1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 387087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 39a30f8f8cSSatish Balay { 40f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 41dfbe8321SBarry Smith PetscErrorCode ierr; 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay PetscFunctionBegin; 44a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 45a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 46a30f8f8cSSatish Balay PetscFunctionReturn(0); 47a30f8f8cSSatish Balay } 48a30f8f8cSSatish Balay 49a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 50a30f8f8cSSatish Balay { \ 51a30f8f8cSSatish Balay \ 52a30f8f8cSSatish Balay brow = row/bs; \ 53a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 54a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 55a30f8f8cSSatish Balay bcol = col/bs; \ 56a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 57a30f8f8cSSatish Balay low = 0; high = nrow; \ 58a30f8f8cSSatish Balay while (high-low > 3) { \ 59a30f8f8cSSatish Balay t = (low+high)/2; \ 60a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 61a30f8f8cSSatish Balay else low = t; \ 62a30f8f8cSSatish Balay } \ 63a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 64a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 65a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 66a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 67a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 68a30f8f8cSSatish Balay else *bap = value; \ 69a30f8f8cSSatish Balay goto a_noinsert; \ 70a30f8f8cSSatish Balay } \ 71a30f8f8cSSatish Balay } \ 72a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 73e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 74fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 75a30f8f8cSSatish Balay N = nrow++ - 1; \ 76a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 77a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 78a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 79a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 80a30f8f8cSSatish Balay } \ 81a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 82a30f8f8cSSatish Balay rp[_i] = bcol; \ 83a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 84e56f5c9eSBarry Smith A->nonzerostate++;\ 85a30f8f8cSSatish Balay a_noinsert:; \ 86a30f8f8cSSatish Balay ailen[brow] = nrow; \ 87a30f8f8cSSatish Balay } 88e5e170daSBarry Smith 89a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 90a30f8f8cSSatish Balay { \ 91a30f8f8cSSatish Balay brow = row/bs; \ 92a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 93a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 94a30f8f8cSSatish Balay bcol = col/bs; \ 95a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 96a30f8f8cSSatish Balay low = 0; high = nrow; \ 97a30f8f8cSSatish Balay while (high-low > 3) { \ 98a30f8f8cSSatish Balay t = (low+high)/2; \ 99a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 100a30f8f8cSSatish Balay else low = t; \ 101a30f8f8cSSatish Balay } \ 102a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 103a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 104a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 105a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 106a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 107a30f8f8cSSatish Balay else *bap = value; \ 108a30f8f8cSSatish Balay goto b_noinsert; \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay } \ 111a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 112e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 113fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 114a30f8f8cSSatish Balay N = nrow++ - 1; \ 115a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 116a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 117a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 118a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay } \ 120a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 121a30f8f8cSSatish Balay rp[_i] = bcol; \ 122a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 123e56f5c9eSBarry Smith B->nonzerostate++;\ 124a30f8f8cSSatish Balay b_noinsert:; \ 125a30f8f8cSSatish Balay bilen[brow] = nrow; \ 126a30f8f8cSSatish Balay } 127a30f8f8cSSatish Balay 128a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 129a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 130a30f8f8cSSatish Balay */ 1314a2ae208SSatish Balay #undef __FUNCT__ 132dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 133dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 134a30f8f8cSSatish Balay { 135a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 136a30f8f8cSSatish Balay MatScalar value; 137ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 138dfbe8321SBarry Smith PetscErrorCode ierr; 1391302d50aSBarry Smith PetscInt i,j,row,col; 140d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 141d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 142d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 143a30f8f8cSSatish Balay 144a30f8f8cSSatish Balay /* Some Variables required in the macro */ 145a30f8f8cSSatish Balay Mat A = baij->A; 146a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1471302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 148a30f8f8cSSatish Balay MatScalar *aa =a->a; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay Mat B = baij->B; 151a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1521302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 153a30f8f8cSSatish Balay MatScalar *ba =b->a; 154a30f8f8cSSatish Balay 1551302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1561302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 157a30f8f8cSSatish Balay MatScalar *ap,*bap; 158a30f8f8cSSatish Balay 159a30f8f8cSSatish Balay /* for stash */ 1600298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1610298fd71SBarry Smith MatScalar *v_loc = NULL; 162a30f8f8cSSatish Balay 163a30f8f8cSSatish Balay PetscFunctionBegin; 164a30f8f8cSSatish Balay if (!baij->donotstash) { 16559ffdab8SBarry Smith if (n > baij->n_loc) { 16659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 16759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 168785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 169785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 17026fbe8dcSKarl Rupp 17159ffdab8SBarry Smith baij->n_loc = n; 17259ffdab8SBarry Smith } 17359ffdab8SBarry Smith in_loc = baij->in_loc; 17459ffdab8SBarry Smith v_loc = baij->v_loc; 175a30f8f8cSSatish Balay } 176a30f8f8cSSatish Balay 177a30f8f8cSSatish Balay for (i=0; i<m; i++) { 178a30f8f8cSSatish Balay if (im[i] < 0) continue; 1792515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 180e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 181a30f8f8cSSatish Balay #endif 182a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 183a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 184a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18501b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 18601b2bd88SHong Zhang if (a->ignore_ltriangular) { 18701b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 18826fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 18901b2bd88SHong Zhang } 190a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 191a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 192a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 193a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 194db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 195db4deed7SKarl Rupp else value = v[i+j*m]; 196a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 197a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 198a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 200cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 201a30f8f8cSSatish Balay #endif 202a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 203a30f8f8cSSatish Balay if (mat->was_assembled) { 204a30f8f8cSSatish Balay if (!baij->colmap) { 205ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 206a30f8f8cSSatish Balay } 207a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 208a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 20971730473SSatish Balay col = col - 1; 210a30f8f8cSSatish Balay #else 21171730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 212a30f8f8cSSatish Balay #endif 213a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 214ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 215a30f8f8cSSatish Balay col = in[j]; 216a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 217a30f8f8cSSatish Balay B = baij->B; 218a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 219a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 220a30f8f8cSSatish Balay ba = b->a; 22171730473SSatish Balay } else col += in[j]%bs; 222a30f8f8cSSatish Balay } else col = in[j]; 223db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 224db4deed7SKarl Rupp else value = v[i+j*m]; 225a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 226a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 227a30f8f8cSSatish Balay } 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay } else { /* off processor entry */ 2304cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 231a30f8f8cSSatish Balay if (!baij->donotstash) { 2325080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 233a30f8f8cSSatish Balay n_loc = 0; 234a30f8f8cSSatish Balay for (j=0; j<n; j++) { 235f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 236a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 237a30f8f8cSSatish Balay if (roworiented) { 238a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 239a30f8f8cSSatish Balay } else { 240a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 241a30f8f8cSSatish Balay } 242a30f8f8cSSatish Balay n_loc++; 243a30f8f8cSSatish Balay } 244b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay } 248a30f8f8cSSatish Balay PetscFunctionReturn(0); 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay 2514a2ae208SSatish Balay #undef __FUNCT__ 252dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 253dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 254a30f8f8cSSatish Balay { 2550880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 256f15d580aSBarry Smith const MatScalar *value; 257f15d580aSBarry Smith MatScalar *barray =baij->barray; 258ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 259dfbe8321SBarry Smith PetscErrorCode ierr; 260899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 261899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 262d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2630880e062SHong Zhang 264a30f8f8cSSatish Balay PetscFunctionBegin; 2650880e062SHong Zhang if (!barray) { 266785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 2670880e062SHong Zhang baij->barray = barray; 2680880e062SHong Zhang } 2690880e062SHong Zhang 2700880e062SHong Zhang if (roworiented) { 2710880e062SHong Zhang stepval = (n-1)*bs; 2720880e062SHong Zhang } else { 2730880e062SHong Zhang stepval = (m-1)*bs; 2740880e062SHong Zhang } 2750880e062SHong Zhang for (i=0; i<m; i++) { 2760880e062SHong Zhang if (im[i] < 0) continue; 2772515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 278e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2790880e062SHong Zhang #endif 2800880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2810880e062SHong Zhang row = im[i] - rstart; 2820880e062SHong Zhang for (j=0; j<n; j++) { 283f3f98c53SJed Brown if (im[i] > in[j]) { 284f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 285e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 286f3f98c53SJed Brown } 2870880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2880880e062SHong Zhang if ((roworiented) && (n == 1)) { 289f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2900880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 291f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2920880e062SHong Zhang } else { /* Here a copy is required */ 2930880e062SHong Zhang if (roworiented) { 2940880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2950880e062SHong Zhang } else { 2960880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2970880e062SHong Zhang } 2980880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2990880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3000880e062SHong Zhang *barray++ = *value++; 3010880e062SHong Zhang } 3020880e062SHong Zhang } 3030880e062SHong Zhang barray -=bs2; 