1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 909573ac7SBarry Smith extern PetscErrorCode DisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay EXTERN_C_BEGIN 244a2ae208SSatish Balay #undef __FUNCT__ 254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 267087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 27a30f8f8cSSatish Balay { 28f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 29dfbe8321SBarry Smith PetscErrorCode ierr; 30a30f8f8cSSatish Balay 31a30f8f8cSSatish Balay PetscFunctionBegin; 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 34a30f8f8cSSatish Balay PetscFunctionReturn(0); 35a30f8f8cSSatish Balay } 36a30f8f8cSSatish Balay EXTERN_C_END 37a30f8f8cSSatish Balay 38a30f8f8cSSatish Balay EXTERN_C_BEGIN 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 417087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay EXTERN_C_END 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 55a30f8f8cSSatish Balay { \ 56a30f8f8cSSatish Balay \ 57a30f8f8cSSatish Balay brow = row/bs; \ 58a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 59a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 60a30f8f8cSSatish Balay bcol = col/bs; \ 61a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 62a30f8f8cSSatish Balay low = 0; high = nrow; \ 63a30f8f8cSSatish Balay while (high-low > 3) { \ 64a30f8f8cSSatish Balay t = (low+high)/2; \ 65a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 66a30f8f8cSSatish Balay else low = t; \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 69a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 70a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 71a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 72a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 73a30f8f8cSSatish Balay else *bap = value; \ 74a30f8f8cSSatish Balay goto a_noinsert; \ 75a30f8f8cSSatish Balay } \ 76a30f8f8cSSatish Balay } \ 77a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 78e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 79fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 80a30f8f8cSSatish Balay N = nrow++ - 1; \ 81a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 82a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 83a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 84a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 85a30f8f8cSSatish Balay } \ 86a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 87a30f8f8cSSatish Balay rp[_i] = bcol; \ 88a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 89a30f8f8cSSatish Balay a_noinsert:; \ 90a30f8f8cSSatish Balay ailen[brow] = nrow; \ 91a30f8f8cSSatish Balay } 92e5e170daSBarry Smith 93a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 94a30f8f8cSSatish Balay { \ 95a30f8f8cSSatish Balay brow = row/bs; \ 96a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 97a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 98a30f8f8cSSatish Balay bcol = col/bs; \ 99a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 100a30f8f8cSSatish Balay low = 0; high = nrow; \ 101a30f8f8cSSatish Balay while (high-low > 3) { \ 102a30f8f8cSSatish Balay t = (low+high)/2; \ 103a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 104a30f8f8cSSatish Balay else low = t; \ 105a30f8f8cSSatish Balay } \ 106a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 107a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 108a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 109a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 110a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 111a30f8f8cSSatish Balay else *bap = value; \ 112a30f8f8cSSatish Balay goto b_noinsert; \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 116e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 117fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 118a30f8f8cSSatish Balay N = nrow++ - 1; \ 119a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 120a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 121a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 122a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay } \ 124a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 125a30f8f8cSSatish Balay rp[_i] = bcol; \ 126a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 127a30f8f8cSSatish Balay b_noinsert:; \ 128a30f8f8cSSatish Balay bilen[brow] = nrow; \ 129a30f8f8cSSatish Balay } 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 132a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 133a30f8f8cSSatish Balay */ 1344a2ae208SSatish Balay #undef __FUNCT__ 135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 137a30f8f8cSSatish Balay { 138a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 139a30f8f8cSSatish Balay MatScalar value; 140ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 141dfbe8321SBarry Smith PetscErrorCode ierr; 1421302d50aSBarry Smith PetscInt i,j,row,col; 143d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 144d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 145d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 146a30f8f8cSSatish Balay 147a30f8f8cSSatish Balay /* Some Variables required in the macro */ 148a30f8f8cSSatish Balay Mat A = baij->A; 149a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1501302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 151a30f8f8cSSatish Balay MatScalar *aa=a->a; 152a30f8f8cSSatish Balay 153a30f8f8cSSatish Balay Mat B = baij->B; 154a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1551302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 156a30f8f8cSSatish Balay MatScalar *ba=b->a; 157a30f8f8cSSatish Balay 1581302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1591302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 160a30f8f8cSSatish Balay MatScalar *ap,*bap; 161a30f8f8cSSatish Balay 162a30f8f8cSSatish Balay /* for stash */ 163910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 164910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 16771fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 168a30f8f8cSSatish Balay if (!baij->donotstash){ 16959ffdab8SBarry Smith if (n > baij->n_loc) { 17059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17259ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith baij->n_loc = n; 17559ffdab8SBarry Smith } 17659ffdab8SBarry Smith in_loc = baij->in_loc; 17759ffdab8SBarry Smith v_loc = baij->v_loc; 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 180a30f8f8cSSatish Balay for (i=0; i<m; i++) { 181a30f8f8cSSatish Balay if (im[i] < 0) continue; 1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 183e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 184a30f8f8cSSatish Balay #endif 185a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 186a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 187a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18801b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 18901b2bd88SHong Zhang if (a->ignore_ltriangular){ 19001b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19101b2bd88SHong Zhang } else { 192e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19301b2bd88SHong Zhang } 19401b2bd88SHong Zhang } 195a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 196a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 197a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 198a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 199a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 200a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 201a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 202a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 204cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 205a30f8f8cSSatish Balay #endif 206a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 207a30f8f8cSSatish Balay if (mat->was_assembled) { 208a30f8f8cSSatish Balay if (!baij->colmap) { 209653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 210a30f8f8cSSatish Balay } 211a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 212a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21371730473SSatish Balay col = col - 1; 214a30f8f8cSSatish Balay #else 21571730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 216a30f8f8cSSatish Balay #endif 217a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 218a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 219a30f8f8cSSatish Balay col = in[j]; 220a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 221a30f8f8cSSatish Balay B = baij->B; 222a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 223a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 224a30f8f8cSSatish Balay ba=b->a; 22571730473SSatish Balay } else col += in[j]%bs; 226a30f8f8cSSatish Balay } else col = in[j]; 227a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 228a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 229a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 230a30f8f8cSSatish Balay } 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay } else { /* off processor entry */ 2334cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 234a30f8f8cSSatish Balay if (!baij->donotstash) { 235a30f8f8cSSatish Balay n_loc = 0; 236a30f8f8cSSatish Balay for (j=0; j<n; j++){ 237f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 238a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 239a30f8f8cSSatish Balay if (roworiented) { 240a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 241a30f8f8cSSatish Balay } else { 242a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 243a30f8f8cSSatish Balay } 244a30f8f8cSSatish Balay n_loc++; 245a30f8f8cSSatish Balay } 246b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 247a30f8f8cSSatish Balay } 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay PetscFunctionReturn(0); 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay 2534a2ae208SSatish Balay #undef __FUNCT__ 254dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 255dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 256a30f8f8cSSatish Balay { 2570880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 258f15d580aSBarry Smith const MatScalar *value; 259f15d580aSBarry Smith MatScalar *barray=baij->barray; 260ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 261dfbe8321SBarry Smith PetscErrorCode ierr; 262899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 263899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 264d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2650880e062SHong Zhang 266a30f8f8cSSatish Balay PetscFunctionBegin; 2670880e062SHong Zhang if(!barray) { 2680880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2690880e062SHong Zhang baij->barray = barray; 2700880e062SHong Zhang } 2710880e062SHong Zhang 2720880e062SHong Zhang if (roworiented) { 2730880e062SHong Zhang stepval = (n-1)*bs; 2740880e062SHong Zhang } else { 2750880e062SHong Zhang stepval = (m-1)*bs; 2760880e062SHong Zhang } 2770880e062SHong Zhang for (i=0; i<m; i++) { 2780880e062SHong Zhang if (im[i] < 0) continue; 2792515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 280e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2810880e062SHong Zhang #endif 2820880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2830880e062SHong Zhang row = im[i] - rstart; 2840880e062SHong Zhang for (j=0; j<n; j++) { 285f3f98c53SJed Brown if (im[i] > in[j]) { 286f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 287e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 288f3f98c53SJed Brown } 2890880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2900880e062SHong Zhang if ((roworiented) && (n == 1)) { 291f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2920880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 293f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2940880e062SHong Zhang } else { /* Here a copy is required */ 2950880e062SHong Zhang if (roworiented) { 2960880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2970880e062SHong Zhang } else { 2980880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2990880e062SHong Zhang } 3000880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3010880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3020880e062SHong Zhang *barray++ = *value++; 3030880e062SHong Zhang } 3040880e062SHong Zhang } 3050880e062SHong Zhang barray -=bs2; 3060880e062SHong Zhang } 3070880e062SHong Zhang 3080880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3090880e062SHong Zhang col = in[j] - cstart; 3100880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3110880e062SHong Zhang } 3120880e062SHong Zhang else if (in[j] < 0) continue; 3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 314cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3150880e062SHong Zhang #endif 3160880e062SHong Zhang else { 3170880e062SHong Zhang if (mat->was_assembled) { 3180880e062SHong Zhang if (!baij->colmap) { 319653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3200880e062SHong Zhang } 3210880e062SHong Zhang 3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3230880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3241302d50aSBarry Smith { PetscInt data; 3250880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 326e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang } 3280880e062SHong Zhang #else 329e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3300880e062SHong Zhang #endif 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3330880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3340880e062SHong Zhang col = (col - 1)/bs; 3350880e062SHong Zhang #else 3360880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3370880e062SHong Zhang #endif 3380880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3390880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3400880e062SHong Zhang col = in[j]; 3410880e062SHong Zhang } 3420880e062SHong Zhang } 3430880e062SHong Zhang else col = in[j]; 344e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3450880e062SHong Zhang } 3460880e062SHong Zhang } 3470880e062SHong Zhang } else { 3484cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3490880e062SHong Zhang if (!baij->donotstash) { 3500880e062SHong Zhang if (roworiented) { 3510880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3520880e062SHong Zhang } else { 3530880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3540880e062SHong Zhang } 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang } 3580880e062SHong Zhang PetscFunctionReturn(0); 359a30f8f8cSSatish Balay } 360a30f8f8cSSatish Balay 3614a2ae208SSatish Balay #undef __FUNCT__ 3624a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3631302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 364a30f8f8cSSatish Balay { 365f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3666849ba73SBarry Smith PetscErrorCode ierr; 367d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 368d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 369a30f8f8cSSatish Balay 370a30f8f8cSSatish Balay PetscFunctionBegin; 371a30f8f8cSSatish Balay for (i=0; i<m; i++) { 372e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 373e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 374a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 375a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 376a30f8f8cSSatish Balay for (j=0; j<n; j++) { 377e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 378e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 379a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 380a30f8f8cSSatish Balay col = idxn[j] - bscstart; 381c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } else { 383a30f8f8cSSatish Balay if (!baij->colmap) { 384653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 385a30f8f8cSSatish Balay } 386a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 387a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 388a30f8f8cSSatish Balay data --; 389a30f8f8cSSatish Balay #else 390a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 391a30f8f8cSSatish Balay #endif 392a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 393a30f8f8cSSatish Balay else { 394a30f8f8cSSatish Balay col = data + idxn[j]%bs; 395e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } else { 400e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay PetscFunctionReturn(0); 