1*29bbc08cSBarry Smith /*$Id: mpisbaij.c,v 1.23 2000/09/27 21:14:30 balay Exp bsmith $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 11a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 12a30f8f8cSSatish Balay extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *); 13a30f8f8cSSatish Balay extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 14a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 15a30f8f8cSSatish Balay extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 16a30f8f8cSSatish Balay extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 17a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 18a30f8f8cSSatish Balay extern int MatZeroRows_SeqSBAIJ(Mat,IS,Scalar*); 1900319c27SSatish Balay extern int MatZeroRows_SeqBAIJ(Mat,IS,Scalar *); 20a30f8f8cSSatish Balay 21a30f8f8cSSatish Balay /* UGLY, ugly, ugly 22a30f8f8cSSatish Balay When MatScalar == Scalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 23a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 24a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 25a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 26a30f8f8cSSatish Balay into the single precision data structures. 27a30f8f8cSSatish Balay */ 28a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 29a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 30a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 31a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 32a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay #else 35a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 36a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 40a30f8f8cSSatish Balay #endif 41a30f8f8cSSatish Balay 42a30f8f8cSSatish Balay EXTERN_C_BEGIN 43a30f8f8cSSatish Balay #undef __FUNC__ 44f3566a2aSHong Zhang #define __FUNC__ /*<a name="MatStoreValues_MPISBAIJ"></a>*/"MatStoreValues_MPISBAIJ" 45a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 46a30f8f8cSSatish Balay { 47f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 48a30f8f8cSSatish Balay int ierr; 49a30f8f8cSSatish Balay 50a30f8f8cSSatish Balay PetscFunctionBegin; 51a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 52a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 53a30f8f8cSSatish Balay PetscFunctionReturn(0); 54a30f8f8cSSatish Balay } 55a30f8f8cSSatish Balay EXTERN_C_END 56a30f8f8cSSatish Balay 57a30f8f8cSSatish Balay EXTERN_C_BEGIN 58a30f8f8cSSatish Balay #undef __FUNC__ 59f3566a2aSHong Zhang #define __FUNC__ /*<a name="MatRetrieveValues_MPISBAIJ"></a>*/"MatRetrieveValues_MPISBAIJ" 60a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 61a30f8f8cSSatish Balay { 62f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 63a30f8f8cSSatish Balay int ierr; 64a30f8f8cSSatish Balay 65a30f8f8cSSatish Balay PetscFunctionBegin; 66a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 67a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 68a30f8f8cSSatish Balay PetscFunctionReturn(0); 69a30f8f8cSSatish Balay } 70a30f8f8cSSatish Balay EXTERN_C_END 71a30f8f8cSSatish Balay 72a30f8f8cSSatish Balay /* 73a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 74a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 75a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 76a30f8f8cSSatish Balay length of colmap equals the global matrix length. 77a30f8f8cSSatish Balay */ 78a30f8f8cSSatish Balay #undef __FUNC__ 79a30f8f8cSSatish Balay #define __FUNC__ /*<a name="CreateColmap_MPISBAIJ_Private"></a>*/"CreateColmap_MPISBAIJ_Private" 80a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 81a30f8f8cSSatish Balay { 82a30f8f8cSSatish Balay PetscFunctionBegin; 83*29bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 85a30f8f8cSSatish Balay } 86a30f8f8cSSatish Balay 87a30f8f8cSSatish Balay #define CHUNKSIZE 10 88a30f8f8cSSatish Balay 89a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 90a30f8f8cSSatish Balay { \ 91a30f8f8cSSatish Balay \ 92a30f8f8cSSatish Balay brow = row/bs; \ 93a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 94a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 95a30f8f8cSSatish Balay bcol = col/bs; \ 96a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 97a30f8f8cSSatish Balay low = 0; high = nrow; \ 98a30f8f8cSSatish Balay while (high-low > 3) { \ 99a30f8f8cSSatish Balay t = (low+high)/2; \ 100a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 101a30f8f8cSSatish Balay else low = t; \ 102a30f8f8cSSatish Balay } \ 103a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 104a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 105a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 106a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 107a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 108a30f8f8cSSatish Balay else *bap = value; \ 109a30f8f8cSSatish Balay goto a_noinsert; \ 110a30f8f8cSSatish Balay } \ 111a30f8f8cSSatish Balay } \ 112a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 113*29bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 114a30f8f8cSSatish Balay if (nrow >= rmax) { \ 115a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 116a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 117a30f8f8cSSatish Balay MatScalar *new_a; \ 118a30f8f8cSSatish Balay \ 119*29bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 120a30f8f8cSSatish Balay \ 121a30f8f8cSSatish Balay /* malloc new storage space */ \ 122a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 123a30f8f8cSSatish Balay new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 124a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 125a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 126a30f8f8cSSatish Balay \ 127a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 128a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 129a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 130a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 131a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 132a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 135a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 136a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 137a30f8f8cSSatish Balay /* free up old matrix storage */ \ 138a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 139a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 140a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 142a30f8f8cSSatish Balay } \ 143a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 144a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 145a30f8f8cSSatish Balay \ 146a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 147a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 148a30f8f8cSSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 149a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 150a30f8f8cSSatish Balay a->reallocs++; \ 151a30f8f8cSSatish Balay a->s_nz++; \ 152a30f8f8cSSatish Balay } \ 153a30f8f8cSSatish Balay N = nrow++ - 1; \ 154a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 155a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 156a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 157a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 158a30f8f8cSSatish Balay } \ 159a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 160a30f8f8cSSatish Balay rp[_i] = bcol; \ 161a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 162a30f8f8cSSatish Balay a_noinsert:; \ 163a30f8f8cSSatish Balay ailen[brow] = nrow; \ 164a30f8f8cSSatish Balay } 165a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 166a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 167a30f8f8cSSatish Balay { \ 168a30f8f8cSSatish Balay brow = row/bs; \ 169a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 170a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 171a30f8f8cSSatish Balay bcol = col/bs; \ 172a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 173a30f8f8cSSatish Balay low = 0; high = nrow; \ 174a30f8f8cSSatish Balay while (high-low > 3) { \ 175a30f8f8cSSatish Balay t = (low+high)/2; \ 176a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 177a30f8f8cSSatish Balay else low = t; \ 178a30f8f8cSSatish Balay } \ 179a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 180a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 181a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 182a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 183a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 184a30f8f8cSSatish Balay else *bap = value; \ 185a30f8f8cSSatish Balay goto b_noinsert; \ 186a30f8f8cSSatish Balay } \ 187a30f8f8cSSatish Balay } \ 188a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 189*29bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 190a30f8f8cSSatish Balay if (nrow >= rmax) { \ 191a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 192a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 193a30f8f8cSSatish Balay MatScalar *new_a; \ 194a30f8f8cSSatish Balay \ 195*29bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 196a30f8f8cSSatish Balay \ 197a30f8f8cSSatish Balay /* malloc new storage space */ \ 198a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 199a30f8f8cSSatish Balay new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 200a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 201a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 202a30f8f8cSSatish Balay \ 203a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 204a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 205a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 206a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 207a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 208a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 211a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 212a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay /* free up old matrix storage */ \ 214a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 215a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 216a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay } \ 219a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 220a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 221a30f8f8cSSatish Balay \ 222a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 223a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 224a30f8f8cSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 225a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 226a30f8f8cSSatish Balay b->reallocs++; \ 227a30f8f8cSSatish Balay b->nz++; \ 228a30f8f8cSSatish Balay } \ 229a30f8f8cSSatish Balay N = nrow++ - 1; \ 230a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 231a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 232a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 233a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 234a30f8f8cSSatish Balay } \ 235a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 236a30f8f8cSSatish Balay rp[_i] = bcol; \ 237a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 238a30f8f8cSSatish Balay b_noinsert:; \ 239a30f8f8cSSatish Balay bilen[brow] = nrow; \ 240a30f8f8cSSatish Balay } 241a30f8f8cSSatish Balay #endif 242a30f8f8cSSatish Balay 243a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 244a30f8f8cSSatish Balay #undef __FUNC__ 245a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ"></a>*/"MatSetValues_MPISBAIJ" 246a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 247a30f8f8cSSatish Balay { 248a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 249a30f8f8cSSatish Balay int ierr,i,N = m*n; 250a30f8f8cSSatish Balay MatScalar *vsingle; 251a30f8f8cSSatish Balay 252a30f8f8cSSatish Balay PetscFunctionBegin; 253a30f8f8cSSatish Balay if (N > b->setvalueslen) { 254a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 255a30f8f8cSSatish Balay b->setvaluescopy = (MatScalar*)PetscMalloc(N*sizeof(MatScalar));CHKPTRQ(b->setvaluescopy); 256a30f8f8cSSatish Balay b->setvalueslen = N; 257a30f8f8cSSatish Balay } 258a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 259a30f8f8cSSatish Balay 260a30f8f8cSSatish Balay for (i=0; i<N; i++) { 261a30f8f8cSSatish Balay vsingle[i] = v[i]; 262a30f8f8cSSatish Balay } 263a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 264a30f8f8cSSatish Balay PetscFunctionReturn(0); 265a30f8f8cSSatish Balay } 266a30f8f8cSSatish Balay 267a30f8f8cSSatish Balay #undef __FUNC__ 268a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ"></a>*/"MatSetValuesBlocked_MPISBAIJ" 269a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 270a30f8f8cSSatish Balay { 271a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 272a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 273a30f8f8cSSatish Balay MatScalar *vsingle; 274a30f8f8cSSatish Balay 275a30f8f8cSSatish Balay PetscFunctionBegin; 276a30f8f8cSSatish Balay if (N > b->setvalueslen) { 277a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 278a30f8f8cSSatish Balay b->setvaluescopy = (MatScalar*)PetscMalloc(N*sizeof(MatScalar));CHKPTRQ(b->setvaluescopy); 279a30f8f8cSSatish Balay b->setvalueslen = N; 280a30f8f8cSSatish Balay } 281a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 282a30f8f8cSSatish Balay for (i=0; i<N; i++) { 283a30f8f8cSSatish Balay vsingle[i] = v[i]; 284a30f8f8cSSatish