3040880e062SHong Zhang } 3050880e062SHong Zhang 3060880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 3070880e062SHong Zhang col = in[j] - cstart; 3080880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 30926fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 311cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3120880e062SHong Zhang #endif 3130880e062SHong Zhang else { 3140880e062SHong Zhang if (mat->was_assembled) { 3150880e062SHong Zhang if (!baij->colmap) { 316ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3170880e062SHong Zhang } 3180880e062SHong Zhang 3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3200880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3211302d50aSBarry Smith { PetscInt data; 3220880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 323e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3240880e062SHong Zhang } 3250880e062SHong Zhang #else 326e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang #endif 3280880e062SHong Zhang #endif 3290880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3300880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3310880e062SHong Zhang col = (col - 1)/bs; 3320880e062SHong Zhang #else 3330880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3340880e062SHong Zhang #endif 3350880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 336ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3370880e062SHong Zhang col = in[j]; 3380880e062SHong Zhang } 33926fbe8dcSKarl Rupp } else col = in[j]; 340e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3410880e062SHong Zhang } 3420880e062SHong Zhang } 3430880e062SHong Zhang } else { 3444cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3450880e062SHong Zhang if (!baij->donotstash) { 3460880e062SHong Zhang if (roworiented) { 3470880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3480880e062SHong Zhang } else { 3490880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3500880e062SHong Zhang } 3510880e062SHong Zhang } 3520880e062SHong Zhang } 3530880e062SHong Zhang } 3540880e062SHong Zhang PetscFunctionReturn(0); 355a30f8f8cSSatish Balay } 356a30f8f8cSSatish Balay 3574a2ae208SSatish Balay #undef __FUNCT__ 3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 360a30f8f8cSSatish Balay { 361f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3626849ba73SBarry Smith PetscErrorCode ierr; 363d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 364d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 365a30f8f8cSSatish Balay 366a30f8f8cSSatish Balay PetscFunctionBegin; 367a30f8f8cSSatish Balay for (i=0; i<m; i++) { 368e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 369e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 370a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 371a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 372a30f8f8cSSatish Balay for (j=0; j<n; j++) { 373e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 374e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 375a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 376a30f8f8cSSatish Balay col = idxn[j] - bscstart; 377c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 378a30f8f8cSSatish Balay } else { 379a30f8f8cSSatish Balay if (!baij->colmap) { 380ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } 382a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 383a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 384a30f8f8cSSatish Balay data--; 385a30f8f8cSSatish Balay #else 386a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 387a30f8f8cSSatish Balay #endif 388a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 389a30f8f8cSSatish Balay else { 390a30f8f8cSSatish Balay col = data + idxn[j]%bs; 391e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 392a30f8f8cSSatish Balay } 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay } 395f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay PetscFunctionReturn(0); 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay 4004a2ae208SSatish Balay #undef __FUNCT__ 4014a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 402dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 403a30f8f8cSSatish Balay { 404a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 405dfbe8321SBarry Smith PetscErrorCode ierr; 406a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 407a30f8f8cSSatish Balay 408a30f8f8cSSatish Balay PetscFunctionBegin; 409a30f8f8cSSatish Balay if (baij->size == 1) { 410a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 411a30f8f8cSSatish Balay } else { 412a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 413785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 414a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 415a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 416a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 418ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4198f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 420a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4210b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4220b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4230b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4240b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 425899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 426d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4270b8dc8d2SHong Zhang MatScalar *v; 4280b8dc8d2SHong Zhang 429dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 430d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4310b8dc8d2SHong Zhang /* Amat */ 4320b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4330b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4340b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4350b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4360b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4370b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4380b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4390b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4400b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4410b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4420b8dc8d2SHong Zhang /* non-diagonal block */ 4430b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4440b8dc8d2SHong Zhang } 4450b8dc8d2SHong Zhang } 4460b8dc8d2SHong Zhang } 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang /* Bmat */ 4490b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4500b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4510b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4520b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4530b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4540b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4550b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4560b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4570b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4580b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4590b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4600b8dc8d2SHong Zhang } 4610b8dc8d2SHong Zhang } 4620b8dc8d2SHong Zhang } 4630b8dc8d2SHong Zhang } 464ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4650b8dc8d2SHong Zhang *norm = 0.0; 466d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4670b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4680b8dc8d2SHong Zhang } 46974ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 470f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 471a30f8f8cSSatish Balay } 472a30f8f8cSSatish Balay PetscFunctionReturn(0); 473a30f8f8cSSatish Balay } 474a30f8f8cSSatish Balay 4754a2ae208SSatish Balay #undef __FUNCT__ 4764a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 477dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 478a30f8f8cSSatish Balay { 479a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 480dfbe8321SBarry Smith PetscErrorCode ierr; 4811302d50aSBarry Smith PetscInt nstash,reallocs; 482a30f8f8cSSatish Balay InsertMode addv; 483a30f8f8cSSatish Balay 484a30f8f8cSSatish Balay PetscFunctionBegin; 48526fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 486a30f8f8cSSatish Balay 487a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 488ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 489ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 490a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 491a30f8f8cSSatish Balay 492d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4931e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 494a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4951e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 496a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4971e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 498a30f8f8cSSatish Balay PetscFunctionReturn(0); 499a30f8f8cSSatish Balay } 500a30f8f8cSSatish Balay 5014a2ae208SSatish Balay #undef __FUNCT__ 5024a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 503dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 504a30f8f8cSSatish Balay { 505a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 506a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 5076849ba73SBarry Smith PetscErrorCode ierr; 50813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 509e44c0bd4SBarry Smith PetscInt *row,*col; 510ace3abfcSBarry Smith PetscBool other_disassembled; 51113f74950SBarry Smith PetscMPIInt n; 512ace3abfcSBarry Smith PetscBool r1,r2,r3; 513a30f8f8cSSatish Balay MatScalar *val; 514a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 515a30f8f8cSSatish Balay 51691c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 517a30f8f8cSSatish Balay PetscFunctionBegin; 5184cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 519a30f8f8cSSatish Balay while (1) { 520a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 521a30f8f8cSSatish Balay if (!flg) break; 522a30f8f8cSSatish Balay 523a30f8f8cSSatish Balay for (i=0; i<n;) { 524a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 52526fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 52626fbe8dcSKarl Rupp if (row[j] != rstart) break; 52726fbe8dcSKarl Rupp } 528a30f8f8cSSatish Balay if (j < n) ncols = j-i; 529a30f8f8cSSatish Balay else ncols = n-i; 530a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 531dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 532a30f8f8cSSatish Balay i = j; 533a30f8f8cSSatish Balay } 534a30f8f8cSSatish Balay } 535a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 536a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 537a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 538a30f8f8cSSatish Balay restore the original flags */ 539a30f8f8cSSatish Balay r1 = baij->roworiented; 540a30f8f8cSSatish Balay r2 = a->roworiented; 54191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 54226fbe8dcSKarl Rupp 543a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 544a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 54526fbe8dcSKarl Rupp 54691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 547a30f8f8cSSatish Balay while (1) { 548a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 549a30f8f8cSSatish Balay if (!flg) break; 550a30f8f8cSSatish Balay 551a30f8f8cSSatish Balay for (i=0; i<n;) { 552a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 55326fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 55426fbe8dcSKarl Rupp if (row[j] != rstart) break; 55526fbe8dcSKarl Rupp } 556a30f8f8cSSatish Balay if (j < n) ncols = j-i; 557a30f8f8cSSatish Balay else ncols = n-i; 558dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 559a30f8f8cSSatish Balay i = j; 560a30f8f8cSSatish Balay } 561a30f8f8cSSatish Balay } 562a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 56326fbe8dcSKarl Rupp 564a30f8f8cSSatish Balay baij->roworiented = r1; 565a30f8f8cSSatish Balay a->roworiented = r2; 56626fbe8dcSKarl Rupp 56791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay 570a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 571a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 574a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 575a30f8f8cSSatish Balay /* 576a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 577a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 578a30f8f8cSSatish Balay */ 579a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 580ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 581a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 582ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay } 585a30f8f8cSSatish Balay 586a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58740781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 590a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 591a30f8f8cSSatish Balay 59274ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 59326fbe8dcSKarl Rupp 594a30f8f8cSSatish Balay baij->rowvalues = 0; 5954f9cfa9eSBarry Smith 5964f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 5974f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 598e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 59909e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 600e56f5c9eSBarry Smith } 601a30f8f8cSSatish Balay PetscFunctionReturn(0); 602a30f8f8cSSatish Balay } 603a30f8f8cSSatish Balay 6047da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6069804daf3SBarry Smith #include <petscdraw.h> 6074a2ae208SSatish Balay #undef __FUNCT__ 6084a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6096849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 610a30f8f8cSSatish Balay { 611a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 612dfbe8321SBarry Smith PetscErrorCode ierr; 613d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6147da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 615ace3abfcSBarry Smith PetscBool iascii,isdraw; 616b0a32e0cSBarry Smith PetscViewer sviewer; 617f3ef73ceSBarry Smith PetscViewerFormat format; 618a30f8f8cSSatish Balay 619a30f8f8cSSatish Balay PetscFunctionBegin; 620251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 621251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 62232077d6dSBarry Smith if (iascii) { 623b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 624456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 625a30f8f8cSSatish Balay MatInfo info; 626ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 627a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6287b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6297b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 631e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 632a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 633e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 634b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6357b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 63607d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 637a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 638a30f8f8cSSatish Balay PetscFunctionReturn(0); 639fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 64077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 641a30f8f8cSSatish Balay PetscFunctionReturn(0); 642c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 643c1490034SHong Zhang PetscFunctionReturn(0); 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay 647a30f8f8cSSatish Balay if (isdraw) { 648b0a32e0cSBarry Smith PetscDraw draw; 649ace3abfcSBarry Smith PetscBool isnull; 650b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 651b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 652a30f8f8cSSatish Balay } 653a30f8f8cSSatish Balay 6547da1fb6eSBarry Smith { 655a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 656a30f8f8cSSatish Balay Mat A; 65765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 659d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 660a30f8f8cSSatish Balay MatScalar *a; 661a30f8f8cSSatish Balay 662f204ca49SKris Buschelman /* Should this be the same type as mat? */ 663ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 664a30f8f8cSSatish Balay if (!rank) { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } else { 667f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 668a30f8f8cSSatish Balay } 669f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6700298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6712b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6723bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay /* copy over the A part */ 67565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 676a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 677785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 678a30f8f8cSSatish Balay 679a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 680e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 68126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 682a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 683e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 684a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 685dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 68626fbe8dcSKarl Rupp col++; 68726fbe8dcSKarl Rupp a += bs; 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay } 691a30f8f8cSSatish Balay /* copy over the B part */ 69265d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69365d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 694a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 695e9f7bc9eSHong Zhang 696e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 69726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 698a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 699a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 700a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 701799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 70226fbe8dcSKarl Rupp col++; 70326fbe8dcSKarl Rupp a += bs; 704a30f8f8cSSatish Balay } 705a30f8f8cSSatish Balay } 706a30f8f8cSSatish Balay } 707a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 708a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 709a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 710a30f8f8cSSatish Balay /* 711a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 712b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 713a30f8f8cSSatish Balay */ 714b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71565d70643SHong Zhang if (!rank) { 7167da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 717a30f8f8cSSatish Balay } 718b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7196bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 720a30f8f8cSSatish Balay } 721a30f8f8cSSatish Balay PetscFunctionReturn(0); 722a30f8f8cSSatish Balay } 723a30f8f8cSSatish Balay 7244a2ae208SSatish Balay #undef __FUNCT__ 7254a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 726dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 727a30f8f8cSSatish Balay { 728dfbe8321SBarry Smith PetscErrorCode ierr; 729ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 730a30f8f8cSSatish Balay 731a30f8f8cSSatish Balay PetscFunctionBegin; 732251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 733251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 734251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 735251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73632077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 737a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay PetscFunctionReturn(0); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay 7424a2ae208SSatish Balay #undef __FUNCT__ 7434a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 744dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 745a30f8f8cSSatish Balay { 746a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 748a30f8f8cSSatish Balay 749a30f8f8cSSatish Balay PetscFunctionBegin; 750a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 751d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 752a30f8f8cSSatish Balay #endif 75381bf3e96SHong Zhang ierr = MatDestroy_Redundant(&mat->redundant);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7566bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7576bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 758a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7596bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 760a30f8f8cSSatish Balay #else 76105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 762a30f8f8cSSatish Balay #endif 76305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7646bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7656bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7666bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7676bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7686bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7706bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7716bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7725755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7756bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7766bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7776bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 778ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 77905b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 780a30f8f8cSSatish Balay #endif 78159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 783899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 784bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 785901853e0SKris Buschelman 786dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 787bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 788bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 789bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 790bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 791bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 792a30f8f8cSSatish Balay PetscFunctionReturn(0); 793a30f8f8cSSatish Balay } 794a30f8f8cSSatish Balay 7954a2ae208SSatish Balay #undef __FUNCT__ 796547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 797547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 798547795f9SHong Zhang { 799547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 800547795f9SHong Zhang PetscErrorCode ierr; 801547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 802547795f9SHong Zhang PetscScalar *x,*from; 803547795f9SHong Zhang 804547795f9SHong Zhang PetscFunctionBegin; 805547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 806e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 807547795f9SHong Zhang 808547795f9SHong Zhang /* diagonal part */ 809547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 810547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 811547795f9SHong Zhang 812547795f9SHong Zhang /* subdiagonal part */ 813547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 814547795f9SHong Zhang 815547795f9SHong Zhang /* copy x into the vec slvec0 */ 816547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 817547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 818547795f9SHong Zhang 819547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 820547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 821547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 822547795f9SHong Zhang 823547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 824547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 825547795f9SHong Zhang /* supperdiagonal part */ 826547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 827547795f9SHong Zhang PetscFunctionReturn(0); 828547795f9SHong Zhang } 829547795f9SHong Zhang 830547795f9SHong Zhang #undef __FUNCT__ 831a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 832dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 833a9d4b620SHong Zhang { 834a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 835dfbe8321SBarry Smith PetscErrorCode ierr; 836d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 837fa22f6d0SBarry Smith PetscScalar *x,*from; 838a9d4b620SHong Zhang 839a9d4b620SHong Zhang PetscFunctionBegin; 840a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 841e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 842a9d4b620SHong Zhang 843a9d4b620SHong Zhang /* diagonal part */ 844a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 845fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 846a9d4b620SHong Zhang 847a9d4b620SHong Zhang /* subdiagonal part */ 848a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 849fc165ae2SBarry Smith 850a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8511ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8521ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 853a9d4b620SHong Zhang 854fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 855fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8561ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 857fc165ae2SBarry Smith 858fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 859ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 860a9d4b620SHong Zhang /* supperdiagonal part */ 861a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 862a9d4b620SHong Zhang PetscFunctionReturn(0); 863a9d4b620SHong Zhang } 864a9d4b620SHong Zhang 865a9d4b620SHong Zhang #undef __FUNCT__ 86640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 867dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 868a30f8f8cSSatish Balay { 869a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 870dfbe8321SBarry Smith PetscErrorCode ierr; 8711302d50aSBarry Smith PetscInt nt; 872a30f8f8cSSatish Balay 873a30f8f8cSSatish Balay PetscFunctionBegin; 874a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 875e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 876e7e72b3dSBarry Smith 877a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 878e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 87965d70643SHong Zhang 880ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 881b941877fSHong Zhang /* do diagonal part */ 882b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 883b941877fSHong Zhang /* do supperdiagonal part */ 884ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 885b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 886b941877fSHong Zhang /* do subdiagonal part */ 887b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 888ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 889ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 890a30f8f8cSSatish Balay PetscFunctionReturn(0); 891a30f8f8cSSatish Balay } 892a30f8f8cSSatish Balay 8934a2ae208SSatish Balay #undef __FUNCT__ 8944a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 895dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 896a30f8f8cSSatish Balay { 897de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 898dfbe8321SBarry Smith PetscErrorCode ierr; 899d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 900a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 901a9d4b620SHong Zhang 902a9d4b620SHong Zhang PetscFunctionBegin; 903a9d4b620SHong Zhang /* 904ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 9050ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 906a9d4b620SHong Zhang */ 907a9d4b620SHong Zhang /* diagonal part */ 908a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9092dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 910a9d4b620SHong Zhang 911a9d4b620SHong Zhang /* subdiagonal part */ 912a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 913a9d4b620SHong Zhang 914a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9151ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9161ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 917a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9181ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 919a9d4b620SHong Zhang 920ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9211ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 922ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 923a9d4b620SHong Zhang 924a9d4b620SHong Zhang /* supperdiagonal part */ 925a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 926a9d4b620SHong Zhang PetscFunctionReturn(0); 927a9d4b620SHong Zhang } 928a9d4b620SHong Zhang 929a9d4b620SHong Zhang #undef __FUNCT__ 930a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 931dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 932a9d4b620SHong Zhang { 933a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 934dfbe8321SBarry Smith PetscErrorCode ierr; 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay PetscFunctionBegin; 937ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 938b941877fSHong Zhang /* do diagonal part */ 939b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 940b941877fSHong Zhang /* do supperdiagonal part */ 941ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 942de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 943de8b6608SHong Zhang 944b941877fSHong Zhang /* do subdiagonal part */ 945a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 946ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 947ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 948a30f8f8cSSatish Balay PetscFunctionReturn(0); 949a30f8f8cSSatish Balay } 950a30f8f8cSSatish Balay 951a30f8f8cSSatish Balay /* 952a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 953a30f8f8cSSatish Balay diagonal block 954a30f8f8cSSatish Balay */ 9554a2ae208SSatish Balay #undef __FUNCT__ 9564a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 957dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 958a30f8f8cSSatish Balay { 959a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 960dfbe8321SBarry Smith PetscErrorCode ierr; 961a30f8f8cSSatish Balay 962a30f8f8cSSatish Balay PetscFunctionBegin; 963e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 964a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 965a30f8f8cSSatish Balay PetscFunctionReturn(0); 966a30f8f8cSSatish Balay } 967a30f8f8cSSatish Balay 9684a2ae208SSatish Balay #undef __FUNCT__ 9694a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 970f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 971a30f8f8cSSatish Balay { 972a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 973dfbe8321SBarry Smith PetscErrorCode ierr; 974a30f8f8cSSatish Balay 975a30f8f8cSSatish Balay PetscFunctionBegin; 976f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 977f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 978a30f8f8cSSatish Balay PetscFunctionReturn(0); 979a30f8f8cSSatish Balay } 980a30f8f8cSSatish Balay 9814a2ae208SSatish Balay #undef __FUNCT__ 9824a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9831302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 984a30f8f8cSSatish Balay { 985d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 986d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 987d0d4cfc2SHong Zhang PetscErrorCode ierr; 988d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 989d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 990899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 991d0d4cfc2SHong Zhang 992a30f8f8cSSatish Balay PetscFunctionBegin; 993e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 994d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 995d0d4cfc2SHong Zhang 996d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 997d0d4cfc2SHong Zhang /* 998d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 999d0d4cfc2SHong Zhang */ 1000d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1001d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1002d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1003d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1004d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 100526fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1006d0d4cfc2SHong Zhang } 1007dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1008d0d4cfc2SHong Zhang } 1009d0d4cfc2SHong Zhang 1010e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1011d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1012d0d4cfc2SHong Zhang 1013d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1014d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1015d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1016d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1017d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1018d0d4cfc2SHong Zhang nztot = nzA + nzB; 1019d0d4cfc2SHong Zhang 1020d0d4cfc2SHong Zhang cmap = mat->garray; 1021d0d4cfc2SHong Zhang if (v || idx) { 1022d0d4cfc2SHong Zhang if (nztot) { 1023d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1024d0d4cfc2SHong Zhang PetscInt imark = -1; 1025d0d4cfc2SHong Zhang if (v) { 1026d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1027d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1028d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1029d0d4cfc2SHong Zhang else break; 1030d0d4cfc2SHong Zhang } 1031d0d4cfc2SHong Zhang imark = i; 1032d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1033d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1034d0d4cfc2SHong Zhang } 1035d0d4cfc2SHong Zhang if (idx) { 1036d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1037d0d4cfc2SHong Zhang if (imark > -1) { 1038d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1039d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1040d0d4cfc2SHong Zhang } 1041d0d4cfc2SHong Zhang } else { 1042d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 104326fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1044d0d4cfc2SHong Zhang else break; 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang imark = i; 1047d0d4cfc2SHong Zhang } 1048d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1049d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1050d0d4cfc2SHong Zhang } 1051d0d4cfc2SHong Zhang } else { 1052d0d4cfc2SHong Zhang if (idx) *idx = 0; 1053d0d4cfc2SHong Zhang if (v) *v = 0; 1054d0d4cfc2SHong Zhang } 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang *nz = nztot; 1057d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1058d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1059a30f8f8cSSatish Balay PetscFunctionReturn(0); 1060a30f8f8cSSatish Balay } 1061a30f8f8cSSatish Balay 10624a2ae208SSatish Balay #undef __FUNCT__ 10634a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10641302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1065a30f8f8cSSatish Balay { 1066a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1067a30f8f8cSSatish Balay 1068a30f8f8cSSatish Balay PetscFunctionBegin; 1069e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1070a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1071a30f8f8cSSatish Balay PetscFunctionReturn(0); 1072a30f8f8cSSatish Balay } 1073a30f8f8cSSatish Balay 10744a2ae208SSatish Balay #undef __FUNCT__ 1075d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1076d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1077d0d4cfc2SHong Zhang { 1078d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1079d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1080d0d4cfc2SHong Zhang 1081d0d4cfc2SHong Zhang PetscFunctionBegin; 1082d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1083d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1084d0d4cfc2SHong Zhang } 1085d0d4cfc2SHong Zhang #undef __FUNCT__ 1086d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1087d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1088d0d4cfc2SHong Zhang { 1089d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1090d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1091d0d4cfc2SHong Zhang 1092d0d4cfc2SHong Zhang PetscFunctionBegin; 1093d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1094d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1095d0d4cfc2SHong Zhang } 1096d0d4cfc2SHong Zhang 1097d0d4cfc2SHong Zhang #undef __FUNCT__ 109899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 109999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110099cafbc1SBarry Smith { 110199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110299cafbc1SBarry Smith PetscErrorCode ierr; 110399cafbc1SBarry Smith 110499cafbc1SBarry Smith PetscFunctionBegin; 110599cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 110699cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 110799cafbc1SBarry Smith PetscFunctionReturn(0); 110899cafbc1SBarry Smith } 110999cafbc1SBarry Smith 111099cafbc1SBarry Smith #undef __FUNCT__ 111199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111399cafbc1SBarry Smith { 111499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111599cafbc1SBarry Smith PetscErrorCode ierr; 111699cafbc1SBarry Smith 111799cafbc1SBarry Smith PetscFunctionBegin; 111899cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 111999cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112099cafbc1SBarry Smith PetscFunctionReturn(0); 112199cafbc1SBarry Smith } 112299cafbc1SBarry Smith 112399cafbc1SBarry Smith #undef __FUNCT__ 11244a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1125dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1126a30f8f8cSSatish Balay { 1127a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1128dfbe8321SBarry Smith PetscErrorCode ierr; 1129a30f8f8cSSatish Balay 1130a30f8f8cSSatish Balay PetscFunctionBegin; 1131a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1132a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1133a30f8f8cSSatish