xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 2b82e772c8de6da51d6c140e41a7bf4d4be13c31)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
909573ac7SBarry Smith extern PetscErrorCode DisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
267087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
417087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
55a30f8f8cSSatish Balay { \
56a30f8f8cSSatish Balay  \
57a30f8f8cSSatish Balay     brow = row/bs;  \
58a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
59a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
60a30f8f8cSSatish Balay       bcol = col/bs; \
61a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
62a30f8f8cSSatish Balay       low = 0; high = nrow; \
63a30f8f8cSSatish Balay       while (high-low > 3) { \
64a30f8f8cSSatish Balay         t = (low+high)/2; \
65a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
66a30f8f8cSSatish Balay         else              low  = t; \
67a30f8f8cSSatish Balay       } \
68a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
69a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
70a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
71a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
72a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
73a30f8f8cSSatish Balay           else                    *bap  = value;  \
74a30f8f8cSSatish Balay           goto a_noinsert; \
75a30f8f8cSSatish Balay         } \
76a30f8f8cSSatish Balay       } \
77a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
78e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
79fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
80a30f8f8cSSatish Balay       N = nrow++ - 1;  \
81a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
82a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
83a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
84a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
85a30f8f8cSSatish Balay       } \
86a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
87a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
88a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
89a30f8f8cSSatish Balay       a_noinsert:; \
90a30f8f8cSSatish Balay     ailen[brow] = nrow; \
91a30f8f8cSSatish Balay }
92e5e170daSBarry Smith 
93a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
94a30f8f8cSSatish Balay { \
95a30f8f8cSSatish Balay     brow = row/bs;  \
96a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
97a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
98a30f8f8cSSatish Balay       bcol = col/bs; \
99a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
100a30f8f8cSSatish Balay       low = 0; high = nrow; \
101a30f8f8cSSatish Balay       while (high-low > 3) { \
102a30f8f8cSSatish Balay         t = (low+high)/2; \
103a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
104a30f8f8cSSatish Balay         else              low  = t; \
105a30f8f8cSSatish Balay       } \
106a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
107a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
108a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
109a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
110a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
111a30f8f8cSSatish Balay           else                    *bap  = value;  \
112a30f8f8cSSatish Balay           goto b_noinsert; \
113a30f8f8cSSatish Balay         } \
114a30f8f8cSSatish Balay       } \
115a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
116e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
117fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
118a30f8f8cSSatish Balay       N = nrow++ - 1;  \
119a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
120a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
121a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
122a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay       } \
124a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
125a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
126a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
127a30f8f8cSSatish Balay       b_noinsert:; \
128a30f8f8cSSatish Balay     bilen[brow] = nrow; \
129a30f8f8cSSatish Balay }
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
132a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
133a30f8f8cSSatish Balay */
1344a2ae208SSatish Balay #undef __FUNCT__
135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
137a30f8f8cSSatish Balay {
138a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
139a30f8f8cSSatish Balay   MatScalar      value;
140ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
1421302d50aSBarry Smith   PetscInt       i,j,row,col;
143d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
144d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
145d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   /* Some Variables required in the macro */
148a30f8f8cSSatish Balay   Mat            A = baij->A;
149a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1501302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
151a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
152a30f8f8cSSatish Balay 
153a30f8f8cSSatish Balay   Mat            B = baij->B;
154a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1551302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
156a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
157a30f8f8cSSatish Balay 
1581302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1591302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
160a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
161a30f8f8cSSatish Balay 
162a30f8f8cSSatish Balay   /* for stash */
163910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
164910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
16771fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
168a30f8f8cSSatish Balay   if (!baij->donotstash){
16959ffdab8SBarry Smith     if (n > baij->n_loc) {
17059ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17159ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17259ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       baij->n_loc = n;
17559ffdab8SBarry Smith     }
17659ffdab8SBarry Smith     in_loc = baij->in_loc;
17759ffdab8SBarry Smith     v_loc  = baij->v_loc;
178a30f8f8cSSatish Balay   }
179a30f8f8cSSatish Balay 
180a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
181a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
183e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
184a30f8f8cSSatish Balay #endif
185a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
186a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
187a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18801b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
18901b2bd88SHong Zhang           if (a->ignore_ltriangular){
19001b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19101b2bd88SHong Zhang           } else {
192e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19301b2bd88SHong Zhang           }
19401b2bd88SHong Zhang         }
195a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
196a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
197a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
198a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
199a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
200a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
201a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
202a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
204cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
205a30f8f8cSSatish Balay #endif
206a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
207a30f8f8cSSatish Balay           if (mat->was_assembled) {
208a30f8f8cSSatish Balay             if (!baij->colmap) {
209653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
210a30f8f8cSSatish Balay             }
211a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
212a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21371730473SSatish Balay             col  = col - 1;
214a30f8f8cSSatish Balay #else
21571730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
216a30f8f8cSSatish Balay #endif
217a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
218a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
219a30f8f8cSSatish Balay               col =  in[j];
220a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
221a30f8f8cSSatish Balay               B = baij->B;
222a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
223a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
224a30f8f8cSSatish Balay               ba=b->a;
22571730473SSatish Balay             } else col += in[j]%bs;
226a30f8f8cSSatish Balay           } else col = in[j];
227a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
228a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
229a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
230a30f8f8cSSatish Balay         }
231a30f8f8cSSatish Balay       }
232a30f8f8cSSatish Balay     } else {  /* off processor entry */
2334cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
234a30f8f8cSSatish Balay       if (!baij->donotstash) {
235a30f8f8cSSatish Balay         n_loc = 0;
236a30f8f8cSSatish Balay         for (j=0; j<n; j++){
237f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
238a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
239a30f8f8cSSatish Balay           if (roworiented) {
240a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
241a30f8f8cSSatish Balay           } else {
242a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
243a30f8f8cSSatish Balay           }
244a30f8f8cSSatish Balay           n_loc++;
245a30f8f8cSSatish Balay         }
246b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
247a30f8f8cSSatish Balay       }
248a30f8f8cSSatish Balay     }
249a30f8f8cSSatish Balay   }
250a30f8f8cSSatish Balay   PetscFunctionReturn(0);
251a30f8f8cSSatish Balay }
252a30f8f8cSSatish Balay 
2534a2ae208SSatish Balay #undef __FUNCT__
254dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
255dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
256a30f8f8cSSatish Balay {
2570880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
258f15d580aSBarry Smith   const MatScalar *value;
259f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
260ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
261dfbe8321SBarry Smith   PetscErrorCode  ierr;
262899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
263899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
264d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2650880e062SHong Zhang 
266a30f8f8cSSatish Balay   PetscFunctionBegin;
2670880e062SHong Zhang   if(!barray) {
2680880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2690880e062SHong Zhang     baij->barray = barray;
2700880e062SHong Zhang   }
2710880e062SHong Zhang 
2720880e062SHong Zhang   if (roworiented) {
2730880e062SHong Zhang     stepval = (n-1)*bs;
2740880e062SHong Zhang   } else {
2750880e062SHong Zhang     stepval = (m-1)*bs;
2760880e062SHong Zhang   }
2770880e062SHong Zhang   for (i=0; i<m; i++) {
2780880e062SHong Zhang     if (im[i] < 0) continue;
2792515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
280e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2810880e062SHong Zhang #endif
2820880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2830880e062SHong Zhang       row = im[i] - rstart;
2840880e062SHong Zhang       for (j=0; j<n; j++) {
285f3f98c53SJed Brown         if (im[i] > in[j]) {
286f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
287e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
288f3f98c53SJed Brown         }
2890880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2900880e062SHong Zhang         if ((roworiented) && (n == 1)) {
291f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2920880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
293f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2940880e062SHong Zhang         } else { /* Here a copy is required */
2950880e062SHong Zhang           if (roworiented) {
2960880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2970880e062SHong Zhang           } else {
2980880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2990880e062SHong Zhang           }
3000880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3010880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3020880e062SHong Zhang               *barray++  = *value++;
3030880e062SHong Zhang             }
3040880e062SHong Zhang           }
3050880e062SHong Zhang           barray -=bs2;
3060880e062SHong Zhang         }
3070880e062SHong Zhang 
3080880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3090880e062SHong Zhang           col  = in[j] - cstart;
3100880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3110880e062SHong Zhang         }
3120880e062SHong Zhang         else if (in[j] < 0) continue;
3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
314cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3150880e062SHong Zhang #endif
3160880e062SHong Zhang         else {
3170880e062SHong Zhang           if (mat->was_assembled) {
3180880e062SHong Zhang             if (!baij->colmap) {
319653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3200880e062SHong Zhang             }
3210880e062SHong Zhang 
3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3230880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3241302d50aSBarry Smith             { PetscInt data;
3250880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
326e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang             }
3280880e062SHong Zhang #else
329e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3300880e062SHong Zhang #endif
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3330880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3340880e062SHong Zhang             col  = (col - 1)/bs;
3350880e062SHong Zhang #else
3360880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3370880e062SHong Zhang #endif
3380880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3390880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3400880e062SHong Zhang               col =  in[j];
3410880e062SHong Zhang             }
3420880e062SHong Zhang           }
3430880e062SHong Zhang           else col = in[j];
344e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3450880e062SHong Zhang         }
3460880e062SHong Zhang       }
3470880e062SHong Zhang     } else {
3484cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3490880e062SHong Zhang       if (!baij->donotstash) {
3500880e062SHong Zhang         if (roworiented) {
3510880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3520880e062SHong Zhang         } else {
3530880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3540880e062SHong Zhang         }
3550880e062SHong Zhang       }
3560880e062SHong Zhang     }
3570880e062SHong Zhang   }
3580880e062SHong Zhang   PetscFunctionReturn(0);
359a30f8f8cSSatish Balay }
360a30f8f8cSSatish Balay 
3614a2ae208SSatish Balay #undef __FUNCT__
3624a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3631302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
364a30f8f8cSSatish Balay {
365f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3666849ba73SBarry Smith   PetscErrorCode ierr;
367d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
368d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
369a30f8f8cSSatish Balay 
370a30f8f8cSSatish Balay   PetscFunctionBegin;
371a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
372e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
373e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
374a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
375a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
376a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
377e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
378e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
379a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
380a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
381c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
382a30f8f8cSSatish Balay         } else {
383a30f8f8cSSatish Balay           if (!baij->colmap) {
384653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
385a30f8f8cSSatish Balay           }
386a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
387a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
388a30f8f8cSSatish Balay           data --;
389a30f8f8cSSatish Balay #else
390a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
391a30f8f8cSSatish Balay #endif
392a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
393a30f8f8cSSatish Balay           else {
394a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
395e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
396a30f8f8cSSatish Balay           }
397a30f8f8cSSatish Balay         }
398a30f8f8cSSatish Balay       }
399a30f8f8cSSatish Balay     } else {
400e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
401a30f8f8cSSatish Balay     }
402a30f8f8cSSatish Balay   }
403a30f8f8cSSatish Balay  PetscFunctionReturn(0);
404a30f8f8cSSatish Balay }
405a30f8f8cSSatish Balay 
4064a2ae208SSatish Balay #undef __FUNCT__
4074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
408dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
409a30f8f8cSSatish Balay {
410a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
411dfbe8321SBarry Smith   PetscErrorCode ierr;
412a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
413a30f8f8cSSatish Balay 
414a30f8f8cSSatish Balay   PetscFunctionBegin;
415a30f8f8cSSatish Balay   if (baij->size == 1) {
416a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