Balay } 285a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 286a30f8f8cSSatish Balay PetscFunctionReturn(0); 287a30f8f8cSSatish Balay } 288a30f8f8cSSatish Balay 289a30f8f8cSSatish Balay #undef __FUNC__ 290a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ_HT"></a>*/"MatSetValues_MPISBAIJ_HT" 291a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 292a30f8f8cSSatish Balay { 293a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 294a30f8f8cSSatish Balay int ierr,i,N = m*n; 295a30f8f8cSSatish Balay MatScalar *vsingle; 296a30f8f8cSSatish Balay 297a30f8f8cSSatish Balay PetscFunctionBegin; 298*29bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 2994d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 300a30f8f8cSSatish Balay } 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay #undef __FUNC__ 303a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ_HT"></a>*/"MatSetValuesBlocked_MPISBAIJ_HT" 304a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 305a30f8f8cSSatish Balay { 306a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 307a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 308a30f8f8cSSatish Balay MatScalar *vsingle; 309a30f8f8cSSatish Balay 310a30f8f8cSSatish Balay PetscFunctionBegin; 311*29bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3124d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 313a30f8f8cSSatish Balay } 314a30f8f8cSSatish Balay #endif 315a30f8f8cSSatish Balay 316a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 317a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 318a30f8f8cSSatish Balay */ 319a30f8f8cSSatish Balay #undef __FUNC__ 320a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPIBAIJ"></a>*/"MatSetValues_MPIBAIJ" 321a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 322a30f8f8cSSatish Balay { 323a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 324a30f8f8cSSatish Balay MatScalar value; 325a30f8f8cSSatish Balay int ierr,i,j,row,col; 326a30f8f8cSSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 327a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 328a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 329a30f8f8cSSatish Balay 330a30f8f8cSSatish Balay /* Some Variables required in the macro */ 331a30f8f8cSSatish Balay Mat A = baij->A; 332a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 333a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 334a30f8f8cSSatish Balay MatScalar *aa=a->a; 335a30f8f8cSSatish Balay 336a30f8f8cSSatish Balay Mat B = baij->B; 337a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 338a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 339a30f8f8cSSatish Balay MatScalar *ba=b->a; 340a30f8f8cSSatish Balay 341a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 342a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 343a30f8f8cSSatish Balay MatScalar *ap,*bap; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay /* for stash */ 346f65c83cfSHong Zhang int n_loc, *in_loc=0; 347f65c83cfSHong Zhang MatScalar *v_loc=0; 348a30f8f8cSSatish Balay 349a30f8f8cSSatish Balay PetscFunctionBegin; 350a30f8f8cSSatish Balay 351a30f8f8cSSatish Balay if(!baij->donotstash){ 352a30f8f8cSSatish Balay in_loc = (int*)PetscMalloc(n*sizeof(int));CHKPTRQ(in_loc); 353a30f8f8cSSatish Balay v_loc = (MatScalar*)PetscMalloc(n*sizeof(MatScalar));CHKPTRQ(v_loc); 354a30f8f8cSSatish Balay } 355a30f8f8cSSatish Balay 356a30f8f8cSSatish Balay for (i=0; i<m; i++) { 357a30f8f8cSSatish Balay if (im[i] < 0) continue; 358a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 359*29bbc08cSBarry Smith if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 360a30f8f8cSSatish Balay #endif 361a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 362a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 363a30f8f8cSSatish Balay for (j=0; j<n; j++) { 364f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 365a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 366a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 367a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 368a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 369a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 370a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 371a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 372a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 373a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 374*29bbc08cSBarry Smith else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 375a30f8f8cSSatish Balay #endif 376a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 377a30f8f8cSSatish Balay if (mat->was_assembled) { 378a30f8f8cSSatish Balay if (!baij->colmap) { 379a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 382a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 383a30f8f8cSSatish Balay col = col - 1 + in[j]%bs; 384a30f8f8cSSatish Balay #else 385a30f8f8cSSatish Balay col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 386a30f8f8cSSatish Balay #endif 387a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 388a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 389a30f8f8cSSatish Balay col = in[j]; 390a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 391a30f8f8cSSatish Balay B = baij->B; 392a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 393a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 394a30f8f8cSSatish Balay ba=b->a; 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } else col = in[j]; 397a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 398a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 399a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 400a30f8f8cSSatish Balay } 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay } else { /* off processor entry */ 403a30f8f8cSSatish Balay if (!baij->donotstash) { 404a30f8f8cSSatish Balay n_loc = 0; 405a30f8f8cSSatish Balay for (j=0; j<n; j++){ 406f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 407a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 408a30f8f8cSSatish Balay if (roworiented) { 409a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 410a30f8f8cSSatish Balay } else { 411a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 412a30f8f8cSSatish Balay } 413a30f8f8cSSatish Balay n_loc++; 414a30f8f8cSSatish Balay } 415a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay 420a30f8f8cSSatish Balay if(!baij->donotstash){ 421a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 422a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 423a30f8f8cSSatish Balay } 424a30f8f8cSSatish Balay PetscFunctionReturn(0); 425a30f8f8cSSatish Balay } 426a30f8f8cSSatish Balay 427a30f8f8cSSatish Balay #undef __FUNC__ 428a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ"></a>*/"MatSetValuesBlocked_MPISBAIJ" 429a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 430a30f8f8cSSatish Balay { 431a30f8f8cSSatish Balay PetscFunctionBegin; 432*29bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 43396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 434a30f8f8cSSatish Balay } 435a30f8f8cSSatish Balay 436a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 437a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 438a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 439a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 440a30f8f8cSSatish Balay #undef __FUNC__ 441a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ_HT_MatScalar"></a>*/"MatSetValues_MPISBAIJ_HT_MatScalar" 442a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 443a30f8f8cSSatish Balay { 444a30f8f8cSSatish Balay PetscFunctionBegin; 445*29bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 44696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 447a30f8f8cSSatish Balay } 448a30f8f8cSSatish Balay 449a30f8f8cSSatish Balay #undef __FUNC__ 450a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 451a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 452a30f8f8cSSatish Balay { 453a30f8f8cSSatish Balay PetscFunctionBegin; 454*29bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 456a30f8f8cSSatish Balay } 457a30f8f8cSSatish Balay 458a30f8f8cSSatish Balay #undef __FUNC__ 459a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetValues_MPISBAIJ" 460a30f8f8cSSatish Balay int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 461a30f8f8cSSatish Balay { 462f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 463a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 464a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 465a30f8f8cSSatish Balay 466a30f8f8cSSatish Balay PetscFunctionBegin; 467a30f8f8cSSatish Balay for (i=0; i<m; i++) { 468*29bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 469*29bbc08cSBarry Smith if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 470a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 471a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 472a30f8f8cSSatish Balay for (j=0; j<n; j++) { 473*29bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 474*29bbc08cSBarry Smith if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 475a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 476a30f8f8cSSatish Balay col = idxn[j] - bscstart; 477c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 478a30f8f8cSSatish Balay } else { 479a30f8f8cSSatish Balay if (!baij->colmap) { 480a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 481a30f8f8cSSatish Balay } 482a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 483a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 484a30f8f8cSSatish Balay data --; 485a30f8f8cSSatish Balay #else 486a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 487a30f8f8cSSatish Balay #endif 488a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 489a30f8f8cSSatish Balay else { 490a30f8f8cSSatish Balay col = data + idxn[j]%bs; 491c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 492a30f8f8cSSatish Balay } 493a30f8f8cSSatish Balay } 494a30f8f8cSSatish Balay } 495a30f8f8cSSatish Balay } else { 496*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 497a30f8f8cSSatish Balay } 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay PetscFunctionReturn(0); 500a30f8f8cSSatish Balay } 501a30f8f8cSSatish Balay 502a30f8f8cSSatish Balay #undef __FUNC__ 503a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatNorm_MPISBAIJ" 504a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 505a30f8f8cSSatish Balay { 506a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 507bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 508bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 509a30f8f8cSSatish Balay int ierr; 510a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 511a30f8f8cSSatish Balay 512a30f8f8cSSatish Balay PetscFunctionBegin; 513a30f8f8cSSatish Balay if (baij->size == 1) { 514a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 515a30f8f8cSSatish Balay } else { 516a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 517ee237329SHong Zhang lnorm2 = (double*)PetscMalloc(2*sizeof(double));CHKPTRQ(lnorm2); 518a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 519a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 520a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 521a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 522a30f8f8cSSatish Balay /* 523a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 524a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 525a30f8f8cSSatish Balay */ 526a30f8f8cSSatish Balay ierr = MPI_Allreduce(lnorm2,&sum,2,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 527a30f8f8cSSatish Balay /* 528a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 529a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 530a30f8f8cSSatish Balay 531a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 532a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 533a30f8f8cSSatish Balay } else { 534*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 535a30f8f8cSSatish Balay } 536a30f8f8cSSatish Balay } 537a30f8f8cSSatish Balay PetscFunctionReturn(0); 538a30f8f8cSSatish Balay } 539a30f8f8cSSatish Balay 540a30f8f8cSSatish Balay /* 541a30f8f8cSSatish Balay Creates the hash table, and sets the table 542a30f8f8cSSatish Balay This table is created only once. 543a30f8f8cSSatish Balay If new entried need to be added to the matrix 544a30f8f8cSSatish Balay then the hash table has to be destroyed and 545a30f8f8cSSatish Balay recreated. 