1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 103a30f8f8cSSatish Balay N = nrow++ - 1; \ 104a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 105a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 106a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 107a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 110a30f8f8cSSatish Balay rp[_i] = bcol; \ 111a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 112a30f8f8cSSatish Balay a_noinsert:; \ 113a30f8f8cSSatish Balay ailen[brow] = nrow; \ 114a30f8f8cSSatish Balay } 115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 116a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 117a30f8f8cSSatish Balay { \ 118a30f8f8cSSatish Balay brow = row/bs; \ 119a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 120a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 121a30f8f8cSSatish Balay bcol = col/bs; \ 122a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 123a30f8f8cSSatish Balay low = 0; high = nrow; \ 124a30f8f8cSSatish Balay while (high-low > 3) { \ 125a30f8f8cSSatish Balay t = (low+high)/2; \ 126a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 127a30f8f8cSSatish Balay else low = t; \ 128a30f8f8cSSatish Balay } \ 129a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 130a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 131a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 132a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 133a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 134a30f8f8cSSatish Balay else *bap = value; \ 135a30f8f8cSSatish Balay goto b_noinsert; \ 136a30f8f8cSSatish Balay } \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 139085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 140421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay b_noinsert:; \ 151a30f8f8cSSatish Balay bilen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #endif 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1564a2ae208SSatish Balay #undef __FUNCT__ 1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 159a30f8f8cSSatish Balay { 160a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 161dfbe8321SBarry Smith PetscErrorCode ierr; 1621302d50aSBarry Smith PetscInt i,N = m*n; 163a30f8f8cSSatish Balay MatScalar *vsingle; 164a30f8f8cSSatish Balay 165a30f8f8cSSatish Balay PetscFunctionBegin; 166a30f8f8cSSatish Balay if (N > b->setvalueslen) { 16705b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 16882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 169a30f8f8cSSatish Balay b->setvalueslen = N; 170a30f8f8cSSatish Balay } 171a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 172a30f8f8cSSatish Balay 173a30f8f8cSSatish Balay for (i=0; i<N; i++) { 174a30f8f8cSSatish Balay vsingle[i] = v[i]; 175a30f8f8cSSatish Balay } 176a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 177a30f8f8cSSatish Balay PetscFunctionReturn(0); 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 1804a2ae208SSatish Balay #undef __FUNCT__ 1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 183a30f8f8cSSatish Balay { 184a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 185dfbe8321SBarry Smith PetscErrorCode ierr; 1861302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 187a30f8f8cSSatish Balay MatScalar *vsingle; 188a30f8f8cSSatish Balay 189a30f8f8cSSatish Balay PetscFunctionBegin; 190a30f8f8cSSatish Balay if (N > b->setvalueslen) { 19105b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 19282502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 193a30f8f8cSSatish Balay b->setvalueslen = N; 194a30f8f8cSSatish Balay } 195a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 196a30f8f8cSSatish Balay for (i=0; i<N; i++) { 197a30f8f8cSSatish Balay vsingle[i] = v[i]; 198a30f8f8cSSatish Balay } 199a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 200a30f8f8cSSatish Balay PetscFunctionReturn(0); 201a30f8f8cSSatish Balay } 202a30f8f8cSSatish Balay #endif 203a30f8f8cSSatish Balay 204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 205a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 206a30f8f8cSSatish Balay */ 2074a2ae208SSatish Balay #undef __FUNCT__ 208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar" 2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 210a30f8f8cSSatish Balay { 211a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 212a30f8f8cSSatish Balay MatScalar value; 213b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 214dfbe8321SBarry Smith PetscErrorCode ierr; 2151302d50aSBarry Smith PetscInt i,j,row,col; 216899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 217899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 218899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 219a30f8f8cSSatish Balay 220a30f8f8cSSatish Balay /* Some Variables required in the macro */ 221a30f8f8cSSatish Balay Mat A = baij->A; 222a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2231302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 224a30f8f8cSSatish Balay MatScalar *aa=a->a; 225a30f8f8cSSatish Balay 226a30f8f8cSSatish Balay Mat B = baij->B; 227a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2281302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 229a30f8f8cSSatish Balay MatScalar *ba=b->a; 230a30f8f8cSSatish Balay 2311302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2321302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 233a30f8f8cSSatish Balay MatScalar *ap,*bap; 234a30f8f8cSSatish Balay 235a30f8f8cSSatish Balay /* for stash */ 236910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 237910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 238a30f8f8cSSatish Balay 239a30f8f8cSSatish Balay PetscFunctionBegin; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay if (!baij->donotstash){ 24259ffdab8SBarry Smith if (n > baij->n_loc) { 24359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 24459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 24559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 24659ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 24759ffdab8SBarry Smith baij->n_loc = n; 24859ffdab8SBarry Smith } 24959ffdab8SBarry Smith in_loc = baij->in_loc; 25059ffdab8SBarry Smith v_loc = baij->v_loc; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay for (i=0; i<m; i++) { 254a30f8f8cSSatish Balay if (im[i] < 0) continue; 2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 256899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 257a30f8f8cSSatish Balay #endif 258a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 259a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 260a30f8f8cSSatish Balay for (j=0; j<n; j++) { 26101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 26201b2bd88SHong Zhang if (a->ignore_ltriangular){ 26301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 26401b2bd88SHong Zhang } else { 26501b2bd88SHong Zhang SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)"); 26601b2bd88SHong Zhang } 26701b2bd88SHong Zhang } 268a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 269a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 270a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 271a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 272a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 273a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 274a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 275a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 277899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);} 278a30f8f8cSSatish Balay #endif 279a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 280a30f8f8cSSatish Balay if (mat->was_assembled) { 281a30f8f8cSSatish Balay if (!baij->colmap) { 282653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 285a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28671730473SSatish Balay col = col - 1; 287a30f8f8cSSatish Balay #else 28871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 289a30f8f8cSSatish Balay #endif 290a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 291a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 292a30f8f8cSSatish Balay col = in[j]; 293a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 294a30f8f8cSSatish Balay B = baij->B; 295a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 296a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 297a30f8f8cSSatish Balay ba=b->a; 29871730473SSatish Balay } else col += in[j]%bs; 299a30f8f8cSSatish Balay } else col = in[j]; 300a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 301a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 302a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay } 305a30f8f8cSSatish Balay } else { /* off processor entry */ 306a30f8f8cSSatish Balay if (!baij->donotstash) { 307a30f8f8cSSatish Balay n_loc = 0; 308a30f8f8cSSatish Balay for (j=0; j<n; j++){ 309f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 310a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 311a30f8f8cSSatish Balay if (roworiented) { 312a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 313a30f8f8cSSatish Balay } else { 314a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay n_loc++; 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 319a30f8f8cSSatish Balay } 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay } 322a30f8f8cSSatish Balay PetscFunctionReturn(0); 323a30f8f8cSSatish Balay } 324a30f8f8cSSatish Balay 3254a2ae208SSatish Balay #undef __FUNCT__ 326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 328a30f8f8cSSatish Balay { 3290880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 330f15d580aSBarry Smith const MatScalar *value; 331f15d580aSBarry Smith MatScalar *barray=baij->barray; 3320880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 333dfbe8321SBarry Smith PetscErrorCode ierr; 334899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 335899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 336899cda47SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2; 3370880e062SHong Zhang 338a30f8f8cSSatish Balay PetscFunctionBegin; 3390880e062SHong Zhang if(!barray) { 3400880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3410880e062SHong Zhang baij->barray = barray; 3420880e062SHong Zhang } 3430880e062SHong Zhang 3440880e062SHong Zhang if (roworiented) { 3450880e062SHong Zhang stepval = (n-1)*bs; 3460880e062SHong Zhang } else { 3470880e062SHong Zhang stepval = (m-1)*bs; 3480880e062SHong Zhang } 3490880e062SHong Zhang for (i=0; i<m; i++) { 3500880e062SHong Zhang if (im[i] < 0) continue; 3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 35277431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3530880e062SHong Zhang #endif 3540880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3550880e062SHong Zhang row = im[i] - rstart; 3560880e062SHong Zhang for (j=0; j<n; j++) { 3570880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3580880e062SHong Zhang if ((roworiented) && (n == 1)) { 359f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3600880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 361f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3620880e062SHong Zhang } else { /* Here a copy is required */ 3630880e062SHong Zhang if (roworiented) { 3640880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3650880e062SHong Zhang } else { 3660880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3670880e062SHong Zhang } 3680880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3690880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3700880e062SHong Zhang *barray++ = *value++; 3710880e062SHong Zhang } 3720880e062SHong Zhang } 3730880e062SHong Zhang barray -=bs2; 3740880e062SHong Zhang } 3750880e062SHong Zhang 3760880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3770880e062SHong Zhang col = in[j] - cstart; 3780880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3790880e062SHong Zhang } 3800880e062SHong Zhang else if (in[j] < 0) continue; 3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 38277431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3830880e062SHong Zhang #endif 3840880e062SHong Zhang else { 3850880e062SHong Zhang if (mat->was_assembled) { 3860880e062SHong Zhang if (!baij->colmap) { 387653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3880880e062SHong Zhang } 3890880e062SHong Zhang 3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3921302d50aSBarry Smith { PetscInt data; 3930880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3940880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3950880e062SHong Zhang } 3960880e062SHong Zhang #else 3970880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3980880e062SHong Zhang #endif 3990880e062SHong Zhang #endif 4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4010880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4020880e062SHong Zhang col = (col - 1)/bs; 4030880e062SHong Zhang #else 4040880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4050880e062SHong Zhang #endif 4060880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4070880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4080880e062SHong Zhang col = in[j]; 4090880e062SHong Zhang } 4100880e062SHong Zhang } 4110880e062SHong Zhang else col = in[j]; 412e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4130880e062SHong Zhang } 4140880e062SHong Zhang } 4150880e062SHong Zhang } else { 4160880e062SHong Zhang if (!baij->donotstash) { 4170880e062SHong Zhang if (roworiented) { 4180880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4190880e062SHong Zhang } else { 4200880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4210880e062SHong Zhang } 4220880e062SHong Zhang } 4230880e062SHong Zhang } 4240880e062SHong Zhang } 4250880e062SHong Zhang PetscFunctionReturn(0); 426a30f8f8cSSatish Balay } 427a30f8f8cSSatish Balay 4284a2ae208SSatish Balay #undef __FUNCT__ 4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 431a30f8f8cSSatish Balay { 432f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4336849ba73SBarry Smith PetscErrorCode ierr; 434899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 435899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 436a30f8f8cSSatish Balay 437a30f8f8cSSatish Balay PetscFunctionBegin; 