417a30f8f8cSSatish Balay   } else {
418a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
419f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
422a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
423a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
424d9822059SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4258f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2*sum[1]);
426a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4270b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4280b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4290b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4300b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
431899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
432d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4330b8dc8d2SHong Zhang       MatScalar    *v;
4340b8dc8d2SHong Zhang 
43574ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
436d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4370b8dc8d2SHong Zhang       /* Amat */
4380b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4390b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4400b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4410b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4420b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4430b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4440b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4450b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4460b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4470b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4480b8dc8d2SHong Zhang               /* non-diagonal block */
4490b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4500b8dc8d2SHong Zhang             }
4510b8dc8d2SHong Zhang           }
4520b8dc8d2SHong Zhang         }
4530b8dc8d2SHong Zhang       }
4540b8dc8d2SHong Zhang       /* Bmat */
4550b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4560b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4570b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4580b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4590b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4600b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4610b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4620b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4630b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4640b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4650b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4660b8dc8d2SHong Zhang             }
4670b8dc8d2SHong Zhang           }
4680b8dc8d2SHong Zhang         }
4690b8dc8d2SHong Zhang       }
470d9822059SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4710b8dc8d2SHong Zhang       *norm = 0.0;
472d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4730b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4740b8dc8d2SHong Zhang       }
47574ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
476a30f8f8cSSatish Balay     } else {
477e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
478a30f8f8cSSatish Balay     }
479a30f8f8cSSatish Balay   }
480a30f8f8cSSatish Balay   PetscFunctionReturn(0);
481a30f8f8cSSatish Balay }
482a30f8f8cSSatish Balay 
4834a2ae208SSatish Balay #undef __FUNCT__
4844a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
485dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
486a30f8f8cSSatish Balay {
487a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
488dfbe8321SBarry Smith   PetscErrorCode ierr;
4891302d50aSBarry Smith   PetscInt       nstash,reallocs;
490a30f8f8cSSatish Balay   InsertMode     addv;
491a30f8f8cSSatish Balay 
492a30f8f8cSSatish Balay   PetscFunctionBegin;
4934cb17eb5SBarry Smith   if (baij->donotstash || mat->nooffprocentries) {
494a30f8f8cSSatish Balay     PetscFunctionReturn(0);
495a30f8f8cSSatish Balay   }
496a30f8f8cSSatish Balay 
497a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4987adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
499e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
500a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
501a30f8f8cSSatish Balay 
502d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5031e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
504a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5051e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
506a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5071e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
508a30f8f8cSSatish Balay   PetscFunctionReturn(0);
509a30f8f8cSSatish Balay }
510a30f8f8cSSatish Balay 
5114a2ae208SSatish Balay #undef __FUNCT__
5124a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
513dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
514a30f8f8cSSatish Balay {
515a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
516a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5176849ba73SBarry Smith   PetscErrorCode ierr;
51813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
519e44c0bd4SBarry Smith   PetscInt       *row,*col;
520ace3abfcSBarry Smith   PetscBool      other_disassembled;
52113f74950SBarry Smith   PetscMPIInt    n;
522ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
523a30f8f8cSSatish Balay   MatScalar      *val;
524a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
525a30f8f8cSSatish Balay 
52691c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
527a30f8f8cSSatish Balay   PetscFunctionBegin;
528a30f8f8cSSatish Balay 
5294cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
530a30f8f8cSSatish Balay     while (1) {
531a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
532a30f8f8cSSatish Balay       if (!flg) break;
533a30f8f8cSSatish Balay 
534a30f8f8cSSatish Balay       for (i=0; i<n;) {
535a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
536a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
537a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
538a30f8f8cSSatish Balay         else       ncols = n-i;
539a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
540dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
541a30f8f8cSSatish Balay         i = j;
542a30f8f8cSSatish Balay       }
543a30f8f8cSSatish Balay     }
544a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
545a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
546a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
547a30f8f8cSSatish Balay        restore the original flags */
548a30f8f8cSSatish Balay     r1 = baij->roworiented;
549a30f8f8cSSatish Balay     r2 = a->roworiented;
55091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
551a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
552a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
554a30f8f8cSSatish Balay     while (1) {
555a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
556a30f8f8cSSatish Balay       if (!flg) break;
557a30f8f8cSSatish Balay 
558a30f8f8cSSatish Balay       for (i=0; i<n;) {
559a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
560a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
561a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
562a30f8f8cSSatish Balay         else       ncols = n-i;
563dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
564a30f8f8cSSatish Balay         i = j;
565a30f8f8cSSatish Balay       }
566a30f8f8cSSatish Balay     }
567a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
568a30f8f8cSSatish Balay     baij->roworiented = r1;
569a30f8f8cSSatish Balay     a->roworiented    = r2;
57091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
571a30f8f8cSSatish Balay   }
572a30f8f8cSSatish Balay 
573a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay 
576a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
577a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
578a30f8f8cSSatish Balay   /*
579a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
580a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
581a30f8f8cSSatish Balay   */
582a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5837adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
584a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
585c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
586a30f8f8cSSatish Balay     }
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay 
589a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
591a30f8f8cSSatish Balay   }
592cd6b891eSBarry Smith   ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
595a30f8f8cSSatish Balay 
59674ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
597a30f8f8cSSatish Balay   baij->rowvalues = 0;
5985222a1afSHong Zhang 
599a30f8f8cSSatish Balay   PetscFunctionReturn(0);
600a30f8f8cSSatish Balay }
601a30f8f8cSSatish Balay 
602dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6034a2ae208SSatish Balay #undef __FUNCT__
6044a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6056849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
606a30f8f8cSSatish Balay {
607a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
608dfbe8321SBarry Smith   PetscErrorCode    ierr;
609d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6101302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
611ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
612b0a32e0cSBarry Smith   PetscViewer       sviewer;
613f3ef73ceSBarry Smith   PetscViewerFormat format;
614a30f8f8cSSatish Balay 
615a30f8f8cSSatish Balay   PetscFunctionBegin;
6162692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
6172692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
61832077d6dSBarry Smith   if (iascii) {
619b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
620456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
621a30f8f8cSSatish Balay       MatInfo info;
6227adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
623a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6247b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6257b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
627e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
629e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
630b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6317b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63207d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
633a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
634a30f8f8cSSatish Balay       PetscFunctionReturn(0);
635fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63677431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
637a30f8f8cSSatish Balay       PetscFunctionReturn(0);
638c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
639c1490034SHong Zhang       PetscFunctionReturn(0);
640a30f8f8cSSatish Balay     }
641a30f8f8cSSatish Balay   }
642a30f8f8cSSatish Balay 
643a30f8f8cSSatish Balay   if (isdraw) {
644b0a32e0cSBarry Smith     PetscDraw  draw;
645ace3abfcSBarry Smith     PetscBool  isnull;
646b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
647b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
648a30f8f8cSSatish Balay   }
649a30f8f8cSSatish Balay 
650a30f8f8cSSatish Balay   if (size == 1) {
6517adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
652a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
653a30f8f8cSSatish Balay   } else {
654a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
655a30f8f8cSSatish Balay     Mat          A;
65665d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65765d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
658d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
659a30f8f8cSSatish Balay     MatScalar    *a;
660a30f8f8cSSatish Balay 
661f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6627adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
663a30f8f8cSSatish Balay     if (!rank) {
664f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
665a30f8f8cSSatish Balay     } else {
666f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
667a30f8f8cSSatish Balay     }
668f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
669d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
6702b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
67152e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
672a30f8f8cSSatish Balay 
673a30f8f8cSSatish Balay     /* copy over the A part */
67465d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
675a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6761302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
679e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
680a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
681a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
682e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
683a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
684dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
685a30f8f8cSSatish Balay           col++; a += bs;
686a30f8f8cSSatish Balay         }
687a30f8f8cSSatish Balay       }
688a30f8f8cSSatish Balay     }
689a30f8f8cSSatish Balay     /* copy over the B part */
69065d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69165d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
692a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
693e9f7bc9eSHong Zhang 
694e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
695a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
696a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
697a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
698a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
699799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
700a30f8f8cSSatish Balay           col++; a += bs;
701a30f8f8cSSatish Balay         }
702a30f8f8cSSatish Balay       }
703a30f8f8cSSatish Balay     }
704a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
707a30f8f8cSSatish Balay     /*
708a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
709b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
710a30f8f8cSSatish Balay     */
711b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71265d70643SHong Zhang     if (!rank) {
7137adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7147566de4bSShri Abhyankar           /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/
7157566de4bSShri Abhyankar       PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ);
716a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
717a30f8f8cSSatish Balay     }
718b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7196bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
720a30f8f8cSSatish Balay   }
721a30f8f8cSSatish Balay   PetscFunctionReturn(0);
722a30f8f8cSSatish Balay }
723a30f8f8cSSatish Balay 
7244a2ae208SSatish Balay #undef __FUNCT__
7254a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
726dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
727a30f8f8cSSatish Balay {
728dfbe8321SBarry Smith   PetscErrorCode ierr;
729ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
730a30f8f8cSSatish Balay 
731a30f8f8cSSatish Balay   PetscFunctionBegin;
7322692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
7332692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7342692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
7352692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73632077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
737a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
738a30f8f8cSSatish Balay   } else {
739e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
740a30f8f8cSSatish Balay   }
741a30f8f8cSSatish Balay   PetscFunctionReturn(0);
742a30f8f8cSSatish Balay }
743a30f8f8cSSatish Balay 
7444a2ae208SSatish Balay #undef __FUNCT__
7454a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
746dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
747a30f8f8cSSatish Balay {
748a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
749dfbe8321SBarry Smith   PetscErrorCode ierr;
750a30f8f8cSSatish Balay 
751a30f8f8cSSatish Balay   PetscFunctionBegin;
752a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
753d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
754a30f8f8cSSatish Balay #endif
755a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
756a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7576bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7586bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
759a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7606bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
761a30f8f8cSSatish Balay #else
76205b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
763a30f8f8cSSatish Balay #endif
76405b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7656bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7666bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7676bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7686bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7726bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7735755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7766bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7776bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7786bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
779ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
78005b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
781a30f8f8cSSatish Balay #endif
78259ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78359ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
784899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
785bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
786901853e0SKris Buschelman 
787dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
792aa5a9175SDahai Guo   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C","",PETSC_NULL);CHKERRQ(ierr);