546a30f8f8cSSatish Balay */ 547a30f8f8cSSatish Balay #undef __FUNC__ 548a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatCreateHashTable_MPISBAIJ_Private" 549a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 550a30f8f8cSSatish Balay { 551a30f8f8cSSatish Balay PetscFunctionBegin; 552*29bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 554a30f8f8cSSatish Balay } 555a30f8f8cSSatish Balay 556a30f8f8cSSatish Balay #undef __FUNC__ 557a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatAssemblyBegin_MPISBAIJ" 558a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 559a30f8f8cSSatish Balay { 560a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 561a30f8f8cSSatish Balay int ierr,nstash,reallocs; 562a30f8f8cSSatish Balay InsertMode addv; 563a30f8f8cSSatish Balay 564a30f8f8cSSatish Balay PetscFunctionBegin; 565a30f8f8cSSatish Balay if (baij->donotstash) { 566a30f8f8cSSatish Balay PetscFunctionReturn(0); 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay 569a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 570a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 571a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 572*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 573a30f8f8cSSatish Balay } 574a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 575a30f8f8cSSatish Balay 576a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 577a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 578a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 579a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 580a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 581a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 582a30f8f8cSSatish Balay PetscFunctionReturn(0); 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay 585a30f8f8cSSatish Balay #undef __FUNC__ 586a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatAssemblyEnd_MPISBAIJ" 587a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 588a30f8f8cSSatish Balay { 589a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 590a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 591a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 592a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 593a30f8f8cSSatish Balay int *row,*col,other_disassembled; 594a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 595a30f8f8cSSatish Balay MatScalar *val; 596a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 597a30f8f8cSSatish Balay int rank; 598a30f8f8cSSatish Balay 599a30f8f8cSSatish Balay PetscFunctionBegin; 600a30f8f8cSSatish Balay /* remove 2 line below later */ 601a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD, &rank);CHKERRQ(ierr); 602a30f8f8cSSatish Balay 603a30f8f8cSSatish Balay if (!baij->donotstash) { 604a30f8f8cSSatish Balay while (1) { 605a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 606a30f8f8cSSatish Balay /* 607a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 608a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 609a30f8f8cSSatish Balay */ 610a30f8f8cSSatish Balay if (!flg) break; 611a30f8f8cSSatish Balay 612a30f8f8cSSatish Balay for (i=0; i<n;) { 613a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 614a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 615a30f8f8cSSatish Balay if (j < n) ncols = j-i; 616a30f8f8cSSatish Balay else ncols = n-i; 617a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 618a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 619a30f8f8cSSatish Balay i = j; 620a30f8f8cSSatish Balay } 621a30f8f8cSSatish Balay } 622a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 623a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 624a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 625a30f8f8cSSatish Balay restore the original flags */ 626a30f8f8cSSatish Balay r1 = baij->roworiented; 627a30f8f8cSSatish Balay r2 = a->roworiented; 628a30f8f8cSSatish Balay r3 = b->roworiented; 629a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 630a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 631a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 632a30f8f8cSSatish Balay while (1) { 633a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 634a30f8f8cSSatish Balay if (!flg) break; 635a30f8f8cSSatish Balay 636a30f8f8cSSatish Balay for (i=0; i<n;) { 637a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 638a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 639a30f8f8cSSatish Balay if (j < n) ncols = j-i; 640a30f8f8cSSatish Balay else ncols = n-i; 641a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 642a30f8f8cSSatish Balay i = j; 643a30f8f8cSSatish Balay } 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 646a30f8f8cSSatish Balay baij->roworiented = r1; 647a30f8f8cSSatish Balay a->roworiented = r2; 648a30f8f8cSSatish Balay b->roworiented = r3; 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 651a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 652a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 653a30f8f8cSSatish Balay 654a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 655a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 656a30f8f8cSSatish Balay /* 657a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 658a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 659a30f8f8cSSatish Balay */ 660a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 661a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 662a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 663c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay } 666a30f8f8cSSatish Balay 667a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 668a30f8f8cSSatish Balay ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); 669a30f8f8cSSatish Balay } 670a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 671a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 672a30f8f8cSSatish Balay 673a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 674a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 675a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((double)baij->ht_total_ct)/baij->ht_insert_ct); 676a30f8f8cSSatish Balay baij->ht_total_ct = 0; 677a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 678a30f8f8cSSatish Balay } 679a30f8f8cSSatish Balay #endif 680a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 681c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 682a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 683a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay 686a30f8f8cSSatish Balay if (baij->rowvalues) { 687a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 688a30f8f8cSSatish Balay baij->rowvalues = 0; 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay PetscFunctionReturn(0); 691a30f8f8cSSatish Balay } 692a30f8f8cSSatish Balay 693a30f8f8cSSatish Balay #undef __FUNC__ 694a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatView_MPISBAIJ_ASCIIorDraworSocket" 695a30f8f8cSSatish Balay static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer) 696a30f8f8cSSatish Balay { 697a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 698a30f8f8cSSatish Balay int ierr,format,bs = baij->bs,size = baij->size,rank = baij->rank; 699a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 70065d70643SHong Zhang Viewer sviewer; 701a30f8f8cSSatish Balay 702a30f8f8cSSatish Balay PetscFunctionBegin; 703a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 704a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 705a30f8f8cSSatish Balay if (isascii) { 706a30f8f8cSSatish Balay ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr); 707a30f8f8cSSatish Balay if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 708a30f8f8cSSatish Balay MatInfo info; 709a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 710a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 711a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 712a30f8f8cSSatish Balay rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 713a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 714a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 716a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = ViewerFlush(viewer);CHKERRQ(ierr); 719a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 720a30f8f8cSSatish Balay PetscFunctionReturn(0); 721a30f8f8cSSatish Balay } else if (format == VIEWER_FORMAT_ASCII_INFO) { 722a30f8f8cSSatish Balay ierr = ViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 723a30f8f8cSSatish Balay PetscFunctionReturn(0); 724a30f8f8cSSatish Balay } 725a30f8f8cSSatish Balay } 726a30f8f8cSSatish Balay 727a30f8f8cSSatish Balay if (isdraw) { 728a30f8f8cSSatish Balay Draw draw; 729a30f8f8cSSatish Balay PetscTruth isnull; 730a30f8f8cSSatish Balay ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 731a30f8f8cSSatish Balay ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 732a30f8f8cSSatish Balay } 733a30f8f8cSSatish Balay 734a30f8f8cSSatish Balay if (size == 1) { 735a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 736a30f8f8cSSatish Balay } else { 737a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 738a30f8f8cSSatish Balay Mat A; 73965d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 74065d70643SHong Zhang Mat_SeqBAIJ *Bloc; 741a30f8f8cSSatish Balay int M = baij->M,N = baij->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 742a30f8f8cSSatish Balay MatScalar *a; 743a30f8f8cSSatish Balay 744a30f8f8cSSatish Balay if (!rank) { 745bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 746a30f8f8cSSatish Balay } else { 747f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 748a30f8f8cSSatish Balay } 749a30f8f8cSSatish Balay PLogObjectParent(mat,A); 750a30f8f8cSSatish Balay 751a30f8f8cSSatish Balay /* copy over the A part */ 75265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 753a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 754a30f8f8cSSatish Balay rvals = (int*)PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 755a30f8f8cSSatish Balay 756a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 757a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 758a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 759a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 760a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 761a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 762a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 763a30f8f8cSSatish Balay col++; a += bs; 764a30f8f8cSSatish Balay } 765a30f8f8cSSatish Balay } 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay /* copy over the B part */ 76865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 76965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 770a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 771a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 772a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 773a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 774a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 775a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 776a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 777a30f8f8cSSatish Balay col++; a += bs; 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay } 780a30f8f8cSSatish Balay } 781a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 782a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 783a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 784a30f8f8cSSatish Balay /* 785a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 786a30f8f8cSSatish Balay synchronized across all processors that share the Draw object 787a30f8f8cSSatish Balay */ 788a30f8f8cSSatish Balay ierr = ViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 78965d70643SHong Zhang if (!rank) { 790a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 791a30f8f8cSSatish Balay } 79265d70643SHong Zhang ierr = ViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 793a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 794a30f8f8cSSatish Balay } 795a30f8f8cSSatish Balay PetscFunctionReturn(0); 796a30f8f8cSSatish Balay } 797a30f8f8cSSatish Balay 798a30f8f8cSSatish Balay #undef __FUNC__ 799a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatView_MPISBAIJ" 800a30f8f8cSSatish Balay int MatView_MPISBAIJ(Mat mat,Viewer viewer) 801a30f8f8cSSatish Balay { 802a30f8f8cSSatish Balay int ierr; 803a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 804a30f8f8cSSatish Balay 805a30f8f8cSSatish Balay PetscFunctionBegin; 806a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 807a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 808a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,SOCKET_VIEWER,&issocket);CHKERRQ(ierr); 809a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,BINARY_VIEWER,&isbinary);CHKERRQ(ierr); 810a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 811a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 812a30f8f8cSSatish Balay } else { 813*29bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 814a30f8f8cSSatish Balay } 815a30f8f8cSSatish Balay PetscFunctionReturn(0); 816a30f8f8cSSatish Balay } 817a30f8f8cSSatish Balay 818a30f8f8cSSatish Balay #undef __FUNC__ 819a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDestroy_MPISBAIJ" 820a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 821a30f8f8cSSatish Balay { 822a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 823a30f8f8cSSatish Balay int ierr; 824a30f8f8cSSatish Balay 825a30f8f8cSSatish Balay PetscFunctionBegin; 826a30f8f8cSSatish Balay 827a30f8f8cSSatish Balay if (mat->mapping) { 828a30f8f8cSSatish Balay ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr); 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay if (mat->bmapping) { 831a30f8f8cSSatish Balay ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr); 832a30f8f8cSSatish Balay } 833a30f8f8cSSatish Balay if (mat->rmap) { 834a30f8f8cSSatish Balay ierr = MapDestroy(mat->rmap);CHKERRQ(ierr); 835a30f8f8cSSatish Balay } 836a30f8f8cSSatish Balay if (mat->cmap) { 837a30f8f8cSSatish Balay ierr = MapDestroy(mat->cmap);CHKERRQ(ierr); 838a30f8f8cSSatish