xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 290bbb0a1dcfb34dbf94efcfcc44171581b0efea)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
101085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
103a30f8f8cSSatish Balay       N = nrow++ - 1;  \
104a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
105a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
106a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
107a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
108a30f8f8cSSatish Balay       } \
109a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
110a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
111a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
112a30f8f8cSSatish Balay       a_noinsert:; \
113a30f8f8cSSatish Balay     ailen[brow] = nrow; \
114a30f8f8cSSatish Balay }
115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
116a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
117a30f8f8cSSatish Balay { \
118a30f8f8cSSatish Balay     brow = row/bs;  \
119a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
120a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
121a30f8f8cSSatish Balay       bcol = col/bs; \
122a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
123a30f8f8cSSatish Balay       low = 0; high = nrow; \
124a30f8f8cSSatish Balay       while (high-low > 3) { \
125a30f8f8cSSatish Balay         t = (low+high)/2; \
126a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
127a30f8f8cSSatish Balay         else              low  = t; \
128a30f8f8cSSatish Balay       } \
129a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
130a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
131a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
132a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
133a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
134a30f8f8cSSatish Balay           else                    *bap  = value;  \
135a30f8f8cSSatish Balay           goto b_noinsert; \
136a30f8f8cSSatish Balay         } \
137a30f8f8cSSatish Balay       } \
138a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
139085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
140421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       b_noinsert:; \
151a30f8f8cSSatish Balay     bilen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #endif
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1564a2ae208SSatish Balay #undef __FUNCT__
1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
159a30f8f8cSSatish Balay {
160a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
161dfbe8321SBarry Smith   PetscErrorCode ierr;
1621302d50aSBarry Smith   PetscInt       i,N = m*n;
163a30f8f8cSSatish Balay   MatScalar      *vsingle;
164a30f8f8cSSatish Balay 
165a30f8f8cSSatish Balay   PetscFunctionBegin;
166a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
16705b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
16882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
169a30f8f8cSSatish Balay     b->setvalueslen  = N;
170a30f8f8cSSatish Balay   }
171a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
172a30f8f8cSSatish Balay 
173a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
174a30f8f8cSSatish Balay     vsingle[i] = v[i];
175a30f8f8cSSatish Balay   }
176a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
177a30f8f8cSSatish Balay   PetscFunctionReturn(0);
178a30f8f8cSSatish Balay }
179a30f8f8cSSatish Balay 
1804a2ae208SSatish Balay #undef __FUNCT__
1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
183a30f8f8cSSatish Balay {
184a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
185dfbe8321SBarry Smith   PetscErrorCode ierr;
1861302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
187a30f8f8cSSatish Balay   MatScalar      *vsingle;
188a30f8f8cSSatish Balay 
189a30f8f8cSSatish Balay   PetscFunctionBegin;
190a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
19105b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
19282502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
193a30f8f8cSSatish Balay     b->setvalueslen  = N;
194a30f8f8cSSatish Balay   }
195a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
196a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
197a30f8f8cSSatish Balay     vsingle[i] = v[i];
198a30f8f8cSSatish Balay   }
199a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
200a30f8f8cSSatish Balay   PetscFunctionReturn(0);
201a30f8f8cSSatish Balay }
202a30f8f8cSSatish Balay #endif
203a30f8f8cSSatish Balay 
204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
205a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
206a30f8f8cSSatish Balay */
2074a2ae208SSatish Balay #undef __FUNCT__
208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar"
2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
210a30f8f8cSSatish Balay {
211a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
212a30f8f8cSSatish Balay   MatScalar      value;
213b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
214dfbe8321SBarry Smith   PetscErrorCode ierr;
2151302d50aSBarry Smith   PetscInt       i,j,row,col;
216899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
217899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
218899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
219a30f8f8cSSatish Balay 
220a30f8f8cSSatish Balay   /* Some Variables required in the macro */
221a30f8f8cSSatish Balay   Mat            A = baij->A;
222a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2231302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
224a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
225a30f8f8cSSatish Balay 
226a30f8f8cSSatish Balay   Mat            B = baij->B;
227a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2281302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
229a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
230a30f8f8cSSatish Balay 
2311302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2321302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
233a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
234a30f8f8cSSatish Balay 
235a30f8f8cSSatish Balay   /* for stash */
236910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
237910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
238a30f8f8cSSatish Balay 
239a30f8f8cSSatish Balay   PetscFunctionBegin;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   if (!baij->donotstash){
24259ffdab8SBarry Smith     if (n > baij->n_loc) {
24359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
24459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
24559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
24659ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
24759ffdab8SBarry Smith       baij->n_loc = n;
24859ffdab8SBarry Smith     }
24959ffdab8SBarry Smith     in_loc = baij->in_loc;
25059ffdab8SBarry Smith     v_loc  = baij->v_loc;
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
254a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
256899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
257a30f8f8cSSatish Balay #endif
258a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
259a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
260a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
26101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
26201b2bd88SHong Zhang           if (a->ignore_ltriangular){
26301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
26401b2bd88SHong Zhang           } else {
26501b2bd88SHong Zhang             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)");
26601b2bd88SHong Zhang           }
26701b2bd88SHong Zhang         }
268a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
269a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
270a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
271a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
272a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
273a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
274a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
275a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
277899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
278a30f8f8cSSatish Balay #endif
279a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
280a30f8f8cSSatish Balay           if (mat->was_assembled) {
281a30f8f8cSSatish Balay             if (!baij->colmap) {
282653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
283a30f8f8cSSatish Balay             }
284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
285a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28671730473SSatish Balay             col  = col - 1;
287a30f8f8cSSatish Balay #else
28871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
289a30f8f8cSSatish Balay #endif
290a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
291a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
292a30f8f8cSSatish Balay               col =  in[j];
293a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
294a30f8f8cSSatish Balay               B = baij->B;
295a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
296a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
297a30f8f8cSSatish Balay               ba=b->a;
29871730473SSatish Balay             } else col += in[j]%bs;
299a30f8f8cSSatish Balay           } else col = in[j];
300a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
301a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
302a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
303a30f8f8cSSatish Balay         }
304a30f8f8cSSatish Balay       }
305a30f8f8cSSatish Balay     } else {  /* off processor entry */
306a30f8f8cSSatish Balay       if (!baij->donotstash) {
307a30f8f8cSSatish Balay         n_loc = 0;
308a30f8f8cSSatish Balay         for (j=0; j<n; j++){
309f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
310a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
311a30f8f8cSSatish Balay           if (roworiented) {
312a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
313a30f8f8cSSatish Balay           } else {
314a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
315a30f8f8cSSatish Balay           }
316a30f8f8cSSatish Balay           n_loc++;
317a30f8f8cSSatish Balay         }
318a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
319a30f8f8cSSatish Balay       }
320a30f8f8cSSatish Balay     }
321a30f8f8cSSatish Balay   }
322a30f8f8cSSatish Balay   PetscFunctionReturn(0);
323a30f8f8cSSatish Balay }
324a30f8f8cSSatish Balay 
3254a2ae208SSatish Balay #undef __FUNCT__
326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
328a30f8f8cSSatish Balay {
3290880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
330f15d580aSBarry Smith   const MatScalar *value;
331f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3320880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
333dfbe8321SBarry Smith   PetscErrorCode  ierr;
334899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
335899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
336899cda47SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2;
3370880e062SHong Zhang 
338a30f8f8cSSatish Balay   PetscFunctionBegin;
3390880e062SHong Zhang   if(!barray) {
3400880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3410880e062SHong Zhang     baij->barray = barray;
3420880e062SHong Zhang   }
3430880e062SHong Zhang 
3440880e062SHong Zhang   if (roworiented) {
3450880e062SHong Zhang     stepval = (n-1)*bs;
3460880e062SHong Zhang   } else {
3470880e062SHong Zhang     stepval = (m-1)*bs;
3480880e062SHong Zhang   }
3490880e062SHong Zhang   for (i=0; i<m; i++) {
3500880e062SHong Zhang     if (im[i] < 0) continue;
3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
35277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3530880e062SHong Zhang #endif
3540880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3550880e062SHong Zhang       row = im[i] - rstart;
3560880e062SHong Zhang       for (j=0; j<n; j++) {
3570880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3580880e062SHong Zhang         if ((roworiented) && (n == 1)) {
359f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3600880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
361f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3620880e062SHong Zhang         } else { /* Here a copy is required */
3630880e062SHong Zhang           if (roworiented) {
3640880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3650880e062SHong Zhang           } else {
3660880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3670880e062SHong Zhang           }
3680880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3690880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3700880e062SHong Zhang               *barray++  = *value++;
3710880e062SHong Zhang             }
3720880e062SHong Zhang           }
3730880e062SHong Zhang           barray -=bs2;
3740880e062SHong Zhang         }
3750880e062SHong Zhang 
3760880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3770880e062SHong Zhang           col  = in[j] - cstart;
3780880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3790880e062SHong Zhang         }
3800880e062SHong Zhang         else if (in[j] < 0) continue;
3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
38277431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3830880e062SHong Zhang #endif
3840880e062SHong Zhang         else {
3850880e062SHong Zhang           if (mat->was_assembled) {
3860880e062SHong Zhang             if (!baij->colmap) {
387653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3880880e062SHong Zhang             }
3890880e062SHong Zhang 
3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3921302d50aSBarry Smith             { PetscInt data;
3930880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3940880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3950880e062SHong Zhang             }
3960880e062SHong Zhang #else
3970880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3980880e062SHong Zhang #endif
3990880e062SHong Zhang #endif
4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4010880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4020880e062SHong Zhang             col  = (col - 1)/bs;
4030880e062SHong Zhang #else
4040880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4050880e062SHong Zhang #endif
4060880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4070880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4080880e062SHong Zhang               col =  in[j];
4090880e062SHong Zhang             }
4100880e062SHong Zhang           }
4110880e062SHong Zhang           else col = in[j];
412e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4130880e062SHong Zhang         }
4140880e062SHong Zhang       }
4150880e062SHong Zhang     } else {