793a30f8f8cSSatish Balay   PetscFunctionReturn(0);
794a30f8f8cSSatish Balay }
795a30f8f8cSSatish Balay 
7964a2ae208SSatish Balay #undef __FUNCT__
797547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
798547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
799547795f9SHong Zhang {
800547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
801547795f9SHong Zhang   PetscErrorCode ierr;
802547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
803547795f9SHong Zhang   PetscScalar    *x,*from;
804547795f9SHong Zhang 
805547795f9SHong Zhang   PetscFunctionBegin;
806547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
807e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
808547795f9SHong Zhang 
809547795f9SHong Zhang   /* diagonal part */
810547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
811547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
812547795f9SHong Zhang 
813547795f9SHong Zhang   /* subdiagonal part */
814547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
815547795f9SHong Zhang 
816547795f9SHong Zhang   /* copy x into the vec slvec0 */
817547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
818547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
819547795f9SHong Zhang 
820547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
821547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
823547795f9SHong Zhang 
824547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
825547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826547795f9SHong Zhang   /* supperdiagonal part */
827547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
828547795f9SHong Zhang   PetscFunctionReturn(0);
829547795f9SHong Zhang }
830547795f9SHong Zhang 
831547795f9SHong Zhang #undef __FUNCT__
832a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
833dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
834a9d4b620SHong Zhang {
835a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
836dfbe8321SBarry Smith   PetscErrorCode ierr;
837d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
838fa22f6d0SBarry Smith   PetscScalar    *x,*from;
839a9d4b620SHong Zhang 
840a9d4b620SHong Zhang   PetscFunctionBegin;
841a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
842e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
843a9d4b620SHong Zhang 
844a9d4b620SHong Zhang   /* diagonal part */
845a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
846fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
847a9d4b620SHong Zhang 
848a9d4b620SHong Zhang   /* subdiagonal part */
849a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
850fc165ae2SBarry Smith 
851a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8521ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8531ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
854a9d4b620SHong Zhang 
855fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
856fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8571ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
858fc165ae2SBarry Smith 
859fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
860ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
861a9d4b620SHong Zhang   /* supperdiagonal part */
862a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
863a9d4b620SHong Zhang   PetscFunctionReturn(0);
864a9d4b620SHong Zhang }
865a9d4b620SHong Zhang 
866a9d4b620SHong Zhang #undef __FUNCT__
86740781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
868dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
869a30f8f8cSSatish Balay {
870a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
871dfbe8321SBarry Smith   PetscErrorCode ierr;
8721302d50aSBarry Smith   PetscInt       nt;
873a30f8f8cSSatish Balay 
874a30f8f8cSSatish Balay   PetscFunctionBegin;
875a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
876e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
877e7e72b3dSBarry Smith 
878a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
879e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88065d70643SHong Zhang 
881ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
882b941877fSHong Zhang   /* do diagonal part */
883b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
884b941877fSHong Zhang   /* do supperdiagonal part */
885ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
886b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
887b941877fSHong Zhang   /* do subdiagonal part */
888b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
889ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
890ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89165d70643SHong Zhang 
892a30f8f8cSSatish Balay   PetscFunctionReturn(0);
893a30f8f8cSSatish Balay }
894a30f8f8cSSatish Balay 
8954a2ae208SSatish Balay #undef __FUNCT__
8964a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
897dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
898a30f8f8cSSatish Balay {
899de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
900dfbe8321SBarry Smith   PetscErrorCode ierr;
901d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
902a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
903a9d4b620SHong Zhang 
904a9d4b620SHong Zhang   PetscFunctionBegin;
905a9d4b620SHong Zhang   /*
9067adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9077adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
908a9d4b620SHong Zhang   */
909a9d4b620SHong Zhang   /* diagonal part */
910a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9112dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
912a9d4b620SHong Zhang 
913a9d4b620SHong Zhang   /* subdiagonal part */
914a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
915a9d4b620SHong Zhang 
916a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9171ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9181ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
919a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9201ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
921a9d4b620SHong Zhang 
922ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9231ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
924ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
925a9d4b620SHong Zhang 
926a9d4b620SHong Zhang   /* supperdiagonal part */
927a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
928a9d4b620SHong Zhang 
929a9d4b620SHong Zhang   PetscFunctionReturn(0);
930a9d4b620SHong Zhang }
931a9d4b620SHong Zhang 
932a9d4b620SHong Zhang #undef __FUNCT__
933a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
934dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
935a9d4b620SHong Zhang {
936a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
937dfbe8321SBarry Smith   PetscErrorCode ierr;
938a30f8f8cSSatish Balay 
939a30f8f8cSSatish Balay   PetscFunctionBegin;
940ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
941b941877fSHong Zhang   /* do diagonal part */
942b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
943b941877fSHong Zhang   /* do supperdiagonal part */
944ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
945de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
946de8b6608SHong Zhang 
947b941877fSHong Zhang   /* do subdiagonal part */
948a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
949ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
950ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
951aa482183SHong Zhang 
952a30f8f8cSSatish Balay   PetscFunctionReturn(0);
953a30f8f8cSSatish Balay }
954a30f8f8cSSatish Balay 
955a30f8f8cSSatish Balay /*
956a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
957a30f8f8cSSatish Balay    diagonal block
958a30f8f8cSSatish Balay */
9594a2ae208SSatish Balay #undef __FUNCT__
9604a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
961dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
962a30f8f8cSSatish Balay {
963a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
964dfbe8321SBarry Smith   PetscErrorCode ierr;
965a30f8f8cSSatish Balay 
966a30f8f8cSSatish Balay   PetscFunctionBegin;
967e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
968a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
969a30f8f8cSSatish Balay   PetscFunctionReturn(0);
970a30f8f8cSSatish Balay }
971a30f8f8cSSatish Balay 
9724a2ae208SSatish Balay #undef __FUNCT__
9734a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
974f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
975a30f8f8cSSatish Balay {
976a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
977dfbe8321SBarry Smith   PetscErrorCode ierr;
978a30f8f8cSSatish Balay 
979a30f8f8cSSatish Balay   PetscFunctionBegin;
980f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
981f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
982a30f8f8cSSatish Balay   PetscFunctionReturn(0);
983a30f8f8cSSatish Balay }
984a30f8f8cSSatish Balay 
9854a2ae208SSatish Balay #undef __FUNCT__
9864a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9871302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
988a30f8f8cSSatish Balay {
989d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
990d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
991d0d4cfc2SHong Zhang   PetscErrorCode ierr;
992d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
993d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
994899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
995d0d4cfc2SHong Zhang 
996a30f8f8cSSatish Balay   PetscFunctionBegin;
997e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
998d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
999d0d4cfc2SHong Zhang 
1000d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1001d0d4cfc2SHong Zhang     /*
1002d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1003d0d4cfc2SHong Zhang     */
1004d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1005d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1006d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1007d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1008d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1009d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1010d0d4cfc2SHong Zhang     }
101174ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1012d0d4cfc2SHong Zhang   }
1013d0d4cfc2SHong Zhang 
1014e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1015d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1016d0d4cfc2SHong Zhang 
1017d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1018d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1019d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1020d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1021d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1022d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1023d0d4cfc2SHong Zhang 
1024d0d4cfc2SHong Zhang   cmap  = mat->garray;
1025d0d4cfc2SHong Zhang   if (v  || idx) {
1026d0d4cfc2SHong Zhang     if (nztot) {
1027d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1028d0d4cfc2SHong Zhang       PetscInt imark = -1;
1029d0d4cfc2SHong Zhang       if (v) {
1030d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1031d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1032d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1033d0d4cfc2SHong Zhang           else break;
1034d0d4cfc2SHong Zhang         }
1035d0d4cfc2SHong Zhang         imark = i;
1036d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1037d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1038d0d4cfc2SHong Zhang       }
1039d0d4cfc2SHong Zhang       if (idx) {
1040d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1041d0d4cfc2SHong Zhang         if (imark > -1) {
1042d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1043d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1044d0d4cfc2SHong Zhang           }
1045d0d4cfc2SHong Zhang         } else {
1046d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1047d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1048d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1049d0d4cfc2SHong Zhang             else break;
1050d0d4cfc2SHong Zhang           }
1051d0d4cfc2SHong Zhang           imark = i;
1052d0d4cfc2SHong Zhang         }
1053d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1054d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1055d0d4cfc2SHong Zhang       }
1056d0d4cfc2SHong Zhang     } else {
1057d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1058d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1059d0d4cfc2SHong Zhang     }
1060d0d4cfc2SHong Zhang   }
1061d0d4cfc2SHong Zhang   *nz = nztot;
1062d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1063d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1064a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1065a30f8f8cSSatish Balay }
1066a30f8f8cSSatish Balay 
10674a2ae208SSatish Balay #undef __FUNCT__
10684a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10691302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1070a30f8f8cSSatish Balay {
1071a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1072a30f8f8cSSatish Balay 
1073a30f8f8cSSatish Balay   PetscFunctionBegin;
1074e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1075a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1076a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1077a30f8f8cSSatish Balay }
1078a30f8f8cSSatish Balay 
10794a2ae208SSatish Balay #undef __FUNCT__
1080d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1081d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1082d0d4cfc2SHong Zhang {
1083d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1084d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1085d0d4cfc2SHong Zhang 
1086d0d4cfc2SHong Zhang   PetscFunctionBegin;
1087d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1088d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1089d0d4cfc2SHong Zhang }
1090d0d4cfc2SHong Zhang #undef __FUNCT__
1091d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1092d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1093d0d4cfc2SHong Zhang {
1094d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1095d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1096d0d4cfc2SHong Zhang 
1097d0d4cfc2SHong Zhang   PetscFunctionBegin;
1098d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1099d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1100d0d4cfc2SHong Zhang }
1101d0d4cfc2SHong Zhang 
1102d0d4cfc2SHong Zhang #undef __FUNCT__
110399cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110499cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110599cafbc1SBarry Smith {
110699cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110799cafbc1SBarry Smith   PetscErrorCode ierr;
110899cafbc1SBarry Smith 
110999cafbc1SBarry Smith   PetscFunctionBegin;
111099cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111199cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111299cafbc1SBarry Smith   PetscFunctionReturn(0);
111399cafbc1SBarry Smith }
111499cafbc1SBarry Smith 
111599cafbc1SBarry Smith #undef __FUNCT__
111699cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111899cafbc1SBarry Smith {
111999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112099cafbc1SBarry Smith   PetscErrorCode ierr;
112199cafbc1SBarry Smith 
112299cafbc1SBarry Smith   PetscFunctionBegin;
112399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112599cafbc1SBarry Smith   PetscFunctionReturn(0);
112699cafbc1SBarry Smith }
112799cafbc1SBarry Smith 
112899cafbc1SBarry Smith #undef __FUNCT__
11294a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1130dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1131a30f8f8cSSatish Balay {
1132a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1133dfbe8321SBarry Smith   PetscErrorCode ierr;
1134a30f8f8cSSatish Balay 
1135a30f8f8cSSatish Balay   PetscFunctionBegin;
1136a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1137a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1138a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1139a30f8f8cSSatish Balay }
1140a30f8f8cSSatish Balay 
11414a2ae208SSatish Balay #undef __FUNCT__
11424a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1143dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1144a30f8f8cSSatish Balay {
1145a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1146a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1147dfbe8321SBarry Smith   PetscErrorCode ierr;
1148a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1149a30f8f8cSSatish Balay 
1150a30f8f8cSSatish Balay   PetscFunctionBegin;
1151d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1152a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1153a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1154a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1155a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1156a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1157a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1158a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1159a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1160a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1161a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1162a30f8f8cSSatish Balay     info->memory       = isend[3];
1163a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1164a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1165d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1166a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1167a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1168a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1169a30f8f8cSSatish Balay     info->memory       = irecv[3];
