zhang         bcol = bs*(*bj);
3043f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
3044ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
304504d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
3046f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
3047f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
3048ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
3049ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
3050f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
3051f4c0e9e4SHong Zhang           }
3052f4c0e9e4SHong Zhang         }
3053f4c0e9e4SHong Zhang         bj++;
3054f4c0e9e4SHong Zhang       }
3055f4c0e9e4SHong Zhang     }
3056f4c0e9e4SHong Zhang 
3057f4c0e9e4SHong Zhang     /* send values to its owners */
3058f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
3059f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
3060ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
3061ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
3062ca54ac64SHong Zhang     }
3063f4c0e9e4SHong Zhang   }
3064f4c0e9e4SHong Zhang 
3065f4c0e9e4SHong Zhang   /* receive values */
3066ca54ac64SHong Zhang   if (rank) {
3067f4c0e9e4SHong Zhang     rvalues = work;
3068ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
3069f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
3070ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
3071f4c0e9e4SHong Zhang       /* process values */
3072f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
3073ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
3074f4c0e9e4SHong Zhang       }
3075f4c0e9e4SHong Zhang     }
3076ca54ac64SHong Zhang   }
3077f4c0e9e4SHong Zhang 
30781ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
3079ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
308024d5174aSHong Zhang   PetscFunctionReturn(0);
308124d5174aSHong Zhang }
30822798e883SHong Zhang 
308341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
30842798e883SHong Zhang {
30852798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
3086dfbe8321SBarry Smith   PetscErrorCode    ierr;
3087d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
30883649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
3089ffe4fb16SHong Zhang   Vec               bb1;
30903649974fSBarry Smith   const PetscScalar *b;
3091ffe4fb16SHong Zhang 
3092ffe4fb16SHong Zhang   PetscFunctionBegin;
3093e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3094e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
3095ffe4fb16SHong Zhang 
3096a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
309741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3098a2b30743SBarry Smith     PetscFunctionReturn(0);
3099a2b30743SBarry Smith   }
3100a2b30743SBarry Smith 
3101ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
3102ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
310341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
3104ffe4fb16SHong Zhang       its--;
3105ffe4fb16SHong Zhang     }
3106ffe4fb16SHong Zhang 
3107ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
3108ffe4fb16SHong Zhang     while (its--) {
3109ffe4fb16SHong Zhang 
3110ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
3111ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3112ffe4fb16SHong Zhang 
3113ffe4fb16SHong Zhang       /* copy xx into slvec0a */
31141ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
31151ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3116580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr);
31171ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
3118ffe4fb16SHong Zhang 
3119efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
3120ffe4fb16SHong Zhang 
3121ffe4fb16SHong Zhang       /* copy bb into slvec1a */
31221ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
31233649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
3124580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr);
31251ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
3126ffe4fb16SHong Zhang 
3127ffe4fb16SHong Zhang       /* set slvec1b = 0 */
3128fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3129ffe4fb16SHong Zhang 
3130ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
31311ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3132a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
3133ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3134ffe4fb16SHong Zhang 
3135ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
3136ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
3137ffe4fb16SHong Zhang 
3138ffe4fb16SHong Zhang       /* local diagonal sweep */
313941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
3140ffe4fb16SHong Zhang     }
31416bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
3142fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
314341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3144fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
314541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3146fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
3147fa22f6d0SBarry Smith     Vec               xx1;
3148ace3abfcSBarry Smith     PetscBool         hasop;
314920f1ed55SBarry Smith     const PetscScalar *diag;
3150887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
315120f1ed55SBarry Smith     PetscInt          i,n;
3152fa22f6d0SBarry Smith 
3153fa22f6d0SBarry Smith     if (!mat->xx1) {
3154fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
3155fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
3156fa22f6d0SBarry Smith     }
3157fa22f6d0SBarry Smith     xx1 = mat->xx1;
3158fa22f6d0SBarry Smith     bb1 = mat->bb1;
3159fa22f6d0SBarry Smith 
316041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
3161fa22f6d0SBarry Smith 
3162fa22f6d0SBarry Smith     if (!mat->diag) {
3163effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
31642a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
3165fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
3166fa22f6d0SBarry Smith     }
3167fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