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay 4064a2ae208SSatish Balay #undef __FUNCT__ 4074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 408dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 409a30f8f8cSSatish Balay { 410a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 411dfbe8321SBarry Smith PetscErrorCode ierr; 412a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 413a30f8f8cSSatish Balay 414a30f8f8cSSatish Balay PetscFunctionBegin; 415a30f8f8cSSatish Balay if (baij->size == 1) { 416a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 417a30f8f8cSSatish Balay } else { 418a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 419f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 420a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 421a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 422a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 423a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 424d9822059SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4258f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 426a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4270b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4280b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4290b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4300b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 431899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 432d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4330b8dc8d2SHong Zhang MatScalar *v; 4340b8dc8d2SHong Zhang 43574ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 436d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4370b8dc8d2SHong Zhang /* Amat */ 4380b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4390b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4400b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4410b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4420b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4430b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4440b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4450b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4460b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4470b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4480b8dc8d2SHong Zhang /* non-diagonal block */ 4490b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang } 4520b8dc8d2SHong Zhang } 4530b8dc8d2SHong Zhang } 4540b8dc8d2SHong Zhang /* Bmat */ 4550b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4560b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4570b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4580b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4590b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4600b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4610b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4620b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4630b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4640b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4650b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4660b8dc8d2SHong Zhang } 4670b8dc8d2SHong Zhang } 4680b8dc8d2SHong Zhang } 4690b8dc8d2SHong Zhang } 470d9822059SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4710b8dc8d2SHong Zhang *norm = 0.0; 472d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4730b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4740b8dc8d2SHong Zhang } 47574ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 476a30f8f8cSSatish Balay } else { 477e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 478a30f8f8cSSatish Balay } 479a30f8f8cSSatish Balay } 480a30f8f8cSSatish Balay PetscFunctionReturn(0); 481a30f8f8cSSatish Balay } 482a30f8f8cSSatish Balay 4834a2ae208SSatish Balay #undef __FUNCT__ 4844a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 485dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 486a30f8f8cSSatish Balay { 487a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 488dfbe8321SBarry Smith PetscErrorCode ierr; 4891302d50aSBarry Smith PetscInt nstash,reallocs; 490a30f8f8cSSatish Balay InsertMode addv; 491a30f8f8cSSatish Balay 492a30f8f8cSSatish Balay PetscFunctionBegin; 4934cb17eb5SBarry Smith if (baij->donotstash || mat->nooffprocentries) { 494a30f8f8cSSatish Balay PetscFunctionReturn(0); 495a30f8f8cSSatish Balay } 496a30f8f8cSSatish Balay 497a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4987adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 499e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 500a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 501a30f8f8cSSatish Balay 502d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5031e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 504a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5051e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 506a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5071e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 508a30f8f8cSSatish Balay PetscFunctionReturn(0); 509a30f8f8cSSatish Balay } 510a30f8f8cSSatish Balay 5114a2ae208SSatish Balay #undef __FUNCT__ 5124a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 513dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 514a30f8f8cSSatish Balay { 515a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 516a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5176849ba73SBarry Smith PetscErrorCode ierr; 51813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 519e44c0bd4SBarry Smith PetscInt *row,*col; 520ace3abfcSBarry Smith PetscBool other_disassembled; 52113f74950SBarry Smith PetscMPIInt n; 522ace3abfcSBarry Smith PetscBool r1,r2,r3; 523a30f8f8cSSatish Balay MatScalar *val; 524a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 525a30f8f8cSSatish Balay 52691c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 527a30f8f8cSSatish Balay PetscFunctionBegin; 528a30f8f8cSSatish Balay 5294cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 530a30f8f8cSSatish Balay while (1) { 531a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 532a30f8f8cSSatish Balay if (!flg) break; 533a30f8f8cSSatish Balay 534a30f8f8cSSatish Balay for (i=0; i<n;) { 535a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 536a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 537a30f8f8cSSatish Balay if (j < n) ncols = j-i; 538a30f8f8cSSatish Balay else ncols = n-i; 539a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 540dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 541a30f8f8cSSatish Balay i = j; 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay } 544a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 545a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 546a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 547a30f8f8cSSatish Balay restore the original flags */ 548a30f8f8cSSatish Balay r1 = baij->roworiented; 549a30f8f8cSSatish Balay r2 = a->roworiented; 55091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 551a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 552a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 554a30f8f8cSSatish Balay while (1) { 555a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 556a30f8f8cSSatish Balay if (!flg) break; 557a30f8f8cSSatish Balay 558a30f8f8cSSatish Balay for (i=0; i<n;) { 559a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 560a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 561a30f8f8cSSatish Balay if (j < n) ncols = j-i; 562a30f8f8cSSatish Balay else ncols = n-i; 563dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 564a30f8f8cSSatish Balay i = j; 565a30f8f8cSSatish Balay } 566a30f8f8cSSatish Balay } 567a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 568a30f8f8cSSatish Balay baij->roworiented = r1; 569a30f8f8cSSatish Balay a->roworiented = r2; 57091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay 576a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 577a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 578a30f8f8cSSatish Balay /* 579a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 580a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 581a30f8f8cSSatish Balay */ 582a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5837adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 584a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 585c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 589a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 591a30f8f8cSSatish Balay } 592cd6b891eSBarry Smith ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 595a30f8f8cSSatish Balay 59674ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 597a30f8f8cSSatish Balay baij->rowvalues = 0; 5985222a1afSHong Zhang 599a30f8f8cSSatish Balay PetscFunctionReturn(0); 600a30f8f8cSSatish Balay } 601a30f8f8cSSatish Balay 602dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6034a2ae208SSatish Balay #undef __FUNCT__ 6044a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6056849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 606a30f8f8cSSatish Balay { 607a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 608dfbe8321SBarry Smith PetscErrorCode ierr; 609d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6101302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 611ace3abfcSBarry Smith PetscBool iascii,isdraw; 612b0a32e0cSBarry Smith PetscViewer sviewer; 613f3ef73ceSBarry Smith PetscViewerFormat format; 614a30f8f8cSSatish Balay 615a30f8f8cSSatish Balay PetscFunctionBegin; 6162692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6172692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 61832077d6dSBarry Smith if (iascii) { 619b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 620456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 621a30f8f8cSSatish Balay MatInfo info; 6227adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 623a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6247b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6257b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 626a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 627e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 628a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 629e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 630b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6317b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 63207d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 633a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 634a30f8f8cSSatish Balay PetscFunctionReturn(0); 635fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63677431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 637a30f8f8cSSatish Balay PetscFunctionReturn(0); 638c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 639c1490034SHong Zhang PetscFunctionReturn(0); 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay } 642a30f8f8cSSatish Balay 643a30f8f8cSSatish Balay if (isdraw) { 644b0a32e0cSBarry Smith PetscDraw draw; 645ace3abfcSBarry Smith PetscBool isnull; 646b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 647b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 650a30f8f8cSSatish Balay if (size == 1) { 6517adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 652a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 653a30f8f8cSSatish Balay } else { 654a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 655a30f8f8cSSatish Balay Mat A; 65665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 658d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 659a30f8f8cSSatish Balay MatScalar *a; 660a30f8f8cSSatish Balay 661f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6627adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 663a30f8f8cSSatish Balay if (!rank) { 664f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 665a30f8f8cSSatish Balay } else { 666f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 667a30f8f8cSSatish Balay } 668f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 669d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 6702b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 67152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 672a30f8f8cSSatish Balay 673a30f8f8cSSatish Balay /* copy over the A part */ 67465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 675a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6761302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 679e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 680a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 681a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 682e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 683a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 684dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 685a30f8f8cSSatish Balay col++; a += bs; 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay /* copy over the B part */ 69065d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69165d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 692a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 693e9f7bc9eSHong Zhang 694e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 695a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 696a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 697a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 698a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 699799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 700a30f8f8cSSatish Balay col++; a += bs; 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 705a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 706a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 707a30f8f8cSSatish Balay /* 708a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 709b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 710a30f8f8cSSatish Balay */ 711b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71265d70643SHong Zhang if (!rank) { 7137adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7147566de4bSShri Abhyankar /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/ 7157566de4bSShri Abhyankar PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ); 716a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 717a30f8f8cSSatish Balay } 718b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7196bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 720a30f8f8cSSatish Balay } 721a30f8f8cSSatish Balay PetscFunctionReturn(0); 722a30f8f8cSSatish Balay } 723a30f8f8cSSatish Balay 7244a2ae208SSatish Balay #undef __FUNCT__ 7254a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 726dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 727a30f8f8cSSatish Balay { 728dfbe8321SBarry Smith PetscErrorCode ierr; 729ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 730a30f8f8cSSatish Balay 731a30f8f8cSSatish Balay PetscFunctionBegin; 7322692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 7332692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7342692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 7352692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73632077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 737a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 738a30f8f8cSSatish Balay } else { 739e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay PetscFunctionReturn(0); 742a30f8f8cSSatish Balay } 743a30f8f8cSSatish Balay 7444a2ae208SSatish Balay #undef __FUNCT__ 7454a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 746dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 747a30f8f8cSSatish Balay { 748a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 749dfbe8321SBarry Smith PetscErrorCode ierr; 750a30f8f8cSSatish Balay 751a30f8f8cSSatish Balay PetscFunctionBegin; 752a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 753d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 754a30f8f8cSSatish Balay #endif 755a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 756a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7576bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7586bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 759a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7606bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 761a30f8f8cSSatish Balay #else 76205b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 