1170a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1171a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1172d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1173a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1174a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1175a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1176a30f8f8cSSatish Balay     info->memory       = irecv[3];
1177a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1178a30f8f8cSSatish Balay   } else {
1179e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1180a30f8f8cSSatish Balay   }
1181a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1182a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1183a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1184a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1185a30f8f8cSSatish Balay }
1186a30f8f8cSSatish Balay 
11874a2ae208SSatish Balay #undef __FUNCT__
11884a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1189ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool  flg)
1190a30f8f8cSSatish Balay {
1191a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1192d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1193dfbe8321SBarry Smith   PetscErrorCode ierr;
1194a30f8f8cSSatish Balay 
1195a30f8f8cSSatish Balay   PetscFunctionBegin;
1196e98b92d7SKris Buschelman   switch (op) {
1197512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1198e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
119928b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1200a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1201e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12024e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12034e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1204e98b92d7SKris Buschelman     break;
1205e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12064e0d8c25SBarry Smith     a->roworiented = flg;
12074e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12084e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1209e98b92d7SKris Buschelman     break;
12104e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1211290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1212e98b92d7SKris Buschelman     break;
1213e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12144e0d8c25SBarry Smith     a->donotstash = flg;
1215e98b92d7SKris Buschelman     break;
1216e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12174e0d8c25SBarry Smith     a->ht_flag = flg;
1218e98b92d7SKris Buschelman     break;
12199a4540c5SBarry Smith   case MAT_HERMITIAN:
1220e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1221eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1222547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1223eeffb40dSHong Zhang     break;
1224ffa07934SHong Zhang   case MAT_SPD:
1225ffa07934SHong Zhang     A->spd_set                         = PETSC_TRUE;
1226ffa07934SHong Zhang     A->spd                             = flg;
1227ffa07934SHong Zhang     if (flg) {
1228ffa07934SHong Zhang       A->symmetric                     = PETSC_TRUE;
1229ffa07934SHong Zhang       A->structurally_symmetric        = PETSC_TRUE;
1230ffa07934SHong Zhang       A->symmetric_set                 = PETSC_TRUE;
1231ffa07934SHong Zhang       A->structurally_symmetric_set    = PETSC_TRUE;
1232ffa07934SHong Zhang     }
1233ffa07934SHong Zhang     break;
123477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1235eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1236eeffb40dSHong Zhang     break;
123777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1238eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1239eeffb40dSHong Zhang     break;
12409a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1241e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1242290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124377e54ba9SKris Buschelman     break;
1244d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12454e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1246d0d4cfc2SHong Zhang     break;
1247d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12484e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1249d0d4cfc2SHong Zhang     break;
1250d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12514e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1252d0d4cfc2SHong Zhang     break;
1253e98b92d7SKris Buschelman   default:
1254e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1255a30f8f8cSSatish Balay   }
1256a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1257a30f8f8cSSatish Balay }
1258a30f8f8cSSatish Balay 
12594a2ae208SSatish Balay #undef __FUNCT__
12608115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1261fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1262a30f8f8cSSatish Balay {
1263dfbe8321SBarry Smith   PetscErrorCode ierr;
1264a30f8f8cSSatish Balay   PetscFunctionBegin;
1265815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1266999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1267fc4dec0aSBarry Smith   }
12688115998fSBarry Smith   PetscFunctionReturn(0);
1269a30f8f8cSSatish Balay }
1270a30f8f8cSSatish Balay 
12714a2ae208SSatish Balay #undef __FUNCT__
12724a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1273dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1274a30f8f8cSSatish Balay {
1275a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1276a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1277dfbe8321SBarry Smith   PetscErrorCode ierr;
12785e90f9d9SHong Zhang   PetscInt       nv,m,n;
1279ace3abfcSBarry Smith   PetscBool      flg;
1280a30f8f8cSSatish Balay 
1281a30f8f8cSSatish Balay   PetscFunctionBegin;
1282a30f8f8cSSatish Balay   if (ll != rr){
1283b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1284e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1285a30f8f8cSSatish Balay   }
1286b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1287b3bf805bSHong Zhang 
12885e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1289e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1290b3bf805bSHong Zhang 
12915e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1292e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12935e90f9d9SHong Zhang 
1294ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12955e90f9d9SHong Zhang 
12965e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1297a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12985e90f9d9SHong Zhang 
12995e90f9d9SHong Zhang   /* scale the diagonal part */
1300a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1301a30f8f8cSSatish Balay 
13025e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1303ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1304a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1305a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1306a30f8f8cSSatish Balay }
1307a30f8f8cSSatish Balay 
13084a2ae208SSatish Balay #undef __FUNCT__
13094a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1310dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1311a30f8f8cSSatish Balay {
1312f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1313dfbe8321SBarry Smith   PetscErrorCode ierr;
1314a30f8f8cSSatish Balay 
1315a30f8f8cSSatish Balay   PetscFunctionBegin;
1316a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1317a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1318a30f8f8cSSatish Balay }
1319a30f8f8cSSatish Balay 
13206849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1321a30f8f8cSSatish Balay 
13224a2ae208SSatish Balay #undef __FUNCT__
13234a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1324ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1325a30f8f8cSSatish Balay {
1326a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1327a30f8f8cSSatish Balay   Mat            a,b,c,d;
1328ace3abfcSBarry Smith   PetscBool      flg;
1329dfbe8321SBarry Smith   PetscErrorCode ierr;
1330a30f8f8cSSatish Balay 
1331a30f8f8cSSatish Balay   PetscFunctionBegin;
1332a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1333a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1334a30f8f8cSSatish Balay 
1335a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1336abc0a331SBarry Smith   if (flg) {
1337a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1338a30f8f8cSSatish Balay   }
13397adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1340a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1341a30f8f8cSSatish Balay }
1342a30f8f8cSSatish Balay 
13434a2ae208SSatish Balay #undef __FUNCT__
13443c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13453c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13463c896bc6SHong Zhang {
13473c896bc6SHong Zhang   PetscErrorCode ierr;
13483c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13493c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13503c896bc6SHong Zhang 
13513c896bc6SHong Zhang   PetscFunctionBegin;
13523c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13533c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1354d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13553c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1356d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13573c896bc6SHong Zhang   } else {
13583c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13593c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13603c896bc6SHong Zhang   }
13613c896bc6SHong Zhang   PetscFunctionReturn(0);
13623c896bc6SHong Zhang }
13633c896bc6SHong Zhang 
13643c896bc6SHong Zhang #undef __FUNCT__
13654a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1366dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1367273d9f13SBarry Smith {
1368dfbe8321SBarry Smith   PetscErrorCode ierr;
1369273d9f13SBarry Smith 
1370273d9f13SBarry Smith   PetscFunctionBegin;
1371db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1372273d9f13SBarry Smith   PetscFunctionReturn(0);
1373273d9f13SBarry Smith }
1374a5e6ed63SBarry Smith 
13754fe895cdSHong Zhang #undef __FUNCT__
13764fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13774fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13784fe895cdSHong Zhang {
13794fe895cdSHong Zhang   PetscErrorCode ierr;
13804fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13814fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13824fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13834fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13844fe895cdSHong Zhang 
13854fe895cdSHong Zhang   PetscFunctionBegin;
13864fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13874fe895cdSHong Zhang     PetscScalar alpha = a;
13884fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13894fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13900805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13914fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13924fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13934fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13940805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13954fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13964fe895cdSHong Zhang   } else {
1397d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13984fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1399d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14004fe895cdSHong Zhang   }
14014fe895cdSHong Zhang   PetscFunctionReturn(0);
14024fe895cdSHong Zhang }
14034fe895cdSHong Zhang 
1404a5e6ed63SBarry Smith #undef __FUNCT__
14056363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
14066363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
14076363de48SJed Brown {
14086363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14096363de48SJed Brown   PetscInt        rbs,cbs;
14106363de48SJed Brown   PetscErrorCode  ierr;
14116363de48SJed Brown 
14126363de48SJed Brown   PetscFunctionBegin;
14136363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14146363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14156363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14166363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1417e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
1418e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14196363de48SJed Brown   PetscFunctionReturn(0);
14206363de48SJed Brown }
14216363de48SJed Brown 
14226363de48SJed Brown #undef __FUNCT__
1423a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14241302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1425a5e6ed63SBarry Smith {
14266849ba73SBarry Smith   PetscErrorCode ierr;
14271302d50aSBarry Smith   PetscInt       i;
1428ace3abfcSBarry Smith   PetscBool      flg;
1429a5e6ed63SBarry Smith 
14306849ba73SBarry Smith   PetscFunctionBegin;
1431a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1432a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1433e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1434a5e6ed63SBarry Smith   }
1435a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1436a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1437a5e6ed63SBarry Smith }
1438a5e6ed63SBarry Smith 
1439a5e6ed63SBarry Smith 
1440a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1441a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1442a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1443a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1444a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1445a9d4b620SHong Zhang        MatMult_MPISBAIJ,
144697304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1447431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1448431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1449a30f8f8cSSatish Balay        0,
1450a30f8f8cSSatish Balay        0,
1451a30f8f8cSSatish Balay        0,
145297304618SKris Buschelman /*10*/ 0,
1453a30f8f8cSSatish Balay        0,
1454a30f8f8cSSatish Balay        0,
145541f059aeSBarry Smith        MatSOR_MPISBAIJ,
1456a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
145797304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1458a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1459a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1460a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1463a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1464a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1465a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1466d519adbfSMatthew Knepley /*24*/ 0,
1467a30f8f8cSSatish Balay        0,
1468a30f8f8cSSatish Balay        0,
1469a30f8f8cSSatish Balay        0,
1470a30f8f8cSSatish Balay        0,
1471d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1472b5df2d14SHong Zhang        0,
1473a30f8f8cSSatish Balay        0,
1474a30f8f8cSSatish Balay        0,
1475a30f8f8cSSatish Balay        0,
1476d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1482a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1483d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1484a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14853c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1486d519adbfSMatthew Knepley /*44*/ 0,
1487a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1488a30f8f8cSSatish Balay        0,
1489a30f8f8cSSatish Balay        0,
1490a30f8f8cSSatish Balay        0,
14916363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1492a30f8f8cSSatish Balay        0,
1493a30f8f8cSSatish Balay        0,
1494a30f8f8cSSatish Balay        0,
1495a30f8f8cSSatish Balay        0,
1496d519adbfSMatthew Knepley /*54*/ 0,
1497a30f8f8cSSatish Balay        0,
1498a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1499a30f8f8cSSatish Balay        0,
1500a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1501d519adbfSMatthew Knepley /*59*/ 0,
1502a30f8f8cSSatish Balay        0,
1503a30f8f8cSSatish Balay        0,
1504357abbc8SBarry Smith        0,
150524d5174aSHong Zhang        0,
1506d519adbfSMatthew Knepley /*64*/ 0,
150724d5174aSHong Zhang        0,
150824d5174aSHong Zhang        0,
150924d5174aSHong Zhang        0,
151024d5174aSHong Zhang        0,
1511d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151224d5174aSHong Zhang        0,
151397304618SKris Buschelman        0,
151497304618SKris Buschelman        0,
151597304618SKris Buschelman        0,
1516d519adbfSMatthew Knepley /*74*/ 0,
151797304618SKris Buschelman        0,
151897304618SKris Buschelman        0,
151997304618SKris Buschelman        0,
152097304618SKris Buschelman        0,
1521d519adbfSMatthew Knepley /*79*/ 0,
152297304618SKris Buschelman        0,
152397304618SKris Buschelman        0,
152497304618SKris Buschelman        0,
15255bba2384SShri Abhyankar        MatLoad_MPISBAIJ,
1526d519adbfSMatthew Knepley /*84*/ 0,
1527865e5f61SKris Buschelman        0,
1528865e5f61SKris Buschelman        0,
1529865e5f61SKris Buschelman        0,
1530865e5f61SKris Buschelman        0,
1531d519adbfSMatthew Knepley /*89*/ 0,
1532865e5f61SKris Buschelman        0,
1533865e5f61SKris Buschelman        0,
1534865e5f61SKris Buschelman        0,
1535865e5f61SKris Buschelman        0,
1536d519adbfSMatthew Knepley /*94*/ 0,
1537865e5f61SKris Buschelman        0,
1538865e5f61SKris Buschelman        0,
153999cafbc1SBarry Smith        0,
154099cafbc1SBarry Smith        0,
1541d519adbfSMatthew Knepley /*99*/ 0,
154299cafbc1SBarry Smith        0,
154399cafbc1SBarry Smith        0,
154499cafbc1SBarry Smith        0,
154599cafbc1SBarry Smith        0,
1546d519adbfSMatthew Knepley /*104*/0,
154799cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1548d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1549d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
155095936485SShri Abhyankar        MatRestoreRowUpperTriangular_MPISBAIJ,
155195936485SShri Abhyankar /*109*/0,
155295936485SShri Abhyankar        0,
155395936485SShri Abhyankar        0,
155495936485SShri Abhyankar        0,
155595936485SShri Abhyankar        0,
155695936485SShri Abhyankar /*114*/0,