Balay } 839a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 840a30f8f8cSSatish Balay PLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",baij->M,baij->N); 841a30f8f8cSSatish Balay #endif 842a30f8f8cSSatish Balay 843a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 844a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 845a30f8f8cSSatish Balay 846a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 847a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 848a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 849a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 850a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 851a30f8f8cSSatish Balay #else 852a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 853a30f8f8cSSatish Balay #endif 854a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 855a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 856a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 857a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 858a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 859a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 860a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 861a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 862a30f8f8cSSatish Balay #endif 863a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 864a30f8f8cSSatish Balay PLogObjectDestroy(mat); 865a30f8f8cSSatish Balay PetscHeaderDestroy(mat); 866a30f8f8cSSatish Balay PetscFunctionReturn(0); 867a30f8f8cSSatish Balay } 868a30f8f8cSSatish Balay 869a30f8f8cSSatish Balay #undef __FUNC__ 870a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMult_MPISBAIJ" 871a30f8f8cSSatish Balay int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 872a30f8f8cSSatish Balay { 873a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 874a30f8f8cSSatish Balay int ierr,nt; 875a30f8f8cSSatish Balay 876a30f8f8cSSatish Balay PetscFunctionBegin; 877a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 878a30f8f8cSSatish Balay if (nt != a->n) { 879*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 880a30f8f8cSSatish Balay } 881a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 882a30f8f8cSSatish Balay if (nt != a->m) { 883*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 884a30f8f8cSSatish Balay } 88565d70643SHong Zhang 886b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 887b941877fSHong Zhang /* do diagonal part */ 888b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 889b941877fSHong Zhang /* do supperdiagonal part */ 890b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 891b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 892b941877fSHong Zhang /* do subdiagonal part */ 893b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 894b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 895b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 89665d70643SHong Zhang 897a30f8f8cSSatish Balay PetscFunctionReturn(0); 898a30f8f8cSSatish Balay } 899a30f8f8cSSatish Balay 900a30f8f8cSSatish Balay #undef __FUNC__ 901a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultAdd_MPISBAIJ" 902a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 903a30f8f8cSSatish Balay { 904de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 905aa482183SHong Zhang int ierr; 906a30f8f8cSSatish Balay 907a30f8f8cSSatish Balay PetscFunctionBegin; 908b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 909b941877fSHong Zhang /* do diagonal part */ 910b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 911b941877fSHong Zhang /* do supperdiagonal part */ 912b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 913de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 914de8b6608SHong Zhang 915b941877fSHong Zhang /* do subdiagonal part */ 916a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 917a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 918a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 919aa482183SHong Zhang 920a30f8f8cSSatish Balay PetscFunctionReturn(0); 921a30f8f8cSSatish Balay } 922a30f8f8cSSatish Balay 923a30f8f8cSSatish Balay #undef __FUNC__ 924a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultTranspose_MPISBAIJ" 925a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 926a30f8f8cSSatish Balay { 927a30f8f8cSSatish Balay PetscFunctionBegin; 928*29bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 92996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 930a30f8f8cSSatish Balay } 931a30f8f8cSSatish Balay 932a30f8f8cSSatish Balay #undef __FUNC__ 933a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultTransposeAdd_MPISBAIJ" 934a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 935a30f8f8cSSatish Balay { 936a30f8f8cSSatish Balay PetscFunctionBegin; 937*29bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 93896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 939a30f8f8cSSatish Balay } 940a30f8f8cSSatish Balay 941a30f8f8cSSatish Balay /* 942a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 943a30f8f8cSSatish Balay diagonal block 944a30f8f8cSSatish Balay */ 945a30f8f8cSSatish Balay #undef __FUNC__ 946a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonal_MPISBAIJ" 947a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 948a30f8f8cSSatish Balay { 949a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 950a30f8f8cSSatish Balay int ierr; 951a30f8f8cSSatish Balay 952a30f8f8cSSatish Balay PetscFunctionBegin; 953*29bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 954a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 955a30f8f8cSSatish Balay PetscFunctionReturn(0); 956a30f8f8cSSatish Balay } 957a30f8f8cSSatish Balay 958a30f8f8cSSatish Balay #undef __FUNC__ 959a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatScale_MPISBAIJ" 960a30f8f8cSSatish Balay int MatScale_MPISBAIJ(Scalar *aa,Mat A) 961a30f8f8cSSatish Balay { 962a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 963a30f8f8cSSatish Balay int ierr; 964a30f8f8cSSatish Balay 965a30f8f8cSSatish Balay PetscFunctionBegin; 966a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 967a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 968a30f8f8cSSatish Balay PetscFunctionReturn(0); 969a30f8f8cSSatish Balay } 970a30f8f8cSSatish Balay 971a30f8f8cSSatish Balay #undef __FUNC__ 972a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetSize_MPISBAIJ" 973a30f8f8cSSatish Balay int MatGetSize_MPISBAIJ(Mat matin,int *m,int *n) 974a30f8f8cSSatish Balay { 975a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 976a30f8f8cSSatish Balay 977a30f8f8cSSatish Balay PetscFunctionBegin; 978a30f8f8cSSatish Balay if (m) *m = mat->M; 979a30f8f8cSSatish Balay if (n) *n = mat->N; 980a30f8f8cSSatish Balay PetscFunctionReturn(0); 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay 983a30f8f8cSSatish Balay #undef __FUNC__ 984a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetLocalSize_MPISBAIJ" 985a30f8f8cSSatish Balay int MatGetLocalSize_MPISBAIJ(Mat matin,int *m,int *n) 986a30f8f8cSSatish Balay { 987a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 988a30f8f8cSSatish Balay 989a30f8f8cSSatish Balay PetscFunctionBegin; 990a30f8f8cSSatish Balay *m = mat->m; *n = mat->n; 991a30f8f8cSSatish Balay PetscFunctionReturn(0); 992a30f8f8cSSatish Balay } 993a30f8f8cSSatish Balay 994a30f8f8cSSatish Balay #undef __FUNC__ 995a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetOwnershipRange_MPISBAIJ" 996a30f8f8cSSatish Balay int MatGetOwnershipRange_MPISBAIJ(Mat matin,int *m,int *n) 997a30f8f8cSSatish Balay { 998a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 999a30f8f8cSSatish Balay 1000a30f8f8cSSatish Balay PetscFunctionBegin; 1001a30f8f8cSSatish Balay if (m) *m = mat->rstart*mat->bs; 1002a30f8f8cSSatish Balay if (n) *n = mat->rend*mat->bs; 1003a30f8f8cSSatish Balay PetscFunctionReturn(0); 1004a30f8f8cSSatish Balay } 1005a30f8f8cSSatish Balay 1006a30f8f8cSSatish Balay #undef __FUNC__ 1007a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetRow_MPISBAIJ" 1008a30f8f8cSSatish Balay int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1009a30f8f8cSSatish Balay { 1010a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1011a30f8f8cSSatish Balay Scalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1012a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1013a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1014a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1015a30f8f8cSSatish Balay 1016a30f8f8cSSatish Balay PetscFunctionBegin; 1017*29bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1018a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1019a30f8f8cSSatish Balay 1020a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1021a30f8f8cSSatish Balay /* 1022a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1023a30f8f8cSSatish Balay */ 1024a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1025a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1026a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1027a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1028a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1029a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1030a30f8f8cSSatish Balay } 1031a30f8f8cSSatish Balay mat->rowvalues = (Scalar*)PetscMalloc(max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues); 1032a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1033a30f8f8cSSatish Balay } 1034a30f8f8cSSatish Balay 1035*29bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1036a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1037a30f8f8cSSatish Balay 1038a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1039a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1040a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1041a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1042a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1043a30f8f8cSSatish Balay nztot = nzA + nzB; 1044a30f8f8cSSatish Balay 1045a30f8f8cSSatish Balay cmap = mat->garray; 1046a30f8f8cSSatish Balay if (v || idx) { 1047a30f8f8cSSatish Balay if (nztot) { 1048a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1049a30f8f8cSSatish Balay int imark = -1; 1050a30f8f8cSSatish Balay if (v) { 1051a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1052a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1053a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1054a30f8f8cSSatish Balay else break; 1055a30f8f8cSSatish Balay } 1056a30f8f8cSSatish Balay imark = i; 1057a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1058a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1059a30f8f8cSSatish Balay } 1060a30f8f8cSSatish Balay if (idx) { 1061a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1062a30f8f8cSSatish Balay if (imark > -1) { 1063a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1064a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1065a30f8f8cSSatish Balay } 1066a30f8f8cSSatish Balay } else { 1067a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1068a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1069a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1070a30f8f8cSSatish Balay else break; 1071a30f8f8cSSatish Balay } 1072a30f8f8cSSatish Balay imark = i; 1073a30f8f8cSSatish Balay } 1074a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1075a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1076a30f8f8cSSatish Balay } 1077a30f8f8cSSatish Balay } else { 1078a30f8f8cSSatish Balay if (idx) *idx = 0; 1079a30f8f8cSSatish Balay if (v) *v = 0; 1080a30f8f8cSSatish Balay } 1081a30f8f8cSSatish Balay } 1082a30f8f8cSSatish Balay *nz = nztot; 1083a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1084a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1085a30f8f8cSSatish Balay PetscFunctionReturn(0); 1086a30f8f8cSSatish Balay } 1087a30f8f8cSSatish Balay 1088a30f8f8cSSatish Balay #undef __FUNC__ 1089a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatRestoreRow_MPISBAIJ" 1090a30f8f8cSSatish Balay int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1091a30f8f8cSSatish Balay { 1092a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1093a30f8f8cSSatish Balay 1094a30f8f8cSSatish Balay PetscFunctionBegin; 1095a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 1096*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1097a30f8f8cSSatish Balay } 1098a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1099a30f8f8cSSatish Balay PetscFunctionReturn(0); 1100a30f8f8cSSatish Balay } 1101a30f8f8cSSatish Balay 1102a30f8f8cSSatish Balay #undef __FUNC__ 1103a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetBlockSize_MPISBAIJ" 1104a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1105a30f8f8cSSatish Balay { 1106a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1107a30f8f8cSSatish Balay 1108a30f8f8cSSatish Balay PetscFunctionBegin; 1109a30f8f8cSSatish Balay *bs = baij->bs; 1110a30f8f8cSSatish Balay PetscFunctionReturn(0); 1111a30f8f8cSSatish Balay } 1112a30f8f8cSSatish Balay 1113a30f8f8cSSatish Balay #undef __FUNC__ 1114a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatZeroEntries_MPISBAIJ" 1115a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1116a30f8f8cSSatish Balay { 1117a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1118a30f8f8cSSatish