438a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43977431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 440899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 441a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 442a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 443a30f8f8cSSatish Balay for (j=0; j<n; j++) { 44477431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 445899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 446a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 447a30f8f8cSSatish Balay col = idxn[j] - bscstart; 448c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 449a30f8f8cSSatish Balay } else { 450a30f8f8cSSatish Balay if (!baij->colmap) { 451653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 452a30f8f8cSSatish Balay } 453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 454a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 455a30f8f8cSSatish Balay data --; 456a30f8f8cSSatish Balay #else 457a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 458a30f8f8cSSatish Balay #endif 459a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 460a30f8f8cSSatish Balay else { 461a30f8f8cSSatish Balay col = data + idxn[j]%bs; 462e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 463a30f8f8cSSatish Balay } 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay } 466a30f8f8cSSatish Balay } else { 46729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 468a30f8f8cSSatish Balay } 469a30f8f8cSSatish Balay } 470a30f8f8cSSatish Balay PetscFunctionReturn(0); 471a30f8f8cSSatish Balay } 472a30f8f8cSSatish Balay 4734a2ae208SSatish Balay #undef __FUNCT__ 4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 476a30f8f8cSSatish Balay { 477a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 478dfbe8321SBarry Smith PetscErrorCode ierr; 479a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 480a30f8f8cSSatish Balay 481a30f8f8cSSatish Balay PetscFunctionBegin; 482a30f8f8cSSatish Balay if (baij->size == 1) { 483a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 484a30f8f8cSSatish Balay } else { 485a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 486f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 487a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 488a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 489a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 490a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 491d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 492a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 493a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4940b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4950b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4960b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4970b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 498899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 499899cda47SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs; 5000b8dc8d2SHong Zhang MatScalar *v; 5010b8dc8d2SHong Zhang 502899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 503899cda47SBarry Smith rsum2 = rsum + mat->cmap.N; 504899cda47SBarry Smith ierr = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 5050b8dc8d2SHong Zhang /* Amat */ 5060b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5070b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5080b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5090b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5100b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5110b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5120b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5130b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5140b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5150b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5160b8dc8d2SHong Zhang /* non-diagonal block */ 5170b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5180b8dc8d2SHong Zhang } 5190b8dc8d2SHong Zhang } 5200b8dc8d2SHong Zhang } 5210b8dc8d2SHong Zhang } 5220b8dc8d2SHong Zhang /* Bmat */ 5230b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5240b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5250b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5260b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5270b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5280b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5290b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5300b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5310b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5320b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5330b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5340b8dc8d2SHong Zhang } 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang } 5370b8dc8d2SHong Zhang } 538899cda47SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5390b8dc8d2SHong Zhang *norm = 0.0; 540899cda47SBarry Smith for (col=0; col<mat->cmap.N; col++) { 5410b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5420b8dc8d2SHong Zhang } 5430b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 544a30f8f8cSSatish Balay } else { 54529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay } 548a30f8f8cSSatish Balay PetscFunctionReturn(0); 549a30f8f8cSSatish Balay } 550a30f8f8cSSatish Balay 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 554a30f8f8cSSatish Balay { 555a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 556dfbe8321SBarry Smith PetscErrorCode ierr; 5571302d50aSBarry Smith PetscInt nstash,reallocs; 558a30f8f8cSSatish Balay InsertMode addv; 559a30f8f8cSSatish Balay 560a30f8f8cSSatish Balay PetscFunctionBegin; 561a30f8f8cSSatish Balay if (baij->donotstash) { 562a30f8f8cSSatish Balay PetscFunctionReturn(0); 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 566a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 567a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 571a30f8f8cSSatish Balay 572899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr); 573899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 575ae15b995SBarry Smith ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 576a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 577ae15b995SBarry Smith ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 578a30f8f8cSSatish Balay PetscFunctionReturn(0); 579a30f8f8cSSatish Balay } 580a30f8f8cSSatish Balay 5814a2ae208SSatish Balay #undef __FUNCT__ 5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 584a30f8f8cSSatish Balay { 585a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 586a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5876849ba73SBarry Smith PetscErrorCode ierr; 58813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5891302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 59013f74950SBarry Smith PetscMPIInt n; 591a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 592a30f8f8cSSatish Balay MatScalar *val; 593a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 594a30f8f8cSSatish Balay 59591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 596a30f8f8cSSatish Balay PetscFunctionBegin; 597a30f8f8cSSatish Balay 598a30f8f8cSSatish Balay if (!baij->donotstash) { 599a30f8f8cSSatish Balay while (1) { 600a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 601a30f8f8cSSatish Balay if (!flg) break; 602a30f8f8cSSatish Balay 603a30f8f8cSSatish Balay for (i=0; i<n;) { 604a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 605a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 606a30f8f8cSSatish Balay if (j < n) ncols = j-i; 607a30f8f8cSSatish Balay else ncols = n-i; 608a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 609a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 610a30f8f8cSSatish Balay i = j; 611a30f8f8cSSatish Balay } 612a30f8f8cSSatish Balay } 613a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 614a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 615a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 616a30f8f8cSSatish Balay restore the original flags */ 617a30f8f8cSSatish Balay r1 = baij->roworiented; 618a30f8f8cSSatish Balay r2 = a->roworiented; 61991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 620a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 621a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 62291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 623a30f8f8cSSatish Balay while (1) { 624a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 625a30f8f8cSSatish Balay if (!flg) break; 626a30f8f8cSSatish Balay 627a30f8f8cSSatish Balay for (i=0; i<n;) { 628a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 629a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 630a30f8f8cSSatish Balay if (j < n) ncols = j-i; 631a30f8f8cSSatish Balay else ncols = n-i; 632a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 633a30f8f8cSSatish Balay i = j; 634a30f8f8cSSatish Balay } 635a30f8f8cSSatish Balay } 636a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 637a30f8f8cSSatish Balay baij->roworiented = r1; 638a30f8f8cSSatish Balay a->roworiented = r2; 63991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 643a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 644a30f8f8cSSatish Balay 645a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 646a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 647a30f8f8cSSatish Balay /* 648a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 649a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 650a30f8f8cSSatish Balay */ 651a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 652a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 653a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 654c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 660a30f8f8cSSatish Balay } 66191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 662a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 663a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 664a30f8f8cSSatish Balay 665a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 666a30f8f8cSSatish Balay baij->rowvalues = 0; 6675222a1afSHong Zhang 668a30f8f8cSSatish Balay PetscFunctionReturn(0); 669a30f8f8cSSatish Balay } 670a30f8f8cSSatish Balay 671799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 6724a2ae208SSatish Balay #undef __FUNCT__ 6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 675a30f8f8cSSatish Balay { 676a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 677dfbe8321SBarry Smith PetscErrorCode ierr; 678899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 6791302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 68032077d6dSBarry Smith PetscTruth iascii,isdraw; 681b0a32e0cSBarry Smith PetscViewer sviewer; 682f3ef73ceSBarry Smith PetscViewerFormat format; 683a30f8f8cSSatish Balay 684a30f8f8cSSatish Balay PetscFunctionBegin; 68532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 686fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68732077d6dSBarry Smith if (iascii) { 688b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 689456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 690a30f8f8cSSatish Balay MatInfo info; 691a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 694899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 695899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 696a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 698a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 700b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 701a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 702a30f8f8cSSatish Balay PetscFunctionReturn(0); 703fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 70477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 705a30f8f8cSSatish Balay PetscFunctionReturn(0); 706c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 707c1490034SHong Zhang PetscFunctionReturn(0); 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay 711a30f8f8cSSatish Balay if (isdraw) { 712b0a32e0cSBarry Smith PetscDraw draw; 713a30f8f8cSSatish Balay PetscTruth isnull; 714b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 715b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay 718a30f8f8cSSatish Balay if (size == 1) { 719e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 720a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 721a30f8f8cSSatish Balay } else { 722a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 723a30f8f8cSSatish Balay Mat A; 72465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 72565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 726899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 727a30f8f8cSSatish Balay MatScalar *a; 728a30f8f8cSSatish Balay 729f204ca49SKris Buschelman /* Should this be the same type as mat? */ 730f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 731a30f8f8cSSatish Balay if (!rank) { 732f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 733a30f8f8cSSatish Balay } else { 734f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 735a30f8f8cSSatish Balay } 736f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 737899cda47SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 739a30f8f8cSSatish Balay 740a30f8f8cSSatish Balay /* copy over the A part */ 74165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 742a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7431302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 744a30f8f8cSSatish Balay 745a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 746e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 747a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 748a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 749e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 750a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 751a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 752a30f8f8cSSatish Balay col++; a += bs; 753a30f8f8cSSatish Balay } 754a30f8f8cSSatish Balay } 755a30f8f8cSSatish Balay } 756a30f8f8cSSatish Balay /* copy over the B part */ 75765d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75865d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 759a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 760e9f7bc9eSHong Zhang 