4160880e062SHong Zhang       if (!baij->donotstash) {
4170880e062SHong Zhang         if (roworiented) {
4180880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4190880e062SHong Zhang         } else {
4200880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4210880e062SHong Zhang         }
4220880e062SHong Zhang       }
4230880e062SHong Zhang     }
4240880e062SHong Zhang   }
4250880e062SHong Zhang   PetscFunctionReturn(0);
426a30f8f8cSSatish Balay }
427a30f8f8cSSatish Balay 
4284a2ae208SSatish Balay #undef __FUNCT__
4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
431a30f8f8cSSatish Balay {
432f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4336849ba73SBarry Smith   PetscErrorCode ierr;
434899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
435899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
436a30f8f8cSSatish Balay 
437a30f8f8cSSatish Balay   PetscFunctionBegin;
438a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
43977431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
440899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
441a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
442a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
443a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
44477431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
445899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
446a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
447a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
448c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
449a30f8f8cSSatish Balay         } else {
450a30f8f8cSSatish Balay           if (!baij->colmap) {
451653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
452a30f8f8cSSatish Balay           }
453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
454a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
455a30f8f8cSSatish Balay           data --;
456a30f8f8cSSatish Balay #else
457a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
458a30f8f8cSSatish Balay #endif
459a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
460a30f8f8cSSatish Balay           else {
461a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
462e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
463a30f8f8cSSatish Balay           }
464a30f8f8cSSatish Balay         }
465a30f8f8cSSatish Balay       }
466a30f8f8cSSatish Balay     } else {
46729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
468a30f8f8cSSatish Balay     }
469a30f8f8cSSatish Balay   }
470a30f8f8cSSatish Balay  PetscFunctionReturn(0);
471a30f8f8cSSatish Balay }
472a30f8f8cSSatish Balay 
4734a2ae208SSatish Balay #undef __FUNCT__
4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
476a30f8f8cSSatish Balay {
477a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
478dfbe8321SBarry Smith   PetscErrorCode ierr;
479a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
480a30f8f8cSSatish Balay 
481a30f8f8cSSatish Balay   PetscFunctionBegin;
482a30f8f8cSSatish Balay   if (baij->size == 1) {
483a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
484a30f8f8cSSatish Balay   } else {
485a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
486f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
487a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
488a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
489a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
490a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
491d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
492a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
493a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4940b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4950b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4960b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4970b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
498899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
499899cda47SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs;
5000b8dc8d2SHong Zhang       MatScalar    *v;
5010b8dc8d2SHong Zhang 
502899cda47SBarry Smith       ierr  = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
503899cda47SBarry Smith       rsum2 = rsum + mat->cmap.N;
504899cda47SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
5050b8dc8d2SHong Zhang       /* Amat */
5060b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5070b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5080b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5090b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5100b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5110b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5120b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5130b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5140b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5150b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5160b8dc8d2SHong Zhang               /* non-diagonal block */
5170b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5180b8dc8d2SHong Zhang             }
5190b8dc8d2SHong Zhang           }
5200b8dc8d2SHong Zhang         }
5210b8dc8d2SHong Zhang       }
5220b8dc8d2SHong Zhang       /* Bmat */
5230b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5240b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5250b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5260b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5270b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5280b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5290b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5300b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5310b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5320b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5330b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5340b8dc8d2SHong Zhang             }
5350b8dc8d2SHong Zhang           }
5360b8dc8d2SHong Zhang         }
5370b8dc8d2SHong Zhang       }
538899cda47SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5390b8dc8d2SHong Zhang       *norm = 0.0;
540899cda47SBarry Smith       for (col=0; col<mat->cmap.N; col++) {
5410b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5420b8dc8d2SHong Zhang       }
5430b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     } else {
54529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
546a30f8f8cSSatish Balay     }
547a30f8f8cSSatish Balay   }
548a30f8f8cSSatish Balay   PetscFunctionReturn(0);
549a30f8f8cSSatish Balay }
550a30f8f8cSSatish Balay 
5514a2ae208SSatish Balay #undef __FUNCT__
5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
554a30f8f8cSSatish Balay {
555a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
556dfbe8321SBarry Smith   PetscErrorCode ierr;
5571302d50aSBarry Smith   PetscInt       nstash,reallocs;
558a30f8f8cSSatish Balay   InsertMode     addv;
559a30f8f8cSSatish Balay 
560a30f8f8cSSatish Balay   PetscFunctionBegin;
561a30f8f8cSSatish Balay   if (baij->donotstash) {
562a30f8f8cSSatish Balay     PetscFunctionReturn(0);
563a30f8f8cSSatish Balay   }
564a30f8f8cSSatish Balay 
565a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
566a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
569a30f8f8cSSatish Balay   }
570a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
571a30f8f8cSSatish Balay 
572899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
573899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
575ae15b995SBarry Smith   ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
576a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
577ae15b995SBarry Smith   ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
578a30f8f8cSSatish Balay   PetscFunctionReturn(0);
579a30f8f8cSSatish Balay }
580a30f8f8cSSatish Balay 
5814a2ae208SSatish Balay #undef __FUNCT__
5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
584a30f8f8cSSatish Balay {
585a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
586a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5876849ba73SBarry Smith   PetscErrorCode ierr;
58813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5891302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
59013f74950SBarry Smith   PetscMPIInt    n;
591a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
592a30f8f8cSSatish Balay   MatScalar      *val;
593a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
594a30f8f8cSSatish Balay 
59591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
596a30f8f8cSSatish Balay   PetscFunctionBegin;
597a30f8f8cSSatish Balay 
598a30f8f8cSSatish Balay   if (!baij->donotstash) {
599a30f8f8cSSatish Balay     while (1) {
600a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
601a30f8f8cSSatish Balay       if (!flg) break;
602a30f8f8cSSatish Balay 
603a30f8f8cSSatish Balay       for (i=0; i<n;) {
604a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
605a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
606a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
607a30f8f8cSSatish Balay         else       ncols = n-i;
608a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
609a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
610a30f8f8cSSatish Balay         i = j;
611a30f8f8cSSatish Balay       }
612a30f8f8cSSatish Balay     }
613a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
614a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
615a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
616a30f8f8cSSatish Balay        restore the original flags */
617a30f8f8cSSatish Balay     r1 = baij->roworiented;
618a30f8f8cSSatish Balay     r2 = a->roworiented;
61991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
620a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
621a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
62291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
623a30f8f8cSSatish Balay     while (1) {
624a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       if (!flg) break;
626a30f8f8cSSatish Balay 
627a30f8f8cSSatish Balay       for (i=0; i<n;) {
628a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
629a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
630a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
631a30f8f8cSSatish Balay         else       ncols = n-i;
632a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
633a30f8f8cSSatish Balay         i = j;
634a30f8f8cSSatish Balay       }
635a30f8f8cSSatish Balay     }
636a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
637a30f8f8cSSatish Balay     baij->roworiented = r1;
638a30f8f8cSSatish Balay     a->roworiented    = r2;
63991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
643a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
644a30f8f8cSSatish Balay 
645a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
646a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
647a30f8f8cSSatish Balay   /*
648a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
649a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
650a30f8f8cSSatish Balay   */
651a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
652a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
653a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
654c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
655a30f8f8cSSatish Balay     }
656a30f8f8cSSatish Balay   }
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
65940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
660a30f8f8cSSatish Balay   }
66191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
662a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
663a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
664a30f8f8cSSatish Balay 
665a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
666a30f8f8cSSatish Balay   baij->rowvalues = 0;
6675222a1afSHong Zhang 
668a30f8f8cSSatish Balay   PetscFunctionReturn(0);
669a30f8f8cSSatish Balay }
670a30f8f8cSSatish Balay 
671799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
6724a2ae208SSatish Balay #undef __FUNCT__
6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
675a30f8f8cSSatish Balay {
676a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
677dfbe8321SBarry Smith   PetscErrorCode    ierr;
678899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
6791302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
68032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
681b0a32e0cSBarry Smith   PetscViewer       sviewer;
682f3ef73ceSBarry Smith   PetscViewerFormat format;
683a30f8f8cSSatish Balay 
684a30f8f8cSSatish Balay   PetscFunctionBegin;
68532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
686fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68732077d6dSBarry Smith   if (iascii) {
688b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
689456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
690a30f8f8cSSatish Balay       MatInfo info;
691a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
692a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
69377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
694899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
695899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
696a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
698a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
700b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
701a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
702a30f8f8cSSatish Balay       PetscFunctionReturn(0);
703fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
70477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
705a30f8f8cSSatish Balay       PetscFunctionReturn(0);
706c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
707c1490034SHong Zhang       PetscFunctionReturn(0);
708a30f8f8cSSatish Balay     }
709a30f8f8cSSatish Balay   }
710a30f8f8cSSatish Balay 
711a30f8f8cSSatish Balay   if (isdraw) {
712b0a32e0cSBarry Smith     PetscDraw  draw;
713a30f8f8cSSatish Balay     PetscTruth isnull;
714b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
715b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay 
718a30f8f8cSSatish Balay   if (size == 1) {
719e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
721a30f8f8cSSatish Balay   } else {
722a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
723a30f8f8cSSatish Balay     Mat          A;
72465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
72565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
726899cda47SBarry Smith     PetscInt     M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
727a30f8f8cSSatish Balay     MatScalar    *a;
728a30f8f8cSSatish Balay 
729f204ca49SKris Buschelman     /* Should this be the same type as mat? */
730f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
731a30f8f8cSSatish Balay     if (!rank) {