Balay int ierr; 1119a30f8f8cSSatish Balay 1120a30f8f8cSSatish Balay PetscFunctionBegin; 1121a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1122a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1123a30f8f8cSSatish Balay PetscFunctionReturn(0); 1124a30f8f8cSSatish Balay } 1125a30f8f8cSSatish Balay 1126a30f8f8cSSatish Balay #undef __FUNC__ 1127a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetInfo_MPISBAIJ" 1128a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1129a30f8f8cSSatish Balay { 1130a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1131a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1132a30f8f8cSSatish Balay int ierr; 1133a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1134a30f8f8cSSatish Balay 1135a30f8f8cSSatish Balay PetscFunctionBegin; 1136a30f8f8cSSatish Balay info->block_size = (double)a->bs; 1137a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1139a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1140a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1141a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1142a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1143a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1144a30f8f8cSSatish Balay info->nz_used = isend[0]; 1145a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1146a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1147a30f8f8cSSatish Balay info->memory = isend[3]; 1148a30f8f8cSSatish Balay info->mallocs = isend[4]; 1149a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1150a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 1151a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1152a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1153a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1154a30f8f8cSSatish Balay info->memory = irecv[3]; 1155a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1156a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1157a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 1158a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1159a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1160a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1161a30f8f8cSSatish Balay info->memory = irecv[3]; 1162a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1163a30f8f8cSSatish Balay } else { 1164*29bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1165a30f8f8cSSatish Balay } 1166a30f8f8cSSatish Balay info->rows_global = (double)a->M; 1167a30f8f8cSSatish Balay info->columns_global = (double)a->N; 1168a30f8f8cSSatish Balay info->rows_local = (double)a->m; 1169a30f8f8cSSatish Balay info->columns_local = (double)a->N; 1170a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1171a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1172a30f8f8cSSatish Balay info->factor_mallocs = 0; 1173a30f8f8cSSatish Balay PetscFunctionReturn(0); 1174a30f8f8cSSatish Balay } 1175a30f8f8cSSatish Balay 1176a30f8f8cSSatish Balay #undef __FUNC__ 1177a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetOption_MPISBAIJ" 1178a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1179a30f8f8cSSatish Balay { 1180a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1181a30f8f8cSSatish Balay int ierr; 1182a30f8f8cSSatish Balay 1183a30f8f8cSSatish Balay PetscFunctionBegin; 1184a30f8f8cSSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 1185a30f8f8cSSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 1186a30f8f8cSSatish Balay op == MAT_COLUMNS_UNSORTED || 1187a30f8f8cSSatish Balay op == MAT_COLUMNS_SORTED || 1188a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 1189a30f8f8cSSatish Balay op == MAT_KEEP_ZEROED_ROWS || 1190a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 1191a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1192a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1193a30f8f8cSSatish Balay } else if (op == MAT_ROW_ORIENTED) { 1194a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1195a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1196a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1197a30f8f8cSSatish Balay } else if (op == MAT_ROWS_SORTED || 1198a30f8f8cSSatish Balay op == MAT_ROWS_UNSORTED || 1199a30f8f8cSSatish Balay op == MAT_SYMMETRIC || 1200a30f8f8cSSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1201a30f8f8cSSatish Balay op == MAT_YES_NEW_DIAGONALS || 1202a30f8f8cSSatish Balay op == MAT_USE_HASH_TABLE) { 1203a30f8f8cSSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1204a30f8f8cSSatish Balay } else if (op == MAT_COLUMN_ORIENTED) { 1205a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1206a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1207a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1208a30f8f8cSSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 1209a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1210a30f8f8cSSatish Balay } else if (op == MAT_NO_NEW_DIAGONALS) { 1211*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1212a30f8f8cSSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 1213a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1214a30f8f8cSSatish Balay } else { 1215*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1216a30f8f8cSSatish Balay } 1217a30f8f8cSSatish Balay PetscFunctionReturn(0); 1218a30f8f8cSSatish Balay } 1219a30f8f8cSSatish Balay 1220a30f8f8cSSatish Balay #undef __FUNC__ 1221a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatTranspose_MPISBAIJ(" 1222a30f8f8cSSatish Balay int MatTranspose_MPISBAIJ(Mat A,Mat *matout) 1223a30f8f8cSSatish Balay { 1224a30f8f8cSSatish Balay PetscFunctionBegin; 1225*29bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. MatTranspose() should not be called"); 122696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1227a30f8f8cSSatish Balay } 1228a30f8f8cSSatish Balay 1229a30f8f8cSSatish Balay #undef __FUNC__ 1230a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDiagonalScale_MPISBAIJ" 1231a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1232a30f8f8cSSatish Balay { 1233a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1234a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1235a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1236a30f8f8cSSatish Balay 1237a30f8f8cSSatish Balay PetscFunctionBegin; 1238a30f8f8cSSatish Balay if (ll != rr) { 1239*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1240a30f8f8cSSatish Balay } 1241a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1242a30f8f8cSSatish Balay if (rr) { 1243a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1244*29bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1245a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1246a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1247a30f8f8cSSatish Balay /*} if (ll) { */ 1248a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1249*29bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1250a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1251a30f8f8cSSatish Balay /* } */ 1252a30f8f8cSSatish Balay /* scale the diagonal block */ 1253a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1254a30f8f8cSSatish Balay 1255a30f8f8cSSatish Balay /* if (rr) { */ 1256a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1257a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1258a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1259a30f8f8cSSatish Balay } 1260a30f8f8cSSatish Balay 1261a30f8f8cSSatish Balay PetscFunctionReturn(0); 1262a30f8f8cSSatish Balay } 1263a30f8f8cSSatish Balay 1264a30f8f8cSSatish Balay #undef __FUNC__ 1265a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatZeroRows_MPISBAIJ" 1266a30f8f8cSSatish Balay int MatZeroRows_MPISBAIJ(Mat A,IS is,Scalar *diag) 1267a30f8f8cSSatish Balay { 1268a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1269a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 1270a30f8f8cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 1271a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1272a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1273a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1274a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1275a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1276a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1277a30f8f8cSSatish Balay IS istmp; 1278a30f8f8cSSatish Balay 1279a30f8f8cSSatish Balay PetscFunctionBegin; 1280a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1281a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1282a30f8f8cSSatish Balay 1283a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 1284a30f8f8cSSatish Balay nprocs = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(nprocs); 1285a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1286a30f8f8cSSatish Balay procs = nprocs + size; 1287a30f8f8cSSatish Balay owner = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/ 1288a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1289a30f8f8cSSatish Balay idx = rows[i]; 1290a30f8f8cSSatish Balay found = 0; 1291a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1292a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 1293a30f8f8cSSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 1294a30f8f8cSSatish Balay } 1295a30f8f8cSSatish Balay } 1296*29bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 1297a30f8f8cSSatish Balay } 1298a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1299a30f8f8cSSatish Balay 1300a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 1301a30f8f8cSSatish Balay work = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(work); 1302a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1303a30f8f8cSSatish Balay nmax = work[rank]; 1304a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1305a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay 1307a30f8f8cSSatish Balay /* post receives: */ 1308a30f8f8cSSatish Balay rvalues = (int*)PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 1309a30f8f8cSSatish Balay recv_waits = (MPI_Request*)PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 1310a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1311a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1312a30f8f8cSSatish Balay } 1313a30f8f8cSSatish Balay 1314a30f8f8cSSatish Balay /* do sends: 1315a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1316a30f8f8cSSatish Balay the ith processor 1317a30f8f8cSSatish Balay */ 1318a30f8f8cSSatish Balay svalues = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(svalues); 1319a30f8f8cSSatish Balay send_waits = (MPI_Request*)PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 1320a30f8f8cSSatish Balay starts = (int*)PetscMalloc((size+1)*sizeof(int));CHKPTRQ(starts); 1321a30f8f8cSSatish Balay starts[0] = 0; 1322a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1323a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1324a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1325a30f8f8cSSatish Balay } 1326a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1327a30f8f8cSSatish Balay 1328a30f8f8cSSatish Balay starts[0] = 0; 1329a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1330a30f8f8cSSatish Balay count = 0; 1331a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1332a30f8f8cSSatish Balay if (procs[i]) { 1333a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1334a30f8f8cSSatish Balay } 1335a30f8f8cSSatish Balay } 1336a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1337a30f8f8cSSatish Balay 1338a30f8f8cSSatish Balay base = owners[rank]*bs; 1339a30f8f8cSSatish Balay 1340a30f8f8cSSatish Balay /* wait on receives */ 1341a30f8f8cSSatish Balay lens = (int*)PetscMalloc(2*(nrecvs+1)*sizeof(int));CHKPTRQ(lens); 1342a30f8f8cSSatish Balay source = lens + nrecvs; 1343a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1344a30f8f8cSSatish Balay while (count) { 1345a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1346a30f8f8cSSatish Balay /* unpack receives into our local space */ 1347a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1348a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1349a30f8f8cSSatish Balay lens[imdex] = n; 1350a30f8f8cSSatish Balay slen += n; 1351a30f8f8cSSatish Balay count--; 1352a30f8f8cSSatish Balay } 1353a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1354a30f8f8cSSatish Balay 1355a30f8f8cSSatish Balay /* move the data into the send scatter */ 1356a30f8f8cSSatish Balay lrows = (int*)PetscMalloc((slen+1)*sizeof(int));CHKPTRQ(lrows); 1357a30f8f8cSSatish Balay count = 0; 1358a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1359a30f8f8cSSatish Balay values = rvalues + i*nmax; 1360a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1361a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1362a30f8f8cSSatish Balay } 1363a30f8f8cSSatish Balay } 1364a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1365a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1366a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1367a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1368a30f8f8cSSatish Balay 1369a30f8f8cSSatish Balay /* actually zap the local rows */ 1370a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1371a30f8f8cSSatish Balay PLogObjectParent(A,istmp); 1372a30f8f8cSSatish Balay 1373a30f8f8cSSatish