761e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 762a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 763a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 764a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 765a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 766799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 767a30f8f8cSSatish Balay col++; a += bs; 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 772a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 773a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 774a30f8f8cSSatish Balay /* 775a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 776b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 777a30f8f8cSSatish Balay */ 778b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 77965d70643SHong Zhang if (!rank) { 780e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 781a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 782a30f8f8cSSatish Balay } 783b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 784a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 785a30f8f8cSSatish Balay } 786a30f8f8cSSatish Balay PetscFunctionReturn(0); 787a30f8f8cSSatish Balay } 788a30f8f8cSSatish Balay 7894a2ae208SSatish Balay #undef __FUNCT__ 7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 791dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 792a30f8f8cSSatish Balay { 793dfbe8321SBarry Smith PetscErrorCode ierr; 79432077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 795a30f8f8cSSatish Balay 796a30f8f8cSSatish Balay PetscFunctionBegin; 79732077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 798fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 799b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 800fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 80132077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 802a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 803a30f8f8cSSatish Balay } else { 8041302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 805a30f8f8cSSatish Balay } 806a30f8f8cSSatish Balay PetscFunctionReturn(0); 807a30f8f8cSSatish Balay } 808a30f8f8cSSatish Balay 8094a2ae208SSatish Balay #undef __FUNCT__ 8104a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 811dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 812a30f8f8cSSatish Balay { 813a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 814dfbe8321SBarry Smith PetscErrorCode ierr; 815a30f8f8cSSatish Balay 816a30f8f8cSSatish Balay PetscFunctionBegin; 817a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 818899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 819a30f8f8cSSatish Balay #endif 820a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 822a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 823a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 824a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 825a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 826a30f8f8cSSatish Balay #else 82705b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 828a30f8f8cSSatish Balay #endif 82905b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 830a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 831a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 83240781036SHong Zhang if (baij->slvec0) { 83340781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 83440781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 83540781036SHong Zhang } 83640781036SHong Zhang if (baij->slvec1) { 83740781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83840781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 83940781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 84040781036SHong Zhang } 84140781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 84205b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 84305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 84405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 845a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 84605b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 847a30f8f8cSSatish Balay #endif 84859ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 84959ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 850899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 851a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 852901853e0SKris Buschelman 853901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 854901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 855901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 856901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 857a30f8f8cSSatish Balay PetscFunctionReturn(0); 858a30f8f8cSSatish Balay } 859a30f8f8cSSatish Balay 8604a2ae208SSatish Balay #undef __FUNCT__ 861a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 862dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 863a9d4b620SHong Zhang { 864a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 865dfbe8321SBarry Smith PetscErrorCode ierr; 866899cda47SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap.bs; 867a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 868a9d4b620SHong Zhang 869a9d4b620SHong Zhang PetscFunctionBegin; 870a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 871899cda47SBarry Smith if (nt != A->cmap.n) { 872a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 873a9d4b620SHong Zhang } 874a9d4b620SHong Zhang 875a9d4b620SHong Zhang /* diagonal part */ 876a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8772dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 878a9d4b620SHong Zhang 879a9d4b620SHong Zhang /* subdiagonal part */ 880a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 881899cda47SBarry Smith CHKMEMQ; 882a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8831ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8841ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 885899cda47SBarry Smith CHKMEMQ; 886a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 887899cda47SBarry Smith CHKMEMQ; 8881ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 889a9d4b620SHong Zhang 890899cda47SBarry Smith CHKMEMQ; 891a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 892899cda47SBarry Smith CHKMEMQ; 8931ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 894899cda47SBarry Smith CHKMEMQ; 895a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 896899cda47SBarry Smith CHKMEMQ; 897a9d4b620SHong Zhang /* supperdiagonal part */ 898a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 899899cda47SBarry Smith CHKMEMQ; 900a9d4b620SHong Zhang PetscFunctionReturn(0); 901a9d4b620SHong Zhang } 902a9d4b620SHong Zhang 903a9d4b620SHong Zhang #undef __FUNCT__ 90440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 905dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 906a30f8f8cSSatish Balay { 907a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 908dfbe8321SBarry Smith PetscErrorCode ierr; 9091302d50aSBarry Smith PetscInt nt; 910a30f8f8cSSatish Balay 911a30f8f8cSSatish Balay PetscFunctionBegin; 912a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 913899cda47SBarry Smith if (nt != A->cmap.n) { 91429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 915a30f8f8cSSatish Balay } 916a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 917899cda47SBarry Smith if (nt != A->rmap.N) { 91829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 919a30f8f8cSSatish Balay } 92065d70643SHong Zhang 921b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 922b941877fSHong Zhang /* do diagonal part */ 923b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 924b941877fSHong Zhang /* do supperdiagonal part */ 925b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 926b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 927b941877fSHong Zhang /* do subdiagonal part */ 928b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 929b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 930b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 93165d70643SHong Zhang 932a30f8f8cSSatish Balay PetscFunctionReturn(0); 933a30f8f8cSSatish Balay } 934a30f8f8cSSatish Balay 9354a2ae208SSatish Balay #undef __FUNCT__ 9364a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 937dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 938a30f8f8cSSatish Balay { 939de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 940dfbe8321SBarry Smith PetscErrorCode ierr; 941899cda47SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap.bs; 942a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 943a9d4b620SHong Zhang 944a9d4b620SHong Zhang PetscFunctionBegin; 945a9d4b620SHong Zhang /* 94656faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 94756faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 948a9d4b620SHong Zhang */ 949a9d4b620SHong Zhang /* diagonal part */ 950a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9512dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 952a9d4b620SHong Zhang 953a9d4b620SHong Zhang /* subdiagonal part */ 954a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 955a9d4b620SHong Zhang 956a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9571ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9581ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 959a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9601ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 961a9d4b620SHong Zhang 962a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9631ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 964a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 965a9d4b620SHong Zhang 966a9d4b620SHong Zhang /* supperdiagonal part */ 967a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 968a9d4b620SHong Zhang 969a9d4b620SHong Zhang PetscFunctionReturn(0); 970a9d4b620SHong Zhang } 971a9d4b620SHong Zhang 972a9d4b620SHong Zhang #undef __FUNCT__ 973a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 974dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 975a9d4b620SHong Zhang { 976a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 977dfbe8321SBarry Smith PetscErrorCode ierr; 978a30f8f8cSSatish Balay 979a30f8f8cSSatish Balay PetscFunctionBegin; 980b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 981b941877fSHong Zhang /* do diagonal part */ 982b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 983b941877fSHong Zhang /* do supperdiagonal part */ 984b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 985de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 986de8b6608SHong Zhang 987b941877fSHong Zhang /* do subdiagonal part */ 988a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 989a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 990a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 991aa482183SHong Zhang 992a30f8f8cSSatish Balay PetscFunctionReturn(0); 993a30f8f8cSSatish Balay } 994a30f8f8cSSatish Balay 995a30f8f8cSSatish Balay /* 996a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 997a30f8f8cSSatish Balay diagonal block 998a30f8f8cSSatish Balay */ 9994a2ae208SSatish Balay #undef __FUNCT__ 10004a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1001dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1002a30f8f8cSSatish Balay { 1003a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1004dfbe8321SBarry Smith PetscErrorCode ierr; 1005a30f8f8cSSatish Balay 1006a30f8f8cSSatish Balay PetscFunctionBegin; 1007899cda47SBarry Smith /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1008a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1009a30f8f8cSSatish Balay PetscFunctionReturn(0); 1010a30f8f8cSSatish Balay } 1011a30f8f8cSSatish Balay 10124a2ae208SSatish Balay #undef __FUNCT__ 10134a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1014f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1015a30f8f8cSSatish Balay { 1016a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1017dfbe8321SBarry Smith PetscErrorCode ierr; 1018a30f8f8cSSatish Balay 1019a30f8f8cSSatish Balay PetscFunctionBegin; 1020f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1021f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1022a30f8f8cSSatish Balay PetscFunctionReturn(0); 1023a30f8f8cSSatish Balay } 1024a30f8f8cSSatish Balay 10254a2ae208SSatish Balay #undef __FUNCT__ 10264a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10271302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1028a30f8f8cSSatish Balay { 1029d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1030d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1031d0d4cfc2SHong Zhang PetscErrorCode ierr; 1032899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1033899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1034899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1035d0d4cfc2SHong Zhang 1036a30f8f8cSSatish Balay PetscFunctionBegin; 1037d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1038d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1039d0d4cfc2SHong Zhang 1040d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1041d0d4cfc2SHong Zhang /* 1042d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1043d0d4cfc2SHong Zhang */ 1044d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1045d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1046d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1047d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1048d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1049d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1050d0d4cfc2SHong Zhang } 1051d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1052d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang 1055d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1056d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1057d0d4cfc2SHong Zhang 1058d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1059d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1060d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1061d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1062d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1063d0d4cfc2SHong Zhang nztot = nzA + nzB; 1064d0d4cfc2SHong Zhang 1065d0d4cfc2SHong Zhang cmap = mat->garray; 1066d0d4cfc2SHong Zhang if (v || idx) { 1067d0d4cfc2SHong Zhang if (nztot) { 