763a30f8f8cSSatish Balay #endif 76405b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7656bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7666bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7676bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7686bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7706bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7716bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7726bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7735755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7766bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7776bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7786bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 779ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 78005b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 781a30f8f8cSSatish Balay #endif 78259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 784899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 785bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 786901853e0SKris Buschelman 787dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 788901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 789901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 790901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 792aa5a9175SDahai Guo ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C","",PETSC_NULL);CHKERRQ(ierr); 793a30f8f8cSSatish Balay PetscFunctionReturn(0); 794a30f8f8cSSatish Balay } 795a30f8f8cSSatish Balay 7964a2ae208SSatish Balay #undef __FUNCT__ 797547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 798547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 799547795f9SHong Zhang { 800547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 801547795f9SHong Zhang PetscErrorCode ierr; 802547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 803547795f9SHong Zhang PetscScalar *x,*from; 804547795f9SHong Zhang 805547795f9SHong Zhang PetscFunctionBegin; 806547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 807e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 808547795f9SHong Zhang 809547795f9SHong Zhang /* diagonal part */ 810547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 811547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 812547795f9SHong Zhang 813547795f9SHong Zhang /* subdiagonal part */ 814547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 815547795f9SHong Zhang 816547795f9SHong Zhang /* copy x into the vec slvec0 */ 817547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 818547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 819547795f9SHong Zhang 820547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 821547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 823547795f9SHong Zhang 824547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 825547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 826547795f9SHong Zhang /* supperdiagonal part */ 827547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 828547795f9SHong Zhang PetscFunctionReturn(0); 829547795f9SHong Zhang } 830547795f9SHong Zhang 831547795f9SHong Zhang #undef __FUNCT__ 832a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 833dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 834a9d4b620SHong Zhang { 835a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 836dfbe8321SBarry Smith PetscErrorCode ierr; 837d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 838fa22f6d0SBarry Smith PetscScalar *x,*from; 839a9d4b620SHong Zhang 840a9d4b620SHong Zhang PetscFunctionBegin; 841a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 842e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 843a9d4b620SHong Zhang 844a9d4b620SHong Zhang /* diagonal part */ 845a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 846fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 847a9d4b620SHong Zhang 848a9d4b620SHong Zhang /* subdiagonal part */ 849a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 850fc165ae2SBarry Smith 851a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8521ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8531ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 854a9d4b620SHong Zhang 855fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 856fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8571ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 858fc165ae2SBarry Smith 859fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 860ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 861a9d4b620SHong Zhang /* supperdiagonal part */ 862a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 863a9d4b620SHong Zhang PetscFunctionReturn(0); 864a9d4b620SHong Zhang } 865a9d4b620SHong Zhang 866a9d4b620SHong Zhang #undef __FUNCT__ 86740781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 868dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 869a30f8f8cSSatish Balay { 870a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 871dfbe8321SBarry Smith PetscErrorCode ierr; 8721302d50aSBarry Smith PetscInt nt; 873a30f8f8cSSatish Balay 874a30f8f8cSSatish Balay PetscFunctionBegin; 875a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 876e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 877e7e72b3dSBarry Smith 878a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 879e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88065d70643SHong Zhang 881ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 882b941877fSHong Zhang /* do diagonal part */ 883b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 884b941877fSHong Zhang /* do supperdiagonal part */ 885ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 886b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 887b941877fSHong Zhang /* do subdiagonal part */ 888b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 889ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 890ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 89165d70643SHong Zhang 892a30f8f8cSSatish Balay PetscFunctionReturn(0); 893a30f8f8cSSatish Balay } 894a30f8f8cSSatish Balay 8954a2ae208SSatish Balay #undef __FUNCT__ 8964a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 897dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 898a30f8f8cSSatish Balay { 899de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 900dfbe8321SBarry Smith PetscErrorCode ierr; 901d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 902a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 903a9d4b620SHong Zhang 904a9d4b620SHong Zhang PetscFunctionBegin; 905a9d4b620SHong Zhang /* 9067adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9077adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 908a9d4b620SHong Zhang */ 909a9d4b620SHong Zhang /* diagonal part */ 910a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9112dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 912a9d4b620SHong Zhang 913a9d4b620SHong Zhang /* subdiagonal part */ 914a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 915a9d4b620SHong Zhang 916a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9171ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9181ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 919a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9201ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 921a9d4b620SHong Zhang 922ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9231ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 924ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 925a9d4b620SHong Zhang 926a9d4b620SHong Zhang /* supperdiagonal part */ 927a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 928a9d4b620SHong Zhang 929a9d4b620SHong Zhang PetscFunctionReturn(0); 930a9d4b620SHong Zhang } 931a9d4b620SHong Zhang 932a9d4b620SHong Zhang #undef __FUNCT__ 933a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 934dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 935a9d4b620SHong Zhang { 936a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 937dfbe8321SBarry Smith PetscErrorCode ierr; 938a30f8f8cSSatish Balay 939a30f8f8cSSatish Balay PetscFunctionBegin; 940ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 941b941877fSHong Zhang /* do diagonal part */ 942b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 943b941877fSHong Zhang /* do supperdiagonal part */ 944ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 945de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 946de8b6608SHong Zhang 947b941877fSHong Zhang /* do subdiagonal part */ 948a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 949ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 950ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 951aa482183SHong Zhang 952a30f8f8cSSatish Balay PetscFunctionReturn(0); 953a30f8f8cSSatish Balay } 954a30f8f8cSSatish Balay 955a30f8f8cSSatish Balay /* 956a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 957a30f8f8cSSatish Balay diagonal block 958a30f8f8cSSatish Balay */ 9594a2ae208SSatish Balay #undef __FUNCT__ 9604a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 961dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 962a30f8f8cSSatish Balay { 963a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 964dfbe8321SBarry Smith PetscErrorCode ierr; 965a30f8f8cSSatish Balay 966a30f8f8cSSatish Balay PetscFunctionBegin; 967e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 968a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 969a30f8f8cSSatish Balay PetscFunctionReturn(0); 970a30f8f8cSSatish Balay } 971a30f8f8cSSatish Balay 9724a2ae208SSatish Balay #undef __FUNCT__ 9734a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 974f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 975a30f8f8cSSatish Balay { 976a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 977dfbe8321SBarry Smith PetscErrorCode ierr; 978a30f8f8cSSatish Balay 979a30f8f8cSSatish Balay PetscFunctionBegin; 980f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 981f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 982a30f8f8cSSatish Balay PetscFunctionReturn(0); 983a30f8f8cSSatish Balay } 984a30f8f8cSSatish Balay 9854a2ae208SSatish Balay #undef __FUNCT__ 9864a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9871302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 988a30f8f8cSSatish Balay { 989d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 990d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 991d0d4cfc2SHong Zhang PetscErrorCode ierr; 992d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 993d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 994899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 995d0d4cfc2SHong Zhang 996a30f8f8cSSatish Balay PetscFunctionBegin; 997e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 998d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 999d0d4cfc2SHong Zhang 1000d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1001d0d4cfc2SHong Zhang /* 1002d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1003d0d4cfc2SHong Zhang */ 1004d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1005d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1006d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1007d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1008d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1009d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1010d0d4cfc2SHong Zhang } 101174ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1012d0d4cfc2SHong Zhang } 1013d0d4cfc2SHong Zhang 1014e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1015d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1016d0d4cfc2SHong Zhang 1017d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1018d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1019d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1020d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1021d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1022d0d4cfc2SHong Zhang nztot = nzA + nzB; 1023d0d4cfc2SHong Zhang 1024d0d4cfc2SHong Zhang cmap = mat->garray; 1025d0d4cfc2SHong Zhang if (v || idx) { 1026d0d4cfc2SHong Zhang if (nztot) { 1027d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1028d0d4cfc2SHong Zhang PetscInt imark = -1; 1029d0d4cfc2SHong Zhang if (v) { 1030d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1031d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1032d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1033d0d4cfc2SHong Zhang else break; 1034d0d4cfc2SHong Zhang } 1035d0d4cfc2SHong Zhang imark = i; 1036d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1037d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1038d0d4cfc2SHong Zhang } 1039d0d4cfc2SHong Zhang if (idx) { 1040d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1041d0d4cfc2SHong Zhang if (imark > -1) { 1042d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1043d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1044d0d4cfc2SHong Zhang } 1045d0d4cfc2SHong Zhang } else { 1046d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1047d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1048d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1049d0d4cfc2SHong Zhang else break; 1050d0d4cfc2SHong Zhang } 1051d0d4cfc2SHong Zhang imark = i; 1052d0d4cfc2SHong Zhang } 1053d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1054d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang } else { 1057d0d4cfc2SHong Zhang if (idx) *idx = 0; 1058d0d4cfc2SHong Zhang if (v) *v = 0; 1059d0d4cfc2SHong Zhang } 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang *nz = nztot; 1062d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1063d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1064a30f8f8cSSatish Balay PetscFunctionReturn(0); 1065a30f8f8cSSatish Balay } 1066a30f8f8cSSatish Balay 10674a2ae208SSatish Balay #undef __FUNCT__ 10684a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10691302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1070a30f8f8cSSatish Balay { 1071a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1072a30f8f8cSSatish Balay 1073a30f8f8cSSatish Balay PetscFunctionBegin; 1074e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1075a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1076a30f8f8cSSatish Balay PetscFunctionReturn(0); 1077a30f8f8cSSatish Balay } 1078a30f8f8cSSatish Balay 10794a2ae208SSatish Balay #undef __FUNCT__ 1080d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1081d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1082d0d4cfc2SHong Zhang { 1083d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1084d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1085d0d4cfc2SHong Zhang 1086d0d4cfc2SHong Zhang PetscFunctionBegin; 1087d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1088d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1089d0d4cfc2SHong Zhang } 1090d0d4cfc2SHong Zhang #undef __FUNCT__ 1091d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1092d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1093d0d4cfc2SHong Zhang { 1094d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1095d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1096d0d4cfc2SHong Zhang 1097d0d4cfc2SHong Zhang PetscFunctionBegin; 1098d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1099d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1100d0d4cfc2SHong Zhang } 1101d0d4cfc2SHong Zhang 1102d0d4cfc2SHong Zhang #undef __FUNCT__ 110399cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110499cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110599cafbc1SBarry Smith { 110699cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110799cafbc1SBarry Smith PetscErrorCode ierr; 110899cafbc1SBarry Smith 110999cafbc1SBarry Smith PetscFunctionBegin; 111099cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111199cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111299cafbc1SBarry Smith PetscFunctionReturn(0); 111399cafbc1SBarry Smith } 111499cafbc1SBarry Smith 111599cafbc1SBarry Smith #undef __FUNCT__ 111699cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111899cafbc1SBarry Smith { 111999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112099cafbc1SBarry Smith PetscErrorCode ierr; 112199cafbc1SBarry Smith 112299cafbc1SBarry Smith PetscFunctionBegin; 