Balay /* 1374a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1375a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1376a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1377a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1378a30f8f8cSSatish Balay 1379a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1380a30f8f8cSSatish Balay */ 1381a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1382ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1383a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1384a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1385a30f8f8cSSatish Balay } else if (diag) { 1386a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1387a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 1388*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1389a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1390a30f8f8cSSatish Balay } 1391a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1392a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1393a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1394a30f8f8cSSatish Balay } 1395a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1396a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1397a30f8f8cSSatish Balay } else { 1398a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1399a30f8f8cSSatish Balay } 1400a30f8f8cSSatish Balay 1401a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1402a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1403a30f8f8cSSatish Balay 1404a30f8f8cSSatish Balay /* wait on sends */ 1405a30f8f8cSSatish Balay if (nsends) { 1406a30f8f8cSSatish Balay send_status = (MPI_Status*)PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1407a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1408a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1409a30f8f8cSSatish Balay } 1410a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1411a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1412a30f8f8cSSatish Balay 1413a30f8f8cSSatish Balay PetscFunctionReturn(0); 1414a30f8f8cSSatish Balay } 1415a30f8f8cSSatish Balay 1416a30f8f8cSSatish Balay #undef __FUNC__ 1417a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatPrintHelp_MPISBAIJ" 1418a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1419a30f8f8cSSatish Balay { 1420a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1421a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1422a30f8f8cSSatish Balay static int called = 0; 1423a30f8f8cSSatish Balay int ierr; 1424a30f8f8cSSatish Balay 1425a30f8f8cSSatish Balay PetscFunctionBegin; 1426a30f8f8cSSatish Balay if (!a->rank) { 1427a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1428a30f8f8cSSatish Balay } 1429a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1430a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1431a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1432a30f8f8cSSatish Balay PetscFunctionReturn(0); 1433a30f8f8cSSatish Balay } 1434a30f8f8cSSatish Balay 1435a30f8f8cSSatish Balay #undef __FUNC__ 1436a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetUnfactored_MPISBAIJ" 1437a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1438a30f8f8cSSatish Balay { 1439f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1440a30f8f8cSSatish Balay int ierr; 1441a30f8f8cSSatish Balay 1442a30f8f8cSSatish Balay PetscFunctionBegin; 1443a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1444a30f8f8cSSatish Balay PetscFunctionReturn(0); 1445a30f8f8cSSatish Balay } 1446a30f8f8cSSatish Balay 1447a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1448a30f8f8cSSatish Balay 1449a30f8f8cSSatish Balay #undef __FUNC__ 1450a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatEqual_MPISBAIJ" 1451a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1452a30f8f8cSSatish Balay { 1453a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1454a30f8f8cSSatish Balay Mat a,b,c,d; 1455a30f8f8cSSatish Balay PetscTruth flg; 1456a30f8f8cSSatish Balay int ierr; 1457a30f8f8cSSatish Balay 1458a30f8f8cSSatish Balay PetscFunctionBegin; 1459*29bbc08cSBarry Smith if (B->type != MATMPISBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1460a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1461a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1462a30f8f8cSSatish Balay 1463a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1464a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1465a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1466a30f8f8cSSatish Balay } 1467a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1468a30f8f8cSSatish Balay PetscFunctionReturn(0); 1469a30f8f8cSSatish Balay } 1470a30f8f8cSSatish Balay 1471a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1472a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1473a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1474a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1475a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1476a30f8f8cSSatish Balay MatMult_MPISBAIJ, 1477a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1478a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1479a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1488a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1489a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1490a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1491a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1492a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1493a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1494a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1497a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1498a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay 0, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay MatGetSize_MPISBAIJ, 1504a30f8f8cSSatish Balay MatGetLocalSize_MPISBAIJ, 1505a30f8f8cSSatish Balay MatGetOwnershipRange_MPISBAIJ, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay 0, 1513a30f8f8cSSatish Balay 0, 1514a30f8f8cSSatish Balay 0, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1517a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1518a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1519a30f8f8cSSatish Balay 0, 1520a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1521a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay 0, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1533a30f8f8cSSatish Balay 0, 1534a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1535a30f8f8cSSatish Balay 0, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay 0, 1538a30f8f8cSSatish Balay MatGetMaps_Petsc}; 1539a30f8f8cSSatish Balay 1540a30f8f8cSSatish Balay 1541a30f8f8cSSatish Balay EXTERN_C_BEGIN 1542a30f8f8cSSatish Balay #undef __FUNC__ 1543a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonalBlock_MPISBAIJ" 1544a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1545a30f8f8cSSatish Balay { 1546a30f8f8cSSatish Balay PetscFunctionBegin; 1547a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1548a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1549a30f8f8cSSatish Balay PetscFunctionReturn(0); 1550a30f8f8cSSatish Balay } 1551a30f8f8cSSatish Balay EXTERN_C_END 1552a30f8f8cSSatish Balay 1553a30f8f8cSSatish Balay #undef __FUNC__ 1554a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatCreateMPISBAIJ" 1555a30f8f8cSSatish Balay /*@C 1556a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1557a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1558a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1559a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1560a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1561a30f8f8cSSatish Balay 1562a30f8f8cSSatish Balay Collective on MPI_Comm 1563a30f8f8cSSatish Balay 1564a30f8f8cSSatish Balay Input Parameters: 1565a30f8f8cSSatish Balay + comm - MPI communicator 1566a30f8f8cSSatish Balay . bs - size of blockk 1567a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1568a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1569a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1570a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1571a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1572a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1573a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1574a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1575a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1576a30f8f8cSSatish Balay submatrix (same for all local rows) 1577a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 1578a30f8f8cSSatish Balay of the in diagonal portion of the local (possibly different for each block 1579a30f8f8cSSatish Balay row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1580a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1581a30f8f8cSSatish Balay submatrix (same for all local rows). 1582a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1583a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1584a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1585a30f8f8cSSatish Balay 1586a30f8f8cSSatish Balay Output Parameter: 1587a30f8f8cSSatish Balay . A - the matrix 1588a30f8f8cSSatish Balay 1589a30f8f8cSSatish Balay Options Database Keys: 1590a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1591a30f8f8cSSatish Balay block calculations (much slower) 1592a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1593a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1594a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1595a30f8f8cSSatish Balay 1596a30f8f8cSSatish Balay Notes: 1597a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1598a30f8f8cSSatish Balay (possibly both). 1599a30f8f8cSSatish Balay 1600a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1601a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1602a30f8f8cSSatish Balay 1603a30f8f8cSSatish Balay Storage Information: 1604a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1605a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1606a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1607a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1608a30f8f8cSSatish Balay 1609a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1610a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1611a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1612a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1613a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1614a30f8f8cSSatish Balay 1615a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1616a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1617a30f8f8cSSatish Balay 1618a30f8f8cSSatish Balay .vb 1619a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1620a30f8f8cSSatish Balay ------------------- 1621a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1622a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1623a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1624a30f8f8cSSatish Balay ------------------- 1625a30f8f8cSSatish Balay .ve 1626a30f8f8cSSatish Balay 1627a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1628a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 1629a30f8f8cSSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 1630a30f8f8cSSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 1631a30f8f8cSSatish Balay 1632a30f8f8cSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1633a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1634a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1635a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1636a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1637a30f8f8cSSatish Balay matrices. 