1068d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1069d0d4cfc2SHong Zhang PetscInt imark = -1; 1070d0d4cfc2SHong Zhang if (v) { 1071d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1072d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1073d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1074d0d4cfc2SHong Zhang else break; 1075d0d4cfc2SHong Zhang } 1076d0d4cfc2SHong Zhang imark = i; 1077d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1078d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1079d0d4cfc2SHong Zhang } 1080d0d4cfc2SHong Zhang if (idx) { 1081d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1082d0d4cfc2SHong Zhang if (imark > -1) { 1083d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1084d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1085d0d4cfc2SHong Zhang } 1086d0d4cfc2SHong Zhang } else { 1087d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1088d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1089d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1090d0d4cfc2SHong Zhang else break; 1091d0d4cfc2SHong Zhang } 1092d0d4cfc2SHong Zhang imark = i; 1093d0d4cfc2SHong Zhang } 1094d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1095d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1096d0d4cfc2SHong Zhang } 1097d0d4cfc2SHong Zhang } else { 1098d0d4cfc2SHong Zhang if (idx) *idx = 0; 1099d0d4cfc2SHong Zhang if (v) *v = 0; 1100d0d4cfc2SHong Zhang } 1101d0d4cfc2SHong Zhang } 1102d0d4cfc2SHong Zhang *nz = nztot; 1103d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1104d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1105a30f8f8cSSatish Balay PetscFunctionReturn(0); 1106a30f8f8cSSatish Balay } 1107a30f8f8cSSatish Balay 11084a2ae208SSatish Balay #undef __FUNCT__ 11094a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11101302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1111a30f8f8cSSatish Balay { 1112a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1113a30f8f8cSSatish Balay 1114a30f8f8cSSatish Balay PetscFunctionBegin; 1115abc0a331SBarry Smith if (!baij->getrowactive) { 1116abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1117a30f8f8cSSatish Balay } 1118a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1119a30f8f8cSSatish Balay PetscFunctionReturn(0); 1120a30f8f8cSSatish Balay } 1121a30f8f8cSSatish Balay 11224a2ae208SSatish Balay #undef __FUNCT__ 1123d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1124d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1125d0d4cfc2SHong Zhang { 1126d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1127d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1128d0d4cfc2SHong Zhang 1129d0d4cfc2SHong Zhang PetscFunctionBegin; 1130d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1131d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1132d0d4cfc2SHong Zhang } 1133d0d4cfc2SHong Zhang #undef __FUNCT__ 1134d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1135d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1136d0d4cfc2SHong Zhang { 1137d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1138d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1139d0d4cfc2SHong Zhang 1140d0d4cfc2SHong Zhang PetscFunctionBegin; 1141d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1142d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1143d0d4cfc2SHong Zhang } 1144d0d4cfc2SHong Zhang 1145d0d4cfc2SHong Zhang #undef __FUNCT__ 114699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 114799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 114899cafbc1SBarry Smith { 114999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 115099cafbc1SBarry Smith PetscErrorCode ierr; 115199cafbc1SBarry Smith 115299cafbc1SBarry Smith PetscFunctionBegin; 115399cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 115499cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 115599cafbc1SBarry Smith PetscFunctionReturn(0); 115699cafbc1SBarry Smith } 115799cafbc1SBarry Smith 115899cafbc1SBarry Smith #undef __FUNCT__ 115999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 116099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 116199cafbc1SBarry Smith { 116299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 116399cafbc1SBarry Smith PetscErrorCode ierr; 116499cafbc1SBarry Smith 116599cafbc1SBarry Smith PetscFunctionBegin; 116699cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 116799cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 116899cafbc1SBarry Smith PetscFunctionReturn(0); 116999cafbc1SBarry Smith } 117099cafbc1SBarry Smith 117199cafbc1SBarry Smith #undef __FUNCT__ 11724a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1173dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1174a30f8f8cSSatish Balay { 1175a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1176dfbe8321SBarry Smith PetscErrorCode ierr; 1177a30f8f8cSSatish Balay 1178a30f8f8cSSatish Balay PetscFunctionBegin; 1179a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1180a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1181a30f8f8cSSatish Balay PetscFunctionReturn(0); 1182a30f8f8cSSatish Balay } 1183a30f8f8cSSatish Balay 11844a2ae208SSatish Balay #undef __FUNCT__ 11854a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1186dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1187a30f8f8cSSatish Balay { 1188a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1189a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1190dfbe8321SBarry Smith PetscErrorCode ierr; 1191a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1192a30f8f8cSSatish Balay 1193a30f8f8cSSatish Balay PetscFunctionBegin; 1194899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 1195a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1196a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1197a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1198a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1199a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1200a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1201a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1202a30f8f8cSSatish Balay info->nz_used = isend[0]; 1203a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1204a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1205a30f8f8cSSatish Balay info->memory = isend[3]; 1206a30f8f8cSSatish Balay info->mallocs = isend[4]; 1207a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1208d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1209a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1210a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1211a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1212a30f8f8cSSatish Balay info->memory = irecv[3]; 1213a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1214a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1215d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1216a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1217a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1218a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1219a30f8f8cSSatish Balay info->memory = irecv[3]; 1220a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1221a30f8f8cSSatish Balay } else { 122277431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1223a30f8f8cSSatish Balay } 1224899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1225899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1226899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1227899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 1228a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1229a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1230a30f8f8cSSatish Balay info->factor_mallocs = 0; 1231a30f8f8cSSatish Balay PetscFunctionReturn(0); 1232a30f8f8cSSatish Balay } 1233a30f8f8cSSatish Balay 12344a2ae208SSatish Balay #undef __FUNCT__ 12354a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1236dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1237a30f8f8cSSatish Balay { 1238a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1239d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1240dfbe8321SBarry Smith PetscErrorCode ierr; 1241a30f8f8cSSatish Balay 1242a30f8f8cSSatish Balay PetscFunctionBegin; 1243e98b92d7SKris Buschelman switch (op) { 1244e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1245e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1246e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1247e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1248e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1249e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1250e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1251a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1252a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1253e98b92d7SKris Buschelman break; 1254e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1255a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1256a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1257a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1258e98b92d7SKris Buschelman break; 1259e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1260e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1261e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1262*290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1263e98b92d7SKris Buschelman break; 1264e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1265a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1266a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1267a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1268e98b92d7SKris Buschelman break; 1269e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1270a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1271e98b92d7SKris Buschelman break; 1272e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 127329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1274e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1275a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1276e98b92d7SKris Buschelman break; 12779a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12789a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12799a4540c5SBarry Smith case MAT_HERMITIAN: 12809a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 128177e54ba9SKris Buschelman case MAT_SYMMETRIC: 128277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12839a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12849a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12859a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 1286*290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 128777e54ba9SKris Buschelman break; 1288d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 1289d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_TRUE; 1290d0d4cfc2SHong Zhang break; 1291d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 1292d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_FALSE; 1293d0d4cfc2SHong Zhang break; 1294d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 1295d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1296d0d4cfc2SHong Zhang break; 1297e98b92d7SKris Buschelman default: 1298ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1299a30f8f8cSSatish Balay } 1300a30f8f8cSSatish Balay PetscFunctionReturn(0); 1301a30f8f8cSSatish Balay } 1302a30f8f8cSSatish Balay 13034a2ae208SSatish Balay #undef __FUNCT__ 13048115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1305dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1306a30f8f8cSSatish Balay { 1307dfbe8321SBarry Smith PetscErrorCode ierr; 1308a30f8f8cSSatish Balay PetscFunctionBegin; 1309999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13108115998fSBarry Smith PetscFunctionReturn(0); 1311a30f8f8cSSatish Balay } 1312a30f8f8cSSatish Balay 13134a2ae208SSatish Balay #undef __FUNCT__ 13144a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1315dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1316a30f8f8cSSatish Balay { 1317a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1318a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1319dfbe8321SBarry Smith PetscErrorCode ierr; 13205e90f9d9SHong Zhang PetscInt nv,m,n; 1321b3bf805bSHong Zhang PetscTruth flg; 1322a30f8f8cSSatish Balay 1323a30f8f8cSSatish Balay PetscFunctionBegin; 1324a30f8f8cSSatish Balay if (ll != rr){ 1325b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1326b3bf805bSHong Zhang if (!flg) 132729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1328a30f8f8cSSatish Balay } 1329b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1330b3bf805bSHong Zhang 13315e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13325e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1333b3bf805bSHong Zhang 13345e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13355e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13365e90f9d9SHong Zhang 1337a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 13385e90f9d9SHong Zhang 13395e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1340a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13415e90f9d9SHong Zhang 13425e90f9d9SHong Zhang /* scale the diagonal part */ 1343a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1344a30f8f8cSSatish Balay 13455e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1346a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1347a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1348a30f8f8cSSatish Balay PetscFunctionReturn(0); 1349a30f8f8cSSatish Balay } 1350a30f8f8cSSatish Balay 13514a2ae208SSatish Balay #undef __FUNCT__ 13524a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1353dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1354a30f8f8cSSatish Balay { 1355f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1356dfbe8321SBarry Smith PetscErrorCode ierr; 1357a30f8f8cSSatish Balay 1358a30f8f8cSSatish Balay PetscFunctionBegin; 1359a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1360a30f8f8cSSatish Balay PetscFunctionReturn(0); 1361a30f8f8cSSatish Balay } 1362a30f8f8cSSatish Balay 13636849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1364a30f8f8cSSatish Balay 13654a2ae208SSatish Balay #undef __FUNCT__ 