112399cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112499cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112599cafbc1SBarry Smith PetscFunctionReturn(0); 112699cafbc1SBarry Smith } 112799cafbc1SBarry Smith 112899cafbc1SBarry Smith #undef __FUNCT__ 11294a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1130dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1131a30f8f8cSSatish Balay { 1132a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1133dfbe8321SBarry Smith PetscErrorCode ierr; 1134a30f8f8cSSatish Balay 1135a30f8f8cSSatish Balay PetscFunctionBegin; 1136a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay PetscFunctionReturn(0); 1139a30f8f8cSSatish Balay } 1140a30f8f8cSSatish Balay 11414a2ae208SSatish Balay #undef __FUNCT__ 11424a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1143dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1144a30f8f8cSSatish Balay { 1145a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1146a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1147dfbe8321SBarry Smith PetscErrorCode ierr; 1148a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1149a30f8f8cSSatish Balay 1150a30f8f8cSSatish Balay PetscFunctionBegin; 1151d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1152a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1153a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1154a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1155a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1156a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1157a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1158a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1159a30f8f8cSSatish Balay info->nz_used = isend[0]; 1160a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1161a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1162a30f8f8cSSatish Balay info->memory = isend[3]; 1163a30f8f8cSSatish Balay info->mallocs = isend[4]; 1164a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1165d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1166a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1167a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1168a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1169a30f8f8cSSatish Balay info->memory = irecv[3]; 1170a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1171a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1172d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1173a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1174a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1175a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1176a30f8f8cSSatish Balay info->memory = irecv[3]; 1177a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1178a30f8f8cSSatish Balay } else { 1179e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1180a30f8f8cSSatish Balay } 1181a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1182a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1183a30f8f8cSSatish Balay info->factor_mallocs = 0; 1184a30f8f8cSSatish Balay PetscFunctionReturn(0); 1185a30f8f8cSSatish Balay } 1186a30f8f8cSSatish Balay 11874a2ae208SSatish Balay #undef __FUNCT__ 11884a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1189ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1190a30f8f8cSSatish Balay { 1191a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1192d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1193dfbe8321SBarry Smith PetscErrorCode ierr; 1194a30f8f8cSSatish Balay 1195a30f8f8cSSatish Balay PetscFunctionBegin; 1196e98b92d7SKris Buschelman switch (op) { 1197512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1198e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 119928b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1200a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1201e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12024e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12034e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1204e98b92d7SKris Buschelman break; 1205e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12064e0d8c25SBarry Smith a->roworiented = flg; 12074e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12084e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1209e98b92d7SKris Buschelman break; 12104e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1211290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1212e98b92d7SKris Buschelman break; 1213e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12144e0d8c25SBarry Smith a->donotstash = flg; 1215e98b92d7SKris Buschelman break; 1216e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12174e0d8c25SBarry Smith a->ht_flag = flg; 1218e98b92d7SKris Buschelman break; 12199a4540c5SBarry Smith case MAT_HERMITIAN: 1220e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1221eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1222547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1223eeffb40dSHong Zhang break; 1224ffa07934SHong Zhang case MAT_SPD: 1225ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1226ffa07934SHong Zhang A->spd = flg; 1227ffa07934SHong Zhang if (flg) { 1228ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1229ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1230ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1231ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1232ffa07934SHong Zhang } 1233ffa07934SHong Zhang break; 123477e54ba9SKris Buschelman case MAT_SYMMETRIC: 1235eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1236eeffb40dSHong Zhang break; 123777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1238eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1239eeffb40dSHong Zhang break; 12409a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1241e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1242290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124377e54ba9SKris Buschelman break; 1244d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12454e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1246d0d4cfc2SHong Zhang break; 1247d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12484e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1249d0d4cfc2SHong Zhang break; 1250d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12514e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1252d0d4cfc2SHong Zhang break; 1253e98b92d7SKris Buschelman default: 1254e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1255a30f8f8cSSatish Balay } 1256a30f8f8cSSatish Balay PetscFunctionReturn(0); 1257a30f8f8cSSatish Balay } 1258a30f8f8cSSatish Balay 12594a2ae208SSatish Balay #undef __FUNCT__ 12608115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1261fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1262a30f8f8cSSatish Balay { 1263dfbe8321SBarry Smith PetscErrorCode ierr; 1264a30f8f8cSSatish Balay PetscFunctionBegin; 1265815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1266999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1267fc4dec0aSBarry Smith } 12688115998fSBarry Smith PetscFunctionReturn(0); 1269a30f8f8cSSatish Balay } 1270a30f8f8cSSatish Balay 12714a2ae208SSatish Balay #undef __FUNCT__ 12724a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1273dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1274a30f8f8cSSatish Balay { 1275a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1276a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1277dfbe8321SBarry Smith PetscErrorCode ierr; 12785e90f9d9SHong Zhang PetscInt nv,m,n; 1279ace3abfcSBarry Smith PetscBool flg; 1280a30f8f8cSSatish Balay 1281a30f8f8cSSatish Balay PetscFunctionBegin; 1282a30f8f8cSSatish Balay if (ll != rr){ 1283b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1284e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1285a30f8f8cSSatish Balay } 1286b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1287b3bf805bSHong Zhang 12885e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1289e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1290b3bf805bSHong Zhang 12915e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1292e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12935e90f9d9SHong Zhang 1294ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12955e90f9d9SHong Zhang 12965e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1297a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12985e90f9d9SHong Zhang 12995e90f9d9SHong Zhang /* scale the diagonal part */ 1300a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1301a30f8f8cSSatish Balay 13025e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1303ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1304a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay PetscFunctionReturn(0); 1306a30f8f8cSSatish Balay } 1307a30f8f8cSSatish Balay 13084a2ae208SSatish Balay #undef __FUNCT__ 13094a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1310dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1311a30f8f8cSSatish Balay { 1312f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1313dfbe8321SBarry Smith PetscErrorCode ierr; 1314a30f8f8cSSatish Balay 1315a30f8f8cSSatish Balay PetscFunctionBegin; 1316a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1317a30f8f8cSSatish Balay PetscFunctionReturn(0); 1318a30f8f8cSSatish Balay } 1319a30f8f8cSSatish Balay 13206849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1321a30f8f8cSSatish Balay 13224a2ae208SSatish Balay #undef __FUNCT__ 13234a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1324ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1325a30f8f8cSSatish Balay { 1326a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1327a30f8f8cSSatish Balay Mat a,b,c,d; 1328ace3abfcSBarry Smith PetscBool flg; 1329dfbe8321SBarry Smith PetscErrorCode ierr; 1330a30f8f8cSSatish Balay 1331a30f8f8cSSatish Balay PetscFunctionBegin; 1332a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1333a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1334a30f8f8cSSatish Balay 1335a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1336abc0a331SBarry Smith if (flg) { 1337a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1338a30f8f8cSSatish Balay } 13397adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1340a30f8f8cSSatish Balay PetscFunctionReturn(0); 1341a30f8f8cSSatish Balay } 1342a30f8f8cSSatish Balay 13434a2ae208SSatish Balay #undef __FUNCT__ 13443c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13453c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13463c896bc6SHong Zhang { 13473c896bc6SHong Zhang PetscErrorCode ierr; 13483c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13493c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13503c896bc6SHong Zhang 13513c896bc6SHong Zhang PetscFunctionBegin; 13523c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13533c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1354d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13553c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1356d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13573c896bc6SHong Zhang } else { 13583c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13593c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13603c896bc6SHong Zhang } 13613c896bc6SHong Zhang PetscFunctionReturn(0); 13623c896bc6SHong Zhang } 13633c896bc6SHong Zhang 13643c896bc6SHong Zhang #undef __FUNCT__ 13654a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1366dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1367273d9f13SBarry Smith { 1368dfbe8321SBarry Smith PetscErrorCode ierr; 1369273d9f13SBarry Smith 1370273d9f13SBarry Smith PetscFunctionBegin; 1371db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1372273d9f13SBarry Smith PetscFunctionReturn(0); 1373273d9f13SBarry Smith } 1374a5e6ed63SBarry Smith 13754fe895cdSHong Zhang #undef __FUNCT__ 13764fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13774fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13784fe895cdSHong Zhang { 13794fe895cdSHong Zhang PetscErrorCode ierr; 13804fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13814fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13824fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13834fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13844fe895cdSHong Zhang 13854fe895cdSHong Zhang PetscFunctionBegin; 13864fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13874fe895cdSHong Zhang PetscScalar alpha = a; 13884fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13894fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13900805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13914fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13924fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13934fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13940805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13954fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13964fe895cdSHong Zhang } else { 1397d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13984fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1399d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14004fe895cdSHong Zhang } 14014fe895cdSHong Zhang PetscFunctionReturn(0); 14024fe895cdSHong Zhang } 14034fe895cdSHong Zhang 1404a5e6ed63SBarry Smith #undef __FUNCT__ 14056363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 14066363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 14076363de48SJed Brown { 14086363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14096363de48SJed Brown PetscInt rbs,cbs; 14106363de48SJed Brown PetscErrorCode ierr; 14116363de48SJed Brown 14126363de48SJed Brown PetscFunctionBegin; 14136363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14146363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14156363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14166363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1417e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 1418e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14196363de48SJed Brown PetscFunctionReturn(0); 14206363de48SJed Brown } 14216363de48SJed Brown 14226363de48SJed Brown #undef __FUNCT__ 1423a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14241302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1425a5e6ed63SBarry Smith { 14266849ba73SBarry Smith PetscErrorCode ierr; 14271302d50aSBarry Smith PetscInt i; 1428ace3abfcSBarry Smith PetscBool flg; 1429a5e6ed63SBarry Smith 14306849ba73SBarry Smith PetscFunctionBegin; 1431a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1432a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1433e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1434a5e6ed63SBarry Smith } 1435a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1436a5e6ed63SBarry Smith PetscFunctionReturn(0); 1437a5e6ed63SBarry Smith } 1438a5e6ed63SBarry Smith 1439a5e6ed63SBarry Smith 1440a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1441a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1442a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1443a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1444a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1445a9d4b620SHong Zhang MatMult_MPISBAIJ, 144697304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1447431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1448431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1449a30f8f8cSSatish Balay 0, 1450a30f8f8cSSatish Balay 0, 1451a30f8f8cSSatish Balay 0, 145297304618SKris Buschelman /*10*/ 0, 1453a30f8f8cSSatish Balay 0, 1454a30f8f8cSSatish Balay 0, 145541f059aeSBarry Smith MatSOR_MPISBAIJ, 1456a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 145797304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1458a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1459a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1460a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1461a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 146297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1463a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1464a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1465a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1466d519adbfSMatthew Knepley /*24*/ 0, 1467a30f8f8cSSatish Balay 0, 1468a30f8f8cSSatish Balay 0, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1472b5df2d14SHong Zhang 