155795936485SShri Abhyankar        0,
155895936485SShri Abhyankar        0,
155995936485SShri Abhyankar        0,
156095936485SShri Abhyankar        0,
156195936485SShri Abhyankar /*119*/0,
156295936485SShri Abhyankar        0,
156395936485SShri Abhyankar        0,
15645bba2384SShri Abhyankar        0
156599cafbc1SBarry Smith };
1566a30f8f8cSSatish Balay 
1567a30f8f8cSSatish Balay 
1568a30f8f8cSSatish Balay EXTERN_C_BEGIN
15694a2ae208SSatish Balay #undef __FUNCT__
15704a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
157111bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1572a30f8f8cSSatish Balay {
1573a30f8f8cSSatish Balay   PetscFunctionBegin;
1574a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ *)A->data)->A;
1575a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1576a30f8f8cSSatish Balay }
1577a30f8f8cSSatish Balay EXTERN_C_END
1578a30f8f8cSSatish Balay 
1579273d9f13SBarry Smith EXTERN_C_BEGIN
15804a2ae208SSatish Balay #undef __FUNCT__
1581a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
15827087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1583a23d5eceSKris Buschelman {
1584a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1585dfbe8321SBarry Smith   PetscErrorCode ierr;
1586db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1587a23d5eceSKris Buschelman 
1588a23d5eceSKris Buschelman   PetscFunctionBegin;
1589db4efbfdSBarry Smith   if (bs < 0){
15907adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1591db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15928c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1593db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1594db4efbfdSBarry Smith   }
1595e7e72b3dSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1596db4efbfdSBarry Smith   bs = newbs;
1597a23d5eceSKris Buschelman 
1598a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1599a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1600e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1601e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1602899cda47SBarry Smith 
1603d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
160426283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
160526283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1606899cda47SBarry Smith 
1607a23d5eceSKris Buschelman   if (d_nnz) {
1608d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1609e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1610a23d5eceSKris Buschelman     }
1611a23d5eceSKris Buschelman   }
1612a23d5eceSKris Buschelman   if (o_nnz) {
1613d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1614e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1615a23d5eceSKris Buschelman     }
1616a23d5eceSKris Buschelman   }
1617a23d5eceSKris Buschelman 
1618a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1619d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1620d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1621c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1622a23d5eceSKris Buschelman 
1623d0f46423SBarry Smith   B->rmap->bs  = bs;
1624a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1625a23d5eceSKris Buschelman   b->mbs = mbs;
1626a23d5eceSKris Buschelman   b->nbs = mbs;
1627a23d5eceSKris Buschelman   b->Mbs = Mbs;
1628a23d5eceSKris Buschelman   b->Nbs = Mbs;
1629a23d5eceSKris Buschelman 
1630a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1631d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1632a23d5eceSKris Buschelman   }
1633d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1634d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1635a23d5eceSKris Buschelman 
1636d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1637d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1638a23d5eceSKris Buschelman 
1639526dfc15SBarry Smith   if (!B->preallocated) {
1640f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1641d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16429c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
164352e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1644f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1645d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16464aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
164752e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
164815bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1649526dfc15SBarry Smith   }
1650a23d5eceSKris Buschelman 
1651526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1652526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1653526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
16547827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1655a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1656a23d5eceSKris Buschelman }
1657a23d5eceSKris Buschelman EXTERN_C_END
1658a23d5eceSKris Buschelman 
16595c9eb25fSBarry Smith EXTERN_C_BEGIN
1660dfb205c3SBarry Smith #undef __FUNCT__
1661dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1662dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1663dfb205c3SBarry Smith {
1664dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1665dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1666dfb205c3SBarry Smith   const PetscInt *JJ=0;
1667dfb205c3SBarry Smith   PetscScalar    *values=0;
1668dfb205c3SBarry Smith   PetscErrorCode ierr;
1669dfb205c3SBarry Smith 
1670dfb205c3SBarry Smith   PetscFunctionBegin;
1671dfb205c3SBarry Smith 
1672dfb205c3SBarry Smith   if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1673dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1674dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1675dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1676dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1677dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1678dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1679dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1680dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1681dfb205c3SBarry Smith 
1682dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1683dfb205c3SBarry Smith   ierr  = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
1684dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1685dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1686dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1687dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1688dfb205c3SBarry Smith     JJ  = jj + ii[i];
1689dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1690dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1691dfb205c3SBarry Smith       JJ++;
1692dfb205c3SBarry Smith     }
1693dfb205c3SBarry Smith     d = 0;
1694dfb205c3SBarry Smith     for (; j<nz; j++) {
1695dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1696dfb205c3SBarry Smith       d++;
1697dfb205c3SBarry Smith     }
1698dfb205c3SBarry Smith     d_nnz[i] = d;
1699dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1700dfb205c3SBarry Smith   }
1701dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1702dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1703dfb205c3SBarry Smith 
1704dfb205c3SBarry Smith   values = (PetscScalar*)V;
1705dfb205c3SBarry Smith   if (!values) {
1706dfb205c3SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
1707dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1708dfb205c3SBarry Smith   }
1709dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1710dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1711dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1712dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1713dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1714dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1715dfb205c3SBarry Smith   }
1716dfb205c3SBarry Smith 
1717dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1718dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1719dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17207827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1721dfb205c3SBarry Smith   PetscFunctionReturn(0);
1722dfb205c3SBarry Smith }
1723dfb205c3SBarry Smith EXTERN_C_END
1724dfb205c3SBarry Smith 
1725dfb205c3SBarry Smith EXTERN_C_BEGIN
1726611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
17277087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1728611f576cSBarry Smith #endif
1729611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
17307087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1731611f576cSBarry Smith #endif
1732b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1733b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1734b5e56a35SBarry Smith #endif
17355c9eb25fSBarry Smith EXTERN_C_END
17365c9eb25fSBarry Smith 
17370bad9183SKris Buschelman /*MC
1738fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1739828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1740828413b8SBarry Smith    the matrix is stored.
1741828413b8SBarry Smith 
1742828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1743828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17440bad9183SKris Buschelman 
17450bad9183SKris Buschelman    Options Database Keys:
17460bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17470bad9183SKris Buschelman 
17480bad9183SKris Buschelman   Level: beginner
17490bad9183SKris Buschelman 
17500bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17510bad9183SKris Buschelman M*/
17520bad9183SKris Buschelman 
1753a23d5eceSKris Buschelman EXTERN_C_BEGIN
1754aa5a9175SDahai Guo extern PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,const MatType,MatReuse,Mat*);
1755aa5a9175SDahai Guo EXTERN_C_END
1756aa5a9175SDahai Guo 
1757aa5a9175SDahai Guo EXTERN_C_BEGIN
1758a23d5eceSKris Buschelman #undef __FUNCT__
17594a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17607087cfbeSBarry Smith PetscErrorCode  MatCreate_MPISBAIJ(Mat B)
1761b5df2d14SHong Zhang {
1762b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1763dfbe8321SBarry Smith   PetscErrorCode ierr;
1764ace3abfcSBarry Smith   PetscBool      flg;
1765b5df2d14SHong Zhang 
1766b5df2d14SHong Zhang   PetscFunctionBegin;
1767b5df2d14SHong Zhang 
176838f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1769b0a32e0cSBarry Smith   B->data = (void*)b;
1770b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1771b5df2d14SHong Zhang 
1772b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1773b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1774b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1775b5df2d14SHong Zhang 
1776b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
17777adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
17787adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1779b5df2d14SHong Zhang 
1780b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1781899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1782b5df2d14SHong Zhang 
1783b5df2d14SHong Zhang   /* build cache for off array entries formed */
17847adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1785b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1786b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1787b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1788b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1789b5df2d14SHong Zhang 
1790b5df2d14SHong Zhang   /* stuff used in block assembly */
1791b5df2d14SHong Zhang   b->barray       = 0;
1792b5df2d14SHong Zhang 
1793b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1794b5df2d14SHong Zhang   b->lvec         = 0;
1795b5df2d14SHong Zhang   b->Mvctx        = 0;
179640781036SHong Zhang   b->slvec0       = 0;
179740781036SHong Zhang   b->slvec0b      = 0;
179840781036SHong Zhang   b->slvec1       = 0;
179940781036SHong Zhang   b->slvec1a      = 0;
180040781036SHong Zhang   b->slvec1b      = 0;
180140781036SHong Zhang   b->sMvctx       = 0;
1802b5df2d14SHong Zhang 
1803b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1804b5df2d14SHong Zhang   b->rowindices   = 0;
1805b5df2d14SHong Zhang   b->rowvalues    = 0;
1806b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1807b5df2d14SHong Zhang 
1808b5df2d14SHong Zhang   /* hash table stuff */
1809b5df2d14SHong Zhang   b->ht           = 0;
1810b5df2d14SHong Zhang   b->hd           = 0;
1811b5df2d14SHong Zhang   b->ht_size      = 0;
1812b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1813b5df2d14SHong Zhang   b->ht_fact      = 0;
1814b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1815b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1816b5df2d14SHong Zhang 
18177a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
18187a868f3eSHong Zhang   b->ijonly       = PETSC_FALSE;
18197a868f3eSHong Zhang 
182059ffdab8SBarry Smith   b->in_loc       = 0;
182159ffdab8SBarry Smith   b->v_loc        = 0;
182259ffdab8SBarry Smith   b->n_loc        = 0;
18237adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
1824acfcf0e5SJed Brown     ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1825b5df2d14SHong Zhang     if (flg) {
1826f6275e2eSBarry Smith       PetscReal fact = 1.39;
18274e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
18288c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1829b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1830b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
18311e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1832b5df2d14SHong Zhang     }
18338c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
18348c07d4e3SBarry Smith 
1835b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1836ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1837b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1838b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1839b5e56a35SBarry Smith #endif
1840611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1841ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
1842bccb9932SShri Abhyankar                                      "MatGetFactor_sbaij_mumps",
1843bccb9932SShri Abhyankar                                      MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1844611f576cSBarry Smith #endif
1845611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1846ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
18475c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
18485c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1849611f576cSBarry Smith #endif
1850b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1851b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1852b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1853b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1854b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1855b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1856b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1857b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1858b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1859a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1860a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1861a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1862dfb205c3SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",
1863dfb205c3SBarry Smith                                      "MatMPISBAIJSetPreallocationCSR_MPISBAIJ",
1864dfb205c3SBarry Smith                                      MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1865aa5a9175SDahai Guo   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",
1866aa5a9175SDahai Guo                                      "MatConvert_MPISBAIJ_MPISBSTRM",
1867aa5a9175SDahai Guo                                       MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
1868aa5a9175SDahai Guo 
186923ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
187023ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
187123ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
187223ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
187317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1874b5df2d14SHong Zhang   PetscFunctionReturn(0);
1875b5df2d14SHong Zhang }
1876273d9f13SBarry Smith EXTERN_C_END
1877b5df2d14SHong Zhang 
1878209238afSKris Buschelman /*MC
1879002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1880209238afSKris Buschelman 
1881209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1882209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1883209238afSKris Buschelman 
1884209238afSKris Buschelman    Options Database Keys:
1885209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1886209238afSKris Buschelman 
1887209238afSKris Buschelman   Level: beginner
1888209238afSKris Buschelman 
1889209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1890209238afSKris Buschelman M*/
1891209238afSKris Buschelman 
18924a2ae208SSatish Balay #undef __FUNCT__
18934a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1894b5df2d14SHong Zhang /*@C
1895b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1896b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1897b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1898b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1899b5df2d14SHong Zhang 
1900b5df2d14SHong Zhang    Collective on Mat
1901b5df2d14SHong Zhang 
1902b5df2d14SHong Zhang    Input Parameters:
1903b5df2d14SHong Zhang +  A - the matrix
1904b5df2d14SHong Zhang .  bs   - size of blockk
1905b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1906b5df2d14SHong Zhang            submatrix  (same for all local rows)
1907b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
19086d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
19096d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
19106d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1911b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1912b5df2d14SHong Zhang            submatrix (same for all local rows).