13664a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1367dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1368a30f8f8cSSatish Balay { 1369a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1370a30f8f8cSSatish Balay Mat a,b,c,d; 1371a30f8f8cSSatish Balay PetscTruth flg; 1372dfbe8321SBarry Smith PetscErrorCode ierr; 1373a30f8f8cSSatish Balay 1374a30f8f8cSSatish Balay PetscFunctionBegin; 1375a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1376a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1377a30f8f8cSSatish Balay 1378a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1379abc0a331SBarry Smith if (flg) { 1380a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1381a30f8f8cSSatish Balay } 1382a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1383a30f8f8cSSatish Balay PetscFunctionReturn(0); 1384a30f8f8cSSatish Balay } 1385a30f8f8cSSatish Balay 13864a2ae208SSatish Balay #undef __FUNCT__ 13873c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13883c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13893c896bc6SHong Zhang { 13903c896bc6SHong Zhang PetscErrorCode ierr; 13913c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13923c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13933c896bc6SHong Zhang 13943c896bc6SHong Zhang PetscFunctionBegin; 13953c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13963c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1397d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13983c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1399d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14003c896bc6SHong Zhang } else { 14013c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14023c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14033c896bc6SHong Zhang } 14043c896bc6SHong Zhang PetscFunctionReturn(0); 14053c896bc6SHong Zhang } 14063c896bc6SHong Zhang 14073c896bc6SHong Zhang #undef __FUNCT__ 14084a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1409dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1410273d9f13SBarry Smith { 1411dfbe8321SBarry Smith PetscErrorCode ierr; 1412273d9f13SBarry Smith 1413273d9f13SBarry Smith PetscFunctionBegin; 14147edd0491SSatish Balay ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1415273d9f13SBarry Smith PetscFunctionReturn(0); 1416273d9f13SBarry Smith } 1417a5e6ed63SBarry Smith 14184fe895cdSHong Zhang #include "petscblaslapack.h" 14194fe895cdSHong Zhang #undef __FUNCT__ 14204fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14214fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14224fe895cdSHong Zhang { 14234fe895cdSHong Zhang PetscErrorCode ierr; 14244fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14254fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14264fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14274fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14284fe895cdSHong Zhang 14294fe895cdSHong Zhang PetscFunctionBegin; 14304fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14314fe895cdSHong Zhang PetscScalar alpha = a; 14324fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14334fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14344fe895cdSHong Zhang bnz = (PetscBLASInt)xa->nz; 14354fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14364fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14374fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14384fe895cdSHong Zhang bnz = (PetscBLASInt)xb->nz; 14394fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14404fe895cdSHong Zhang } else { 1441d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14424fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1443d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14444fe895cdSHong Zhang } 14454fe895cdSHong Zhang PetscFunctionReturn(0); 14464fe895cdSHong Zhang } 14474fe895cdSHong Zhang 1448a5e6ed63SBarry Smith #undef __FUNCT__ 1449a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14501302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1451a5e6ed63SBarry Smith { 14526849ba73SBarry Smith PetscErrorCode ierr; 14531302d50aSBarry Smith PetscInt i; 1454a5e6ed63SBarry Smith PetscTruth flg; 1455a5e6ed63SBarry Smith 14566849ba73SBarry Smith PetscFunctionBegin; 1457a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1458a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1459a5e6ed63SBarry Smith if (!flg) { 14601302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1461a5e6ed63SBarry Smith } 1462a5e6ed63SBarry Smith } 1463a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1464a5e6ed63SBarry Smith PetscFunctionReturn(0); 1465a5e6ed63SBarry Smith } 1466a5e6ed63SBarry Smith 1467a5e6ed63SBarry Smith 1468a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1469a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1470a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1471a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1472a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1473a9d4b620SHong Zhang MatMult_MPISBAIJ, 147497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1475431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1476431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 148097304618SKris Buschelman /*10*/ 0, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 14832798e883SHong Zhang MatRelax_MPISBAIJ, 1484a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 148597304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1486a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1487a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1488a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1489a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 149097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1491a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1492a30f8f8cSSatish Balay 0, 1493a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1494a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1495dcf5cc72SBarry Smith /*25*/ 0, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 150097304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1501b5df2d14SHong Zhang 0, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 150597304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay 0, 15104fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1511a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1512d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1513a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15143c896bc6SHong Zhang MatCopy_MPISBAIJ, 15158c07d4e3SBarry Smith /*45*/ 0, 1516a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1517a30f8f8cSSatish Balay 0, 1518a30f8f8cSSatish Balay 0, 1519a30f8f8cSSatish Balay 0, 1520521d7252SBarry Smith /*50*/ 0, 1521a30f8f8cSSatish Balay 0, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 152597304618SKris Buschelman /*55*/ 0, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 153097304618SKris Buschelman /*60*/ 0, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 1533357abbc8SBarry Smith 0, 153424d5174aSHong Zhang 0, 153597304618SKris Buschelman /*65*/ 0, 153624d5174aSHong Zhang 0, 153724d5174aSHong Zhang 0, 153824d5174aSHong Zhang 0, 153924d5174aSHong Zhang 0, 154097304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 154124d5174aSHong Zhang 0, 154297304618SKris Buschelman 0, 154397304618SKris Buschelman 0, 154497304618SKris Buschelman 0, 154597304618SKris Buschelman /*75*/ 0, 154697304618SKris Buschelman 0, 154797304618SKris Buschelman 0, 154897304618SKris Buschelman 0, 154997304618SKris Buschelman 0, 155097304618SKris Buschelman /*80*/ 0, 155197304618SKris Buschelman 0, 155297304618SKris Buschelman 0, 155397304618SKris Buschelman 0, 1554865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1555865e5f61SKris Buschelman /*85*/ 0, 1556865e5f61SKris Buschelman 0, 1557865e5f61SKris Buschelman 0, 1558865e5f61SKris Buschelman 0, 1559865e5f61SKris Buschelman 0, 1560865e5f61SKris Buschelman /*90*/ 0, 1561865e5f61SKris Buschelman 0, 1562865e5f61SKris Buschelman 0, 1563865e5f61SKris Buschelman 0, 1564865e5f61SKris Buschelman 0, 1565865e5f61SKris Buschelman /*95*/ 0, 1566865e5f61SKris Buschelman 0, 1567865e5f61SKris Buschelman 0, 156899cafbc1SBarry Smith 0, 156999cafbc1SBarry Smith 0, 157099cafbc1SBarry Smith /*100*/0, 157199cafbc1SBarry Smith 0, 157299cafbc1SBarry Smith 0, 157399cafbc1SBarry Smith 0, 157499cafbc1SBarry Smith 0, 157599cafbc1SBarry Smith /*105*/0, 157699cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1577d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1578d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1579d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 158099cafbc1SBarry Smith }; 1581a30f8f8cSSatish Balay 1582a30f8f8cSSatish Balay 1583a30f8f8cSSatish Balay EXTERN_C_BEGIN 15844a2ae208SSatish Balay #undef __FUNCT__ 15854a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1586be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1587a30f8f8cSSatish Balay { 1588a30f8f8cSSatish Balay PetscFunctionBegin; 1589a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1590a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1591a30f8f8cSSatish Balay PetscFunctionReturn(0); 1592a30f8f8cSSatish Balay } 1593a30f8f8cSSatish Balay EXTERN_C_END 1594a30f8f8cSSatish Balay 1595273d9f13SBarry Smith EXTERN_C_BEGIN 15964a2ae208SSatish Balay #undef __FUNCT__ 1597a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1598be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1599a23d5eceSKris Buschelman { 1600a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1601dfbe8321SBarry Smith PetscErrorCode ierr; 16021302d50aSBarry Smith PetscInt i,mbs,Mbs; 1603a23d5eceSKris Buschelman 1604a23d5eceSKris Buschelman PetscFunctionBegin; 16058c07d4e3SBarry Smith ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 16068c07d4e3SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 16078c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1608a23d5eceSKris Buschelman 1609a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1610a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1611a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 161277431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 161377431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1614899cda47SBarry Smith 1615899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 1616899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr); 1617899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr); 1618899cda47SBarry Smith 1619a23d5eceSKris Buschelman if (d_nnz) { 1620899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 162177431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1622a23d5eceSKris Buschelman } 1623a23d5eceSKris Buschelman } 1624a23d5eceSKris Buschelman if (o_nnz) { 1625899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 162677431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1627a23d5eceSKris Buschelman } 1628a23d5eceSKris Buschelman } 1629a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1630a23d5eceSKris Buschelman 1631a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1632899cda47SBarry Smith mbs = B->rmap.n/bs; 1633899cda47SBarry Smith Mbs = B->rmap.N/bs; 1634899cda47SBarry Smith if (mbs*bs != B->rmap.n) { 1635899cda47SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs); 1636a23d5eceSKris Buschelman } 1637a23d5eceSKris Buschelman 1638899cda47SBarry Smith B->rmap.bs = bs; 1639a23d5eceSKris Buschelman b->bs2 = bs*bs; 1640a23d5eceSKris Buschelman b->mbs = mbs; 1641a23d5eceSKris Buschelman b->nbs = mbs; 1642a23d5eceSKris Buschelman b->Mbs = Mbs; 1643a23d5eceSKris Buschelman b->Nbs = Mbs; 1644a23d5eceSKris Buschelman 1645a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1646899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 1647a23d5eceSKris Buschelman } 1648899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 1649899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 1650a23d5eceSKris Buschelman 1651899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 1652899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 1653a23d5eceSKris Buschelman 1654f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1655899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 16569c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1657c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 165852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16599c097c71SKris Buschelman 1660f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1661899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 16624aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1663589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 166452e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1665a23d5eceSKris Buschelman 1666a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1667a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1668a23d5eceSKris Buschelman 1669a23d5eceSKris Buschelman PetscFunctionReturn(0); 1670a23d5eceSKris Buschelman } 1671a23d5eceSKris Buschelman EXTERN_C_END 1672a23d5eceSKris Buschelman 16730bad9183SKris Buschelman /*MC 1674fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16750bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16760bad9183SKris Buschelman 16770bad9183SKris Buschelman Options Database Keys: 16780bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16790bad9183SKris Buschelman 16800bad9183SKris Buschelman Level: beginner 16810bad9183SKris Buschelman 16820bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16830bad9183SKris Buschelman M*/ 16840bad9183SKris Buschelman 1685a23d5eceSKris Buschelman EXTERN_C_BEGIN 1686a23d5eceSKris Buschelman #undef __FUNCT__ 16874a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1688be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1689b5df2d14SHong Zhang { 1690b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1691dfbe8321SBarry Smith PetscErrorCode ierr; 1692b5df2d14SHong Zhang PetscTruth flg; 1693b5df2d14SHong Zhang 1694b5df2d14SHong Zhang PetscFunctionBegin; 1695b5df2d14SHong Zhang 1696b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1697b0a32e0cSBarry Smith B->data = (void*)b; 1698b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1699b5df2d14SHong Zhang 