0, 1473a30f8f8cSSatish Balay 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1482a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1483d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1484a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14853c896bc6SHong Zhang MatCopy_MPISBAIJ, 1486d519adbfSMatthew Knepley /*44*/ 0, 1487a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1488a30f8f8cSSatish Balay 0, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 14916363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1492a30f8f8cSSatish Balay 0, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 1496d519adbfSMatthew Knepley /*54*/ 0, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1501d519adbfSMatthew Knepley /*59*/ 0, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay 0, 1504357abbc8SBarry Smith 0, 150524d5174aSHong Zhang 0, 1506d519adbfSMatthew Knepley /*64*/ 0, 150724d5174aSHong Zhang 0, 150824d5174aSHong Zhang 0, 150924d5174aSHong Zhang 0, 151024d5174aSHong Zhang 0, 1511d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 151224d5174aSHong Zhang 0, 151397304618SKris Buschelman 0, 151497304618SKris Buschelman 0, 151597304618SKris Buschelman 0, 1516d519adbfSMatthew Knepley /*74*/ 0, 151797304618SKris Buschelman 0, 151897304618SKris Buschelman 0, 151997304618SKris Buschelman 0, 152097304618SKris Buschelman 0, 1521d519adbfSMatthew Knepley /*79*/ 0, 152297304618SKris Buschelman 0, 152397304618SKris Buschelman 0, 152497304618SKris Buschelman 0, 15255bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1526d519adbfSMatthew Knepley /*84*/ 0, 1527865e5f61SKris Buschelman 0, 1528865e5f61SKris Buschelman 0, 1529865e5f61SKris Buschelman 0, 1530865e5f61SKris Buschelman 0, 1531d519adbfSMatthew Knepley /*89*/ 0, 1532865e5f61SKris Buschelman 0, 1533865e5f61SKris Buschelman 0, 1534865e5f61SKris Buschelman 0, 1535865e5f61SKris Buschelman 0, 1536d519adbfSMatthew Knepley /*94*/ 0, 1537865e5f61SKris Buschelman 0, 1538865e5f61SKris Buschelman 0, 153999cafbc1SBarry Smith 0, 154099cafbc1SBarry Smith 0, 1541d519adbfSMatthew Knepley /*99*/ 0, 154299cafbc1SBarry Smith 0, 154399cafbc1SBarry Smith 0, 154499cafbc1SBarry Smith 0, 154599cafbc1SBarry Smith 0, 1546d519adbfSMatthew Knepley /*104*/0, 154799cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1548d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1549d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 155095936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 155195936485SShri Abhyankar /*109*/0, 155295936485SShri Abhyankar 0, 155395936485SShri Abhyankar 0, 155495936485SShri Abhyankar 0, 155595936485SShri Abhyankar 0, 155695936485SShri Abhyankar /*114*/0, 155795936485SShri Abhyankar 0, 155895936485SShri Abhyankar 0, 155995936485SShri Abhyankar 0, 156095936485SShri Abhyankar 0, 156195936485SShri Abhyankar /*119*/0, 156295936485SShri Abhyankar 0, 156395936485SShri Abhyankar 0, 15645bba2384SShri Abhyankar 0 156599cafbc1SBarry Smith }; 1566a30f8f8cSSatish Balay 1567a30f8f8cSSatish Balay 1568a30f8f8cSSatish Balay EXTERN_C_BEGIN 15694a2ae208SSatish Balay #undef __FUNCT__ 15704a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 157111bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1572a30f8f8cSSatish Balay { 1573a30f8f8cSSatish Balay PetscFunctionBegin; 1574a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1575a30f8f8cSSatish Balay PetscFunctionReturn(0); 1576a30f8f8cSSatish Balay } 1577a30f8f8cSSatish Balay EXTERN_C_END 1578a30f8f8cSSatish Balay 1579273d9f13SBarry Smith EXTERN_C_BEGIN 15804a2ae208SSatish Balay #undef __FUNCT__ 1581a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 15827087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1583a23d5eceSKris Buschelman { 1584a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1585dfbe8321SBarry Smith PetscErrorCode ierr; 1586db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1587a23d5eceSKris Buschelman 1588a23d5eceSKris Buschelman PetscFunctionBegin; 1589db4efbfdSBarry Smith if (bs < 0){ 15907adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1591db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15928c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1593db4efbfdSBarry Smith bs = PetscAbs(bs); 1594db4efbfdSBarry Smith } 1595e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1596db4efbfdSBarry Smith bs = newbs; 1597a23d5eceSKris Buschelman 1598a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1599a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1600e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1601e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1602899cda47SBarry Smith 1603d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 160426283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 160526283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1606899cda47SBarry Smith 1607a23d5eceSKris Buschelman if (d_nnz) { 1608d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1609e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1610a23d5eceSKris Buschelman } 1611a23d5eceSKris Buschelman } 1612a23d5eceSKris Buschelman if (o_nnz) { 1613d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1614e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1615a23d5eceSKris Buschelman } 1616a23d5eceSKris Buschelman } 1617a23d5eceSKris Buschelman 1618a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1619d0f46423SBarry Smith mbs = B->rmap->n/bs; 1620d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1621c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1622a23d5eceSKris Buschelman 1623d0f46423SBarry Smith B->rmap->bs = bs; 1624a23d5eceSKris Buschelman b->bs2 = bs*bs; 1625a23d5eceSKris Buschelman b->mbs = mbs; 1626a23d5eceSKris Buschelman b->nbs = mbs; 1627a23d5eceSKris Buschelman b->Mbs = Mbs; 1628a23d5eceSKris Buschelman b->Nbs = Mbs; 1629a23d5eceSKris Buschelman 1630a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1631d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1632a23d5eceSKris Buschelman } 1633d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1634d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1635a23d5eceSKris Buschelman 1636d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1637d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1638a23d5eceSKris Buschelman 1639526dfc15SBarry Smith if (!B->preallocated) { 1640f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1641d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16429c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 164352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1644f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1645d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16464aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 164752e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 164815bb146dSJed Brown ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1649526dfc15SBarry Smith } 1650a23d5eceSKris Buschelman 1651526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1652526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1653526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 16547827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1655a23d5eceSKris Buschelman PetscFunctionReturn(0); 1656a23d5eceSKris Buschelman } 1657a23d5eceSKris Buschelman EXTERN_C_END 1658a23d5eceSKris Buschelman 16595c9eb25fSBarry Smith EXTERN_C_BEGIN 1660dfb205c3SBarry Smith #undef __FUNCT__ 1661dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1662dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1663dfb205c3SBarry Smith { 1664dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1665dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1666dfb205c3SBarry Smith const PetscInt *JJ=0; 1667dfb205c3SBarry Smith PetscScalar *values=0; 1668dfb205c3SBarry Smith PetscErrorCode ierr; 1669dfb205c3SBarry Smith 1670dfb205c3SBarry Smith PetscFunctionBegin; 1671dfb205c3SBarry Smith 1672dfb205c3SBarry Smith if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1673dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1674dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1675dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1676dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1677dfb205c3SBarry Smith m = B->rmap->n/bs; 1678dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1679dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1680dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1681dfb205c3SBarry Smith 1682dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1683dfb205c3SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 1684dfb205c3SBarry Smith for (i=0; i<m; i++) { 1685dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1686dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1687dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1688dfb205c3SBarry Smith JJ = jj + ii[i]; 1689dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1690dfb205c3SBarry Smith if (*JJ >= cstart) break; 1691dfb205c3SBarry Smith JJ++; 1692dfb205c3SBarry Smith } 1693dfb205c3SBarry Smith d = 0; 1694dfb205c3SBarry Smith for (; j<nz; j++) { 1695dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1696dfb205c3SBarry Smith d++; 1697dfb205c3SBarry Smith } 1698dfb205c3SBarry Smith d_nnz[i] = d; 1699dfb205c3SBarry Smith o_nnz[i] = nz - d; 1700dfb205c3SBarry Smith } 1701dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1702dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1703dfb205c3SBarry Smith 1704dfb205c3SBarry Smith values = (PetscScalar*)V; 1705dfb205c3SBarry Smith if (!values) { 1706dfb205c3SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 1707dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1708dfb205c3SBarry Smith } 1709dfb205c3SBarry Smith for (i=0; i<m; i++) { 1710dfb205c3SBarry Smith PetscInt row = i + rstart; 1711dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1712dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1713dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1714dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1715dfb205c3SBarry Smith } 1716dfb205c3SBarry Smith 1717dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1718dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1719dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17207827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1721dfb205c3SBarry Smith PetscFunctionReturn(0); 1722dfb205c3SBarry Smith } 1723dfb205c3SBarry Smith EXTERN_C_END 1724dfb205c3SBarry Smith 1725dfb205c3SBarry Smith EXTERN_C_BEGIN 1726611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 17277087cfbeSBarry Smith extern PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1728611f576cSBarry Smith #endif 1729611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 17307087cfbeSBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1731611f576cSBarry Smith #endif 1732b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1733b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1734b5e56a35SBarry Smith #endif 17355c9eb25fSBarry Smith EXTERN_C_END 17365c9eb25fSBarry Smith 17370bad9183SKris Buschelman /*MC 1738fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1739828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1740828413b8SBarry Smith the matrix is stored. 1741828413b8SBarry Smith 1742828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1743828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17440bad9183SKris Buschelman 17450bad9183SKris Buschelman Options Database Keys: 17460bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17470bad9183SKris Buschelman 17480bad9183SKris Buschelman Level: beginner 17490bad9183SKris Buschelman 17500bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17510bad9183SKris Buschelman M*/ 17520bad9183SKris Buschelman 1753a23d5eceSKris Buschelman EXTERN_C_BEGIN 1754aa5a9175SDahai Guo extern PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,const MatType,MatReuse,Mat*); 1755aa5a9175SDahai Guo EXTERN_C_END 1756aa5a9175SDahai Guo 1757aa5a9175SDahai Guo EXTERN_C_BEGIN 1758a23d5eceSKris Buschelman #undef __FUNCT__ 17594a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17607087cfbeSBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1761b5df2d14SHong Zhang { 1762b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1763dfbe8321SBarry Smith PetscErrorCode ierr; 1764ace3abfcSBarry Smith PetscBool flg; 1765b5df2d14SHong Zhang 1766b5df2d14SHong Zhang PetscFunctionBegin; 1767b5df2d14SHong Zhang 176838f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1769b0a32e0cSBarry Smith B->data = (void*)b; 1770b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1771b5df2d14SHong Zhang 1772b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1773b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1774b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1775b5df2d14SHong Zhang 1776b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 17777adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 17787adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1779b5df2d14SHong Zhang 1780b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1781899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1782b5df2d14SHong Zhang 1783b5df2d14SHong Zhang /* build cache for off array entries formed */ 17847adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1785b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1786b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1787b5df2d14SHong Zhang b->garray = PETSC_NULL; 1788b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1789b5df2d14SHong Zhang 1790b5df2d14SHong Zhang /* stuff used in block assembly */ 1791b5df2d14SHong Zhang b->barray = 0; 1792b5df2d14SHong Zhang 1793b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1794b5df2d14SHong Zhang b->lvec = 0; 1795b5df2d14SHong Zhang b->Mvctx = 0; 179640781036SHong Zhang b->slvec0 = 0; 179740781036SHong Zhang b->slvec0b = 0; 179840781036SHong Zhang b->slvec1 = 0; 179940781036SHong Zhang b->slvec1a = 0; 180040781036SHong Zhang b->slvec1b = 0; 180140781036SHong Zhang b->sMvctx = 0; 1802b5df2d14SHong Zhang 1803b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1804b5df2d14SHong Zhang b->rowindices = 0; 1805b5df2d14SHong Zhang b->rowvalues = 0; 1806b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1807b5df2d14SHong Zhang 1808b5df2d14SHong Zhang /* hash table stuff */ 1809b5df2d14SHong Zhang b->ht = 0; 1810b5df2d14SHong Zhang b->hd = 0; 1811b5df2d14SHong Zhang b->ht_size = 0; 1812b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1813b5df2d14SHong Zhang b->ht_fact = 0; 1814b5df2d14SHong Zhang b->ht_total_ct = 0; 1815b5df2d14SHong Zhang b->ht_insert_ct = 0; 1816b5df2d14SHong Zhang 18177a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 18187a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 18197a868f3eSHong Zhang 182059ffdab8SBarry Smith b->in_loc = 0; 182159ffdab8SBarry Smith b->v_loc = 0; 182259ffdab8SBarry Smith b->n_loc = 0; 18237adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 1824acfcf0e5SJed Brown ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1825b5df2d14SHong Zhang if (flg) { 1826f6275e2eSBarry Smith PetscReal fact = 1.39; 18274e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 18288c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1829b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1830b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 18311e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1832b5df2d14SHong Zhang } 18338c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 18348c07d4e3SBarry Smith 1835b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1836ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1837b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1838b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1839b5e56a35SBarry Smith #endif 1840611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1841ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 1842bccb9932SShri Abhyankar "MatGetFactor_sbaij_mumps", 1843bccb9932SShri Abhyankar MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1844611f576cSBarry Smith #endif 1845611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1846ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 18475c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 18485c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1849611f576cSBarry Smith #endif 1850b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1851b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1852b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1853b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1854b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1855b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1856b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1857b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1858b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1859a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1860a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1861a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1862dfb205c3SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C", 1863dfb205c3SBarry Smith "MatMPISBAIJSetPreallocationCSR_MPISBAIJ", 1864dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1865aa5a9175SDahai Guo ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C", 1866aa5a9175SDahai Guo "MatConvert_MPISBAIJ_MPISBSTRM", 1867aa5a9175SDahai Guo MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1868aa5a9175SDahai Guo 186923ce1328SBarry Smith B->symmetric = PETSC_TRUE; 187023ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 187123ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 187223ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 187317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1874b5df2d14SHong Zhang PetscFunctionReturn(0); 1875b5df2d14SHong Zhang } 1876273d9f13SBarry Smith EXTERN_C_END 1877b5df2d14SHong Zhang 1878209238afSKris Buschelman /*MC 1879002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1880209238afSKris Buschelman 1881209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1882209238afSKris Buschelman and MATMPISBAIJ otherwise. 