Balay PetscFunctionReturn(0); 1134a30f8f8cSSatish Balay } 1135a30f8f8cSSatish Balay 11364a2ae208SSatish Balay #undef __FUNCT__ 11374a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1138dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1139a30f8f8cSSatish Balay { 1140a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1141a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1142dfbe8321SBarry Smith PetscErrorCode ierr; 1143a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1144a30f8f8cSSatish Balay 1145a30f8f8cSSatish Balay PetscFunctionBegin; 1146d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 114726fbe8dcSKarl Rupp 1148a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 114926fbe8dcSKarl Rupp 1150a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1151a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 115226fbe8dcSKarl Rupp 1153a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 115426fbe8dcSKarl Rupp 1155a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1156a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1157a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1158a30f8f8cSSatish Balay info->nz_used = isend[0]; 1159a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1160a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1161a30f8f8cSSatish Balay info->memory = isend[3]; 1162a30f8f8cSSatish Balay info->mallocs = isend[4]; 1163a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1164ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 116526fbe8dcSKarl Rupp 1166a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1167a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1168a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1169a30f8f8cSSatish Balay info->memory = irecv[3]; 1170a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1171a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1172ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 117326fbe8dcSKarl Rupp 1174a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1175a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1176a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1177a30f8f8cSSatish Balay info->memory = irecv[3]; 1178a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1179f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1180a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1181a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1182a30f8f8cSSatish Balay info->factor_mallocs = 0; 1183a30f8f8cSSatish Balay PetscFunctionReturn(0); 1184a30f8f8cSSatish Balay } 1185a30f8f8cSSatish Balay 11864a2ae208SSatish Balay #undef __FUNCT__ 11874a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1188ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1189a30f8f8cSSatish Balay { 1190a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1191d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1192dfbe8321SBarry Smith PetscErrorCode ierr; 1193a30f8f8cSSatish Balay 1194a30f8f8cSSatish Balay PetscFunctionBegin; 1195e98b92d7SKris Buschelman switch (op) { 1196512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1197e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 119828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1199a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1200e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12014e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12024e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1203e98b92d7SKris Buschelman break; 1204e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12054e0d8c25SBarry Smith a->roworiented = flg; 120626fbe8dcSKarl Rupp 12074e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12084e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1209e98b92d7SKris Buschelman break; 12104e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1211290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1212e98b92d7SKris Buschelman break; 1213e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12144e0d8c25SBarry Smith a->donotstash = flg; 1215e98b92d7SKris Buschelman break; 1216e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12174e0d8c25SBarry Smith a->ht_flag = flg; 1218e98b92d7SKris Buschelman break; 12199a4540c5SBarry Smith case MAT_HERMITIAN: 1220e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1221eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 122226fbe8dcSKarl Rupp 1223547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1224eeffb40dSHong Zhang break; 1225ffa07934SHong Zhang case MAT_SPD: 1226ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1227ffa07934SHong Zhang A->spd = flg; 1228ffa07934SHong Zhang if (flg) { 1229ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1230ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1231ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1232ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1233ffa07934SHong Zhang } 1234ffa07934SHong Zhang break; 123577e54ba9SKris Buschelman case MAT_SYMMETRIC: 1236eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1237eeffb40dSHong Zhang break; 123877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1239eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1240eeffb40dSHong Zhang break; 12419a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1242e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1243290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124477e54ba9SKris Buschelman break; 1245d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12464e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1247d0d4cfc2SHong Zhang break; 1248d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12494e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1250d0d4cfc2SHong Zhang break; 1251d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12524e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1253d0d4cfc2SHong Zhang break; 1254e98b92d7SKris Buschelman default: 1255e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay PetscFunctionReturn(0); 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay 12604a2ae208SSatish Balay #undef __FUNCT__ 12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1263a30f8f8cSSatish Balay { 1264dfbe8321SBarry Smith PetscErrorCode ierr; 12656e111a19SKarl Rupp 1266a30f8f8cSSatish Balay PetscFunctionBegin; 1267815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1268999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1269fc4dec0aSBarry Smith } 12708115998fSBarry Smith PetscFunctionReturn(0); 1271a30f8f8cSSatish Balay } 1272a30f8f8cSSatish Balay 12734a2ae208SSatish Balay #undef __FUNCT__ 12744a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1275dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1276a30f8f8cSSatish Balay { 1277a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1278a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1279dfbe8321SBarry Smith PetscErrorCode ierr; 12805e90f9d9SHong Zhang PetscInt nv,m,n; 1281ace3abfcSBarry Smith PetscBool flg; 1282a30f8f8cSSatish Balay 1283a30f8f8cSSatish Balay PetscFunctionBegin; 1284a30f8f8cSSatish Balay if (ll != rr) { 1285b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1286e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1287a30f8f8cSSatish Balay } 1288b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1289b3bf805bSHong Zhang 12905e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1291e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1292b3bf805bSHong Zhang 12935e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1294e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12955e90f9d9SHong Zhang 1296ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12975e90f9d9SHong Zhang 12985e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 12990298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 13005e90f9d9SHong Zhang 13015e90f9d9SHong Zhang /* scale the diagonal part */ 1302a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1303a30f8f8cSSatish Balay 13045e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1305ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13060298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1307a30f8f8cSSatish Balay PetscFunctionReturn(0); 1308a30f8f8cSSatish Balay } 1309a30f8f8cSSatish Balay 13104a2ae208SSatish Balay #undef __FUNCT__ 13114a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1312dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1313a30f8f8cSSatish Balay { 1314f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1315dfbe8321SBarry Smith PetscErrorCode ierr; 1316a30f8f8cSSatish Balay 1317a30f8f8cSSatish Balay PetscFunctionBegin; 1318a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay PetscFunctionReturn(0); 1320a30f8f8cSSatish Balay } 1321a30f8f8cSSatish Balay 13226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1323a30f8f8cSSatish Balay 13244a2ae208SSatish Balay #undef __FUNCT__ 13254a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1326ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1327a30f8f8cSSatish Balay { 1328a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1329a30f8f8cSSatish Balay Mat a,b,c,d; 1330ace3abfcSBarry Smith PetscBool flg; 1331dfbe8321SBarry Smith PetscErrorCode ierr; 1332a30f8f8cSSatish Balay 1333a30f8f8cSSatish Balay PetscFunctionBegin; 1334a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1335a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1336a30f8f8cSSatish Balay 1337a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1338abc0a331SBarry Smith if (flg) { 1339a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1340a30f8f8cSSatish Balay } 1341ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1342a30f8f8cSSatish Balay PetscFunctionReturn(0); 1343a30f8f8cSSatish Balay } 1344a30f8f8cSSatish Balay 13454a2ae208SSatish Balay #undef __FUNCT__ 13463c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13473c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13483c896bc6SHong Zhang { 13493c896bc6SHong Zhang PetscErrorCode ierr; 13503c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 13513c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 13523c896bc6SHong Zhang 13533c896bc6SHong Zhang PetscFunctionBegin; 13543c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13553c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1356d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13573c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1358d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13593c896bc6SHong Zhang } else { 13603c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13613c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13623c896bc6SHong Zhang } 13633c896bc6SHong Zhang PetscFunctionReturn(0); 13643c896bc6SHong Zhang } 13653c896bc6SHong Zhang 13663c896bc6SHong Zhang #undef __FUNCT__ 13674994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 13684994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1369273d9f13SBarry Smith { 1370dfbe8321SBarry Smith PetscErrorCode ierr; 1371273d9f13SBarry Smith 1372273d9f13SBarry Smith PetscFunctionBegin; 1373535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1374273d9f13SBarry Smith PetscFunctionReturn(0); 1375273d9f13SBarry Smith } 1376a5e6ed63SBarry Smith 13774fe895cdSHong Zhang #undef __FUNCT__ 13784fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13794fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13804fe895cdSHong Zhang { 13814fe895cdSHong Zhang PetscErrorCode ierr; 13824fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 13834fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13844fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13854fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13864fe895cdSHong Zhang 13874fe895cdSHong Zhang PetscFunctionBegin; 13884fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13894fe895cdSHong Zhang PetscScalar alpha = a; 13904fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 13914fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1392c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 13938b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 13944fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 13954fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1396c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 13978b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1398a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 13994fe895cdSHong Zhang } else { 