732f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
733a30f8f8cSSatish Balay     } else {
734f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
735a30f8f8cSSatish Balay     }
736f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
737899cda47SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
73852e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
739a30f8f8cSSatish Balay 
740a30f8f8cSSatish Balay     /* copy over the A part */
74165d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
742a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7431302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
744a30f8f8cSSatish Balay 
745a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
746e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
747a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
748a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
749e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
750a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
751a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
752a30f8f8cSSatish Balay           col++; a += bs;
753a30f8f8cSSatish Balay         }
754a30f8f8cSSatish Balay       }
755a30f8f8cSSatish Balay     }
756a30f8f8cSSatish Balay     /* copy over the B part */
75765d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
75865d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
759a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
760e9f7bc9eSHong Zhang 
761e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
762a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
763a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
764a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
765a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
766799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
767a30f8f8cSSatish Balay           col++; a += bs;
768a30f8f8cSSatish Balay         }
769a30f8f8cSSatish Balay       }
770a30f8f8cSSatish Balay     }
771a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
772a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
773a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
774a30f8f8cSSatish Balay     /*
775a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
776b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
777a30f8f8cSSatish Balay     */
778b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
77965d70643SHong Zhang     if (!rank) {
780e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
781a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
782a30f8f8cSSatish Balay     }
783b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
784a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
785a30f8f8cSSatish Balay   }
786a30f8f8cSSatish Balay   PetscFunctionReturn(0);
787a30f8f8cSSatish Balay }
788a30f8f8cSSatish Balay 
7894a2ae208SSatish Balay #undef __FUNCT__
7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
791dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
792a30f8f8cSSatish Balay {
793dfbe8321SBarry Smith   PetscErrorCode ierr;
79432077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
795a30f8f8cSSatish Balay 
796a30f8f8cSSatish Balay   PetscFunctionBegin;
79732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
798fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
799b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
800fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
80132077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
802a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
803a30f8f8cSSatish Balay   } else {
8041302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
805a30f8f8cSSatish Balay   }
806a30f8f8cSSatish Balay   PetscFunctionReturn(0);
807a30f8f8cSSatish Balay }
808a30f8f8cSSatish Balay 
8094a2ae208SSatish Balay #undef __FUNCT__
8104a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
811dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
812a30f8f8cSSatish Balay {
813a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
814dfbe8321SBarry Smith   PetscErrorCode ierr;
815a30f8f8cSSatish Balay 
816a30f8f8cSSatish Balay   PetscFunctionBegin;
817a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
818899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
819a30f8f8cSSatish Balay #endif
820a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
821a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
822a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
823a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
824a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
825a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
826a30f8f8cSSatish Balay #else
82705b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
828a30f8f8cSSatish Balay #endif
82905b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
830a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
831a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
83240781036SHong Zhang   if (baij->slvec0) {
83340781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
83440781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
83540781036SHong Zhang   }
83640781036SHong Zhang   if (baij->slvec1) {
83740781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
83840781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
83940781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
84040781036SHong Zhang   }
84140781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
84205b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
84305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
84405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
845a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
84605b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
847a30f8f8cSSatish Balay #endif
84859ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
84959ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
850899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
851a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
852901853e0SKris Buschelman 
853901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
854901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
855901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
856901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
857a30f8f8cSSatish Balay   PetscFunctionReturn(0);
858a30f8f8cSSatish Balay }
859a30f8f8cSSatish Balay 
8604a2ae208SSatish Balay #undef __FUNCT__
861a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
862dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
863a9d4b620SHong Zhang {
864a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
865dfbe8321SBarry Smith   PetscErrorCode ierr;
866899cda47SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap.bs;
867a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
868a9d4b620SHong Zhang 
869a9d4b620SHong Zhang   PetscFunctionBegin;
870a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
871899cda47SBarry Smith   if (nt != A->cmap.n) {
872a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
873a9d4b620SHong Zhang   }
874a9d4b620SHong Zhang 
875a9d4b620SHong Zhang   /* diagonal part */
876a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8772dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
878a9d4b620SHong Zhang 
879a9d4b620SHong Zhang   /* subdiagonal part */
880a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
881899cda47SBarry Smith   CHKMEMQ;
882a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8831ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8841ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
885899cda47SBarry Smith   CHKMEMQ;
886a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
887899cda47SBarry Smith   CHKMEMQ;
8881ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
889a9d4b620SHong Zhang 
890899cda47SBarry Smith   CHKMEMQ;
891a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
892899cda47SBarry Smith   CHKMEMQ;
8931ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
894899cda47SBarry Smith   CHKMEMQ;
895a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
896899cda47SBarry Smith     CHKMEMQ;
897a9d4b620SHong Zhang   /* supperdiagonal part */
898a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
899899cda47SBarry Smith     CHKMEMQ;
900a9d4b620SHong Zhang   PetscFunctionReturn(0);
901a9d4b620SHong Zhang }
902a9d4b620SHong Zhang 
903a9d4b620SHong Zhang #undef __FUNCT__
90440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
905dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
906a30f8f8cSSatish Balay {
907a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
908dfbe8321SBarry Smith   PetscErrorCode ierr;
9091302d50aSBarry Smith   PetscInt       nt;
910a30f8f8cSSatish Balay 
911a30f8f8cSSatish Balay   PetscFunctionBegin;
912a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
913899cda47SBarry Smith   if (nt != A->cmap.n) {
91429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
915a30f8f8cSSatish Balay   }
916a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
917899cda47SBarry Smith   if (nt != A->rmap.N) {
91829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
919a30f8f8cSSatish Balay   }
92065d70643SHong Zhang 
921b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
922b941877fSHong Zhang   /* do diagonal part */
923b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
924b941877fSHong Zhang   /* do supperdiagonal part */
925b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
926b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
927b941877fSHong Zhang   /* do subdiagonal part */
928b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
929b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
930b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
93165d70643SHong Zhang 
932a30f8f8cSSatish Balay   PetscFunctionReturn(0);
933a30f8f8cSSatish Balay }
934a30f8f8cSSatish Balay 
9354a2ae208SSatish Balay #undef __FUNCT__
9364a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
937dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
938a30f8f8cSSatish Balay {
939de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
940dfbe8321SBarry Smith   PetscErrorCode ierr;
941899cda47SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap.bs;
942a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
943a9d4b620SHong Zhang 
944a9d4b620SHong Zhang   PetscFunctionBegin;
945a9d4b620SHong Zhang   /*
94656faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
94756faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
948a9d4b620SHong Zhang   */
949a9d4b620SHong Zhang   /* diagonal part */
950a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9512dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
952a9d4b620SHong Zhang 
953a9d4b620SHong Zhang   /* subdiagonal part */
954a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
955a9d4b620SHong Zhang 
956a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9571ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9581ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
959a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9601ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
961a9d4b620SHong Zhang 
962a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9631ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
964a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
965a9d4b620SHong Zhang 
966a9d4b620SHong Zhang   /* supperdiagonal part */
967a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
968a9d4b620SHong Zhang 
969a9d4b620SHong Zhang   PetscFunctionReturn(0);
970a9d4b620SHong Zhang }
971a9d4b620SHong Zhang 
972a9d4b620SHong Zhang #undef __FUNCT__
973a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
974dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
975a9d4b620SHong Zhang {
976a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
977dfbe8321SBarry Smith   PetscErrorCode ierr;
978a30f8f8cSSatish Balay 
979a30f8f8cSSatish Balay   PetscFunctionBegin;
980b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
981b941877fSHong Zhang   /* do diagonal part */
982b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
983b941877fSHong Zhang   /* do supperdiagonal part */
984b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
985de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
986de8b6608SHong Zhang 
987b941877fSHong Zhang   /* do subdiagonal part */
988a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
989a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
990a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
991aa482183SHong Zhang 
992a30f8f8cSSatish Balay   PetscFunctionReturn(0);
993a30f8f8cSSatish Balay }
994a30f8f8cSSatish Balay 
995a30f8f8cSSatish Balay /*
996a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
997a30f8f8cSSatish Balay    diagonal block
998a30f8f8cSSatish Balay */
9994a2ae208SSatish Balay #undef __FUNCT__
10004a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1001dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1002a30f8f8cSSatish Balay {
1003a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1004dfbe8321SBarry Smith   PetscErrorCode ierr;
1005a30f8f8cSSatish Balay 
1006a30f8f8cSSatish Balay   PetscFunctionBegin;
1007899cda47SBarry Smith   /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1008a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1009a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1010a30f8f8cSSatish Balay }
1011a30f8f8cSSatish Balay 
10124a2ae208SSatish Balay #undef __FUNCT__
10134a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1014f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1015a30f8f8cSSatish Balay {
1016a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1017dfbe8321SBarry Smith   PetscErrorCode ierr;
1018a30f8f8cSSatish Balay 
1019a30f8f8cSSatish Balay   PetscFunctionBegin;
1020f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1021f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1022a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1023a30f8f8cSSatish Balay }
1024a30f8f8cSSatish Balay 
10254a2ae208SSatish Balay #undef __FUNCT__
10264a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10271302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1028a30f8f8cSSatish Balay {
1029d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1030d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1031d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1032899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1033899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1034899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1035d0d4cfc2SHong Zhang 
1036a30f8f8cSSatish Balay   PetscFunctionBegin;
1037d0d4cfc2SHong Zhang   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1038d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1039d0d4cfc2SHong Zhang 