1883209238afSKris Buschelman 1884209238afSKris Buschelman Options Database Keys: 1885209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1886209238afSKris Buschelman 1887209238afSKris Buschelman Level: beginner 1888209238afSKris Buschelman 1889209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1890209238afSKris Buschelman M*/ 1891209238afSKris Buschelman 18924a2ae208SSatish Balay #undef __FUNCT__ 18934a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1894b5df2d14SHong Zhang /*@C 1895b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1896b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1897b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1898b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1899b5df2d14SHong Zhang 1900b5df2d14SHong Zhang Collective on Mat 1901b5df2d14SHong Zhang 1902b5df2d14SHong Zhang Input Parameters: 1903b5df2d14SHong Zhang + A - the matrix 1904b5df2d14SHong Zhang . bs - size of blockk 1905b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1906b5df2d14SHong Zhang submatrix (same for all local rows) 1907b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 19086d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 19096d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 19106d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1911b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1912b5df2d14SHong Zhang submatrix (same for all local rows). 1913b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1914c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 1915c2fc9fa9SBarry Smith (possibly different for each block row) or PETSC_NULL. 1916b5df2d14SHong Zhang 1917b5df2d14SHong Zhang 1918b5df2d14SHong Zhang Options Database Keys: 1919b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1920b5df2d14SHong Zhang block calculations (much slower) 1921b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1922b5df2d14SHong Zhang 1923b5df2d14SHong Zhang Notes: 1924b5df2d14SHong Zhang 1925b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1926b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1927b5df2d14SHong Zhang 192849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 192949a6f317SBarry Smith 1930b5df2d14SHong Zhang Storage Information: 1931b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1932b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1933b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1934b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1935b5df2d14SHong Zhang 1936b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1937b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1938b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1939b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1940b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1941b5df2d14SHong Zhang 1942aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1943aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1944aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1945aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1946aa95bbe8SBarry Smith 1947b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1948b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1949b5df2d14SHong Zhang 1950b5df2d14SHong Zhang .vb 1951b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1952b5df2d14SHong Zhang ------------------- 1953c2fc9fa9SBarry Smith row 3 | . . . d d d o o o o o o 1954c2fc9fa9SBarry Smith row 4 | . . . d d d o o o o o o 1955c2fc9fa9SBarry Smith row 5 | . . . d d d o o o o o o 1956b5df2d14SHong Zhang ------------------- 1957b5df2d14SHong Zhang .ve 1958b5df2d14SHong Zhang 1959b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1960b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19616d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19626d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1963b5df2d14SHong Zhang 19646d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19656d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1966c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1967c2fc9fa9SBarry Smith 1968b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1969b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1970b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1971b5df2d14SHong Zhang matrices. 1972b5df2d14SHong Zhang 1973b5df2d14SHong Zhang Level: intermediate 1974b5df2d14SHong Zhang 1975b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1976b5df2d14SHong Zhang 1977b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1978b5df2d14SHong Zhang @*/ 19797087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1980b5df2d14SHong Zhang { 19814ac538c5SBarry Smith PetscErrorCode ierr; 1982b5df2d14SHong Zhang 1983b5df2d14SHong Zhang PetscFunctionBegin; 1984*6ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 1985*6ba663aaSJed Brown PetscValidType(B,1); 1986*6ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19874ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1988b5df2d14SHong Zhang PetscFunctionReturn(0); 1989b5df2d14SHong Zhang } 1990b5df2d14SHong Zhang 19914a2ae208SSatish Balay #undef __FUNCT__ 19924a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1993a30f8f8cSSatish Balay /*@C 1994a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1995a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1996a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1997a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1998a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1999a30f8f8cSSatish Balay 2000a30f8f8cSSatish Balay Collective on MPI_Comm 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay Input Parameters: 2003a30f8f8cSSatish Balay + comm - MPI communicator 2004a30f8f8cSSatish Balay . bs - size of blockk 2005a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2006a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2007a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2008a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2009a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2010a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2011a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2012a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2013a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2014a30f8f8cSSatish Balay submatrix (same for all local rows) 2015a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 20166d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 20176d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 20186d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 2019a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2020a30f8f8cSSatish Balay submatrix (same for all local rows). 2021a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2022a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 2023a30f8f8cSSatish Balay each block row) or PETSC_NULL. 2024a30f8f8cSSatish Balay 2025a30f8f8cSSatish Balay Output Parameter: 2026a30f8f8cSSatish Balay . A - the matrix 2027a30f8f8cSSatish Balay 2028a30f8f8cSSatish Balay Options Database Keys: 2029a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2030a30f8f8cSSatish Balay block calculations (much slower) 2031a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2032a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2033a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2034a30f8f8cSSatish Balay 2035175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2036ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2037175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2038175b88e8SBarry Smith 2039a30f8f8cSSatish Balay Notes: 2040d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20416d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2042d1be2dadSMatthew Knepley 2043a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2044a30f8f8cSSatish Balay (possibly both). 2045a30f8f8cSSatish Balay 2046a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2047a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2048a30f8f8cSSatish Balay 204949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 205049a6f317SBarry Smith 2051a30f8f8cSSatish Balay Storage Information: 2052a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2053a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2054a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2055a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2056a30f8f8cSSatish Balay 2057a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2058a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 2059a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2060a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2061a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2062a30f8f8cSSatish Balay 2063a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2064a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2065a30f8f8cSSatish Balay 2066a30f8f8cSSatish Balay .vb 2067a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2068a30f8f8cSSatish Balay ------------------- 2069c2fc9fa9SBarry Smith row 3 | . . . d d d o o o o o o 2070c2fc9fa9SBarry Smith row 4 | . . . d d d o o o o o o 2071c2fc9fa9SBarry Smith row 5 | . . . d d d o o o o o o 2072a30f8f8cSSatish Balay ------------------- 2073a30f8f8cSSatish Balay .ve 2074a30f8f8cSSatish Balay 2075a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2076a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20776d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20786d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2079a30f8f8cSSatish Balay 20806d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20816d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2082a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2083a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2084a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2085a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2086a30f8f8cSSatish Balay matrices. 2087a30f8f8cSSatish Balay 2088a30f8f8cSSatish Balay Level: intermediate 2089a30f8f8cSSatish Balay 2090a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2091a30f8f8cSSatish Balay 2092a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2093a30f8f8cSSatish Balay @*/ 2094a30f8f8cSSatish Balay 20957087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2096a30f8f8cSSatish Balay { 20976849ba73SBarry Smith PetscErrorCode ierr; 20981302d50aSBarry Smith PetscMPIInt size; 2099a30f8f8cSSatish Balay 2100a30f8f8cSSatish Balay PetscFunctionBegin; 2101f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2102f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2103273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2104273d9f13SBarry Smith if (size > 1) { 2105b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2106b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2107273d9f13SBarry Smith } else { 2108273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2109273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2110273d9f13SBarry Smith } 2111a30f8f8cSSatish Balay PetscFunctionReturn(0); 2112a30f8f8cSSatish Balay } 2113a30f8f8cSSatish Balay 2114a30f8f8cSSatish Balay 21154a2ae208SSatish Balay #undef __FUNCT__ 21164a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 21176849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2118a30f8f8cSSatish Balay { 2119a30f8f8cSSatish Balay Mat mat; 2120a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2121dfbe8321SBarry Smith PetscErrorCode ierr; 2122d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2123387bc808SHong Zhang PetscScalar *array; 2124a30f8f8cSSatish Balay 2125a30f8f8cSSatish Balay PetscFunctionBegin; 2126a30f8f8cSSatish Balay *newmat = 0; 21277adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2128d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 21297adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 21301d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 21311e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 21321e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2133e1b6402fSHong Zhang 2134d5f3da31SBarry Smith mat->factortype = matin->factortype; 2135273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 213682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21377fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21387fff6886SHong Zhang 2139b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2140a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2141a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2142a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2143a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2144a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2145a30f8f8cSSatish Balay 2146899cda47SBarry Smith 2147a30f8f8cSSatish Balay a->size = oldmat->size; 2148a30f8f8cSSatish Balay a->rank = oldmat->rank; 2149a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2150a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2151a30f8f8cSSatish Balay a->rowindices = 0; 2152a30f8f8cSSatish Balay a->rowvalues = 0; 2153a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2154a30f8f8cSSatish Balay a->barray = 0; 2155899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2156899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2157899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2158899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2159a30f8f8cSSatish Balay 2160a30f8f8cSSatish Balay /* hash table stuff */ 2161a30f8f8cSSatish Balay a->ht = 0; 2162a30f8f8cSSatish Balay a->hd = 0; 2163a30f8f8cSSatish Balay a->ht_size = 0; 2164a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2165a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2166a30f8f8cSSatish Balay a->ht_total_ct = 0; 2167a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2168a30f8f8cSSatish Balay 2169899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2170a30f8f8cSSatish Balay if (oldmat->colmap) { 2171a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2172a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2173a30f8f8cSSatish Balay #else 21741302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 217552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21761302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2177a30f8f8cSSatish Balay #endif 2178a30f8f8cSSatish Balay } else a->colmap = 0; 2179387bc808SHong Zhang 2180a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21811302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 