14004de5dceeSHong Zhang Mat B; 14014de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 14024de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1403d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14044de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 14054de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 14064de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 14074de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 14084de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 14094de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 14104de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 14114de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 14124de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 14134de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 14144de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 14154de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 14164de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 14174de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 14184de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1419d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14204de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 14214fe895cdSHong Zhang } 14224fe895cdSHong Zhang PetscFunctionReturn(0); 14234fe895cdSHong Zhang } 14244fe895cdSHong Zhang 1425a5e6ed63SBarry Smith #undef __FUNCT__ 1426a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14271302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1428a5e6ed63SBarry Smith { 14296849ba73SBarry Smith PetscErrorCode ierr; 14301302d50aSBarry Smith PetscInt i; 1431ace3abfcSBarry Smith PetscBool flg; 1432a5e6ed63SBarry Smith 14336849ba73SBarry Smith PetscFunctionBegin; 14344dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1435a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1436a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 14374dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 14384dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1439a5e6ed63SBarry Smith } 14404dcd73b1SHong Zhang } 1441a5e6ed63SBarry Smith PetscFunctionReturn(0); 1442a5e6ed63SBarry Smith } 1443a5e6ed63SBarry Smith 1444a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 14453964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1446a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1447a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1448a9d4b620SHong Zhang MatMult_MPISBAIJ, 144997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1450431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1451431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1452a30f8f8cSSatish Balay 0, 1453a30f8f8cSSatish Balay 0, 1454a30f8f8cSSatish Balay 0, 145597304618SKris Buschelman /* 10*/ 0, 1456a30f8f8cSSatish Balay 0, 1457a30f8f8cSSatish Balay 0, 145841f059aeSBarry Smith MatSOR_MPISBAIJ, 1459a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 146097304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1461a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1462a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1463a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1464a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 146597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1466a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1467a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1468a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1469d519adbfSMatthew Knepley /* 24*/ 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 1472a30f8f8cSSatish Balay 0, 1473a30f8f8cSSatish Balay 0, 14744994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1475b5df2d14SHong Zhang 0, 1476a30f8f8cSSatish Balay 0, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1485a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1486d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1487a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14883c896bc6SHong Zhang MatCopy_MPISBAIJ, 1489d519adbfSMatthew Knepley /* 44*/ 0, 1490a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 1493a30f8f8cSSatish Balay 0, 1494f73d5cc4SBarry Smith /* 49*/ 0, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499d519adbfSMatthew Knepley /* 54*/ 0, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1504d519adbfSMatthew Knepley /* 59*/ 0, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 1507357abbc8SBarry Smith 0, 150824d5174aSHong Zhang 0, 1509d519adbfSMatthew Knepley /* 64*/ 0, 151024d5174aSHong Zhang 0, 151124d5174aSHong Zhang 0, 151224d5174aSHong Zhang 0, 151324d5174aSHong Zhang 0, 1514d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 151524d5174aSHong Zhang 0, 151697304618SKris Buschelman 0, 151797304618SKris Buschelman 0, 151897304618SKris Buschelman 0, 1519d519adbfSMatthew Knepley /* 74*/ 0, 152097304618SKris Buschelman 0, 152197304618SKris Buschelman 0, 152297304618SKris Buschelman 0, 152397304618SKris Buschelman 0, 1524d519adbfSMatthew Knepley /* 79*/ 0, 152597304618SKris Buschelman 0, 152697304618SKris Buschelman 0, 152797304618SKris Buschelman 0, 15285bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1529d519adbfSMatthew Knepley /* 84*/ 0, 1530865e5f61SKris Buschelman 0, 1531865e5f61SKris Buschelman 0, 1532865e5f61SKris Buschelman 0, 1533865e5f61SKris Buschelman 0, 1534d519adbfSMatthew Knepley /* 89*/ 0, 1535865e5f61SKris Buschelman 0, 1536865e5f61SKris Buschelman 0, 1537865e5f61SKris Buschelman 0, 1538865e5f61SKris Buschelman 0, 1539d519adbfSMatthew Knepley /* 94*/ 0, 1540865e5f61SKris Buschelman 0, 1541865e5f61SKris Buschelman 0, 154299cafbc1SBarry Smith 0, 154399cafbc1SBarry Smith 0, 1544d519adbfSMatthew Knepley /* 99*/ 0, 154599cafbc1SBarry Smith 0, 154699cafbc1SBarry Smith 0, 154799cafbc1SBarry Smith 0, 154899cafbc1SBarry Smith 0, 1549d519adbfSMatthew Knepley /*104*/ 0, 155099cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1551d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1552d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 155395936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 155495936485SShri Abhyankar /*109*/ 0, 1555de4b53ebSHong Zhang MatGetRedundantMatrix_MPISBAIJ, 155695936485SShri Abhyankar 0, 155795936485SShri Abhyankar 0, 155895936485SShri Abhyankar 0, 155995936485SShri Abhyankar /*114*/ 0, 156095936485SShri Abhyankar 0, 156195936485SShri Abhyankar 0, 156295936485SShri Abhyankar 0, 156395936485SShri Abhyankar 0, 156495936485SShri Abhyankar /*119*/ 0, 156595936485SShri Abhyankar 0, 156695936485SShri Abhyankar 0, 15673964eb88SJed Brown 0, 15683964eb88SJed Brown 0, 15693964eb88SJed Brown /*124*/ 0, 15703964eb88SJed Brown 0, 15713964eb88SJed Brown 0, 15723964eb88SJed Brown 0, 15733964eb88SJed Brown 0, 15743964eb88SJed Brown /*129*/ 0, 15753964eb88SJed Brown 0, 15763964eb88SJed Brown 0, 15773964eb88SJed Brown 0, 15783964eb88SJed Brown 0, 15793964eb88SJed Brown /*134*/ 0, 15803964eb88SJed Brown 0, 15813964eb88SJed Brown 0, 15823964eb88SJed Brown 0, 15833964eb88SJed Brown 0, 15843964eb88SJed Brown /*139*/ 0, 1585f9426fe0SMark Adams 0, 15865bba2384SShri Abhyankar 0 158799cafbc1SBarry Smith }; 1588a30f8f8cSSatish Balay 1589a30f8f8cSSatish Balay 15904a2ae208SSatish Balay #undef __FUNCT__ 15914a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 159211bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1593a30f8f8cSSatish Balay { 1594a30f8f8cSSatish Balay PetscFunctionBegin; 1595a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1596a30f8f8cSSatish Balay PetscFunctionReturn(0); 1597a30f8f8cSSatish Balay } 1598a30f8f8cSSatish Balay 15994a2ae208SSatish Balay #undef __FUNCT__ 1600a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1601b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1602a23d5eceSKris Buschelman { 1603a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1604dfbe8321SBarry Smith PetscErrorCode ierr; 1605535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1606a23d5eceSKris Buschelman 1607a23d5eceSKris Buschelman PetscFunctionBegin; 160833d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 160926283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 161026283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1611e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1612899cda47SBarry Smith 1613a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1614d0f46423SBarry Smith mbs = B->rmap->n/bs; 1615d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1616c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1617a23d5eceSKris Buschelman 1618d0f46423SBarry Smith B->rmap->bs = bs; 1619a23d5eceSKris Buschelman b->bs2 = bs*bs; 1620a23d5eceSKris Buschelman b->mbs = mbs; 1621a23d5eceSKris Buschelman b->Mbs = Mbs; 1622de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1623de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1624a23d5eceSKris Buschelman 1625a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1626d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1627a23d5eceSKris Buschelman } 1628d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1629d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1630a23d5eceSKris Buschelman 1631d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1632d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1633a23d5eceSKris Buschelman 1634526dfc15SBarry Smith if (!B->preallocated) { 1635f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1636d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16379c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 16383bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1639f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1640d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16414aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 16423bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1643ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1644526dfc15SBarry Smith } 1645a23d5eceSKris Buschelman 1646526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1647526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 164826fbe8dcSKarl Rupp 1649526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1650a23d5eceSKris Buschelman PetscFunctionReturn(0); 1651a23d5eceSKris Buschelman } 1652a23d5eceSKris Buschelman 1653dfb205c3SBarry Smith #undef __FUNCT__ 1654dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1655dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1656dfb205c3SBarry Smith { 1657dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1658dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1659dfb205c3SBarry Smith const PetscInt *JJ =0; 1660dfb205c3SBarry Smith PetscScalar *values=0; 1661dfb205c3SBarry Smith PetscErrorCode ierr; 1662dfb205c3SBarry Smith 1663dfb205c3SBarry Smith PetscFunctionBegin; 1664ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1665dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1666dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1667dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1668dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1669e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1670dfb205c3SBarry Smith m = B->rmap->n/bs; 1671dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1672dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1673dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1674dfb205c3SBarry Smith 1675dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1676dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1677dfb205c3SBarry Smith for (i=0; i<m; i++) { 1678dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1679dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1680dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1681dfb205c3SBarry Smith JJ = jj + ii[i]; 1682dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1683dfb205c3SBarry Smith if (*JJ >= cstart) break; 1684dfb205c3SBarry Smith JJ++; 1685dfb205c3SBarry Smith } 1686dfb205c3SBarry Smith d = 0; 1687dfb205c3SBarry Smith for (; j<nz; j++) { 1688dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1689dfb205c3SBarry Smith d++; 1690dfb205c3SBarry Smith } 1691dfb205c3SBarry Smith d_nnz[i] = d; 1692dfb205c3SBarry Smith o_nnz[i] = nz - d; 1693dfb205c3SBarry Smith } 1694dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1695dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1696dfb205c3SBarry Smith 1697dfb205c3SBarry Smith values = (PetscScalar*)V; 1698dfb205c3SBarry Smith if (!values) { 1699785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1700dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1701dfb205c3SBarry Smith } 1702dfb205c3SBarry Smith for (i=0; i<m; i++) { 1703dfb205c3SBarry Smith PetscInt row = i + rstart; 1704dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1705dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1706dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1707dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1708dfb205c3SBarry Smith } 1709dfb205c3SBarry Smith 1710dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1711dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1712dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17137827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1714dfb205c3SBarry Smith PetscFunctionReturn(0); 1715dfb205c3SBarry Smith } 1716dfb205c3SBarry Smith 1717611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 17188cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1719611f576cSBarry Smith #endif 1720b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 17218cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1722b5e56a35SBarry Smith #endif 17235c9eb25fSBarry Smith 17240bad9183SKris Buschelman /*MC 1725fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1726828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1727828413b8SBarry Smith the matrix is stored. 