1040d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1041d0d4cfc2SHong Zhang     /*
1042d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1043d0d4cfc2SHong Zhang     */
1044d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1045d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1046d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1047d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1048d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1049d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1050d0d4cfc2SHong Zhang     }
1051d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1052d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1053d0d4cfc2SHong Zhang   }
1054d0d4cfc2SHong Zhang 
1055d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1056d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1057d0d4cfc2SHong Zhang 
1058d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1059d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1060d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1061d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1062d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1063d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1064d0d4cfc2SHong Zhang 
1065d0d4cfc2SHong Zhang   cmap  = mat->garray;
1066d0d4cfc2SHong Zhang   if (v  || idx) {
1067d0d4cfc2SHong Zhang     if (nztot) {
1068d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1069d0d4cfc2SHong Zhang       PetscInt imark = -1;
1070d0d4cfc2SHong Zhang       if (v) {
1071d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1072d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1073d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1074d0d4cfc2SHong Zhang           else break;
1075d0d4cfc2SHong Zhang         }
1076d0d4cfc2SHong Zhang         imark = i;
1077d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1078d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1079d0d4cfc2SHong Zhang       }
1080d0d4cfc2SHong Zhang       if (idx) {
1081d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1082d0d4cfc2SHong Zhang         if (imark > -1) {
1083d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1084d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1085d0d4cfc2SHong Zhang           }
1086d0d4cfc2SHong Zhang         } else {
1087d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1088d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1089d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1090d0d4cfc2SHong Zhang             else break;
1091d0d4cfc2SHong Zhang           }
1092d0d4cfc2SHong Zhang           imark = i;
1093d0d4cfc2SHong Zhang         }
1094d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1095d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1096d0d4cfc2SHong Zhang       }
1097d0d4cfc2SHong Zhang     } else {
1098d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1099d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1100d0d4cfc2SHong Zhang     }
1101d0d4cfc2SHong Zhang   }
1102d0d4cfc2SHong Zhang   *nz = nztot;
1103d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1104d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1105a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1106a30f8f8cSSatish Balay }
1107a30f8f8cSSatish Balay 
11084a2ae208SSatish Balay #undef __FUNCT__
11094a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
11101302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1111a30f8f8cSSatish Balay {
1112a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1113a30f8f8cSSatish Balay 
1114a30f8f8cSSatish Balay   PetscFunctionBegin;
1115abc0a331SBarry Smith   if (!baij->getrowactive) {
1116abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1117a30f8f8cSSatish Balay   }
1118a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1119a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1120a30f8f8cSSatish Balay }
1121a30f8f8cSSatish Balay 
11224a2ae208SSatish Balay #undef __FUNCT__
1123d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1124d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1125d0d4cfc2SHong Zhang {
1126d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1127d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1128d0d4cfc2SHong Zhang 
1129d0d4cfc2SHong Zhang   PetscFunctionBegin;
1130d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1131d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1132d0d4cfc2SHong Zhang }
1133d0d4cfc2SHong Zhang #undef __FUNCT__
1134d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1135d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1136d0d4cfc2SHong Zhang {
1137d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1138d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1139d0d4cfc2SHong Zhang 
1140d0d4cfc2SHong Zhang   PetscFunctionBegin;
1141d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1142d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1143d0d4cfc2SHong Zhang }
1144d0d4cfc2SHong Zhang 
1145d0d4cfc2SHong Zhang #undef __FUNCT__
114699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
114799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
114899cafbc1SBarry Smith {
114999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
115099cafbc1SBarry Smith   PetscErrorCode ierr;
115199cafbc1SBarry Smith 
115299cafbc1SBarry Smith   PetscFunctionBegin;
115399cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
115499cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
115599cafbc1SBarry Smith   PetscFunctionReturn(0);
115699cafbc1SBarry Smith }
115799cafbc1SBarry Smith 
115899cafbc1SBarry Smith #undef __FUNCT__
115999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
116099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
116199cafbc1SBarry Smith {
116299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
116399cafbc1SBarry Smith   PetscErrorCode ierr;
116499cafbc1SBarry Smith 
116599cafbc1SBarry Smith   PetscFunctionBegin;
116699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
116799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
116899cafbc1SBarry Smith   PetscFunctionReturn(0);
116999cafbc1SBarry Smith }
117099cafbc1SBarry Smith 
117199cafbc1SBarry Smith #undef __FUNCT__
11724a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1173dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1174a30f8f8cSSatish Balay {
1175a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1176dfbe8321SBarry Smith   PetscErrorCode ierr;
1177a30f8f8cSSatish Balay 
1178a30f8f8cSSatish Balay   PetscFunctionBegin;
1179a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1180a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1181a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1182a30f8f8cSSatish Balay }
1183a30f8f8cSSatish Balay 
11844a2ae208SSatish Balay #undef __FUNCT__
11854a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1186dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1187a30f8f8cSSatish Balay {
1188a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1189a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1190dfbe8321SBarry Smith   PetscErrorCode ierr;
1191a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1192a30f8f8cSSatish Balay 
1193a30f8f8cSSatish Balay   PetscFunctionBegin;
1194899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
1195a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1196a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1197a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1198a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1199a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1200a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1201a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1202a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1203a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1204a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1205a30f8f8cSSatish Balay     info->memory       = isend[3];
1206a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1207a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1208d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1209a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1210a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1211a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1212a30f8f8cSSatish Balay     info->memory       = irecv[3];
1213a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1214a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1215d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1216a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1217a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1218a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1219a30f8f8cSSatish Balay     info->memory       = irecv[3];
1220a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1221a30f8f8cSSatish Balay   } else {
122277431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1223a30f8f8cSSatish Balay   }
1224899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1225899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1226899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1227899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
1228a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1229a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1230a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1231a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1232a30f8f8cSSatish Balay }
1233a30f8f8cSSatish Balay 
12344a2ae208SSatish Balay #undef __FUNCT__
12354a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1236dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1237a30f8f8cSSatish Balay {
1238a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1239d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1240dfbe8321SBarry Smith   PetscErrorCode ierr;
1241a30f8f8cSSatish Balay 
1242a30f8f8cSSatish Balay   PetscFunctionBegin;
1243e98b92d7SKris Buschelman   switch (op) {
1244e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1245e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1246e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1247e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1248e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1249e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1250e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1251a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1252a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1253e98b92d7SKris Buschelman     break;
1254e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1255a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1256a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1257a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1258e98b92d7SKris Buschelman     break;
1259e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1260e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1261e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1262*290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1263e98b92d7SKris Buschelman     break;
1264e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1265a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1266a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1267a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1268e98b92d7SKris Buschelman     break;
1269e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1270a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1271e98b92d7SKris Buschelman     break;
1272e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
127329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1274e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1275a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1276e98b92d7SKris Buschelman     break;
12779a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
12789a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
12799a4540c5SBarry Smith   case MAT_HERMITIAN:
12809a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
128177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
128277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12839a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
12849a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12859a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
1286*290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
128777e54ba9SKris Buschelman     break;
1288d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
1289d0d4cfc2SHong Zhang     aA->ignore_ltriangular = PETSC_TRUE;
1290d0d4cfc2SHong Zhang     break;
1291d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
1292d0d4cfc2SHong Zhang     aA->ignore_ltriangular = PETSC_FALSE;
1293d0d4cfc2SHong Zhang     break;
1294d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
1295d0d4cfc2SHong Zhang     aA->getrow_utriangular = PETSC_TRUE;
1296d0d4cfc2SHong Zhang     break;
1297e98b92d7SKris Buschelman   default:
1298ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1299a30f8f8cSSatish Balay   }
1300a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1301a30f8f8cSSatish Balay }
1302a30f8f8cSSatish Balay 
13034a2ae208SSatish Balay #undef __FUNCT__
13048115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1305dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1306a30f8f8cSSatish Balay {
1307dfbe8321SBarry Smith   PetscErrorCode ierr;
1308a30f8f8cSSatish Balay   PetscFunctionBegin;
1309999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13108115998fSBarry Smith   PetscFunctionReturn(0);
1311a30f8f8cSSatish Balay }
1312a30f8f8cSSatish Balay 
13134a2ae208SSatish Balay #undef __FUNCT__
13144a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1315dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1316a30f8f8cSSatish Balay {
1317a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1318a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1319dfbe8321SBarry Smith   PetscErrorCode ierr;
13205e90f9d9SHong Zhang   PetscInt       nv,m,n;
1321b3bf805bSHong Zhang   PetscTruth     flg;
1322a30f8f8cSSatish Balay 
1323a30f8f8cSSatish Balay   PetscFunctionBegin;
1324a30f8f8cSSatish Balay   if (ll != rr){
1325b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1326b3bf805bSHong Zhang     if (!flg)
132729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1328a30f8f8cSSatish Balay   }
1329b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1330b3bf805bSHong Zhang 
13315e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
13325e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1333b3bf805bSHong Zhang 
13345e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
13355e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13365e90f9d9SHong Zhang 
1337a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