218252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21831302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2184a30f8f8cSSatish Balay } else a->garray = 0; 2185a30f8f8cSSatish Balay 2186533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2187a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 218852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2189a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 219052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 219182327fa8SHong Zhang 219282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 219352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 219482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 219552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2196387bc808SHong Zhang 2197387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21981ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2199387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2200387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 22011ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 22021ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2203387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 22041ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 220552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 220652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 220752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 220852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 220952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2210387bc808SHong Zhang 2211387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2212387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2213387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 221452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 221582327fa8SHong Zhang 2216a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 221752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2218a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 221952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 22207adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2221a30f8f8cSSatish Balay *newmat = mat; 2222a30f8f8cSSatish Balay PetscFunctionReturn(0); 2223a30f8f8cSSatish Balay } 2224a30f8f8cSSatish Balay 22254a2ae208SSatish Balay #undef __FUNCT__ 22265bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2227112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 222895936485SShri Abhyankar { 222995936485SShri Abhyankar PetscErrorCode ierr; 223095936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 223195936485SShri Abhyankar PetscScalar *vals,*buf; 223295936485SShri Abhyankar MPI_Comm comm = ((PetscObject)viewer)->comm; 223395936485SShri Abhyankar MPI_Status status; 223495936485SShri Abhyankar PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 223595936485SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 223695936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 223795936485SShri Abhyankar PetscInt bs=1,Mbs,mbs,extra_rows; 223895936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 223995936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 224095936485SShri Abhyankar int fd; 224195936485SShri Abhyankar 224295936485SShri Abhyankar PetscFunctionBegin; 224395936485SShri Abhyankar ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 224495936485SShri Abhyankar ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 224595936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 224695936485SShri Abhyankar 224795936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 224895936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 224995936485SShri Abhyankar if (!rank) { 225095936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 225195936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 225295936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 225395936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 225495936485SShri Abhyankar } 225595936485SShri Abhyankar 225695936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 225795936485SShri Abhyankar 225895936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 225995936485SShri Abhyankar M = header[1]; N = header[2]; 226095936485SShri Abhyankar 226195936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 226295936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 226395936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 226495936485SShri Abhyankar 226595936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 226695936485SShri Abhyankar if (sizesset) { 226795936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 226895936485SShri Abhyankar } 2269abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2270abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 227195936485SShri Abhyankar 227295936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 227395936485SShri Abhyankar 227495936485SShri Abhyankar /* 227595936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 227695936485SShri Abhyankar divisible by the blocksize 227795936485SShri Abhyankar */ 227895936485SShri Abhyankar Mbs = M/bs; 227995936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 228095936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 228195936485SShri Abhyankar else Mbs++; 228295936485SShri Abhyankar if (extra_rows &&!rank) { 228395936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 228495936485SShri Abhyankar } 228595936485SShri Abhyankar 228695936485SShri Abhyankar /* determine ownership of all rows */ 228795936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 228895936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 228995936485SShri Abhyankar m = mbs*bs; 229095936485SShri Abhyankar } else { /* User Set */ 229195936485SShri Abhyankar m = newmat->rmap->n; 229295936485SShri Abhyankar mbs = m/bs; 229395936485SShri Abhyankar } 229495936485SShri Abhyankar ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 229595936485SShri Abhyankar mmbs = PetscMPIIntCast(mbs); 229695936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 229795936485SShri Abhyankar rowners[0] = 0; 229895936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 229995936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 230095936485SShri Abhyankar rstart = rowners[rank]; 230195936485SShri Abhyankar rend = rowners[rank+1]; 230295936485SShri Abhyankar 230395936485SShri Abhyankar /* distribute row lengths to all processors */ 230495936485SShri Abhyankar ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 230595936485SShri Abhyankar if (!rank) { 230695936485SShri Abhyankar ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 230795936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 230895936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 230995936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 231095936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 231195936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 231295936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 231395936485SShri Abhyankar } else { 231495936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 231595936485SShri Abhyankar } 231695936485SShri Abhyankar 231795936485SShri Abhyankar if (!rank) { /* procs[0] */ 231895936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 231995936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 232095936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 232195936485SShri Abhyankar for (i=0; i<size; i++) { 232295936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 232395936485SShri Abhyankar procsnz[i] += rowlengths[j]; 232495936485SShri Abhyankar } 232595936485SShri Abhyankar } 232695936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 232795936485SShri Abhyankar 232895936485SShri Abhyankar /* determine max buffer needed and allocate it */ 232995936485SShri Abhyankar maxnz = 0; 233095936485SShri Abhyankar for (i=0; i<size; i++) { 233195936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 233295936485SShri Abhyankar } 233395936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 233495936485SShri Abhyankar 233595936485SShri Abhyankar /* read in my part of the matrix column indices */ 233695936485SShri Abhyankar nz = procsnz[0]; 233795936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 233895936485SShri Abhyankar mycols = ibuf; 233995936485SShri Abhyankar if (size == 1) nz -= extra_rows; 234095936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 234195936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 234295936485SShri Abhyankar 234395936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 234495936485SShri Abhyankar for (i=1; i<size-1; i++) { 234595936485SShri Abhyankar nz = procsnz[i]; 234695936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 234795936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 234895936485SShri Abhyankar } 234995936485SShri Abhyankar /* read in the stuff for the last proc */ 235095936485SShri Abhyankar if (size != 1) { 235195936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 235295936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 235395936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 235495936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 235595936485SShri Abhyankar } 235695936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 235795936485SShri Abhyankar } else { /* procs[i], i>0 */ 235895936485SShri Abhyankar /* determine buffer space needed for message */ 235995936485SShri Abhyankar nz = 0; 236095936485SShri Abhyankar for (i=0; i<m; i++) { 236195936485SShri Abhyankar nz += locrowlens[i]; 236295936485SShri Abhyankar } 236395936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 236495936485SShri Abhyankar mycols = ibuf; 236595936485SShri Abhyankar /* receive message of column indices*/ 236695936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 236795936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 236895936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 236995936485SShri Abhyankar } 237095936485SShri Abhyankar 237195936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 237295936485SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 237395936485SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 237495936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 237595936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 237695936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 237795936485SShri Abhyankar rowcount = 0; 237895936485SShri Abhyankar nzcount = 0; 237995936485SShri Abhyankar for (i=0; i<mbs; i++) { 238095936485SShri Abhyankar dcount = 0; 238195936485SShri Abhyankar odcount = 0; 238295936485SShri Abhyankar for (j=0; j<bs; j++) { 238395936485SShri Abhyankar kmax = locrowlens[rowcount]; 238495936485SShri Abhyankar for (k=0; k<kmax; k++) { 238595936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 238695936485SShri Abhyankar if (!mask[tmp]) { 238795936485SShri Abhyankar mask[tmp] = 1; 238895936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 238995936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 239095936485SShri Abhyankar } 239195936485SShri Abhyankar } 239295936485SShri Abhyankar rowcount++; 239395936485SShri Abhyankar } 239495936485SShri Abhyankar 239595936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 239695936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 239795936485SShri Abhyankar 239895936485SShri Abhyankar /* zero out the mask elements we set */ 239995936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 240095936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 240195936485SShri Abhyankar } 240295936485SShri Abhyankar if (!sizesset) { 240395936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 240495936485SShri Abhyankar } 240595936485SShri Abhyankar ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 240695936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 240795936485SShri Abhyankar 240895936485SShri Abhyankar if (!rank) { 240995936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 241095936485SShri Abhyankar /* read in my part of the matrix numerical values */ 241195936485SShri Abhyankar nz = procsnz[0]; 241295936485SShri Abhyankar vals = buf; 241395936485SShri Abhyankar mycols = ibuf; 241495936485SShri Abhyankar if (size == 1) nz -= extra_rows; 241595936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 241695936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 241795936485SShri Abhyankar 241895936485SShri Abhyankar /* insert into matrix */ 241995936485SShri Abhyankar jj = rstart*bs; 242095936485SShri Abhyankar for (i=0; i<m; i++) { 242195936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 242295936485SShri Abhyankar mycols += locrowlens[i]; 242395936485SShri Abhyankar vals += locrowlens[i]; 242495936485SShri Abhyankar jj++; 242595936485SShri Abhyankar } 242695936485SShri Abhyankar 242795936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 242895936485SShri Abhyankar for (i=1; i<size-1; i++) { 242995936485SShri Abhyankar nz = procsnz[i]; 243095936485SShri Abhyankar vals = buf; 243195936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 243295936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 243395936485SShri Abhyankar } 243495936485SShri Abhyankar /* the last proc */ 243595936485SShri Abhyankar if (size != 1){ 243695936485SShri Abhyankar nz = procsnz[i] - extra_rows; 243795936485SShri Abhyankar vals = buf; 243895936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 243995936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 244095936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 244195936485SShri Abhyankar } 244295936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 244395936485SShri Abhyankar 244495936485SShri Abhyankar } else { 244595936485SShri Abhyankar /* receive numeric values */ 244695936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 244795936485SShri Abhyankar 244895936485SShri Abhyankar /* receive message of values*/ 244995936485SShri Abhyankar vals = buf; 245095936485SShri Abhyankar mycols = ibuf; 245195936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 245295936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 245395936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 245495936485SShri Abhyankar 245595936485SShri Abhyankar /* insert into matrix */ 245695936485SShri Abhyankar jj = rstart*bs; 245795936485SShri Abhyankar for (i=0; i<m; i++) { 245895936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 245995936485SShri Abhyankar mycols += locrowlens[i]; 246095936485SShri Abhyankar vals += locrowlens[i]; 246195936485SShri Abhyankar jj++; 246295936485SShri Abhyankar } 246395936485SShri Abhyankar } 246495936485SShri Abhyankar 246595936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 246695936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 246795936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 246895936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 246995936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 247095936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 247195936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 247295936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 247395936485SShri Abhyankar PetscFunctionReturn(0); 247495936485SShri Abhyankar } 247595936485SShri Abhyankar 247695936485SShri Abhyankar #undef __FUNCT__ 24774a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2478dcf5cc72SBarry Smith /*XXXXX@ 2479a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2480a30f8f8cSSatish Balay 2481a30f8f8cSSatish Balay Input Parameters: 2482a30f8f8cSSatish Balay . mat - the matrix 2483a30f8f8cSSatish Balay . fact - factor 2484a30f8f8cSSatish Balay 2485c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2486a30f8f8cSSatish Balay 2487a30f8f8cSSatish Balay Level: advanced 2488a30f8f8cSSatish Balay 2489a30f8f8cSSatish Balay Notes: 2490a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2491a30f8f8cSSatish Balay 2492a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2493a30f8f8cSSatish Balay 2494a30f8f8cSSatish Balay .seealso: MatSetOption() 2495dcf5cc72SBarry Smith @XXXXX*/ 2496dcf5cc72SBarry Smith 249724d5174aSHong Zhang 24984a2ae208SSatish Balay #undef __FUNCT__ 2499985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2500985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 