1913b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1914c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
1915c2fc9fa9SBarry Smith            (possibly different for each block row) or PETSC_NULL.
1916b5df2d14SHong Zhang 
1917b5df2d14SHong Zhang 
1918b5df2d14SHong Zhang    Options Database Keys:
1919b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1920b5df2d14SHong Zhang                      block calculations (much slower)
1921b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1922b5df2d14SHong Zhang 
1923b5df2d14SHong Zhang    Notes:
1924b5df2d14SHong Zhang 
1925b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1926b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1927b5df2d14SHong Zhang 
192849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
192949a6f317SBarry Smith 
1930b5df2d14SHong Zhang    Storage Information:
1931b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1932b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1933b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1934b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1935b5df2d14SHong Zhang 
1936b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1937b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1938b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1939b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1940b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1941b5df2d14SHong Zhang 
1942aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1943aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1944aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1945aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1946aa95bbe8SBarry Smith 
1947b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1948b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1949b5df2d14SHong Zhang 
1950b5df2d14SHong Zhang .vb
1951b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1952b5df2d14SHong Zhang           -------------------
1953c2fc9fa9SBarry Smith    row 3  |  . . . d d d o o o o o o
1954c2fc9fa9SBarry Smith    row 4  |  . . . d d d o o o o o o
1955c2fc9fa9SBarry Smith    row 5  |  . . . d d d o o o o o o
1956b5df2d14SHong Zhang           -------------------
1957b5df2d14SHong Zhang .ve
1958b5df2d14SHong Zhang 
1959b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1960b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19616d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19626d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1963b5df2d14SHong Zhang 
19646d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19656d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1966c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
1967c2fc9fa9SBarry Smith 
1968b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1969b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1970b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1971b5df2d14SHong Zhang    matrices.
1972b5df2d14SHong Zhang 
1973b5df2d14SHong Zhang    Level: intermediate
1974b5df2d14SHong Zhang 
1975b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1976b5df2d14SHong Zhang 
1977b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1978b5df2d14SHong Zhang @*/
19797087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1980b5df2d14SHong Zhang {
19814ac538c5SBarry Smith   PetscErrorCode ierr;
1982b5df2d14SHong Zhang 
1983b5df2d14SHong Zhang   PetscFunctionBegin;
1984*6ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
1985*6ba663aaSJed Brown   PetscValidType(B,1);
1986*6ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
19874ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1988b5df2d14SHong Zhang   PetscFunctionReturn(0);
1989b5df2d14SHong Zhang }
1990b5df2d14SHong Zhang 
19914a2ae208SSatish Balay #undef __FUNCT__
19924a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1993a30f8f8cSSatish Balay /*@C
1994a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1995a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1996a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1997a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1998a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1999a30f8f8cSSatish Balay 
2000a30f8f8cSSatish Balay    Collective on MPI_Comm
2001a30f8f8cSSatish Balay 
2002a30f8f8cSSatish Balay    Input Parameters:
2003a30f8f8cSSatish Balay +  comm - MPI communicator
2004a30f8f8cSSatish Balay .  bs   - size of blockk
2005a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2006a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2007a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2008a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2009a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2010a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2011a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2012a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2013a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2014a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2015a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
20166d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
20176d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
20186d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
2019a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2020a30f8f8cSSatish Balay            submatrix (same for all local rows).
2021a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2022a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
2023a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
2024a30f8f8cSSatish Balay 
2025a30f8f8cSSatish Balay    Output Parameter:
2026a30f8f8cSSatish Balay .  A - the matrix
2027a30f8f8cSSatish Balay 
2028a30f8f8cSSatish Balay    Options Database Keys:
2029a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2030a30f8f8cSSatish Balay                      block calculations (much slower)
2031a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2032a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2033a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2034a30f8f8cSSatish Balay 
2035175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2036ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2037175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2038175b88e8SBarry Smith 
2039a30f8f8cSSatish Balay    Notes:
2040d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20416d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2042d1be2dadSMatthew Knepley 
2043a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2044a30f8f8cSSatish Balay    (possibly both).
2045a30f8f8cSSatish Balay 
2046a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2047a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2048a30f8f8cSSatish Balay 
204949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
205049a6f317SBarry Smith 
2051a30f8f8cSSatish Balay    Storage Information:
2052a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2053a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2054a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2055a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2056a30f8f8cSSatish Balay 
2057a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2058a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
2059a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2060a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2061a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2062a30f8f8cSSatish Balay 
2063a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2064a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2065a30f8f8cSSatish Balay 
2066a30f8f8cSSatish Balay .vb
2067a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2068a30f8f8cSSatish Balay           -------------------
2069c2fc9fa9SBarry Smith    row 3  |  . . . d d d o o o o o o
2070c2fc9fa9SBarry Smith    row 4  |  . . . d d d o o o o o o
2071c2fc9fa9SBarry Smith    row 5  |  . . . d d d o o o o o o
2072a30f8f8cSSatish Balay           -------------------
2073a30f8f8cSSatish Balay .ve
2074a30f8f8cSSatish Balay 
2075a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2076a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20776d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20786d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2079a30f8f8cSSatish Balay 
20806d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20816d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2082a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2083a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2084a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2085a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2086a30f8f8cSSatish Balay    matrices.