3168fa22f6d0SBarry Smith 
3169fa22f6d0SBarry Smith     if (hasop) {
3170fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
3171887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
317220f1ed55SBarry Smith     } else {
317320f1ed55SBarry Smith       /*
317420f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
317520f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
3176887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
317720f1ed55SBarry Smith       */
317820f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
31793649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
31803649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
318120f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
318220f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
3183887ee2caSBarry Smith       if (omega == 1.0) {
318426fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
318520f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
3186887ee2caSBarry Smith       } else {
318726fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
3188887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
3189887ee2caSBarry Smith       }
319020f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
31913649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
31923649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
319320f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
319420f1ed55SBarry Smith     }
3195fa22f6d0SBarry Smith 
3196fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
3197fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3198fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3199fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
3200fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3201580bdb30SBarry Smith     ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
3202fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
3203fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3204fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3205fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3206effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
3207fa22f6d0SBarry Smith 
3208fa22f6d0SBarry Smith     /* local sweep */
320941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
3210fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
3211f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
3212ffe4fb16SHong Zhang   PetscFunctionReturn(0);
3213ffe4fb16SHong Zhang }
3214ffe4fb16SHong Zhang 
321541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
3216ffe4fb16SHong Zhang {
3217ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
3218dfbe8321SBarry Smith   PetscErrorCode ierr;
32192798e883SHong Zhang   Vec            lvec1,bb1;
32202798e883SHong Zhang 
32212798e883SHong Zhang   PetscFunctionBegin;
3222e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3223e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
32242798e883SHong Zhang 
3225c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
32262798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
322741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
32282798e883SHong Zhang       its--;
32292798e883SHong Zhang     }
32302798e883SHong Zhang 
32312798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
32322798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
32332798e883SHong Zhang     while (its--) {
3234ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32352798e883SHong Zhang 
32362798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
32372798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3238efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
32392798e883SHong Zhang 
3240ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32412798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3242ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32432798e883SHong Zhang 
32442798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3245efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
32462798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
32472798e883SHong Zhang 
3248ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32492798e883SHong Zhang 
3250c14dc6b6SHong Zhang       /* diagonal sweep */
325141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
32522798e883SHong Zhang     }
32536bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
32546bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
32556bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
32562798e883SHong Zhang   PetscFunctionReturn(0);
32572798e883SHong Zhang }
32582798e883SHong Zhang 
3259dfb205c3SBarry Smith /*@
3260dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3261dfb205c3SBarry Smith          CSR format the local rows.
3262dfb205c3SBarry Smith 
3263d083f849SBarry Smith    Collective
3264dfb205c3SBarry Smith 
3265dfb205c3SBarry Smith    Input Parameters:
3266dfb205c3SBarry Smith +  comm - MPI communicator
3267dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3268dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3269dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3270dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3271dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3272dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3273dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3274483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
3275dfb205c3SBarry Smith .   j - column indices
3276dfb205c3SBarry Smith -   a - matrix values
3277dfb205c3SBarry Smith 
3278dfb205c3SBarry Smith    Output Parameter:
3279dfb205c3SBarry Smith .   mat - the matrix
3280dfb205c3SBarry Smith 
3281dfb205c3SBarry Smith    Level: intermediate
3282dfb205c3SBarry Smith 
3283dfb205c3SBarry Smith    Notes:
3284dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3285dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3286dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3287dfb205c3SBarry Smith 
3288dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3289dfb205c3SBarry Smith 