1638a30f8f8cSSatish Balay 1639a30f8f8cSSatish Balay Level: intermediate 1640a30f8f8cSSatish Balay 1641a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1642a30f8f8cSSatish Balay 1643a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1644a30f8f8cSSatish Balay @*/ 1645a30f8f8cSSatish Balay 1646a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1647a30f8f8cSSatish Balay { 1648a30f8f8cSSatish Balay Mat B; 1649a30f8f8cSSatish Balay Mat_MPISBAIJ *b; 1650f65c83cfSHong Zhang int ierr,i,sum[1],work[1],mbs,Mbs=PETSC_DECIDE,size; 1651a30f8f8cSSatish Balay PetscTruth flag1,flag2,flg; 1652a30f8f8cSSatish Balay 1653a30f8f8cSSatish Balay PetscFunctionBegin; 1654a30f8f8cSSatish Balay if (M != N || m != n){ /* N and n are not used after this */ 1655*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, set M=N and m=n"); 1656a30f8f8cSSatish Balay } 1657a30f8f8cSSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1658a30f8f8cSSatish Balay 1659*29bbc08cSBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1660*29bbc08cSBarry Smith if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than -2: value %d",d_nz); 1661*29bbc08cSBarry Smith if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than -2: value %d",o_nz); 1662a30f8f8cSSatish Balay if (d_nnz) { 1663a30f8f8cSSatish Balay for (i=0; i<m/bs; i++) { 1664*29bbc08cSBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1665a30f8f8cSSatish Balay } 1666a30f8f8cSSatish Balay } 1667a30f8f8cSSatish Balay if (o_nnz) { 1668a30f8f8cSSatish Balay for (i=0; i<m/bs; i++) { 1669*29bbc08cSBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1670a30f8f8cSSatish Balay } 1671a30f8f8cSSatish Balay } 1672a30f8f8cSSatish Balay 1673a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1674a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_mpisbaij",&flag1);CHKERRQ(ierr); 1675a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_mpi",&flag2);CHKERRQ(ierr); 1676a30f8f8cSSatish Balay if (!flag1 && !flag2 && size == 1) { 1677a30f8f8cSSatish Balay if (M == PETSC_DECIDE) M = m; 1678a30f8f8cSSatish Balay ierr = MatCreateSeqSBAIJ(comm,bs,M,M,d_nz,d_nnz,A);CHKERRQ(ierr); 1679a30f8f8cSSatish Balay PetscFunctionReturn(0); 1680a30f8f8cSSatish Balay } 1681a30f8f8cSSatish Balay 1682a30f8f8cSSatish Balay *A = 0; 1683a30f8f8cSSatish Balay PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPISBAIJ,"Mat",comm,MatDestroy,MatView); 1684a30f8f8cSSatish Balay PLogObjectCreate(B); 1685a30f8f8cSSatish Balay B->data = (void*)(b = PetscNew(Mat_MPISBAIJ));CHKPTRQ(b); 1686a30f8f8cSSatish Balay ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1687a30f8f8cSSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1688a30f8f8cSSatish Balay 1689a30f8f8cSSatish Balay B->ops->destroy = MatDestroy_MPISBAIJ; 1690a30f8f8cSSatish Balay B->ops->view = MatView_MPISBAIJ; 1691a30f8f8cSSatish Balay B->mapping = 0; 1692a30f8f8cSSatish Balay B->factor = 0; 1693a30f8f8cSSatish Balay B->assembled = PETSC_FALSE; 1694a30f8f8cSSatish Balay 1695a30f8f8cSSatish Balay B->insertmode = NOT_SET_VALUES; 1696a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&b->rank);CHKERRQ(ierr); 1697a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&b->size);CHKERRQ(ierr); 1698a30f8f8cSSatish Balay 1699a30f8f8cSSatish Balay if (m == PETSC_DECIDE && (d_nnz || o_nnz)) { 1700*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1701a30f8f8cSSatish Balay } 1702a30f8f8cSSatish Balay if (M == PETSC_DECIDE && m == PETSC_DECIDE) { 1703*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"either M or m should be specified"); 1704a30f8f8cSSatish Balay } 1705a30f8f8cSSatish Balay if (M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1706a30f8f8cSSatish Balay 1707a30f8f8cSSatish Balay if (M == PETSC_DECIDE) { 1708a30f8f8cSSatish Balay work[0] = m; mbs = m/bs; 1709a30f8f8cSSatish Balay ierr = MPI_Allreduce(work,sum,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 1710a30f8f8cSSatish Balay M = sum[0]; Mbs = M/bs; 1711a30f8f8cSSatish Balay } else { /* M is specified */ 1712a30f8f8cSSatish Balay Mbs = M/bs; 1713*29bbc08cSBarry Smith if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,"No of global rows must be divisible by blocksize"); 1714a30f8f8cSSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 1715a30f8f8cSSatish Balay m = mbs*bs; 1716a30f8f8cSSatish Balay } 1717a30f8f8cSSatish Balay 1718a30f8f8cSSatish Balay if (mbs*bs != m) { 1719*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"No of local rows/cols must be divisible by blocksize"); 1720a30f8f8cSSatish Balay } 1721a30f8f8cSSatish Balay 1722a30f8f8cSSatish Balay b->m = m; B->m = m; 1723a30f8f8cSSatish Balay b->n = m; B->n = m; 1724a30f8f8cSSatish Balay b->N = M; B->N = M; 1725a30f8f8cSSatish Balay b->M = M; 1726a30f8f8cSSatish Balay B->M = M; 1727a30f8f8cSSatish Balay b->bs = bs; 1728a30f8f8cSSatish Balay b->bs2 = bs*bs; 1729a30f8f8cSSatish Balay b->mbs = mbs; 1730a30f8f8cSSatish Balay b->nbs = mbs; 1731a30f8f8cSSatish Balay b->Mbs = Mbs; 1732a30f8f8cSSatish Balay b->Nbs = Mbs; 1733a30f8f8cSSatish Balay 1734a30f8f8cSSatish Balay /* the information in the maps duplicates the information computed below, eventually 1735a30f8f8cSSatish Balay we should remove the duplicate information that is not contained in the maps */ 1736a30f8f8cSSatish Balay ierr = MapCreateMPI(B->comm,m,M,&B->rmap);CHKERRQ(ierr); 1737a30f8f8cSSatish Balay ierr = MapCreateMPI(B->comm,m,M,&B->cmap);CHKERRQ(ierr); 1738a30f8f8cSSatish Balay 1739a30f8f8cSSatish Balay /* build local table of row and column ownerships */ 1740a30f8f8cSSatish Balay b->rowners = (int*)PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners); 1741a30f8f8cSSatish Balay PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1742a30f8f8cSSatish Balay b->cowners = b->rowners + b->size + 2; 1743a30f8f8cSSatish Balay b->rowners_bs = b->cowners + b->size + 2; 1744a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1745a30f8f8cSSatish Balay b->rowners[0] = 0; 1746a30f8f8cSSatish Balay for (i=2; i<=b->size; i++) { 1747a30f8f8cSSatish Balay b->rowners[i] += b->rowners[i-1]; 1748a30f8f8cSSatish Balay } 1749a30f8f8cSSatish Balay for (i=0; i<=b->size; i++) { 1750a30f8f8cSSatish Balay b->rowners_bs[i] = b->rowners[i]*bs; 1751a30f8f8cSSatish Balay } 1752a30f8f8cSSatish Balay b->rstart = b->rowners[b->rank]; 1753a30f8f8cSSatish Balay b->rend = b->rowners[b->rank+1]; 1754a30f8f8cSSatish Balay b->rstart_bs = b->rstart * bs; 1755a30f8f8cSSatish Balay b->rend_bs = b->rend * bs; 1756a30f8f8cSSatish Balay 1757a30f8f8cSSatish Balay b->cstart = b->rstart; 1758a30f8f8cSSatish Balay b->cend = b->rend; 1759a30f8f8cSSatish Balay b->cstart_bs = b->cstart * bs; 1760a30f8f8cSSatish Balay b->cend_bs = b->cend * bs; 1761a30f8f8cSSatish Balay 1762a30f8f8cSSatish Balay 1763a30f8f8cSSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 1764a30f8f8cSSatish Balay ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,m,m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1765a30f8f8cSSatish Balay PLogObjectParent(B,b->A); 1766a30f8f8cSSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 1767a30f8f8cSSatish Balay ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1768a30f8f8cSSatish Balay PLogObjectParent(B,b->B); 1769a30f8f8cSSatish Balay 1770a30f8f8cSSatish Balay /* build cache for off array entries formed */ 1771a30f8f8cSSatish Balay ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1772a30f8f8cSSatish Balay ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1773a30f8f8cSSatish Balay b->donotstash = PETSC_FALSE; 1774a30f8f8cSSatish Balay b->colmap = PETSC_NULL; 1775a30f8f8cSSatish Balay b->garray = PETSC_NULL; 1776a30f8f8cSSatish Balay b->roworiented = PETSC_TRUE; 1777a30f8f8cSSatish Balay 1778a30f8f8cSSatish Balay #if defined(PEYSC_USE_MAT_SINGLE) 1779a30f8f8cSSatish Balay /* stuff for MatSetValues_XXX in single precision */ 1780a30f8f8cSSatish Balay b->lensetvalues = 0; 1781a30f8f8cSSatish Balay b->setvaluescopy = PETSC_NULL; 1782a30f8f8cSSatish Balay #endif 1783a30f8f8cSSatish Balay 1784a30f8f8cSSatish Balay /* stuff used in block assembly */ 1785a30f8f8cSSatish Balay b->barray = 0; 1786a30f8f8cSSatish Balay 1787a30f8f8cSSatish Balay /* stuff used for matrix vector multiply */ 1788a30f8f8cSSatish Balay b->lvec = 0; 1789a30f8f8cSSatish Balay b->Mvctx = 0; 1790a30f8f8cSSatish Balay 1791a30f8f8cSSatish Balay /* stuff for MatGetRow() */ 1792a30f8f8cSSatish Balay b->rowindices = 0; 1793a30f8f8cSSatish Balay b->rowvalues = 0; 1794a30f8f8cSSatish Balay b->getrowactive = PETSC_FALSE; 1795a30f8f8cSSatish Balay 1796a30f8f8cSSatish Balay /* hash table stuff */ 1797a30f8f8cSSatish Balay b->ht = 0; 1798a30f8f8cSSatish Balay b->hd = 0; 1799a30f8f8cSSatish Balay b->ht_size = 0; 1800a30f8f8cSSatish Balay b->ht_flag = PETSC_FALSE; 1801a30f8f8cSSatish Balay b->ht_fact = 0; 1802a30f8f8cSSatish Balay b->ht_total_ct = 0; 1803a30f8f8cSSatish Balay b->ht_insert_ct = 0; 1804a30f8f8cSSatish Balay 1805a30f8f8cSSatish Balay *A = B; 1806a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1807a30f8f8cSSatish Balay if (flg) { 1808a30f8f8cSSatish Balay double fact = 1.39; 1809a30f8f8cSSatish Balay ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1810a30f8f8cSSatish Balay ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1811a30f8f8cSSatish Balay if (fact <= 1.0) fact = 1.39; 1812a30f8f8cSSatish Balay ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1813a30f8f8cSSatish Balay PLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1814a30f8f8cSSatish Balay } 1815a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1816a30f8f8cSSatish Balay "MatStoreValues_MPISBAIJ", 1817a30f8f8cSSatish Balay MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1818a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1819a30f8f8cSSatish Balay "MatRetrieveValues_MPISBAIJ", 1820a30f8f8cSSatish Balay MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1821a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1822a30f8f8cSSatish Balay "MatGetDiagonalBlock_MPISBAIJ", 1823a30f8f8cSSatish Balay MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1824a30f8f8cSSatish Balay PetscFunctionReturn(0); 1825a30f8f8cSSatish Balay } 1826a30f8f8cSSatish Balay 1827a30f8f8cSSatish Balay 1828a30f8f8cSSatish Balay #undef __FUNC__ 1829a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDuplicate_MPISBAIJ" 1830a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1831a30f8f8cSSatish Balay { 1832a30f8f8cSSatish Balay Mat mat; 1833a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1834a30f8f8cSSatish Balay int ierr,len=0; 1835a30f8f8cSSatish Balay PetscTruth flg; 1836a30f8f8cSSatish Balay 1837a30f8f8cSSatish Balay PetscFunctionBegin; 1838a30f8f8cSSatish Balay *newmat = 0; 1839a30f8f8cSSatish Balay PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPISBAIJ,"Mat",matin->comm,MatDestroy,MatView); 1840a30f8f8cSSatish Balay PLogObjectCreate(mat); 1841a30f8f8cSSatish Balay mat->data = (void*)(a = PetscNew(Mat_MPISBAIJ));CHKPTRQ(a); 1842a30f8f8cSSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1843a30f8f8cSSatish Balay mat->ops->destroy = MatDestroy_MPISBAIJ; 1844a30f8f8cSSatish Balay mat->ops->view = MatView_MPISBAIJ; 1845a30f8f8cSSatish Balay mat->factor = matin->factor; 1846a30f8f8cSSatish Balay mat->assembled = PETSC_TRUE; 1847a30f8f8cSSatish Balay mat->insertmode = NOT_SET_VALUES; 1848a30f8f8cSSatish Balay 1849a30f8f8cSSatish Balay a->m = mat->m = oldmat->m; 1850a30f8f8cSSatish Balay a->n = mat->n = oldmat->n; 1851a30f8f8cSSatish Balay a->M = mat->M = oldmat->M; 1852a30f8f8cSSatish Balay a->N = mat->N = oldmat->N; 1853a30f8f8cSSatish Balay 1854a30f8f8cSSatish Balay a->bs = oldmat->bs; 1855a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1856a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1857a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1858a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1859a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1860a30f8f8cSSatish Balay 1861a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1862a30f8f8cSSatish Balay a->rend = oldmat->rend; 1863a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1864a30f8f8cSSatish Balay a->cend = oldmat->cend; 1865a30f8f8cSSatish Balay a->size = oldmat->size; 1866a30f8f8cSSatish Balay a->rank = oldmat->rank; 1867a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1868a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1869a30f8f8cSSatish Balay a->rowindices = 0; 1870a30f8f8cSSatish Balay a->rowvalues = 0; 1871a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1872a30f8f8cSSatish Balay a->barray = 0; 1873a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1874a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1875a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1876a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1877a30f8f8cSSatish Balay 1878a30f8f8cSSatish Balay /* hash table stuff */ 1879a30f8f8cSSatish Balay a->ht = 0; 1880a30f8f8cSSatish Balay a->hd = 0; 1881a30f8f8cSSatish Balay a->ht_size = 0; 1882a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1883a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1884a30f8f8cSSatish Balay a->ht_total_ct = 0; 1885a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1886a30f8f8cSSatish Balay 1887a30f8f8cSSatish Balay 1888a30f8f8cSSatish Balay a->rowners = (int*)PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners); 1889a30f8f8cSSatish Balay PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1890a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 1891a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 1892a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 1893a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1894a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 1895a30f8f8cSSatish Balay if (oldmat->colmap) { 1896a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1897a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1898a30f8f8cSSatish Balay #else 1899a30f8f8cSSatish Balay a->colmap = (int*)PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 1900a30f8f8cSSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 1901a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 1902a30f8f8cSSatish Balay #endif 1903a30f8f8cSSatish Balay } else a->colmap = 0; 1904a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 1905a30f8f8cSSatish Balay a->garray = (int*)PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray); 1906a30f8f8cSSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 1907a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 1908a30f8f8cSSatish Balay } else a->garray = 0; 1909a30f8f8cSSatish Balay 1910a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1911a30f8f8cSSatish Balay PLogObjectParent(mat,a->lvec); 1912a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1913a30f8f8cSSatish Balay 1914a30f8f8cSSatish Balay PLogObjectParent(mat,a->Mvctx); 