2087a30f8f8cSSatish Balay 
2088a30f8f8cSSatish Balay    Level: intermediate
2089a30f8f8cSSatish Balay 
2090a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2091a30f8f8cSSatish Balay 
2092a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2093a30f8f8cSSatish Balay @*/
2094a30f8f8cSSatish Balay 
20957087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2096a30f8f8cSSatish Balay {
20976849ba73SBarry Smith   PetscErrorCode ierr;
20981302d50aSBarry Smith   PetscMPIInt    size;
2099a30f8f8cSSatish Balay 
2100a30f8f8cSSatish Balay   PetscFunctionBegin;
2101f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2102f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2103273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2104273d9f13SBarry Smith   if (size > 1) {
2105b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2106b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2107273d9f13SBarry Smith   } else {
2108273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2109273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2110273d9f13SBarry Smith   }
2111a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2112a30f8f8cSSatish Balay }
2113a30f8f8cSSatish Balay 
2114a30f8f8cSSatish Balay 
21154a2ae208SSatish Balay #undef __FUNCT__
21164a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
21176849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2118a30f8f8cSSatish Balay {
2119a30f8f8cSSatish Balay   Mat            mat;
2120a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2121dfbe8321SBarry Smith   PetscErrorCode ierr;
2122d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2123387bc808SHong Zhang   PetscScalar    *array;
2124a30f8f8cSSatish Balay 
2125a30f8f8cSSatish Balay   PetscFunctionBegin;
2126a30f8f8cSSatish Balay   *newmat       = 0;
21277adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2128d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
21297adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
21301d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
21311e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
21321e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2133e1b6402fSHong Zhang 
2134d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2135273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
213682327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21377fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21387fff6886SHong Zhang 
2139b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2140a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2141a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2142a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2143a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2144a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2145a30f8f8cSSatish Balay 
2146899cda47SBarry Smith 
2147a30f8f8cSSatish Balay   a->size         = oldmat->size;
2148a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2149a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2150a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2151a30f8f8cSSatish Balay   a->rowindices   = 0;
2152a30f8f8cSSatish Balay   a->rowvalues    = 0;
2153a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2154a30f8f8cSSatish Balay   a->barray       = 0;
2155899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2156899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2157899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2158899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2159a30f8f8cSSatish Balay 
2160a30f8f8cSSatish Balay   /* hash table stuff */
2161a30f8f8cSSatish Balay   a->ht           = 0;
2162a30f8f8cSSatish Balay   a->hd           = 0;
2163a30f8f8cSSatish Balay   a->ht_size      = 0;
2164a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2165a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2166a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2167a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2168a30f8f8cSSatish Balay 
2169899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2170a30f8f8cSSatish Balay   if (oldmat->colmap) {
2171a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2172a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2173a30f8f8cSSatish Balay #else
21741302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
217552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21761302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2177a30f8f8cSSatish Balay #endif
2178a30f8f8cSSatish Balay   } else a->colmap = 0;
2179387bc808SHong Zhang 
2180a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21811302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
218252e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21831302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2184a30f8f8cSSatish Balay   } else a->garray = 0;
2185a30f8f8cSSatish Balay 
2186533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2187a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
218852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
219052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
219182327fa8SHong Zhang 
219282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
219352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
219482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
219552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2196387bc808SHong Zhang 
2197387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21981ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2199387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2200387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
22011ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
22021ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2203387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
22041ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
220552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
220652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
220752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
220852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
220952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2210387bc808SHong Zhang 
2211387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2212387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2213387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
221452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
221582327fa8SHong Zhang 
2216a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
221752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2218a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
221952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
22207adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay   *newmat = mat;
2222a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2223a30f8f8cSSatish Balay }
2224a30f8f8cSSatish Balay 
22254a2ae208SSatish Balay #undef __FUNCT__
22265bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2227112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
222895936485SShri Abhyankar {
222995936485SShri Abhyankar   PetscErrorCode ierr;
223095936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
223195936485SShri Abhyankar   PetscScalar    *vals,*buf;
223295936485SShri Abhyankar   MPI_Comm       comm = ((PetscObject)viewer)->comm;
223395936485SShri Abhyankar   MPI_Status     status;
223495936485SShri Abhyankar   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
223595936485SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
223695936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
223795936485SShri Abhyankar   PetscInt       bs=1,Mbs,mbs,extra_rows;
223895936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
223995936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
224095936485SShri Abhyankar   int            fd;
224195936485SShri Abhyankar 
224295936485SShri Abhyankar   PetscFunctionBegin;
224395936485SShri Abhyankar   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
224495936485SShri Abhyankar     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
224595936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
224695936485SShri Abhyankar 
224795936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
224895936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
224995936485SShri Abhyankar   if (!rank) {
225095936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
225195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
225295936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
225395936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
225495936485SShri Abhyankar   }
225595936485SShri Abhyankar 
225695936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
225795936485SShri Abhyankar 
225895936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
225995936485SShri Abhyankar   M = header[1]; N = header[2];
226095936485SShri Abhyankar 
226195936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
226295936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
226395936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
226495936485SShri Abhyankar 
226595936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
226695936485SShri Abhyankar   if (sizesset) {
226795936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
226895936485SShri Abhyankar   }
2269abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2270abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
227195936485SShri Abhyankar 
227295936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
227395936485SShri Abhyankar 
227495936485SShri Abhyankar   /*
227595936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
227695936485SShri Abhyankar      divisible by the blocksize
227795936485SShri Abhyankar   */
227895936485SShri Abhyankar   Mbs        = M/bs;
227995936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
228095936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
228195936485SShri Abhyankar   else                  Mbs++;
228295936485SShri Abhyankar   if (extra_rows &&!rank) {
228395936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
228495936485SShri Abhyankar   }
228595936485SShri Abhyankar 
228695936485SShri Abhyankar   /* determine ownership of all rows */
228795936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
228895936485SShri Abhyankar     mbs        = Mbs/size + ((Mbs % size) > rank);
228995936485SShri Abhyankar     m          = mbs*bs;
229095936485SShri Abhyankar   } else { /* User Set */
229195936485SShri Abhyankar     m          = newmat->rmap->n;
229295936485SShri Abhyankar     mbs        = m/bs;
229395936485SShri Abhyankar   }
229495936485SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
229595936485SShri Abhyankar   mmbs       = PetscMPIIntCast(mbs);
229695936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
229795936485SShri Abhyankar   rowners[0] = 0;
229895936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
229995936485SShri Abhyankar   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
230095936485SShri Abhyankar   rstart = rowners[rank];
230195936485SShri Abhyankar   rend   = rowners[rank+1];
230295936485SShri Abhyankar 
230395936485SShri Abhyankar   /* distribute row lengths to all processors */
230495936485SShri Abhyankar   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
230595936485SShri Abhyankar   if (!rank) {
230695936485SShri Abhyankar     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
230795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
230895936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
230995936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
231095936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
231195936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
231295936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
231395936485SShri Abhyankar   } else {
231495936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
231595936485SShri Abhyankar   }
231695936485SShri Abhyankar 
231795936485SShri Abhyankar   if (!rank) {   /* procs[0] */
231895936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
231995936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
232095936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
232195936485SShri Abhyankar     for (i=0; i<size; i++) {
232295936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
232395936485SShri Abhyankar         procsnz[i] += rowlengths[j];
232495936485SShri Abhyankar       }
232595936485SShri Abhyankar     }
232695936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
232795936485SShri Abhyankar 
232895936485SShri Abhyankar     /* determine max buffer needed and allocate it */
232995936485SShri Abhyankar     maxnz = 0;
233095936485SShri Abhyankar     for (i=0; i<size; i++) {
233195936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
233295936485SShri Abhyankar     }
233395936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
233495936485SShri Abhyankar 
233595936485SShri Abhyankar     /* read in my part of the matrix column indices  */
233695936485SShri Abhyankar     nz     = procsnz[0];
233795936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
233895936485SShri Abhyankar     mycols = ibuf;
233995936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
234095936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
234195936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
234295936485SShri Abhyankar 
234395936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
234495936485SShri Abhyankar     for (i=1; i<size-1; i++) {
234595936485SShri Abhyankar       nz   = procsnz[i];
234695936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
234795936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
234895936485SShri Abhyankar     }
234995936485SShri Abhyankar     /* read in the stuff for the last proc */
235095936485SShri Abhyankar     if (size != 1) {
235195936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
235295936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
235395936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
235495936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
235595936485SShri Abhyankar     }
235695936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
235795936485SShri Abhyankar   } else {  /* procs[i], i>0 */
235895936485SShri Abhyankar     /* determine buffer space needed for message */
235995936485SShri Abhyankar     nz = 0;
236095936485SShri Abhyankar     for (i=0; i<m; i++) {
236195936485SShri Abhyankar       nz += locrowlens[i];
236295936485SShri Abhyankar     }
236395936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
236495936485SShri Abhyankar     mycols = ibuf;
236595936485SShri Abhyankar     /* receive message of column indices*/
236695936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
236795936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
236895936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
236995936485SShri Abhyankar   }
237095936485SShri Abhyankar 
237195936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
237295936485SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
237395936485SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
237495936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
237595936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
237695936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
237795936485SShri Abhyankar   rowcount = 0;
237895936485SShri Abhyankar   nzcount  = 0;
237995936485SShri Abhyankar   for (i=0; i<mbs; i++) {
238095936485SShri Abhyankar     dcount  = 0;
238195936485SShri Abhyankar     odcount = 0;
238295936485SShri Abhyankar     for (j=0; j<bs; j++) {
238395936485SShri Abhyankar       kmax = locrowlens[rowcount];
238495936485SShri Abhyankar       for (k=0; k<kmax; k++) {
238595936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
238695936485SShri Abhyankar         if (!mask[tmp]) {
238795936485SShri Abhyankar           mask[tmp] = 1;
238895936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
238995936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
239095936485SShri Abhyankar         }
239195936485SShri Abhyankar       }
239295936485SShri Abhyankar       rowcount++;
239395936485SShri Abhyankar     }
239495936485SShri Abhyankar 
239595936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
239695936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
239795936485SShri Abhyankar 
239895936485SShri Abhyankar     /* zero out the mask elements we set */
239995936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
240095936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
240195936485SShri Abhyankar   }
240295936485SShri Abhyankar     if (!sizesset) {
240395936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
240495936485SShri Abhyankar   }
240595936485SShri Abhyankar   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
240695936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
240795936485SShri Abhyankar 
240895936485SShri Abhyankar   if (!rank) {
240995936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
241095936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
241195936485SShri Abhyankar     nz = procsnz[0];
241295936485SShri Abhyankar     vals = buf;
241395936485SShri Abhyankar     mycols = ibuf;
241495936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
241595936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
241695936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
241795936485SShri Abhyankar 
241895936485SShri Abhyankar     /* insert into matrix */
241995936485SShri Abhyankar     jj      = rstart*bs;
242095936485SShri Abhyankar     for (i=0; i<m; i++) {
242195936485SShri Abhyankar       ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
242295936485SShri Abhyankar       mycols += locrowlens[i];
242395936485SShri Abhyankar       vals   += locrowlens[i];
242495936485SShri Abhyankar       jj++;
242595936485SShri Abhyankar     }
242695936485SShri Abhyankar 
242795936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
242895936485SShri Abhyankar     for (i=1; i<size-1; i++) {
242995936485SShri Abhyankar       nz   = procsnz[i];
243095936485SShri Abhyankar       vals = buf;
243195936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
243295936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
243395936485SShri Abhyankar     }
243495936485SShri Abhyankar     /* the last proc */
243595936485SShri Abhyankar     if (size != 1){
243695936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
243795936485SShri Abhyankar       vals = buf;
243895936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
243995936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
244095936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
244195936485SShri Abhyankar     }
244295936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
244395936485SShri Abhyankar 
244495936485SShri Abhyankar   } else {
244595936485SShri Abhyankar     /* receive numeric values */
244695936485SShri Abhyankar     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
244795936485SShri Abhyankar 
244895936485SShri Abhyankar     /* receive message of values*/
244995936485SShri Abhyankar     vals   = buf;
245095936485SShri Abhyankar     mycols = ibuf;