13385e90f9d9SHong Zhang 
13395e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1340a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13415e90f9d9SHong Zhang 
13425e90f9d9SHong Zhang   /* scale the diagonal part */
1343a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1344a30f8f8cSSatish Balay 
13455e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1346a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1347a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1348a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1349a30f8f8cSSatish Balay }
1350a30f8f8cSSatish Balay 
13514a2ae208SSatish Balay #undef __FUNCT__
13524a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1353dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1354a30f8f8cSSatish Balay {
1355f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1356dfbe8321SBarry Smith   PetscErrorCode ierr;
1357a30f8f8cSSatish Balay 
1358a30f8f8cSSatish Balay   PetscFunctionBegin;
1359a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1360a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1361a30f8f8cSSatish Balay }
1362a30f8f8cSSatish Balay 
13636849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1364a30f8f8cSSatish Balay 
13654a2ae208SSatish Balay #undef __FUNCT__
13664a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1367dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1368a30f8f8cSSatish Balay {
1369a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1370a30f8f8cSSatish Balay   Mat            a,b,c,d;
1371a30f8f8cSSatish Balay   PetscTruth     flg;
1372dfbe8321SBarry Smith   PetscErrorCode ierr;
1373a30f8f8cSSatish Balay 
1374a30f8f8cSSatish Balay   PetscFunctionBegin;
1375a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1376a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1377a30f8f8cSSatish Balay 
1378a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1379abc0a331SBarry Smith   if (flg) {
1380a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1381a30f8f8cSSatish Balay   }
1382a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1383a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1384a30f8f8cSSatish Balay }
1385a30f8f8cSSatish Balay 
13864a2ae208SSatish Balay #undef __FUNCT__
13873c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13883c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13893c896bc6SHong Zhang {
13903c896bc6SHong Zhang   PetscErrorCode ierr;
13913c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13923c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13933c896bc6SHong Zhang 
13943c896bc6SHong Zhang   PetscFunctionBegin;
13953c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13963c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1397d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13983c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1399d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
14003c896bc6SHong Zhang   } else {
14013c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
14023c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
14033c896bc6SHong Zhang   }
14043c896bc6SHong Zhang   PetscFunctionReturn(0);
14053c896bc6SHong Zhang }
14063c896bc6SHong Zhang 
14073c896bc6SHong Zhang #undef __FUNCT__
14084a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1409dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1410273d9f13SBarry Smith {
1411dfbe8321SBarry Smith   PetscErrorCode ierr;
1412273d9f13SBarry Smith 
1413273d9f13SBarry Smith   PetscFunctionBegin;
14147edd0491SSatish Balay   ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1415273d9f13SBarry Smith   PetscFunctionReturn(0);
1416273d9f13SBarry Smith }
1417a5e6ed63SBarry Smith 
14184fe895cdSHong Zhang #include "petscblaslapack.h"
14194fe895cdSHong Zhang #undef __FUNCT__
14204fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14214fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14224fe895cdSHong Zhang {
14234fe895cdSHong Zhang   PetscErrorCode ierr;
14244fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
14254fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14264fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14274fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14284fe895cdSHong Zhang 
14294fe895cdSHong Zhang   PetscFunctionBegin;
14304fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14314fe895cdSHong Zhang     PetscScalar alpha = a;
14324fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
14334fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
14344fe895cdSHong Zhang     bnz = (PetscBLASInt)xa->nz;
14354fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
14364fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
14374fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
14384fe895cdSHong Zhang     bnz = (PetscBLASInt)xb->nz;
14394fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
14404fe895cdSHong Zhang   } else {
1441d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14424fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1443d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14444fe895cdSHong Zhang   }
14454fe895cdSHong Zhang   PetscFunctionReturn(0);
14464fe895cdSHong Zhang }
14474fe895cdSHong Zhang 
1448a5e6ed63SBarry Smith #undef __FUNCT__
1449a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14501302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1451a5e6ed63SBarry Smith {
14526849ba73SBarry Smith   PetscErrorCode ierr;
14531302d50aSBarry Smith   PetscInt       i;
1454a5e6ed63SBarry Smith   PetscTruth     flg;
1455a5e6ed63SBarry Smith 
14566849ba73SBarry Smith   PetscFunctionBegin;
1457a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1458a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1459a5e6ed63SBarry Smith     if (!flg) {
14601302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1461a5e6ed63SBarry Smith     }
1462a5e6ed63SBarry Smith   }
1463a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1464a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1465a5e6ed63SBarry Smith }
1466a5e6ed63SBarry Smith 
1467a5e6ed63SBarry Smith 
1468a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1469a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1470a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1471a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1472a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1473a9d4b620SHong Zhang        MatMult_MPISBAIJ,
147497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1475431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1476431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
148097304618SKris Buschelman /*10*/ 0,
1481a30f8f8cSSatish Balay        0,
1482a30f8f8cSSatish Balay        0,
14832798e883SHong Zhang        MatRelax_MPISBAIJ,
1484a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
148597304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1486a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1487a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1488a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1489a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
149097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1491a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1492a30f8f8cSSatish Balay        0,
1493a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1494a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1495dcf5cc72SBarry Smith /*25*/ 0,
1496a30f8f8cSSatish Balay        0,
1497a30f8f8cSSatish Balay        0,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        0,
150097304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1501b5df2d14SHong Zhang        0,
1502a30f8f8cSSatish Balay        0,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        0,
150597304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1506a30f8f8cSSatish Balay        0,
1507a30f8f8cSSatish Balay        0,
1508a30f8f8cSSatish Balay        0,
1509a30f8f8cSSatish Balay        0,
15104fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1511a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1512d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1513a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
15143c896bc6SHong Zhang        MatCopy_MPISBAIJ,
15158c07d4e3SBarry Smith /*45*/ 0,
1516a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1517a30f8f8cSSatish Balay        0,
1518a30f8f8cSSatish Balay        0,
1519a30f8f8cSSatish Balay        0,
1520521d7252SBarry Smith /*50*/ 0,
1521a30f8f8cSSatish Balay        0,
1522a30f8f8cSSatish Balay        0,
1523a30f8f8cSSatish Balay        0,
1524a30f8f8cSSatish Balay        0,
152597304618SKris Buschelman /*55*/ 0,
1526a30f8f8cSSatish Balay        0,
1527a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1528a30f8f8cSSatish Balay        0,
1529a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
153097304618SKris Buschelman /*60*/ 0,
1531a30f8f8cSSatish Balay        0,
1532a30f8f8cSSatish Balay        0,
1533357abbc8SBarry Smith        0,
153424d5174aSHong Zhang        0,
153597304618SKris Buschelman /*65*/ 0,
153624d5174aSHong Zhang        0,
153724d5174aSHong Zhang        0,
153824d5174aSHong Zhang        0,
153924d5174aSHong Zhang        0,
154097304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
154124d5174aSHong Zhang        0,
154297304618SKris Buschelman        0,
154397304618SKris Buschelman        0,
154497304618SKris Buschelman        0,
154597304618SKris Buschelman /*75*/ 0,
154697304618SKris Buschelman        0,
154797304618SKris Buschelman        0,
154897304618SKris Buschelman        0,
154997304618SKris Buschelman        0,
155097304618SKris Buschelman /*80*/ 0,
155197304618SKris Buschelman        0,
155297304618SKris Buschelman        0,
155397304618SKris Buschelman        0,
1554865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1555865e5f61SKris Buschelman /*85*/ 0,
1556865e5f61SKris Buschelman        0,
1557865e5f61SKris Buschelman        0,
1558865e5f61SKris Buschelman        0,
1559865e5f61SKris Buschelman        0,
1560865e5f61SKris Buschelman /*90*/ 0,
1561865e5f61SKris Buschelman        0,
1562865e5f61SKris Buschelman        0,
1563865e5f61SKris Buschelman        0,
1564865e5f61SKris Buschelman        0,
1565865e5f61SKris Buschelman /*95*/ 0,
1566865e5f61SKris Buschelman        0,
1567865e5f61SKris Buschelman        0,
156899cafbc1SBarry Smith        0,
156999cafbc1SBarry Smith        0,
157099cafbc1SBarry Smith /*100*/0,
157199cafbc1SBarry Smith        0,
157299cafbc1SBarry Smith        0,
157399cafbc1SBarry Smith        0,
157499cafbc1SBarry Smith        0,
157599cafbc1SBarry Smith /*105*/0,
157699cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1577d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1578d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1579d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
158099cafbc1SBarry Smith };
1581a30f8f8cSSatish Balay 
1582a30f8f8cSSatish Balay 
1583a30f8f8cSSatish Balay EXTERN_C_BEGIN
15844a2ae208SSatish Balay #undef __FUNCT__
15854a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1586be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1587a30f8f8cSSatish Balay {
1588a30f8f8cSSatish Balay   PetscFunctionBegin;
1589a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1590a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1591a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1592a30f8f8cSSatish Balay }
1593a30f8f8cSSatish Balay EXTERN_C_END
1594a30f8f8cSSatish Balay 
1595273d9f13SBarry Smith EXTERN_C_BEGIN
15964a2ae208SSatish Balay #undef __FUNCT__
1597a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1598be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1599a23d5eceSKris Buschelman {
1600a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1601dfbe8321SBarry Smith   PetscErrorCode ierr;
16021302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1603a23d5eceSKris Buschelman 
1604a23d5eceSKris Buschelman   PetscFunctionBegin;
16058c07d4e3SBarry Smith   ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
16068c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
16078c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1608a23d5eceSKris Buschelman 
1609a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1610a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1611a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
161277431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
161377431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1614899cda47SBarry Smith 
1615899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
1616899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
1617899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
1618899cda47SBarry Smith 
1619a23d5eceSKris Buschelman   if (d_nnz) {
1620899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
162177431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1622a23d5eceSKris Buschelman     }
1623a23d5eceSKris Buschelman   }
1624a23d5eceSKris Buschelman   if (o_nnz) {
1625899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
162677431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1627a23d5eceSKris Buschelman     }
1628a23d5eceSKris Buschelman   }
1629a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1630a23d5eceSKris Buschelman 
1631a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1632899cda47SBarry Smith   mbs = B->rmap.n/bs;
1633899cda47SBarry Smith   Mbs = B->rmap.N/bs;
1634899cda47SBarry Smith   if (mbs*bs != B->rmap.n) {
1635899cda47SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs);
1636a23d5eceSKris Buschelman   }
1637a23d5eceSKris Buschelman 
1638899cda47SBarry Smith   B->rmap.bs  = bs;
1639a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1640a23d5eceSKris Buschelman   b->mbs = mbs;
1641a23d5eceSKris Buschelman   b->nbs = mbs;
1642a23d5eceSKris Buschelman   b->Mbs = Mbs;
1643a23d5eceSKris Buschelman   b->Nbs = Mbs;
1644a23d5eceSKris Buschelman 
1645a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1646899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
1647a23d5eceSKris Buschelman   }
1648899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
1649899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
1650a23d5eceSKris Buschelman 
1651899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
1652899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
1653a23d5eceSKris Buschelman 
1654f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1655899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
16569c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1657c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
165852e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
16599c097c71SKris Buschelman 
1660f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1661899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