1728828413b8SBarry Smith 1729828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1730828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17310bad9183SKris Buschelman 17320bad9183SKris Buschelman Options Database Keys: 17330bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17340bad9183SKris Buschelman 17350bad9183SKris Buschelman Level: beginner 17360bad9183SKris Buschelman 17370bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17380bad9183SKris Buschelman M*/ 17390bad9183SKris Buschelman 17408cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1741aa5a9175SDahai Guo 1742a23d5eceSKris Buschelman #undef __FUNCT__ 17434a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17448cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1745b5df2d14SHong Zhang { 1746b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1747dfbe8321SBarry Smith PetscErrorCode ierr; 1748ace3abfcSBarry Smith PetscBool flg; 1749b5df2d14SHong Zhang 1750b5df2d14SHong Zhang PetscFunctionBegin; 1751b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1752b0a32e0cSBarry Smith B->data = (void*)b; 1753b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1754b5df2d14SHong Zhang 1755b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1756b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1757b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1758b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 175926fbe8dcSKarl Rupp 1760ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1761ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1762b5df2d14SHong Zhang 1763b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1764785e854fSJed Brown ierr = PetscMalloc1((b->size+2),&b->rangebs);CHKERRQ(ierr); 1765b5df2d14SHong Zhang 1766b5df2d14SHong Zhang /* build cache for off array entries formed */ 1767ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 176826fbe8dcSKarl Rupp 1769b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 17700298fd71SBarry Smith b->colmap = NULL; 17710298fd71SBarry Smith b->garray = NULL; 1772b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1773b5df2d14SHong Zhang 1774b5df2d14SHong Zhang /* stuff used in block assembly */ 1775b5df2d14SHong Zhang b->barray = 0; 1776b5df2d14SHong Zhang 1777b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1778b5df2d14SHong Zhang b->lvec = 0; 1779b5df2d14SHong Zhang b->Mvctx = 0; 178040781036SHong Zhang b->slvec0 = 0; 178140781036SHong Zhang b->slvec0b = 0; 178240781036SHong Zhang b->slvec1 = 0; 178340781036SHong Zhang b->slvec1a = 0; 178440781036SHong Zhang b->slvec1b = 0; 178540781036SHong Zhang b->sMvctx = 0; 1786b5df2d14SHong Zhang 1787b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1788b5df2d14SHong Zhang b->rowindices = 0; 1789b5df2d14SHong Zhang b->rowvalues = 0; 1790b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1791b5df2d14SHong Zhang 1792b5df2d14SHong Zhang /* hash table stuff */ 1793b5df2d14SHong Zhang b->ht = 0; 1794b5df2d14SHong Zhang b->hd = 0; 1795b5df2d14SHong Zhang b->ht_size = 0; 1796b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1797b5df2d14SHong Zhang b->ht_fact = 0; 1798b5df2d14SHong Zhang b->ht_total_ct = 0; 1799b5df2d14SHong Zhang b->ht_insert_ct = 0; 1800b5df2d14SHong Zhang 18017a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 18027a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 18037a868f3eSHong Zhang 180459ffdab8SBarry Smith b->in_loc = 0; 180559ffdab8SBarry Smith b->v_loc = 0; 180659ffdab8SBarry Smith b->n_loc = 0; 1807ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 18080298fd71SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr); 1809b5df2d14SHong Zhang if (flg) { 1810f6275e2eSBarry Smith PetscReal fact = 1.39; 18114e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 18120298fd71SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 1813b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1814b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 18151e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1816b5df2d14SHong Zhang } 18178c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 18188c07d4e3SBarry Smith 1819b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1820bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1821b5e56a35SBarry Smith #endif 1822611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1823bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1824611f576cSBarry Smith #endif 1825bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1826bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1827bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1828bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1829bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1830bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1831aa5a9175SDahai Guo 183223ce1328SBarry Smith B->symmetric = PETSC_TRUE; 183323ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 183423ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 183523ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 183626fbe8dcSKarl Rupp 183717667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1838b5df2d14SHong Zhang PetscFunctionReturn(0); 1839b5df2d14SHong Zhang } 1840b5df2d14SHong Zhang 1841209238afSKris Buschelman /*MC 1842002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1843209238afSKris Buschelman 1844209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1845209238afSKris Buschelman and MATMPISBAIJ otherwise. 1846209238afSKris Buschelman 1847209238afSKris Buschelman Options Database Keys: 1848209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1849209238afSKris Buschelman 1850209238afSKris Buschelman Level: beginner 1851209238afSKris Buschelman 1852209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1853209238afSKris Buschelman M*/ 1854209238afSKris Buschelman 18554a2ae208SSatish Balay #undef __FUNCT__ 18564a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1857b5df2d14SHong Zhang /*@C 1858b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1859b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1860b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1861b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1862b5df2d14SHong Zhang 1863b5df2d14SHong Zhang Collective on Mat 1864b5df2d14SHong Zhang 1865b5df2d14SHong Zhang Input Parameters: 18661c4f3114SJed Brown + B - the matrix 1867bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1868bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1869b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1870b5df2d14SHong Zhang submatrix (same for all local rows) 1871b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18726d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18730298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 187495742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1875b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1876b5df2d14SHong Zhang submatrix (same for all local rows). 1877b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1878c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 18790298fd71SBarry Smith (possibly different for each block row) or NULL. 1880b5df2d14SHong Zhang 1881b5df2d14SHong Zhang 1882b5df2d14SHong Zhang Options Database Keys: 1883b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1884b5df2d14SHong Zhang block calculations (much slower) 1885b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1886b5df2d14SHong Zhang 1887b5df2d14SHong Zhang Notes: 1888b5df2d14SHong Zhang 1889b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1890b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1891b5df2d14SHong Zhang 189249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 189349a6f317SBarry Smith 1894b5df2d14SHong Zhang Storage Information: 1895b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1896b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1897b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1898b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1899b5df2d14SHong Zhang 1900b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1901b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 19020298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1903b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1904b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1905b5df2d14SHong Zhang 1906aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1907aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1908aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1909aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1910aa95bbe8SBarry Smith 1911b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1912b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1913b5df2d14SHong Zhang 1914b5df2d14SHong Zhang .vb 1915b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1916a4b1a0f6SJed Brown -------------------------- 1917c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 1918c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 1919c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 1920a4b1a0f6SJed Brown -------------------------- 1921b5df2d14SHong Zhang .ve 1922b5df2d14SHong Zhang 1923b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1924b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19256d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19266d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1927b5df2d14SHong Zhang 19286d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19296d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1930c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1931c2fc9fa9SBarry Smith 1932b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1933b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1934b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1935b5df2d14SHong Zhang matrices. 1936b5df2d14SHong Zhang 1937b5df2d14SHong Zhang Level: intermediate 1938b5df2d14SHong Zhang 1939b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1940b5df2d14SHong Zhang 1941ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 1942b5df2d14SHong Zhang @*/ 19437087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1944b5df2d14SHong Zhang { 19454ac538c5SBarry Smith PetscErrorCode ierr; 1946b5df2d14SHong Zhang 1947b5df2d14SHong Zhang PetscFunctionBegin; 19486ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19496ba663aaSJed Brown PetscValidType(B,1); 19506ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19514ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1952b5df2d14SHong Zhang PetscFunctionReturn(0); 1953b5df2d14SHong Zhang } 1954b5df2d14SHong Zhang 19554a2ae208SSatish Balay #undef __FUNCT__ 195669b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 1957a30f8f8cSSatish Balay /*@C 195869b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1959a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1960a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1961a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1962a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1963a30f8f8cSSatish Balay 1964a30f8f8cSSatish Balay Collective on MPI_Comm 1965a30f8f8cSSatish Balay 1966a30f8f8cSSatish Balay Input Parameters: 1967a30f8f8cSSatish Balay + comm - MPI communicator 1968bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1969bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1970a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1971a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1972a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1973a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1974a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1975a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1976a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1977a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1978a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1979a30f8f8cSSatish Balay submatrix (same for all local rows) 1980a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19816d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19820298fd71SBarry Smith (possibly different for each block block row) or NULL. 198395742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 198495742e49SBarry Smith set its value even if it is zero. 1985a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1986a30f8f8cSSatish Balay submatrix (same for all local rows). 