1915a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1916a30f8f8cSSatish Balay PLogObjectParent(mat,a->A); 1917a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1918a30f8f8cSSatish Balay PLogObjectParent(mat,a->B); 1919a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr); 1920a30f8f8cSSatish Balay ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1921a30f8f8cSSatish Balay if (flg) { 1922a30f8f8cSSatish Balay ierr = MatPrintHelp(mat);CHKERRQ(ierr); 1923a30f8f8cSSatish Balay } 1924a30f8f8cSSatish Balay *newmat = mat; 1925a30f8f8cSSatish Balay PetscFunctionReturn(0); 1926a30f8f8cSSatish Balay } 1927a30f8f8cSSatish Balay 1928a30f8f8cSSatish Balay #include "petscsys.h" 1929a30f8f8cSSatish Balay 1930a30f8f8cSSatish Balay #undef __FUNC__ 1931a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatLoad_MPISBAIJ" 1932a30f8f8cSSatish Balay int MatLoad_MPISBAIJ(Viewer viewer,MatType type,Mat *newmat) 1933a30f8f8cSSatish Balay { 1934a30f8f8cSSatish Balay Mat A; 1935a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 1936a30f8f8cSSatish Balay Scalar *vals,*buf; 1937a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1938a30f8f8cSSatish Balay MPI_Status status; 1939a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 1940a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 1941a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 1942a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 1943a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 1944a30f8f8cSSatish Balay 1945a30f8f8cSSatish Balay PetscFunctionBegin; 1946a30f8f8cSSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1947a30f8f8cSSatish Balay 1948a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1949a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1950a30f8f8cSSatish Balay if (!rank) { 1951a30f8f8cSSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1952a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1953*29bbc08cSBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 1954a30f8f8cSSatish Balay if (header[3] < 0) { 1955*29bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 1956a30f8f8cSSatish Balay } 1957a30f8f8cSSatish Balay } 1958a30f8f8cSSatish Balay 1959a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 1960a30f8f8cSSatish Balay M = header[1]; N = header[2]; 1961a30f8f8cSSatish Balay 1962*29bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 1963a30f8f8cSSatish Balay 1964a30f8f8cSSatish Balay /* 1965a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 1966a30f8f8cSSatish Balay divisible by the blocksize 1967a30f8f8cSSatish Balay */ 1968a30f8f8cSSatish Balay Mbs = M/bs; 1969a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 1970a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 1971a30f8f8cSSatish Balay else Mbs++; 1972a30f8f8cSSatish Balay if (extra_rows &&!rank) { 1973a30f8f8cSSatish Balay PLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 1974a30f8f8cSSatish Balay } 1975a30f8f8cSSatish Balay 1976a30f8f8cSSatish Balay /* determine ownership of all rows */ 1977a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 1978a30f8f8cSSatish Balay m = mbs * bs; 1979a30f8f8cSSatish Balay rowners = (int*)PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners); 1980a30f8f8cSSatish Balay browners = rowners + size + 1; 1981a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1982a30f8f8cSSatish Balay rowners[0] = 0; 1983a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 1984a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 1985a30f8f8cSSatish Balay rstart = rowners[rank]; 1986a30f8f8cSSatish Balay rend = rowners[rank+1]; 1987a30f8f8cSSatish Balay 1988a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 1989a30f8f8cSSatish Balay locrowlens = (int*)PetscMalloc((rend-rstart)*bs*sizeof(int));CHKPTRQ(locrowlens); 1990a30f8f8cSSatish Balay if (!rank) { 1991a30f8f8cSSatish Balay rowlengths = (int*)PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths); 1992a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1993a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 1994a30f8f8cSSatish Balay sndcounts = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(sndcounts); 1995a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 1996a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 1997a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 1998a30f8f8cSSatish Balay } else { 1999a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2000a30f8f8cSSatish Balay } 2001a30f8f8cSSatish Balay 20020222edb1SHong Zhang if (!rank) { /* procs[0] */ 2003a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 2004a30f8f8cSSatish Balay procsnz = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(procsnz); 2005a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2006a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2007a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2008a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2009a30f8f8cSSatish Balay } 2010a30f8f8cSSatish Balay } 2011a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2012a30f8f8cSSatish Balay 2013a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2014a30f8f8cSSatish Balay maxnz = 0; 2015a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2016a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2017a30f8f8cSSatish Balay } 2018a30f8f8cSSatish Balay cols = (int*)PetscMalloc(maxnz*sizeof(int));CHKPTRQ(cols); 2019a30f8f8cSSatish Balay 2020a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2021a30f8f8cSSatish Balay nz = procsnz[0]; 2022a30f8f8cSSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 2023a30f8f8cSSatish Balay mycols = ibuf; 2024a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2025a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2026a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2027a30f8f8cSSatish Balay 2028a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2029a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2030a30f8f8cSSatish Balay nz = procsnz[i]; 2031a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2032a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2033a30f8f8cSSatish Balay } 2034a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2035a30f8f8cSSatish Balay if (size != 1) { 2036a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2037a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2038a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2039a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2040a30f8f8cSSatish Balay } 2041a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20420222edb1SHong Zhang } else { /* procs[i], i>0 */ 2043a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2044a30f8f8cSSatish Balay nz = 0; 2045a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2046a30f8f8cSSatish Balay nz += locrowlens[i]; 2047a30f8f8cSSatish Balay } 2048a30f8f8cSSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 2049a30f8f8cSSatish Balay mycols = ibuf; 2050a30f8f8cSSatish Balay /* receive message of column indices*/ 2051a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2052a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 2053*29bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2054a30f8f8cSSatish Balay } 2055a30f8f8cSSatish Balay 2056a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2057a30f8f8cSSatish Balay dlens = (int*)PetscMalloc(2*(rend-rstart+1)*sizeof(int));CHKPTRQ(dlens); 2058a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 2059a30f8f8cSSatish Balay mask = (int*)PetscMalloc(3*Mbs*sizeof(int));CHKPTRQ(mask); 2060a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2061a30f8f8cSSatish Balay masked1 = mask + Mbs; 2062a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2063a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2064a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2065a30f8f8cSSatish Balay dcount = 0; 2066a30f8f8cSSatish Balay odcount = 0; 2067a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2068a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2069a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 20700222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2071a30f8f8cSSatish Balay if (!mask[tmp]) { 2072a30f8f8cSSatish Balay mask[tmp] = 1; 20730222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 20740222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2075a30f8f8cSSatish Balay } 2076a30f8f8cSSatish Balay } 2077a30f8f8cSSatish Balay rowcount++; 2078a30f8f8cSSatish Balay } 2079a30f8f8cSSatish Balay 20800222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 20810222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2082a30f8f8cSSatish Balay 2083a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2084a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2085a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2086a30f8f8cSSatish Balay } 2087a30f8f8cSSatish Balay 2088a30f8f8cSSatish Balay /* create our matrix */ 20897e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2090bfe19f1aSHong Zhang CHKERRQ(ierr); 2091a30f8f8cSSatish Balay A = *newmat; 2092a30f8f8cSSatish Balay MatSetOption(A,MAT_COLUMNS_SORTED); 2093a30f8f8cSSatish Balay 2094a30f8f8cSSatish Balay if (!rank) { 2095a30f8f8cSSatish Balay buf = (Scalar*)PetscMalloc(maxnz*sizeof(Scalar));CHKPTRQ(buf); 2096a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2097a30f8f8cSSatish Balay nz = procsnz[0]; 2098a30f8f8cSSatish Balay vals = buf; 2099a30f8f8cSSatish Balay mycols = ibuf; 2100a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2101a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2102a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2103a30f8f8cSSatish Balay 2104a30f8f8cSSatish Balay /* insert into matrix */ 2105a30f8f8cSSatish Balay jj = rstart*bs; 2106a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21077e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2108a30f8f8cSSatish Balay mycols += locrowlens[i]; 2109a30f8f8cSSatish Balay vals += locrowlens[i]; 2110a30f8f8cSSatish Balay jj++; 2111a30f8f8cSSatish Balay } 21127e06b45fSHong Zhang 2113a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2114a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2115a30f8f8cSSatish Balay nz = procsnz[i]; 2116a30f8f8cSSatish Balay vals = buf; 2117a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2118a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2119a30f8f8cSSatish Balay } 2120a30f8f8cSSatish Balay /* the last proc */ 2121a30f8f8cSSatish Balay if (size != 1){ 2122a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2123a30f8f8cSSatish Balay vals = buf; 2124a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2125a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2126a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2127a30f8f8cSSatish Balay } 2128a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21297e06b45fSHong Zhang 2130a30f8f8cSSatish Balay } else { 2131a30f8f8cSSatish Balay /* receive numeric values */ 2132a30f8f8cSSatish Balay buf = (Scalar*)PetscMalloc(nz*sizeof(Scalar));CHKPTRQ(buf); 2133a30f8f8cSSatish Balay 2134a30f8f8cSSatish Balay /* receive message of values*/ 2135a30f8f8cSSatish Balay vals = buf; 2136a30f8f8cSSatish Balay mycols = ibuf; 2137a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2138a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2139*29bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2140a30f8f8cSSatish Balay 2141a30f8f8cSSatish Balay /* insert into matrix */ 2142a30f8f8cSSatish Balay jj = rstart*bs; 2143a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2144a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2145a30f8f8cSSatish Balay mycols += locrowlens[i]; 2146a30f8f8cSSatish Balay vals += locrowlens[i]; 2147a30f8f8cSSatish Balay jj++; 2148a30f8f8cSSatish Balay } 2149a30f8f8cSSatish Balay } 21507e06b45fSHong Zhang 2151a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2152a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2155a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2157a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2158a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2159a30f8f8cSSatish Balay PetscFunctionReturn(0); 2160a30f8f8cSSatish Balay } 2161a30f8f8cSSatish Balay 2162a30f8f8cSSatish Balay #undef __FUNC__ 2163a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMPISBAIJSetHashTableFactor" 2164a30f8f8cSSatish Balay /*@ 2165a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2166a30f8f8cSSatish Balay 2167a30f8f8cSSatish Balay Input Parameters: 2168a30f8f8cSSatish Balay . mat - the matrix 2169a30f8f8cSSatish Balay . fact - factor 2170a30f8f8cSSatish Balay 2171a30f8f8cSSatish Balay Collective on Mat 2172a30f8f8cSSatish Balay 2173a30f8f8cSSatish Balay Level: advanced 2174a30f8f8cSSatish Balay 2175a30f8f8cSSatish Balay Notes: 2176a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2179a30f8f8cSSatish Balay 2180a30f8f8cSSatish Balay .seealso: MatSetOption() 2181a30f8f8cSSatish Balay @*/ 2182a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2183a30f8f8cSSatish Balay { 2184a30f8f8cSSatish Balay PetscFunctionBegin; 2185*29bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 218696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2187a30f8f8cSSatish Balay } 2188