250124d5174aSHong Zhang { 250224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2503f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2504ca54ac64SHong Zhang PetscReal atmp; 250587828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2506dfbe8321SBarry Smith PetscErrorCode ierr; 25071302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25081302d50aSBarry Smith PetscMPIInt rank,size; 25091302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 251087828ca2SBarry Smith PetscScalar *va; 25118a1c53f2SBarry Smith MatScalar *ba; 2512f4c0e9e4SHong Zhang MPI_Status stat; 251324d5174aSHong Zhang 251424d5174aSHong Zhang PetscFunctionBegin; 2515e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2516985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 25171ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2518f4c0e9e4SHong Zhang 25197adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 25207adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2521f4c0e9e4SHong Zhang 2522d0f46423SBarry Smith bs = A->rmap->bs; 2523f4c0e9e4SHong Zhang mbs = a->mbs; 2524f4c0e9e4SHong Zhang Mbs = a->Mbs; 2525f4c0e9e4SHong Zhang ba = b->a; 2526f4c0e9e4SHong Zhang bi = b->i; 2527f4c0e9e4SHong Zhang bj = b->j; 2528f4c0e9e4SHong Zhang 2529f4c0e9e4SHong Zhang /* find ownerships */ 2530d0f46423SBarry Smith rowners_bs = A->rmap->range; 2531f4c0e9e4SHong Zhang 2532f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 253382502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2534ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2535f4c0e9e4SHong Zhang 2536f4c0e9e4SHong Zhang /* row_max for B */ 2537b8475685SHong Zhang if (rank != size-1){ 2538f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2539f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2540f4c0e9e4SHong Zhang brow = bs*i; 2541f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2542f4c0e9e4SHong Zhang bcol = bs*(*bj); 2543f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2544ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 254504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2546f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2547f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2548ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2549ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2550f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2551f4c0e9e4SHong Zhang } 2552f4c0e9e4SHong Zhang } 2553f4c0e9e4SHong Zhang bj++; 2554f4c0e9e4SHong Zhang } 2555f4c0e9e4SHong Zhang } 2556f4c0e9e4SHong Zhang 2557f4c0e9e4SHong Zhang /* send values to its owners */ 2558f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2559f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2560ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 25617adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2562ca54ac64SHong Zhang } 2563f4c0e9e4SHong Zhang } 2564f4c0e9e4SHong Zhang 2565f4c0e9e4SHong Zhang /* receive values */ 2566ca54ac64SHong Zhang if (rank){ 2567f4c0e9e4SHong Zhang rvalues = work; 2568ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2569f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 25707adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2571f4c0e9e4SHong Zhang /* process values */ 2572f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2573ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2574f4c0e9e4SHong Zhang } 2575f4c0e9e4SHong Zhang } 2576ca54ac64SHong Zhang } 2577f4c0e9e4SHong Zhang 25781ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2579ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 258024d5174aSHong Zhang PetscFunctionReturn(0); 258124d5174aSHong Zhang } 25822798e883SHong Zhang 25832798e883SHong Zhang #undef __FUNCT__ 258441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 258541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25862798e883SHong Zhang { 25872798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2588dfbe8321SBarry Smith PetscErrorCode ierr; 2589d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25903649974fSBarry Smith PetscScalar *x,*ptr,*from; 2591ffe4fb16SHong Zhang Vec bb1; 25923649974fSBarry Smith const PetscScalar *b; 2593ffe4fb16SHong Zhang 2594ffe4fb16SHong Zhang PetscFunctionBegin; 2595e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2596e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2597ffe4fb16SHong Zhang 2598a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 259941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2600a2b30743SBarry Smith PetscFunctionReturn(0); 2601a2b30743SBarry Smith } 2602a2b30743SBarry Smith 2603ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2604ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 260541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2606ffe4fb16SHong Zhang its--; 2607ffe4fb16SHong Zhang } 2608ffe4fb16SHong Zhang 2609ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2610ffe4fb16SHong Zhang while (its--){ 2611ffe4fb16SHong Zhang 2612ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2613ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2614ffe4fb16SHong Zhang 2615ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26161ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 26171ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2618ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26191ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2620ffe4fb16SHong Zhang 2621efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2622ffe4fb16SHong Zhang 2623ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26241ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 26253649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2626ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26271ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2628ffe4fb16SHong Zhang 2629ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2630fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2631ffe4fb16SHong Zhang 2632ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26331ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2634a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2635ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2636ffe4fb16SHong Zhang 2637ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2638ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2639ffe4fb16SHong Zhang 2640ffe4fb16SHong Zhang /* local diagonal sweep */ 264141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2642ffe4fb16SHong Zhang } 26436bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2644fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 264541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2646fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 264741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2648fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2649fa22f6d0SBarry Smith Vec xx1; 2650ace3abfcSBarry Smith PetscBool hasop; 265120f1ed55SBarry Smith const PetscScalar *diag; 2652887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 265320f1ed55SBarry Smith PetscInt i,n; 2654fa22f6d0SBarry Smith 2655fa22f6d0SBarry Smith if (!mat->xx1) { 2656fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2657fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2658fa22f6d0SBarry Smith } 2659fa22f6d0SBarry Smith xx1 = mat->xx1; 2660fa22f6d0SBarry Smith bb1 = mat->bb1; 2661fa22f6d0SBarry Smith 266241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2663fa22f6d0SBarry Smith 2664fa22f6d0SBarry Smith if (!mat->diag) { 2665effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2666fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2667fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2668fa22f6d0SBarry Smith } 2669fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2670fa22f6d0SBarry Smith 2671fa22f6d0SBarry Smith if (hasop) { 2672fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2673887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 267420f1ed55SBarry Smith } else { 267520f1ed55SBarry Smith /* 267620f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 267720f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2678887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 267920f1ed55SBarry Smith */ 268020f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26813649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26823649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 268320f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 268420f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2685887ee2caSBarry Smith if (omega == 1.0) { 268620f1ed55SBarry Smith for (i=0; i<n; i++) { 268720f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 268820f1ed55SBarry Smith } 268920f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2690887ee2caSBarry Smith } else { 2691887ee2caSBarry Smith for (i=0; i<n; i++) { 2692887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2693887ee2caSBarry Smith } 2694887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2695887ee2caSBarry Smith } 269620f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26973649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26983649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 269920f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 270020f1ed55SBarry Smith } 2701fa22f6d0SBarry Smith 2702fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2703fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2704fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2705fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2706fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2707fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2708fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2709fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2710fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2711fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2712effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2713fa22f6d0SBarry Smith 2714fa22f6d0SBarry Smith /* local sweep */ 271541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2716fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2717ffe4fb16SHong Zhang } else { 2718e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2719ffe4fb16SHong Zhang } 2720ffe4fb16SHong Zhang PetscFunctionReturn(0); 2721ffe4fb16SHong Zhang } 2722ffe4fb16SHong Zhang 2723ffe4fb16SHong Zhang #undef __FUNCT__ 272441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 272541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2726ffe4fb16SHong Zhang { 2727ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2728dfbe8321SBarry Smith PetscErrorCode ierr; 27292798e883SHong Zhang Vec lvec1,bb1; 27302798e883SHong Zhang 27312798e883SHong Zhang PetscFunctionBegin; 2732e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2733e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 27342798e883SHong Zhang 2735c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 27362798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 273741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27382798e883SHong Zhang its--; 27392798e883SHong Zhang } 27402798e883SHong Zhang 27412798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27422798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27432798e883SHong Zhang while (its--){ 2744ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27452798e883SHong Zhang 27462798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27472798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2748efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27492798e883SHong Zhang 2750ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27512798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2752ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27532798e883SHong Zhang 27542798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2755efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 27562798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27572798e883SHong Zhang 2758ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27592798e883SHong Zhang 2760c14dc6b6SHong Zhang /* diagonal sweep */ 276141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27622798e883SHong Zhang } 27636bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27646bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27656bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27662798e883SHong Zhang PetscFunctionReturn(0); 27672798e883SHong Zhang } 27682798e883SHong Zhang 2769dfb205c3SBarry Smith #undef __FUNCT__ 2770dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2771dfb205c3SBarry Smith /*@ 2772dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2773dfb205c3SBarry Smith CSR format the local rows. 2774dfb205c3SBarry Smith 2775dfb205c3SBarry Smith Collective on MPI_Comm 2776dfb205c3SBarry Smith 2777dfb205c3SBarry Smith Input Parameters: 2778dfb205c3SBarry Smith + comm - MPI communicator 2779dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2780dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2781dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2782dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2783dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2784dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2785dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2786dfb205c3SBarry Smith . i - row indices 2787dfb205c3SBarry Smith . j - column indices 2788dfb205c3SBarry Smith - a - matrix values 2789dfb205c3SBarry Smith 2790dfb205c3SBarry Smith Output Parameter: 2791dfb205c3SBarry Smith . mat - the matrix 2792dfb205c3SBarry Smith 2793dfb205c3SBarry Smith Level: intermediate 2794dfb205c3SBarry Smith 2795dfb205c3SBarry Smith Notes: 2796dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2797dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2798dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2799dfb205c3SBarry Smith 2800dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2801dfb205c3SBarry Smith 2802dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2803dfb205c3SBarry Smith 2804dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 2805dfb205c3SBarry Smith MPIAIJ, MatCreateMPIAIJ(), MatCreateMPIAIJWithSplitArrays() 2806dfb205c3SBarry Smith @*/ 28077087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2808dfb205c3SBarry Smith { 2809dfb205c3SBarry Smith PetscErrorCode ierr; 2810dfb205c3SBarry Smith 2811dfb205c3SBarry Smith 2812dfb205c3SBarry Smith PetscFunctionBegin; 2813dfb205c3SBarry Smith if (i[0]) { 2814dfb205c3SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2815dfb205c3SBarry Smith } 2816dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2817dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2818dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2819dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2820dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2821dfb205c3SBarry Smith PetscFunctionReturn(0); 2822dfb205c3SBarry Smith } 2823dfb205c3SBarry Smith 2824dfb205c3SBarry Smith 2825dfb205c3SBarry Smith #undef __FUNCT__ 2826dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2827dfb205c3SBarry Smith /*@C 2828dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2829dfb205c3SBarry Smith (the default parallel PETSc format). 2830dfb205c3SBarry Smith 2831dfb205c3SBarry Smith Collective on MPI_Comm 2832dfb205c3SBarry Smith 2833dfb205c3SBarry Smith Input Parameters: 2834dfb205c3SBarry Smith + A - the matrix 2835dfb205c3SBarry Smith . bs - the block size 2836dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2837dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2838dfb205c3SBarry Smith - v - optional values in the matrix 2839dfb205c3SBarry Smith 2840dfb205c3SBarry Smith Level: developer 2841dfb205c3SBarry Smith 2842dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2843dfb205c3SBarry Smith 2844dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2845dfb205c3SBarry Smith @*/ 28467087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2847dfb205c3SBarry Smith { 28484ac538c5SBarry Smith PetscErrorCode ierr; 2849dfb205c3SBarry Smith 2850dfb205c3SBarry Smith PetscFunctionBegin; 28514ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2852dfb205c3SBarry Smith PetscFunctionReturn(0); 2853dfb205c3SBarry Smith } 2854dfb205c3SBarry Smith 2855dfb205c3SBarry Smith 2856