3290dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
329169b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3292dfb205c3SBarry Smith @*/
32937087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3294dfb205c3SBarry Smith {
3295dfb205c3SBarry Smith   PetscErrorCode ierr;
3296dfb205c3SBarry Smith 
3297dfb205c3SBarry Smith 
3298dfb205c3SBarry Smith   PetscFunctionBegin;
3299f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3300dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3301dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3302dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3303dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3304dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3305dfb205c3SBarry Smith   PetscFunctionReturn(0);
3306dfb205c3SBarry Smith }
3307dfb205c3SBarry Smith 
3308dfb205c3SBarry Smith 
3309dfb205c3SBarry Smith /*@C
3310664954b6SBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values
3311dfb205c3SBarry Smith 
3312d083f849SBarry Smith    Collective
3313dfb205c3SBarry Smith 
3314dfb205c3SBarry Smith    Input Parameters:
33151c4f3114SJed Brown +  B - the matrix
3316dfb205c3SBarry Smith .  bs - the block size
3317dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3318dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3319dfb205c3SBarry Smith -  v - optional values in the matrix
3320dfb205c3SBarry Smith 
3321664954b6SBarry Smith    Level: advanced
3322664954b6SBarry Smith 
3323664954b6SBarry Smith    Notes:
33240cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
33250cd7f59aSBarry Smith    and usually the numerical values as well
33260cd7f59aSBarry Smith 
332750c5228eSBarry Smith    Any entries below the diagonal are ignored
3328dfb205c3SBarry Smith 
332969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3330dfb205c3SBarry Smith @*/
33317087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3332dfb205c3SBarry Smith {
33334ac538c5SBarry Smith   PetscErrorCode ierr;
3334dfb205c3SBarry Smith 
3335dfb205c3SBarry Smith   PetscFunctionBegin;
33364ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3337dfb205c3SBarry Smith   PetscFunctionReturn(0);
3338dfb205c3SBarry Smith }
3339dfb205c3SBarry Smith 
334010c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
33414dcd73b1SHong Zhang {
33424dcd73b1SHong Zhang   PetscErrorCode ierr;
334310c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
334410c56fdeSHong Zhang   PetscInt       *indx;
334510c56fdeSHong Zhang   PetscScalar    *values;
3346dfb205c3SBarry Smith 
33474dcd73b1SHong Zhang   PetscFunctionBegin;
33484dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
334910c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
335010c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
3351de25e9cbSPierre Jolivet     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
335210c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
3353de25e9cbSPierre Jolivet     PetscMPIInt    rank,size;
33544dcd73b1SHong Zhang 
335510c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
335610c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
335710c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
3358da91a574SPierre Jolivet       ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N);
335910c56fdeSHong Zhang     }
3360da91a574SPierre Jolivet     nbs = n/cbs;
33614dcd73b1SHong Zhang 
33624dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
3363de25e9cbSPierre Jolivet     ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */
3364de25e9cbSPierre Jolivet 
3365de25e9cbSPierre Jolivet     ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
3366de25e9cbSPierre Jolivet     ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr);
3367de25e9cbSPierre Jolivet     if (rank == size-1) {
3368de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
3369de25e9cbSPierre Jolivet       if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs);
3370de25e9cbSPierre Jolivet     }
3371de25e9cbSPierre Jolivet 
3372de25e9cbSPierre Jolivet     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */
3373e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
337410c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
33754dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
33764dcd73b1SHong Zhang       nnz  = nnz/bs;
33774dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
33784dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
33794dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
33804dcd73b1SHong Zhang     }
3381e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
33824dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
33834dcd73b1SHong Zhang 
33844dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
3385de25e9cbSPierre Jolivet     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
33864dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
3387ce94fc41SPierre Jolivet     ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr);
3388ce94fc41SPierre Jolivet     ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr);
33894dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
33904dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
33914dcd73b1SHong Zhang   }
33924dcd73b1SHong Zhang 
339310c56fdeSHong Zhang   /* numeric phase */
33944dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
339510c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
33964dcd73b1SHong Zhang 
3397e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
33984dcd73b1SHong Zhang   for (i=0; i<m; i++) {
33994dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
34004dcd73b1SHong Zhang     Ii   = i + rstart;
340110c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
34024dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
34034dcd73b1SHong Zhang   }
3404e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
340510c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
340610c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
34074dcd73b1SHong Zhang   PetscFunctionReturn(0);
34084dcd73b1SHong Zhang }
3409