1700b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1701b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1702b5df2d14SHong Zhang B->mapping = 0; 1703b5df2d14SHong Zhang B->factor = 0; 1704b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1705b5df2d14SHong Zhang 1706b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1707b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1708b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1709b5df2d14SHong Zhang 1710b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1711899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1712b5df2d14SHong Zhang 1713b5df2d14SHong Zhang /* build cache for off array entries formed */ 1714b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1715b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1716b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1717b5df2d14SHong Zhang b->garray = PETSC_NULL; 1718b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1719b5df2d14SHong Zhang 1720f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1721b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 172264a35ccbSBarry Smith b->setvalueslen = 0; 1723b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1724b5df2d14SHong Zhang #endif 1725b5df2d14SHong Zhang 1726b5df2d14SHong Zhang /* stuff used in block assembly */ 1727b5df2d14SHong Zhang b->barray = 0; 1728b5df2d14SHong Zhang 1729b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1730b5df2d14SHong Zhang b->lvec = 0; 1731b5df2d14SHong Zhang b->Mvctx = 0; 173240781036SHong Zhang b->slvec0 = 0; 173340781036SHong Zhang b->slvec0b = 0; 173440781036SHong Zhang b->slvec1 = 0; 173540781036SHong Zhang b->slvec1a = 0; 173640781036SHong Zhang b->slvec1b = 0; 173740781036SHong Zhang b->sMvctx = 0; 1738b5df2d14SHong Zhang 1739b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1740b5df2d14SHong Zhang b->rowindices = 0; 1741b5df2d14SHong Zhang b->rowvalues = 0; 1742b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1743b5df2d14SHong Zhang 1744b5df2d14SHong Zhang /* hash table stuff */ 1745b5df2d14SHong Zhang b->ht = 0; 1746b5df2d14SHong Zhang b->hd = 0; 1747b5df2d14SHong Zhang b->ht_size = 0; 1748b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1749b5df2d14SHong Zhang b->ht_fact = 0; 1750b5df2d14SHong Zhang b->ht_total_ct = 0; 1751b5df2d14SHong Zhang b->ht_insert_ct = 0; 1752b5df2d14SHong Zhang 175359ffdab8SBarry Smith b->in_loc = 0; 175459ffdab8SBarry Smith b->v_loc = 0; 175559ffdab8SBarry Smith b->n_loc = 0; 17568c07d4e3SBarry Smith ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix","Mat");CHKERRQ(ierr); 17578c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1758b5df2d14SHong Zhang if (flg) { 1759f6275e2eSBarry Smith PetscReal fact = 1.39; 1760b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 17618c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1762b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1763b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1764ae15b995SBarry Smith ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1765b5df2d14SHong Zhang } 17668c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17678c07d4e3SBarry Smith 1768b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1769b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1770b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1771b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1772b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1773b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1774b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1775b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1776b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1777a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1778a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1779a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 178023ce1328SBarry Smith B->symmetric = PETSC_TRUE; 178123ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 178223ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 178323ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 178417667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1785b5df2d14SHong Zhang PetscFunctionReturn(0); 1786b5df2d14SHong Zhang } 1787273d9f13SBarry Smith EXTERN_C_END 1788b5df2d14SHong Zhang 1789209238afSKris Buschelman /*MC 1790002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1791209238afSKris Buschelman 1792209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1793209238afSKris Buschelman and MATMPISBAIJ otherwise. 1794209238afSKris Buschelman 1795209238afSKris Buschelman Options Database Keys: 1796209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1797209238afSKris Buschelman 1798209238afSKris Buschelman Level: beginner 1799209238afSKris Buschelman 1800209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1801209238afSKris Buschelman M*/ 1802209238afSKris Buschelman 1803209238afSKris Buschelman EXTERN_C_BEGIN 1804209238afSKris Buschelman #undef __FUNCT__ 1805209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1806be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1807dfbe8321SBarry Smith { 18086849ba73SBarry Smith PetscErrorCode ierr; 18091302d50aSBarry Smith PetscMPIInt size; 1810209238afSKris Buschelman 1811209238afSKris Buschelman PetscFunctionBegin; 1812209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1813209238afSKris Buschelman if (size == 1) { 1814209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1815209238afSKris Buschelman } else { 1816209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1817209238afSKris Buschelman } 1818209238afSKris Buschelman PetscFunctionReturn(0); 1819209238afSKris Buschelman } 1820209238afSKris Buschelman EXTERN_C_END 1821209238afSKris Buschelman 18224a2ae208SSatish Balay #undef __FUNCT__ 18234a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1824b5df2d14SHong Zhang /*@C 1825b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1826b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1827b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1828b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang Collective on Mat 1831b5df2d14SHong Zhang 1832b5df2d14SHong Zhang Input Parameters: 1833b5df2d14SHong Zhang + A - the matrix 1834b5df2d14SHong Zhang . bs - size of blockk 1835b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1836b5df2d14SHong Zhang submatrix (same for all local rows) 1837b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18386d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18396d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18406d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1841b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1842b5df2d14SHong Zhang submatrix (same for all local rows). 1843b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1844b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1845b5df2d14SHong Zhang each block row) or PETSC_NULL. 1846b5df2d14SHong Zhang 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang Options Database Keys: 1849b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1850b5df2d14SHong Zhang block calculations (much slower) 1851b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1852b5df2d14SHong Zhang 1853b5df2d14SHong Zhang Notes: 1854b5df2d14SHong Zhang 1855b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1856b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1857b5df2d14SHong Zhang 185849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 185949a6f317SBarry Smith 1860b5df2d14SHong Zhang Storage Information: 1861b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1862b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1863b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1864b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1865b5df2d14SHong Zhang 1866b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1867b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1868b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1869b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1870b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1871b5df2d14SHong Zhang 1872b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1873b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1874b5df2d14SHong Zhang 1875b5df2d14SHong Zhang .vb 1876b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1877b5df2d14SHong Zhang ------------------- 1878b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1879b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1880b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1881b5df2d14SHong Zhang ------------------- 1882b5df2d14SHong Zhang .ve 1883b5df2d14SHong Zhang 1884b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1885b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18866d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18876d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1888b5df2d14SHong Zhang 18896d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18906d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1891b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1892b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1893b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1894b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1895b5df2d14SHong Zhang matrices. 1896b5df2d14SHong Zhang 1897b5df2d14SHong Zhang Level: intermediate 1898b5df2d14SHong Zhang 1899b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1900b5df2d14SHong Zhang 1901b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1902b5df2d14SHong Zhang @*/ 1903be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1904b5df2d14SHong Zhang { 19051302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1906b5df2d14SHong Zhang 1907b5df2d14SHong Zhang PetscFunctionBegin; 1908a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1909a23d5eceSKris Buschelman if (f) { 1910a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1911b5df2d14SHong Zhang } 1912b5df2d14SHong Zhang PetscFunctionReturn(0); 1913b5df2d14SHong Zhang } 1914b5df2d14SHong Zhang 19154a2ae208SSatish Balay #undef __FUNCT__ 19164a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1917a30f8f8cSSatish Balay /*@C 1918a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1919a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1920a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1921a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1922a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1923a30f8f8cSSatish Balay 1924a30f8f8cSSatish Balay Collective on MPI_Comm 1925a30f8f8cSSatish Balay 1926a30f8f8cSSatish Balay Input Parameters: 1927a30f8f8cSSatish Balay + comm - MPI communicator 1928a30f8f8cSSatish Balay . bs - size of blockk 1929a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1930a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1931a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1932a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1933a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1934a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1935a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1936a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1937a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1938a30f8f8cSSatish Balay submatrix (same for all local rows) 1939a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19406d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19416d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19426d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1943a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1944a30f8f8cSSatish Balay submatrix (same for all local rows). 1945a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1946a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1947a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1948a30f8f8cSSatish Balay 1949a30f8f8cSSatish Balay Output Parameter: 1950a30f8f8cSSatish Balay . A - the matrix 1951a30f8f8cSSatish Balay 1952a30f8f8cSSatish Balay Options Database Keys: 1953a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1954a30f8f8cSSatish Balay block calculations (much slower) 1955a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1956a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1957a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1958a30f8f8cSSatish Balay 1959a30f8f8cSSatish Balay Notes: 1960d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1961d1be2dadSMatthew Knepley 1962a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1963a30f8f8cSSatish Balay (possibly both). 1964a30f8f8cSSatish Balay 1965a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1966a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1967a30f8f8cSSatish Balay 196849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 196949a6f317SBarry Smith 1970a30f8f8cSSatish Balay Storage Information: 1971a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1972a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1973a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1974a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1975a30f8f8cSSatish Balay 1976a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1977a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1978a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1979a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1980a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1981a30f8f8cSSatish Balay 1982a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1983a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1984a30f8f8cSSatish Balay 1985a30f8f8cSSatish Balay .vb 1986a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1987a30f8f8cSSatish Balay ------------------- 1988a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1989a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1990a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1991a30f8f8cSSatish Balay ------------------- 1992a30f8f8cSSatish Balay .ve 1993a30f8f8cSSatish Balay 1994a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1995a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19966d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19976d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1998a30f8f8cSSatish Balay 19996d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20006d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2001a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2002a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2003a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2004a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2005a30f8f8cSSatish Balay matrices. 