16624aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1663589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
166452e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1665a23d5eceSKris Buschelman 
1666a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1667a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1668a23d5eceSKris Buschelman 
1669a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1670a23d5eceSKris Buschelman }
1671a23d5eceSKris Buschelman EXTERN_C_END
1672a23d5eceSKris Buschelman 
16730bad9183SKris Buschelman /*MC
1674fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16750bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16760bad9183SKris Buschelman 
16770bad9183SKris Buschelman    Options Database Keys:
16780bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16790bad9183SKris Buschelman 
16800bad9183SKris Buschelman   Level: beginner
16810bad9183SKris Buschelman 
16820bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16830bad9183SKris Buschelman M*/
16840bad9183SKris Buschelman 
1685a23d5eceSKris Buschelman EXTERN_C_BEGIN
1686a23d5eceSKris Buschelman #undef __FUNCT__
16874a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1688be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1689b5df2d14SHong Zhang {
1690b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1691dfbe8321SBarry Smith   PetscErrorCode ierr;
1692b5df2d14SHong Zhang   PetscTruth     flg;
1693b5df2d14SHong Zhang 
1694b5df2d14SHong Zhang   PetscFunctionBegin;
1695b5df2d14SHong Zhang 
1696b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1697b0a32e0cSBarry Smith   B->data = (void*)b;
1698b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1699b5df2d14SHong Zhang 
1700b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1701b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1702b5df2d14SHong Zhang   B->mapping    = 0;
1703b5df2d14SHong Zhang   B->factor     = 0;
1704b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1705b5df2d14SHong Zhang 
1706b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1707b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1708b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1709b5df2d14SHong Zhang 
1710b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1711899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1712b5df2d14SHong Zhang 
1713b5df2d14SHong Zhang   /* build cache for off array entries formed */
1714b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1715b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1716b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1717b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1718b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1719b5df2d14SHong Zhang 
1720f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1721b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
172264a35ccbSBarry Smith   b->setvalueslen     = 0;
1723b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1724b5df2d14SHong Zhang #endif
1725b5df2d14SHong Zhang 
1726b5df2d14SHong Zhang   /* stuff used in block assembly */
1727b5df2d14SHong Zhang   b->barray       = 0;
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1730b5df2d14SHong Zhang   b->lvec         = 0;
1731b5df2d14SHong Zhang   b->Mvctx        = 0;
173240781036SHong Zhang   b->slvec0       = 0;
173340781036SHong Zhang   b->slvec0b      = 0;
173440781036SHong Zhang   b->slvec1       = 0;
173540781036SHong Zhang   b->slvec1a      = 0;
173640781036SHong Zhang   b->slvec1b      = 0;
173740781036SHong Zhang   b->sMvctx       = 0;
1738b5df2d14SHong Zhang 
1739b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1740b5df2d14SHong Zhang   b->rowindices   = 0;
1741b5df2d14SHong Zhang   b->rowvalues    = 0;
1742b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1743b5df2d14SHong Zhang 
1744b5df2d14SHong Zhang   /* hash table stuff */
1745b5df2d14SHong Zhang   b->ht           = 0;
1746b5df2d14SHong Zhang   b->hd           = 0;
1747b5df2d14SHong Zhang   b->ht_size      = 0;
1748b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1749b5df2d14SHong Zhang   b->ht_fact      = 0;
1750b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1751b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1752b5df2d14SHong Zhang 
175359ffdab8SBarry Smith   b->in_loc       = 0;
175459ffdab8SBarry Smith   b->v_loc        = 0;
175559ffdab8SBarry Smith   b->n_loc        = 0;
17568c07d4e3SBarry Smith   ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix","Mat");CHKERRQ(ierr);
17578c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1758b5df2d14SHong Zhang     if (flg) {
1759f6275e2eSBarry Smith       PetscReal fact = 1.39;
1760b5df2d14SHong Zhang       ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
17618c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1762b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1763b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1764ae15b995SBarry Smith       ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1765b5df2d14SHong Zhang     }
17668c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17678c07d4e3SBarry Smith 
1768b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1769b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1770b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1771b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1772b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1773b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1774b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1775b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1776b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1777a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1778a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1779a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
178023ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
178123ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
178223ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
178323ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
178417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1785b5df2d14SHong Zhang   PetscFunctionReturn(0);
1786b5df2d14SHong Zhang }
1787273d9f13SBarry Smith EXTERN_C_END
1788b5df2d14SHong Zhang 
1789209238afSKris Buschelman /*MC
1790002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1791209238afSKris Buschelman 
1792209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1793209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1794209238afSKris Buschelman 
1795209238afSKris Buschelman    Options Database Keys:
1796209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1797209238afSKris Buschelman 
1798209238afSKris Buschelman   Level: beginner
1799209238afSKris Buschelman 
1800209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1801209238afSKris Buschelman M*/
1802209238afSKris Buschelman 
1803209238afSKris Buschelman EXTERN_C_BEGIN
1804209238afSKris Buschelman #undef __FUNCT__
1805209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1806be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1807dfbe8321SBarry Smith {
18086849ba73SBarry Smith   PetscErrorCode ierr;
18091302d50aSBarry Smith   PetscMPIInt    size;
1810209238afSKris Buschelman 
1811209238afSKris Buschelman   PetscFunctionBegin;
1812209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1813209238afSKris Buschelman   if (size == 1) {
1814209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1815209238afSKris Buschelman   } else {
1816209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1817209238afSKris Buschelman   }
1818209238afSKris Buschelman   PetscFunctionReturn(0);
1819209238afSKris Buschelman }
1820209238afSKris Buschelman EXTERN_C_END
1821209238afSKris Buschelman 
18224a2ae208SSatish Balay #undef __FUNCT__
18234a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1824b5df2d14SHong Zhang /*@C
1825b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1826b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1827b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1828b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang    Collective on Mat
1831b5df2d14SHong Zhang 
1832b5df2d14SHong Zhang    Input Parameters:
1833b5df2d14SHong Zhang +  A - the matrix
1834b5df2d14SHong Zhang .  bs   - size of blockk
1835b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1836b5df2d14SHong Zhang            submatrix  (same for all local rows)
1837b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18386d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18396d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18406d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1841b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1842b5df2d14SHong Zhang            submatrix (same for all local rows).
1843b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1844b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1845b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1846b5df2d14SHong Zhang 
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang    Options Database Keys:
1849b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1850b5df2d14SHong Zhang                      block calculations (much slower)
1851b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1852b5df2d14SHong Zhang 
1853b5df2d14SHong Zhang    Notes:
1854b5df2d14SHong Zhang 
1855b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1856b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1857b5df2d14SHong Zhang 
185849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
185949a6f317SBarry Smith 
1860b5df2d14SHong Zhang    Storage Information:
1861b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1862b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1863b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1864b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1865b5df2d14SHong Zhang 
1866b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1867b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1868b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1869b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1870b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1871b5df2d14SHong Zhang 
1872b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1873b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1874b5df2d14SHong Zhang 
1875b5df2d14SHong Zhang .vb
1876b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1877b5df2d14SHong Zhang           -------------------
1878b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1879b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1880b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1881b5df2d14SHong Zhang           -------------------
1882b5df2d14SHong Zhang .ve
1883b5df2d14SHong Zhang 
1884b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1885b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18866d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18876d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1888b5df2d14SHong Zhang 
18896d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18906d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1891b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1892b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1893b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1894b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1895b5df2d14SHong Zhang    matrices.
1896b5df2d14SHong Zhang 
1897b5df2d14SHong Zhang    Level: intermediate
1898b5df2d14SHong Zhang 
1899b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1900b5df2d14SHong Zhang 
1901b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1902b5df2d14SHong Zhang @*/
1903be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1904b5df2d14SHong Zhang {
19051302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1906b5df2d14SHong Zhang 
1907b5df2d14SHong Zhang   PetscFunctionBegin;
1908a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1909a23d5eceSKris Buschelman   if (f) {
1910a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1911b5df2d14SHong Zhang   }
1912b5df2d14SHong Zhang   PetscFunctionReturn(0);
1913b5df2d14SHong Zhang }
1914b5df2d14SHong Zhang 
19154a2ae208SSatish Balay #undef __FUNCT__
19164a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1917a30f8f8cSSatish Balay /*@C
1918a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1919a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1920a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1921a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1922a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1923a30f8f8cSSatish Balay 
1924a30f8f8cSSatish Balay    Collective on MPI_Comm
1925a30f8f8cSSatish Balay 
1926a30f8f8cSSatish Balay    Input Parameters:
1927a30f8f8cSSatish Balay +  comm - MPI communicator
1928a30f8f8cSSatish Balay .  bs   - size of blockk
1929a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1930a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1931a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1932a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1933a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1934a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1935a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1936a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1937a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1938a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1939a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19406d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19416d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19426d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1943a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1944a30f8f8cSSatish Balay            submatrix (same for all local rows).
1945a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1946a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1947a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1948a30f8f8cSSatish Balay 
1949a30f8f8cSSatish Balay    Output Parameter:
1950a30f8f8cSSatish Balay .  A - the matrix
1951a30f8f8cSSatish Balay 
1952a30f8f8cSSatish Balay    Options Database Keys:
1953a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1954a30f8f8cSSatish Balay                      block calculations (much slower)
1955a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1956a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1957a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1958a30f8f8cSSatish Balay 
1959a30f8f8cSSatish Balay    Notes:
1960d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1961d1be2dadSMatthew Knepley 
1962a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1963a30f8f8cSSatish Balay    (possibly both).