245195936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
245295936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
245395936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
245495936485SShri Abhyankar 
245595936485SShri Abhyankar     /* insert into matrix */
245695936485SShri Abhyankar     jj      = rstart*bs;
245795936485SShri Abhyankar     for (i=0; i<m; i++) {
245895936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
245995936485SShri Abhyankar       mycols += locrowlens[i];
246095936485SShri Abhyankar       vals   += locrowlens[i];
246195936485SShri Abhyankar       jj++;
246295936485SShri Abhyankar     }
246395936485SShri Abhyankar   }
246495936485SShri Abhyankar 
246595936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
246695936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
246795936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
246895936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
246995936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
247095936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
247195936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
247295936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
247395936485SShri Abhyankar   PetscFunctionReturn(0);
247495936485SShri Abhyankar }
247595936485SShri Abhyankar 
247695936485SShri Abhyankar #undef __FUNCT__
24774a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2478dcf5cc72SBarry Smith /*XXXXX@
2479a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2480a30f8f8cSSatish Balay 
2481a30f8f8cSSatish Balay    Input Parameters:
2482a30f8f8cSSatish Balay .  mat  - the matrix
2483a30f8f8cSSatish Balay .  fact - factor
2484a30f8f8cSSatish Balay 
2485c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2486a30f8f8cSSatish Balay 
2487a30f8f8cSSatish Balay    Level: advanced
2488a30f8f8cSSatish Balay 
2489a30f8f8cSSatish Balay   Notes:
2490a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2491a30f8f8cSSatish Balay 
2492a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2493a30f8f8cSSatish Balay 
2494a30f8f8cSSatish Balay .seealso: MatSetOption()
2495dcf5cc72SBarry Smith @XXXXX*/
2496dcf5cc72SBarry Smith 
249724d5174aSHong Zhang 
24984a2ae208SSatish Balay #undef __FUNCT__
2499985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2500985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
250124d5174aSHong Zhang {
250224d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2503f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2504ca54ac64SHong Zhang   PetscReal      atmp;
250587828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2506dfbe8321SBarry Smith   PetscErrorCode ierr;
25071302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25081302d50aSBarry Smith   PetscMPIInt    rank,size;
25091302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
251087828ca2SBarry Smith   PetscScalar    *va;
25118a1c53f2SBarry Smith   MatScalar      *ba;
2512f4c0e9e4SHong Zhang   MPI_Status     stat;
251324d5174aSHong Zhang 
251424d5174aSHong Zhang   PetscFunctionBegin;
2515e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2516985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
25171ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2518f4c0e9e4SHong Zhang 
25197adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
25207adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2521f4c0e9e4SHong Zhang 
2522d0f46423SBarry Smith   bs   = A->rmap->bs;
2523f4c0e9e4SHong Zhang   mbs  = a->mbs;
2524f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2525f4c0e9e4SHong Zhang   ba   = b->a;
2526f4c0e9e4SHong Zhang   bi   = b->i;
2527f4c0e9e4SHong Zhang   bj   = b->j;
2528f4c0e9e4SHong Zhang 
2529f4c0e9e4SHong Zhang   /* find ownerships */
2530d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2531f4c0e9e4SHong Zhang 
2532f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
253382502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2534ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2535f4c0e9e4SHong Zhang 
2536f4c0e9e4SHong Zhang   /* row_max for B */
2537b8475685SHong Zhang   if (rank != size-1){
2538f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2539f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2540f4c0e9e4SHong Zhang       brow  = bs*i;
2541f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2542f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2543f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2544ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
254504d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2546f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2547f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2548ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2549ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2550f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2551f4c0e9e4SHong Zhang           }
2552f4c0e9e4SHong Zhang         }
2553f4c0e9e4SHong Zhang         bj++;
2554f4c0e9e4SHong Zhang       }
2555f4c0e9e4SHong Zhang     }
2556f4c0e9e4SHong Zhang 
2557f4c0e9e4SHong Zhang     /* send values to its owners */
2558f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2559f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2560ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
25617adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2562ca54ac64SHong Zhang     }
2563f4c0e9e4SHong Zhang   }
2564f4c0e9e4SHong Zhang 
2565f4c0e9e4SHong Zhang   /* receive values */
2566ca54ac64SHong Zhang   if (rank){
2567f4c0e9e4SHong Zhang     rvalues = work;
2568ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2569f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
25707adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2571f4c0e9e4SHong Zhang       /* process values */
2572f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2573ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2574f4c0e9e4SHong Zhang       }
2575f4c0e9e4SHong Zhang     }
2576ca54ac64SHong Zhang   }
2577f4c0e9e4SHong Zhang 
25781ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2579ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
258024d5174aSHong Zhang   PetscFunctionReturn(0);
258124d5174aSHong Zhang }
25822798e883SHong Zhang 
25832798e883SHong Zhang #undef __FUNCT__
258441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
258541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25862798e883SHong Zhang {
25872798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2588dfbe8321SBarry Smith   PetscErrorCode    ierr;
2589d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25903649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2591ffe4fb16SHong Zhang   Vec               bb1;
25923649974fSBarry Smith   const PetscScalar *b;
2593ffe4fb16SHong Zhang 
2594ffe4fb16SHong Zhang   PetscFunctionBegin;
2595e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2596e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2597ffe4fb16SHong Zhang 
2598a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
259941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2600a2b30743SBarry Smith     PetscFunctionReturn(0);
2601a2b30743SBarry Smith   }
2602a2b30743SBarry Smith 
2603ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2604ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
260541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2606ffe4fb16SHong Zhang       its--;
2607ffe4fb16SHong Zhang     }
2608ffe4fb16SHong Zhang 
2609ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2610ffe4fb16SHong Zhang     while (its--){
2611ffe4fb16SHong Zhang 
2612ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2613ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2614ffe4fb16SHong Zhang 
2615ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26161ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
26171ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2618ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26191ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2620ffe4fb16SHong Zhang 
2621efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2622ffe4fb16SHong Zhang 
2623ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26241ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
26253649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2626ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26271ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2628ffe4fb16SHong Zhang 
2629ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2630fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2631ffe4fb16SHong Zhang 
2632ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26331ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2634a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2635ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2636ffe4fb16SHong Zhang 
2637ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2638ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2639ffe4fb16SHong Zhang 
2640ffe4fb16SHong Zhang       /* local diagonal sweep */
264141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2642ffe4fb16SHong Zhang     }
26436bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2644fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
264541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2646fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
264741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2648fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2649fa22f6d0SBarry Smith     Vec               xx1;
2650ace3abfcSBarry Smith     PetscBool         hasop;
265120f1ed55SBarry Smith     const PetscScalar *diag;
2652887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
265320f1ed55SBarry Smith     PetscInt          i,n;
2654fa22f6d0SBarry Smith 
2655fa22f6d0SBarry Smith     if (!mat->xx1) {
2656fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2657fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2658fa22f6d0SBarry Smith     }
2659fa22f6d0SBarry Smith     xx1 = mat->xx1;
2660fa22f6d0SBarry Smith     bb1 = mat->bb1;
2661fa22f6d0SBarry Smith 
266241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2663fa22f6d0SBarry Smith 
2664fa22f6d0SBarry Smith     if (!mat->diag) {
2665effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2666fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2667fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2668fa22f6d0SBarry Smith     }
2669fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2670fa22f6d0SBarry Smith 
2671fa22f6d0SBarry Smith     if (hasop) {
2672fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2673887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
267420f1ed55SBarry Smith     } else {
267520f1ed55SBarry Smith       /*
267620f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
267720f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2678887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
267920f1ed55SBarry Smith       */
268020f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26813649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26823649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
268320f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
268420f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2685887ee2caSBarry Smith       if (omega == 1.0) {
268620f1ed55SBarry Smith 	for (i=0; i<n; i++) {
268720f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
268820f1ed55SBarry Smith 	}
268920f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2690887ee2caSBarry Smith       } else {
2691887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2692887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2693887ee2caSBarry Smith 	}
2694887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2695887ee2caSBarry Smith       }
269620f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26973649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26983649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
269920f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
270020f1ed55SBarry Smith     }
2701fa22f6d0SBarry Smith 
2702fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2703fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2704fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2705fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2706fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2707fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2708fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2709fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2710fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2711fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2712effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2713fa22f6d0SBarry Smith 
2714fa22f6d0SBarry Smith     /* local sweep */
271541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2716fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2717ffe4fb16SHong Zhang   } else {
2718e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2719ffe4fb16SHong Zhang   }
2720ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2721ffe4fb16SHong Zhang }
2722ffe4fb16SHong Zhang 
2723ffe4fb16SHong Zhang #undef __FUNCT__
272441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
272541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2726ffe4fb16SHong Zhang {
2727ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2728dfbe8321SBarry Smith   PetscErrorCode ierr;
27292798e883SHong Zhang   Vec            lvec1,bb1;
27302798e883SHong Zhang 
27312798e883SHong Zhang   PetscFunctionBegin;
2732e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2733e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27342798e883SHong Zhang 
2735c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
27362798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
273741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27382798e883SHong Zhang       its--;
27392798e883SHong Zhang     }
27402798e883SHong Zhang 
27412798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27422798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27432798e883SHong Zhang     while (its--){
2744ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27452798e883SHong Zhang 
27462798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27472798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2748efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27492798e883SHong Zhang 
2750ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27512798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2752ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27532798e883SHong Zhang 
27542798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2755efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27562798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27572798e883SHong Zhang 
2758ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27592798e883SHong Zhang 
2760c14dc6b6SHong Zhang       /* diagonal sweep */
276141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27622798e883SHong Zhang     }
27636bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27646bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27656bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27662798e883SHong Zhang   PetscFunctionReturn(0);
27672798e883SHong Zhang }
27682798e883SHong Zhang 
2769dfb205c3SBarry Smith #undef __FUNCT__
2770dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2771dfb205c3SBarry Smith /*@
2772dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2773dfb205c3SBarry Smith          CSR format the local rows.
2774dfb205c3SBarry Smith 
2775dfb205c3SBarry Smith    Collective on MPI_Comm
2776dfb205c3SBarry Smith 
2777dfb205c3SBarry Smith    Input Parameters:
2778dfb205c3SBarry Smith +  comm - MPI communicator
2779dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2780dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2781dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2782dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2783dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2784dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2785dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2786dfb205c3SBarry Smith .   i - row indices
2787dfb205c3SBarry Smith .   j - column indices
2788dfb205c3SBarry Smith -   a - matrix values
2789dfb205c3SBarry Smith 
2790dfb205c3SBarry Smith    Output Parameter:
2791dfb205c3SBarry Smith .   mat - the matrix
2792dfb205c3SBarry Smith 
2793dfb205c3SBarry Smith    Level: intermediate
2794dfb205c3SBarry Smith 
2795dfb205c3SBarry Smith    Notes:
2796dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2797dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2798dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2799dfb205c3SBarry Smith 
2800dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2801dfb205c3SBarry Smith 
2802dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2803dfb205c3SBarry Smith 
2804dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
2805dfb205c3SBarry Smith           MPIAIJ, MatCreateMPIAIJ(), MatCreateMPIAIJWithSplitArrays()
2806dfb205c3SBarry Smith @*/
28077087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2808dfb205c3SBarry Smith {
2809dfb205c3SBarry Smith   PetscErrorCode ierr;
2810dfb205c3SBarry Smith 
2811dfb205c3SBarry Smith 
2812dfb205c3SBarry Smith  PetscFunctionBegin;
2813dfb205c3SBarry Smith   if (i[0]) {
2814dfb205c3SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2815dfb205c3SBarry Smith   }
2816dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2817dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2818dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2819dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2820dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2821dfb205c3SBarry Smith   PetscFunctionReturn(0);
2822dfb205c3SBarry Smith }
2823dfb205c3SBarry Smith 
2824dfb205c3SBarry Smith 
2825dfb205c3SBarry Smith #undef __FUNCT__
2826dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2827dfb205c3SBarry Smith /*@C
2828dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2829dfb205c3SBarry Smith    (the default parallel PETSc format).
2830dfb205c3SBarry Smith 
2831dfb205c3SBarry Smith    Collective on MPI_Comm
2832dfb205c3SBarry Smith 
2833dfb205c3SBarry Smith    Input Parameters:
2834dfb205c3SBarry Smith +  A - the matrix
2835dfb205c3SBarry Smith .  bs - the block size
2836dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2837dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2838dfb205c3SBarry Smith -  v - optional values in the matrix
2839dfb205c3SBarry Smith 
2840dfb205c3SBarry Smith    Level: developer
2841dfb205c3SBarry Smith 
2842dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2843dfb205c3SBarry Smith 
2844dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2845dfb205c3SBarry Smith @*/
28467087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2847dfb205c3SBarry Smith {
28484ac538c5SBarry Smith   PetscErrorCode ierr;
2849dfb205c3SBarry Smith 
2850dfb205c3SBarry Smith   PetscFunctionBegin;
28514ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2852dfb205c3SBarry Smith   PetscFunctionReturn(0);
2853dfb205c3SBarry Smith }
2854dfb205c3SBarry Smith 
2855dfb205c3SBarry Smith 
2856