2006a30f8f8cSSatish Balay 2007a30f8f8cSSatish Balay Level: intermediate 2008a30f8f8cSSatish Balay 2009a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2010a30f8f8cSSatish Balay 2011a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2012a30f8f8cSSatish Balay @*/ 2013a30f8f8cSSatish Balay 2014be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2015a30f8f8cSSatish Balay { 20166849ba73SBarry Smith PetscErrorCode ierr; 20171302d50aSBarry Smith PetscMPIInt size; 2018a30f8f8cSSatish Balay 2019a30f8f8cSSatish Balay PetscFunctionBegin; 2020f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2021f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2022273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2023273d9f13SBarry Smith if (size > 1) { 2024b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2025b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2026273d9f13SBarry Smith } else { 2027273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2028273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2029273d9f13SBarry Smith } 2030a30f8f8cSSatish Balay PetscFunctionReturn(0); 2031a30f8f8cSSatish Balay } 2032a30f8f8cSSatish Balay 2033a30f8f8cSSatish Balay 20344a2ae208SSatish Balay #undef __FUNCT__ 20354a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20366849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2037a30f8f8cSSatish Balay { 2038a30f8f8cSSatish Balay Mat mat; 2039a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2040dfbe8321SBarry Smith PetscErrorCode ierr; 2041899cda47SBarry Smith PetscInt len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs; 2042387bc808SHong Zhang PetscScalar *array; 2043a30f8f8cSSatish Balay 2044a30f8f8cSSatish Balay PetscFunctionBegin; 2045a30f8f8cSSatish Balay *newmat = 0; 2046f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2047899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 2048be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20491d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2050899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 2051899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2052e1b6402fSHong Zhang 205382327fa8SHong Zhang mat->factor = matin->factor; 2054273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 205582327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20567fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20577fff6886SHong Zhang 2058b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2059a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2060a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2061a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2062a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2063a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2064a30f8f8cSSatish Balay 2065899cda47SBarry Smith 2066a30f8f8cSSatish Balay a->size = oldmat->size; 2067a30f8f8cSSatish Balay a->rank = oldmat->rank; 2068a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2069a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2070a30f8f8cSSatish Balay a->rowindices = 0; 2071a30f8f8cSSatish Balay a->rowvalues = 0; 2072a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2073a30f8f8cSSatish Balay a->barray = 0; 2074899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2075899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2076899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2077899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2078a30f8f8cSSatish Balay 2079a30f8f8cSSatish Balay /* hash table stuff */ 2080a30f8f8cSSatish Balay a->ht = 0; 2081a30f8f8cSSatish Balay a->hd = 0; 2082a30f8f8cSSatish Balay a->ht_size = 0; 2083a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2084a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2085a30f8f8cSSatish Balay a->ht_total_ct = 0; 2086a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2087a30f8f8cSSatish Balay 2088899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2089a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2090899cda47SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 2091a30f8f8cSSatish Balay if (oldmat->colmap) { 2092a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2093a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2094a30f8f8cSSatish Balay #else 20951302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 209652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20971302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2098a30f8f8cSSatish Balay #endif 2099a30f8f8cSSatish Balay } else a->colmap = 0; 2100387bc808SHong Zhang 2101a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21021302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 210352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21041302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2105a30f8f8cSSatish Balay } else a->garray = 0; 2106a30f8f8cSSatish Balay 2107a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 210852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2109a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 211052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 211182327fa8SHong Zhang 211282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 211352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 211482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 211552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2116387bc808SHong Zhang 2117387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21181ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2119387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2120387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21211ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21221ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2123387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21241ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 212552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 212752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 212852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 212952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2130387bc808SHong Zhang 2131387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2132387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2133387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 213452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 213582327fa8SHong Zhang 2136a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 213752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2138a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 213952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2140b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2141a30f8f8cSSatish Balay *newmat = mat; 2142a30f8f8cSSatish Balay PetscFunctionReturn(0); 2143a30f8f8cSSatish Balay } 2144a30f8f8cSSatish Balay 2145a30f8f8cSSatish Balay #include "petscsys.h" 2146a30f8f8cSSatish Balay 21474a2ae208SSatish Balay #undef __FUNCT__ 21484a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2149f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2150a30f8f8cSSatish Balay { 2151a30f8f8cSSatish Balay Mat A; 21526849ba73SBarry Smith PetscErrorCode ierr; 215313f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 215487828ca2SBarry Smith PetscScalar *vals,*buf; 2155a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2156a30f8f8cSSatish Balay MPI_Status status; 21572fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 215813f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21592fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21601302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21611302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21621302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 216313f74950SBarry Smith int fd; 2164a30f8f8cSSatish Balay 2165a30f8f8cSSatish Balay PetscFunctionBegin; 21668c07d4e3SBarry Smith ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix","Mat");CHKERRQ(ierr); 21678c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21688c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2169a30f8f8cSSatish Balay 2170a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2171a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay if (!rank) { 2173b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2174a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2175552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2176a30f8f8cSSatish Balay if (header[3] < 0) { 217729bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2178a30f8f8cSSatish Balay } 2179a30f8f8cSSatish Balay } 2180a30f8f8cSSatish Balay 2181a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2183a30f8f8cSSatish Balay 218429bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2185a30f8f8cSSatish Balay 2186a30f8f8cSSatish Balay /* 2187a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2188a30f8f8cSSatish Balay divisible by the blocksize 2189a30f8f8cSSatish Balay */ 2190a30f8f8cSSatish Balay Mbs = M/bs; 2191a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2192a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2193a30f8f8cSSatish Balay else Mbs++; 2194a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2195ae15b995SBarry Smith ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2196a30f8f8cSSatish Balay } 2197a30f8f8cSSatish Balay 2198a30f8f8cSSatish Balay /* determine ownership of all rows */ 2199a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2200a30f8f8cSSatish Balay m = mbs*bs; 2201a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2202a30f8f8cSSatish Balay browners = rowners + size + 1; 2203a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2204a30f8f8cSSatish Balay rowners[0] = 0; 2205a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2206a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2207a30f8f8cSSatish Balay rstart = rowners[rank]; 2208a30f8f8cSSatish Balay rend = rowners[rank+1]; 2209a30f8f8cSSatish Balay 2210a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22112fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay if (!rank) { 22131302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2214a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2216a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2217a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2218a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2219a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay } else { 2221a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay } 2223a30f8f8cSSatish Balay 22240222edb1SHong Zhang if (!rank) { /* procs[0] */ 2225a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22261302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22271302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2228a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2229a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2230a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2231a30f8f8cSSatish Balay } 2232a30f8f8cSSatish Balay } 2233a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2234a30f8f8cSSatish Balay 2235a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2236a30f8f8cSSatish Balay maxnz = 0; 2237a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2238a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2239a30f8f8cSSatish Balay } 22401302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2241a30f8f8cSSatish Balay 2242a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2243a30f8f8cSSatish Balay nz = procsnz[0]; 22441302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2245a30f8f8cSSatish Balay mycols = ibuf; 2246a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2247a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2248a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2249a30f8f8cSSatish Balay 2250a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2251a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2252a30f8f8cSSatish Balay nz = procsnz[i]; 2253a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2254a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2255a30f8f8cSSatish Balay } 2256a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2257a30f8f8cSSatish Balay if (size != 1) { 2258a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2259a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2260a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2261a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2262a30f8f8cSSatish Balay } 2263a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22640222edb1SHong Zhang } else { /* procs[i], i>0 */ 2265a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2266a30f8f8cSSatish Balay nz = 0; 2267a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2268a30f8f8cSSatish Balay nz += locrowlens[i]; 2269a30f8f8cSSatish Balay } 22701302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2271a30f8f8cSSatish Balay mycols = ibuf; 2272a30f8f8cSSatish Balay /* receive message of column indices*/ 2273a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2274a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 227529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2276a30f8f8cSSatish Balay } 2277a30f8f8cSSatish Balay 2278a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22791302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2280a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22811302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22821302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2283a30f8f8cSSatish Balay masked1 = mask + Mbs; 2284a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2285a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2286a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2287a30f8f8cSSatish Balay dcount = 0; 2288a30f8f8cSSatish Balay odcount = 0; 