1964a30f8f8cSSatish Balay 
1965a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1966a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1967a30f8f8cSSatish Balay 
196849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
196949a6f317SBarry Smith 
1970a30f8f8cSSatish Balay    Storage Information:
1971a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1972a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1973a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1974a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1975a30f8f8cSSatish Balay 
1976a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1977a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1978a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1979a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1980a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1981a30f8f8cSSatish Balay 
1982a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1983a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1984a30f8f8cSSatish Balay 
1985a30f8f8cSSatish Balay .vb
1986a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1987a30f8f8cSSatish Balay           -------------------
1988a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1989a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1990a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1991a30f8f8cSSatish Balay           -------------------
1992a30f8f8cSSatish Balay .ve
1993a30f8f8cSSatish Balay 
1994a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1995a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19966d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19976d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1998a30f8f8cSSatish Balay 
19996d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20006d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2001a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2002a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2003a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2004a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2005a30f8f8cSSatish Balay    matrices.
2006a30f8f8cSSatish Balay 
2007a30f8f8cSSatish Balay    Level: intermediate
2008a30f8f8cSSatish Balay 
2009a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2010a30f8f8cSSatish Balay 
2011a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2012a30f8f8cSSatish Balay @*/
2013a30f8f8cSSatish Balay 
2014be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2015a30f8f8cSSatish Balay {
20166849ba73SBarry Smith   PetscErrorCode ierr;
20171302d50aSBarry Smith   PetscMPIInt    size;
2018a30f8f8cSSatish Balay 
2019a30f8f8cSSatish Balay   PetscFunctionBegin;
2020f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2021f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2022273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2023273d9f13SBarry Smith   if (size > 1) {
2024b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2025b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2026273d9f13SBarry Smith   } else {
2027273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2028273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2029273d9f13SBarry Smith   }
2030a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2031a30f8f8cSSatish Balay }
2032a30f8f8cSSatish Balay 
2033a30f8f8cSSatish Balay 
20344a2ae208SSatish Balay #undef __FUNCT__
20354a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20366849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2037a30f8f8cSSatish Balay {
2038a30f8f8cSSatish Balay   Mat            mat;
2039a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2040dfbe8321SBarry Smith   PetscErrorCode ierr;
2041899cda47SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs;
2042387bc808SHong Zhang   PetscScalar    *array;
2043a30f8f8cSSatish Balay 
2044a30f8f8cSSatish Balay   PetscFunctionBegin;
2045a30f8f8cSSatish Balay   *newmat       = 0;
2046f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2047899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2048be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20491d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2050899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2051899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2052e1b6402fSHong Zhang 
205382327fa8SHong Zhang   mat->factor       = matin->factor;
2054273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
205582327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20567fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20577fff6886SHong Zhang 
2058b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2059a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2060a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2061a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2062a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2063a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2064a30f8f8cSSatish Balay 
2065899cda47SBarry Smith 
2066a30f8f8cSSatish Balay   a->size         = oldmat->size;
2067a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2068a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2069a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2070a30f8f8cSSatish Balay   a->rowindices   = 0;
2071a30f8f8cSSatish Balay   a->rowvalues    = 0;
2072a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2073a30f8f8cSSatish Balay   a->barray       = 0;
2074899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2075899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2076899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2077899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2078a30f8f8cSSatish Balay 
2079a30f8f8cSSatish Balay   /* hash table stuff */
2080a30f8f8cSSatish Balay   a->ht           = 0;
2081a30f8f8cSSatish Balay   a->hd           = 0;
2082a30f8f8cSSatish Balay   a->ht_size      = 0;
2083a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2084a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2085a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2086a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2087a30f8f8cSSatish Balay 
2088899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2089a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2090899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
2091a30f8f8cSSatish Balay   if (oldmat->colmap) {
2092a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2093a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2094a30f8f8cSSatish Balay #else
20951302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
209652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20971302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2098a30f8f8cSSatish Balay #endif
2099a30f8f8cSSatish Balay   } else a->colmap = 0;
2100387bc808SHong Zhang 
2101a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21021302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
210352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21041302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2105a30f8f8cSSatish Balay   } else a->garray = 0;
2106a30f8f8cSSatish Balay 
2107a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
210852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2109a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
211052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
211182327fa8SHong Zhang 
211282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
211352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
211482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
211552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2116387bc808SHong Zhang 
2117387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21181ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2119387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2120387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21211ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21221ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2123387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21241ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
212552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
212752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
212852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
212952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2130387bc808SHong Zhang 
2131387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2132387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2133387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
213452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
213582327fa8SHong Zhang 
2136a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
213752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2138a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
213952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2140b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2141a30f8f8cSSatish Balay   *newmat = mat;
2142a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2143a30f8f8cSSatish Balay }
2144a30f8f8cSSatish Balay 
2145a30f8f8cSSatish Balay #include "petscsys.h"
2146a30f8f8cSSatish Balay 
21474a2ae208SSatish Balay #undef __FUNCT__
21484a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2149f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2150a30f8f8cSSatish Balay {
2151a30f8f8cSSatish Balay   Mat            A;
21526849ba73SBarry Smith   PetscErrorCode ierr;
215313f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
215487828ca2SBarry Smith   PetscScalar    *vals,*buf;
2155a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2156a30f8f8cSSatish Balay   MPI_Status     status;
21572fd7e33dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens;
215813f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21592fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21601302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21611302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21621302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
216313f74950SBarry Smith   int            fd;
2164a30f8f8cSSatish Balay 
2165a30f8f8cSSatish Balay   PetscFunctionBegin;
21668c07d4e3SBarry Smith   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix","Mat");CHKERRQ(ierr);
21678c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21688c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2169a30f8f8cSSatish Balay 
2170a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2171a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2172a30f8f8cSSatish Balay   if (!rank) {
2173b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2174a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2175552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2176a30f8f8cSSatish Balay     if (header[3] < 0) {
217729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2178a30f8f8cSSatish Balay     }
2179a30f8f8cSSatish Balay   }
2180a30f8f8cSSatish Balay 
2181a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2183a30f8f8cSSatish Balay 
218429bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2185a30f8f8cSSatish Balay 
2186a30f8f8cSSatish Balay   /*
2187a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2188a30f8f8cSSatish Balay      divisible by the blocksize
2189a30f8f8cSSatish Balay   */
2190a30f8f8cSSatish Balay   Mbs        = M/bs;
2191a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2192a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2193a30f8f8cSSatish Balay   else                  Mbs++;
2194a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2195ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2196a30f8f8cSSatish Balay   }
2197a30f8f8cSSatish Balay 
2198a30f8f8cSSatish Balay   /* determine ownership of all rows */
2199a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2200a30f8f8cSSatish Balay   m          = mbs*bs;
2201a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2202a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2203a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2204a30f8f8cSSatish Balay   rowners[0] = 0;
2205a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2206a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2207a30f8f8cSSatish Balay   rstart = rowners[rank];
2208a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2209a30f8f8cSSatish Balay 
2210a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22112fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay   if (!rank) {
22131302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2214a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2215a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2216a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2217a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2218a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2219a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay   } else {
2221a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay   }
2223a30f8f8cSSatish Balay 
22240222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2225a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22261302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22271302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2228a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2229a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2230a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2231a30f8f8cSSatish Balay       }
2232a30f8f8cSSatish Balay     }
2233a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2234a30f8f8cSSatish Balay 
2235a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2236a30f8f8cSSatish Balay     maxnz = 0;
2237a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2238a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2239a30f8f8cSSatish Balay     }
22401302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2241a30f8f8cSSatish Balay 
2242a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2243a30f8f8cSSatish Balay     nz     = procsnz[0];
22441302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2245a30f8f8cSSatish Balay     mycols = ibuf;
2246a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2247a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2248a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2249a30f8f8cSSatish Balay 
2250a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2251a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2252a30f8f8cSSatish Balay       nz   = procsnz[i];
2253a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2254a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2255a30f8f8cSSatish Balay     }
2256a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2257a30f8f8cSSatish Balay     if (size != 1) {
2258a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2259a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2260a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2261a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2262a30f8f8cSSatish Balay     }
2263a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22640222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2265a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2266a30f8f8cSSatish Balay     nz = 0;
2267a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2268a30f8f8cSSatish Balay       nz += locrowlens[i];
2269a30f8f8cSSatish Balay     }
22701302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2271a30f8f8cSSatish Balay     mycols = ibuf;
2272a30f8f8cSSatish Balay     /* receive message of column indices*/
2273a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2274a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
227529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2276a30f8f8cSSatish Balay   }
2277a30f8f8cSSatish Balay 
2278a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22791302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2280a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22811302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22821302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2283a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2284a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2285a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2286a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2287a30f8f8cSSatish Balay     dcount  = 0;
2288a30f8f8cSSatish Balay     odcount = 0;
2289a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2290a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2291a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22920222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2293a30f8f8cSSatish Balay         if (!mask[tmp]) {
2294a30f8f8cSSatish Balay           mask[tmp] = 1;
22950222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22960222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2297a30f8f8cSSatish Balay         }
2298a30f8f8cSSatish Balay       }
2299a30f8f8cSSatish Balay       rowcount++;
2300a30f8f8cSSatish Balay     }
2301a30f8f8cSSatish Balay 
23020222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23030222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2304a30f8f8cSSatish Balay 
2305a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2306a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2307a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2308a30f8f8cSSatish Balay   }
2309a30f8f8cSSatish Balay 
2310a30f8f8cSSatish Balay   /* create our matrix */
2311f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2312f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
231322191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
231422191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2315273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2316a30f8f8cSSatish Balay 
2317a30f8f8cSSatish Balay   if (!rank) {
231887828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2319a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2320a30f8f8cSSatish Balay     nz = procsnz[0];
2321a30f8f8cSSatish Balay     vals = buf;
2322a30f8f8cSSatish Balay     mycols = ibuf;
2323a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2324a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2325a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2326a30f8f8cSSatish Balay 
2327a30f8f8cSSatish Balay     /* insert into matrix */
2328a30f8f8cSSatish Balay     jj      = rstart*bs;
2329a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23307e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2331a30f8f8cSSatish Balay       mycols += locrowlens[i];
2332a30f8f8cSSatish Balay       vals   += locrowlens[i];
2333a30f8f8cSSatish Balay       jj++;
2334a30f8f8cSSatish Balay     }
23357e06b45fSHong Zhang 
2336a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2337a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2338a30f8f8cSSatish Balay       nz   = procsnz[i];
2339a30f8f8cSSatish Balay       vals = buf;
2340a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2341a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2342a30f8f8cSSatish Balay     }
2343a30f8f8cSSatish Balay     /* the last proc */
2344a30f8f8cSSatish Balay     if (size != 1){
2345a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2346a30f8f8cSSatish Balay       vals = buf;
2347a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2348a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2349a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2350a30f8f8cSSatish Balay     }
2351a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23527e06b45fSHong Zhang 
2353a30f8f8cSSatish Balay   } else {
2354a30f8f8cSSatish Balay     /* receive numeric values */
235587828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2356a30f8f8cSSatish Balay 
2357a30f8f8cSSatish Balay     /* receive message of values*/
2358a30f8f8cSSatish Balay     vals   = buf;
2359a30f8f8cSSatish Balay     mycols = ibuf;
2360a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2361a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
236229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2363a30f8f8cSSatish Balay 
2364a30f8f8cSSatish Balay     /* insert into matrix */
2365a30f8f8cSSatish Balay     jj      = rstart*bs;
2366a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2367a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2368a30f8f8cSSatish Balay       mycols += locrowlens[i];
2369a30f8f8cSSatish Balay       vals   += locrowlens[i];
2370a30f8f8cSSatish Balay       jj++;
2371a30f8f8cSSatish Balay     }
2372a30f8f8cSSatish Balay   }
23737e06b45fSHong Zhang 
2374a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2375a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2376a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2377a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2378a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2379a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2380a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2381a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238222191285SKris Buschelman   *newmat = A;
2383a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2384a30f8f8cSSatish Balay }
2385a30f8f8cSSatish Balay 
23864a2ae208SSatish Balay #undef __FUNCT__
23874a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2388dcf5cc72SBarry Smith /*XXXXX@
2389a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2390a30f8f8cSSatish Balay 
2391a30f8f8cSSatish Balay    Input Parameters:
2392a30f8f8cSSatish Balay .  mat  - the matrix
2393a30f8f8cSSatish Balay .  fact - factor
2394a30f8f8cSSatish Balay 
2395a30f8f8cSSatish Balay    Collective on Mat
2396a30f8f8cSSatish Balay 
2397a30f8f8cSSatish Balay    Level: advanced
2398a30f8f8cSSatish Balay 
2399a30f8f8cSSatish Balay   Notes:
2400a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2401a30f8f8cSSatish Balay 
2402a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2403a30f8f8cSSatish Balay 
2404a30f8f8cSSatish Balay .seealso: MatSetOption()
2405dcf5cc72SBarry Smith @XXXXX*/
2406dcf5cc72SBarry Smith 
240724d5174aSHong Zhang 
24084a2ae208SSatish Balay #undef __FUNCT__
24094a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2410dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
241124d5174aSHong Zhang {
241224d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2413f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2414ca54ac64SHong Zhang   PetscReal      atmp;
241587828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2416dfbe8321SBarry Smith   PetscErrorCode ierr;
24171302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24181302d50aSBarry Smith   PetscMPIInt    rank,size;
24191302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
242087828ca2SBarry Smith   PetscScalar    *va;
24218a1c53f2SBarry Smith   MatScalar      *ba;
2422f4c0e9e4SHong Zhang   MPI_Status     stat;
242324d5174aSHong Zhang 
242424d5174aSHong Zhang   PetscFunctionBegin;
2425d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
24261ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2427f4c0e9e4SHong Zhang 
242856faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
242956faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2430f4c0e9e4SHong Zhang 
2431899cda47SBarry Smith   bs   = A->rmap.bs;
2432f4c0e9e4SHong Zhang   mbs  = a->mbs;
2433f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2434f4c0e9e4SHong Zhang   ba   = b->a;
2435f4c0e9e4SHong Zhang   bi   = b->i;
2436f4c0e9e4SHong Zhang   bj   = b->j;
2437f4c0e9e4SHong Zhang 
2438f4c0e9e4SHong Zhang   /* find ownerships */
2439899cda47SBarry Smith   rowners_bs = A->rmap.range;
2440f4c0e9e4SHong Zhang 
2441f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
244282502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2443ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2444f4c0e9e4SHong Zhang 
2445f4c0e9e4SHong Zhang   /* row_max for B */
2446b8475685SHong Zhang   if (rank != size-1){
2447f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2448f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2449f4c0e9e4SHong Zhang       brow  = bs*i;
2450f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2451f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2452f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2453ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
245404d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2455f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2456f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2457ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2458ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2459f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2460f4c0e9e4SHong Zhang           }
2461f4c0e9e4SHong Zhang         }
2462f4c0e9e4SHong Zhang         bj++;
2463f4c0e9e4SHong Zhang       }
2464f4c0e9e4SHong Zhang     }
2465f4c0e9e4SHong Zhang 
2466f4c0e9e4SHong Zhang     /* send values to its owners */
2467f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2468f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2469ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
247056faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2471ca54ac64SHong Zhang     }
2472f4c0e9e4SHong Zhang   }
2473f4c0e9e4SHong Zhang 
2474f4c0e9e4SHong Zhang   /* receive values */
2475ca54ac64SHong Zhang   if (rank){
2476f4c0e9e4SHong Zhang     rvalues = work;
2477ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2478f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
247956faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2480f4c0e9e4SHong Zhang       /* process values */
2481f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2482ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2483f4c0e9e4SHong Zhang       }
2484f4c0e9e4SHong Zhang     }
2485ca54ac64SHong Zhang   }
2486f4c0e9e4SHong Zhang 
24871ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2488ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
248924d5174aSHong Zhang   PetscFunctionReturn(0);
249024d5174aSHong Zhang }
24912798e883SHong Zhang 
24922798e883SHong Zhang #undef __FUNCT__
24932798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
24941302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24952798e883SHong Zhang {
24962798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2497dfbe8321SBarry Smith   PetscErrorCode ierr;
2498899cda47SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap.bs;
2499efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2500ffe4fb16SHong Zhang   Vec            bb1;
2501ffe4fb16SHong Zhang 
2502ffe4fb16SHong Zhang   PetscFunctionBegin;
250377431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2504ffe4fb16SHong Zhang   if (bs > 1)
2505ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2506ffe4fb16SHong Zhang 
2507ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2508ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2509ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2510ffe4fb16SHong Zhang       its--;
2511ffe4fb16SHong Zhang     }
2512ffe4fb16SHong Zhang 
2513ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2514ffe4fb16SHong Zhang     while (its--){
2515ffe4fb16SHong Zhang 
2516ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2517ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2518ffe4fb16SHong Zhang 
2519ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25201ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25211ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2522ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25231ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2524ffe4fb16SHong Zhang 
2525efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2526ffe4fb16SHong Zhang 
2527ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25281ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25291ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2530ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25311ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2532ffe4fb16SHong Zhang 
2533ffe4fb16SHong Zhang       /* set slvec1b = 0 */
25342dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2535ffe4fb16SHong Zhang 
2536ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
25371ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25381ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2539ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2540ffe4fb16SHong Zhang 
2541ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2542ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2543ffe4fb16SHong Zhang 
2544ffe4fb16SHong Zhang       /* local diagonal sweep */
2545ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2546ffe4fb16SHong Zhang     }
2547ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2548ffe4fb16SHong Zhang   } else {
2549ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2550ffe4fb16SHong Zhang   }
2551ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2552ffe4fb16SHong Zhang }
2553ffe4fb16SHong Zhang 
2554ffe4fb16SHong Zhang #undef __FUNCT__
2555ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25561302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2557ffe4fb16SHong Zhang {
2558ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2559dfbe8321SBarry Smith   PetscErrorCode ierr;
25602798e883SHong Zhang   Vec            lvec1,bb1;
25612798e883SHong Zhang 
25622798e883SHong Zhang   PetscFunctionBegin;
256377431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2564899cda47SBarry Smith   if (matin->rmap.bs > 1)
25652798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25662798e883SHong Zhang 
2567c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25682798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2569bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25702798e883SHong Zhang       its--;
25712798e883SHong Zhang     }
25722798e883SHong Zhang 
25732798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25742798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25752798e883SHong Zhang     while (its--){
25762798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25772798e883SHong Zhang 
25782798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25792798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2580efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
25812798e883SHong Zhang 
25822798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25832798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25842798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25852798e883SHong Zhang 
25862798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2587efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
25882798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25892798e883SHong Zhang 
25902798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25912798e883SHong Zhang 
2592c14dc6b6SHong Zhang       /* diagonal sweep */
2593bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25942798e883SHong Zhang     }
25952798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25962798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2597c14dc6b6SHong Zhang   } else {
2598c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2599c14dc6b6SHong Zhang   }
26002798e883SHong Zhang   PetscFunctionReturn(0);
26012798e883SHong Zhang }
26022798e883SHong Zhang 
2603