2289a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2290a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2291a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22920222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2293a30f8f8cSSatish Balay if (!mask[tmp]) { 2294a30f8f8cSSatish Balay mask[tmp] = 1; 22950222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22960222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2297a30f8f8cSSatish Balay } 2298a30f8f8cSSatish Balay } 2299a30f8f8cSSatish Balay rowcount++; 2300a30f8f8cSSatish Balay } 2301a30f8f8cSSatish Balay 23020222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23030222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2304a30f8f8cSSatish Balay 2305a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2306a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2307a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2308a30f8f8cSSatish Balay } 2309a30f8f8cSSatish Balay 2310a30f8f8cSSatish Balay /* create our matrix */ 2311f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2312f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 231322191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 231422191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2315273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2316a30f8f8cSSatish Balay 2317a30f8f8cSSatish Balay if (!rank) { 231887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2319a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2320a30f8f8cSSatish Balay nz = procsnz[0]; 2321a30f8f8cSSatish Balay vals = buf; 2322a30f8f8cSSatish Balay mycols = ibuf; 2323a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2324a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2325a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2326a30f8f8cSSatish Balay 2327a30f8f8cSSatish Balay /* insert into matrix */ 2328a30f8f8cSSatish Balay jj = rstart*bs; 2329a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23307e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2331a30f8f8cSSatish Balay mycols += locrowlens[i]; 2332a30f8f8cSSatish Balay vals += locrowlens[i]; 2333a30f8f8cSSatish Balay jj++; 2334a30f8f8cSSatish Balay } 23357e06b45fSHong Zhang 2336a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2337a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2338a30f8f8cSSatish Balay nz = procsnz[i]; 2339a30f8f8cSSatish Balay vals = buf; 2340a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2341a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2342a30f8f8cSSatish Balay } 2343a30f8f8cSSatish Balay /* the last proc */ 2344a30f8f8cSSatish Balay if (size != 1){ 2345a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2346a30f8f8cSSatish Balay vals = buf; 2347a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2348a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2349a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2350a30f8f8cSSatish Balay } 2351a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23527e06b45fSHong Zhang 2353a30f8f8cSSatish Balay } else { 2354a30f8f8cSSatish Balay /* receive numeric values */ 235587828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2356a30f8f8cSSatish Balay 2357a30f8f8cSSatish Balay /* receive message of values*/ 2358a30f8f8cSSatish Balay vals = buf; 2359a30f8f8cSSatish Balay mycols = ibuf; 2360a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2361a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 236229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2363a30f8f8cSSatish Balay 2364a30f8f8cSSatish Balay /* insert into matrix */ 2365a30f8f8cSSatish Balay jj = rstart*bs; 2366a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2367a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2368a30f8f8cSSatish Balay mycols += locrowlens[i]; 2369a30f8f8cSSatish Balay vals += locrowlens[i]; 2370a30f8f8cSSatish Balay jj++; 2371a30f8f8cSSatish Balay } 2372a30f8f8cSSatish Balay } 23737e06b45fSHong Zhang 2374a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2375a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2376a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2377a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2378a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2379a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2380a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2381a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238222191285SKris Buschelman *newmat = A; 2383a30f8f8cSSatish Balay PetscFunctionReturn(0); 2384a30f8f8cSSatish Balay } 2385a30f8f8cSSatish Balay 23864a2ae208SSatish Balay #undef __FUNCT__ 23874a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2388dcf5cc72SBarry Smith /*XXXXX@ 2389a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2390a30f8f8cSSatish Balay 2391a30f8f8cSSatish Balay Input Parameters: 2392a30f8f8cSSatish Balay . mat - the matrix 2393a30f8f8cSSatish Balay . fact - factor 2394a30f8f8cSSatish Balay 2395a30f8f8cSSatish Balay Collective on Mat 2396a30f8f8cSSatish Balay 2397a30f8f8cSSatish Balay Level: advanced 2398a30f8f8cSSatish Balay 2399a30f8f8cSSatish Balay Notes: 2400a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2401a30f8f8cSSatish Balay 2402a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2403a30f8f8cSSatish Balay 2404a30f8f8cSSatish Balay .seealso: MatSetOption() 2405dcf5cc72SBarry Smith @XXXXX*/ 2406dcf5cc72SBarry Smith 240724d5174aSHong Zhang 24084a2ae208SSatish Balay #undef __FUNCT__ 24094a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2410dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 241124d5174aSHong Zhang { 241224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2413f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2414ca54ac64SHong Zhang PetscReal atmp; 241587828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2416dfbe8321SBarry Smith PetscErrorCode ierr; 24171302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24181302d50aSBarry Smith PetscMPIInt rank,size; 24191302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 242087828ca2SBarry Smith PetscScalar *va; 24218a1c53f2SBarry Smith MatScalar *ba; 2422f4c0e9e4SHong Zhang MPI_Status stat; 242324d5174aSHong Zhang 242424d5174aSHong Zhang PetscFunctionBegin; 2425d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24261ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2427f4c0e9e4SHong Zhang 242856faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 242956faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2430f4c0e9e4SHong Zhang 2431899cda47SBarry Smith bs = A->rmap.bs; 2432f4c0e9e4SHong Zhang mbs = a->mbs; 2433f4c0e9e4SHong Zhang Mbs = a->Mbs; 2434f4c0e9e4SHong Zhang ba = b->a; 2435f4c0e9e4SHong Zhang bi = b->i; 2436f4c0e9e4SHong Zhang bj = b->j; 2437f4c0e9e4SHong Zhang 2438f4c0e9e4SHong Zhang /* find ownerships */ 2439899cda47SBarry Smith rowners_bs = A->rmap.range; 2440f4c0e9e4SHong Zhang 2441f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 244282502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2443ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2444f4c0e9e4SHong Zhang 2445f4c0e9e4SHong Zhang /* row_max for B */ 2446b8475685SHong Zhang if (rank != size-1){ 2447f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2448f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2449f4c0e9e4SHong Zhang brow = bs*i; 2450f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2451f4c0e9e4SHong Zhang bcol = bs*(*bj); 2452f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2453ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 245404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2455f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2456f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2457ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2458ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2459f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2460f4c0e9e4SHong Zhang } 2461f4c0e9e4SHong Zhang } 2462f4c0e9e4SHong Zhang bj++; 2463f4c0e9e4SHong Zhang } 2464f4c0e9e4SHong Zhang } 2465f4c0e9e4SHong Zhang 2466f4c0e9e4SHong Zhang /* send values to its owners */ 2467f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2468f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2469ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 247056faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2471ca54ac64SHong Zhang } 2472f4c0e9e4SHong Zhang } 2473f4c0e9e4SHong Zhang 2474f4c0e9e4SHong Zhang /* receive values */ 2475ca54ac64SHong Zhang if (rank){ 2476f4c0e9e4SHong Zhang rvalues = work; 2477ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2478f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 247956faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2480f4c0e9e4SHong Zhang /* process values */ 2481f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2482ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2483f4c0e9e4SHong Zhang } 2484f4c0e9e4SHong Zhang } 2485ca54ac64SHong Zhang } 2486f4c0e9e4SHong Zhang 24871ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2488ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 248924d5174aSHong Zhang PetscFunctionReturn(0); 249024d5174aSHong Zhang } 24912798e883SHong Zhang 24922798e883SHong Zhang #undef __FUNCT__ 24932798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24941302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24952798e883SHong Zhang { 24962798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2497dfbe8321SBarry Smith PetscErrorCode ierr; 2498899cda47SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap.bs; 2499efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2500ffe4fb16SHong Zhang Vec bb1; 2501ffe4fb16SHong Zhang 2502ffe4fb16SHong Zhang PetscFunctionBegin; 250377431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2504ffe4fb16SHong Zhang if (bs > 1) 2505ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2506ffe4fb16SHong Zhang 2507ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2508ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2509ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2510ffe4fb16SHong Zhang its--; 2511ffe4fb16SHong Zhang } 2512ffe4fb16SHong Zhang 2513ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2514ffe4fb16SHong Zhang while (its--){ 2515ffe4fb16SHong Zhang 2516ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2517ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2518ffe4fb16SHong Zhang 2519ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25201ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25211ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2522ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25231ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2524ffe4fb16SHong Zhang 2525efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2526ffe4fb16SHong Zhang 2527ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25281ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25291ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2530ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25311ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2532ffe4fb16SHong Zhang 2533ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25342dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang 2536ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25371ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25381ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2539ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2540ffe4fb16SHong Zhang 2541ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2542ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2543ffe4fb16SHong Zhang 2544ffe4fb16SHong Zhang /* local diagonal sweep */ 2545ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2546ffe4fb16SHong Zhang } 2547ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2548ffe4fb16SHong Zhang } else { 2549ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2550ffe4fb16SHong Zhang } 2551ffe4fb16SHong Zhang PetscFunctionReturn(0); 2552ffe4fb16SHong Zhang } 2553ffe4fb16SHong Zhang 2554ffe4fb16SHong Zhang #undef __FUNCT__ 2555ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25561302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2557ffe4fb16SHong Zhang { 2558ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2559dfbe8321SBarry Smith PetscErrorCode ierr; 25602798e883SHong Zhang Vec lvec1,bb1; 25612798e883SHong Zhang 25622798e883SHong Zhang PetscFunctionBegin; 256377431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2564899cda47SBarry Smith if (matin->rmap.bs > 1) 25652798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25662798e883SHong Zhang 2567c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25682798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2569bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25702798e883SHong Zhang its--; 25712798e883SHong Zhang } 25722798e883SHong Zhang 25732798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25742798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25752798e883SHong Zhang while (its--){ 25762798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25772798e883SHong Zhang 25782798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25792798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2580efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25812798e883SHong Zhang 25822798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25832798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25842798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25852798e883SHong Zhang 25862798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2587efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25882798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25892798e883SHong Zhang 25902798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25912798e883SHong Zhang 2592c14dc6b6SHong Zhang /* diagonal sweep */ 2593bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25942798e883SHong Zhang } 25952798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25962798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2597c14dc6b6SHong Zhang } else { 2598c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2599c14dc6b6SHong Zhang } 26002798e883SHong Zhang PetscFunctionReturn(0); 26012798e883SHong Zhang } 26022798e883SHong Zhang 2603