1987a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1988a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 19890298fd71SBarry Smith each block row) or NULL. 1990a30f8f8cSSatish Balay 1991a30f8f8cSSatish Balay Output Parameter: 1992a30f8f8cSSatish Balay . A - the matrix 1993a30f8f8cSSatish Balay 1994a30f8f8cSSatish Balay Options Database Keys: 1995a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1996a30f8f8cSSatish Balay block calculations (much slower) 1997a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1998a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1999a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2000a30f8f8cSSatish Balay 2001175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2002ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2003175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2004175b88e8SBarry Smith 2005a30f8f8cSSatish Balay Notes: 2006d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20076d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2008d1be2dadSMatthew Knepley 2009a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2010a30f8f8cSSatish Balay (possibly both). 2011a30f8f8cSSatish Balay 2012a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2013a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2014a30f8f8cSSatish Balay 201549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 201649a6f317SBarry Smith 2017a30f8f8cSSatish Balay Storage Information: 2018a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2019a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2020a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2021a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2022a30f8f8cSSatish Balay 2023a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2024a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 20250298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2026a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2027a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2028a30f8f8cSSatish Balay 2029a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2030a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2031a30f8f8cSSatish Balay 2032a30f8f8cSSatish Balay .vb 2033a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2034a4b1a0f6SJed Brown -------------------------- 2035c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2036c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2037c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2038a4b1a0f6SJed Brown -------------------------- 2039a30f8f8cSSatish Balay .ve 2040a30f8f8cSSatish Balay 2041a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2042a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20436d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20446d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2045a30f8f8cSSatish Balay 20466d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20476d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2048a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2049a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2050a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2051a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2052a30f8f8cSSatish Balay matrices. 2053a30f8f8cSSatish Balay 2054a30f8f8cSSatish Balay Level: intermediate 2055a30f8f8cSSatish Balay 2056a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2057a30f8f8cSSatish Balay 205869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2059a30f8f8cSSatish Balay @*/ 2060a30f8f8cSSatish Balay 206169b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2062a30f8f8cSSatish Balay { 20636849ba73SBarry Smith PetscErrorCode ierr; 20641302d50aSBarry Smith PetscMPIInt size; 2065a30f8f8cSSatish Balay 2066a30f8f8cSSatish Balay PetscFunctionBegin; 2067f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2068f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2069273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2070273d9f13SBarry Smith if (size > 1) { 2071b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2072b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2073273d9f13SBarry Smith } else { 2074273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2075273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2076273d9f13SBarry Smith } 2077a30f8f8cSSatish Balay PetscFunctionReturn(0); 2078a30f8f8cSSatish Balay } 2079a30f8f8cSSatish Balay 2080a30f8f8cSSatish Balay 20814a2ae208SSatish Balay #undef __FUNCT__ 20824a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20836849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2084a30f8f8cSSatish Balay { 2085a30f8f8cSSatish Balay Mat mat; 2086a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2087dfbe8321SBarry Smith PetscErrorCode ierr; 2088d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2089387bc808SHong Zhang PetscScalar *array; 2090a30f8f8cSSatish Balay 2091a30f8f8cSSatish Balay PetscFunctionBegin; 2092a30f8f8cSSatish Balay *newmat = 0; 209326fbe8dcSKarl Rupp 2094ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2095d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20967adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20971d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 20981e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 20991e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2100e1b6402fSHong Zhang 2101d5f3da31SBarry Smith mat->factortype = matin->factortype; 2102273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 210382327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21047fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21057fff6886SHong Zhang 2106b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2107a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2108a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2109a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2110a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2111a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2112a30f8f8cSSatish Balay 2113899cda47SBarry Smith 2114a30f8f8cSSatish Balay a->size = oldmat->size; 2115a30f8f8cSSatish Balay a->rank = oldmat->rank; 2116a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2117a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2118a30f8f8cSSatish Balay a->rowindices = 0; 2119a30f8f8cSSatish Balay a->rowvalues = 0; 2120a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2121a30f8f8cSSatish Balay a->barray = 0; 2122899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2123899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2124899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2125899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2126a30f8f8cSSatish Balay 2127a30f8f8cSSatish Balay /* hash table stuff */ 2128a30f8f8cSSatish Balay a->ht = 0; 2129a30f8f8cSSatish Balay a->hd = 0; 2130a30f8f8cSSatish Balay a->ht_size = 0; 2131a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2132a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2133a30f8f8cSSatish Balay a->ht_total_ct = 0; 2134a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2135a30f8f8cSSatish Balay 2136899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2137a30f8f8cSSatish Balay if (oldmat->colmap) { 2138a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2139a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2140a30f8f8cSSatish Balay #else 2141785e854fSJed Brown ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr); 21423bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21431302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2144a30f8f8cSSatish Balay #endif 2145a30f8f8cSSatish Balay } else a->colmap = 0; 2146387bc808SHong Zhang 2147a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2148785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 21493bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21501302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2151a30f8f8cSSatish Balay } else a->garray = 0; 2152a30f8f8cSSatish Balay 2153ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 21553bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 21573bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 215882327fa8SHong Zhang 215982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 21603bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 216182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 21623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2163387bc808SHong Zhang 2164387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21651ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2166778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2167778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21681ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21691ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2170778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21711ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 21723bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 21733bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 21743bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 21753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 21763bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2177387bc808SHong Zhang 2178387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2179387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2180387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 21813bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 218282327fa8SHong Zhang 2183a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 21843bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 21863bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2187140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2188a30f8f8cSSatish Balay *newmat = mat; 2189a30f8f8cSSatish Balay PetscFunctionReturn(0); 2190a30f8f8cSSatish Balay } 2191a30f8f8cSSatish Balay 21924a2ae208SSatish Balay #undef __FUNCT__ 21935bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2194112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 219595936485SShri Abhyankar { 219695936485SShri Abhyankar PetscErrorCode ierr; 219795936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 219895936485SShri Abhyankar PetscScalar *vals,*buf; 2199ce94432eSBarry Smith MPI_Comm comm; 220095936485SShri Abhyankar MPI_Status status; 2201adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2202adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 220395936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 220495936485SShri Abhyankar PetscInt bs =1,Mbs,mbs,extra_rows; 220595936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 220695936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 220795936485SShri Abhyankar int fd; 220895936485SShri Abhyankar 220995936485SShri Abhyankar PetscFunctionBegin; 2210ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 22110298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 22120298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 221395936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 221495936485SShri Abhyankar 221595936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 221695936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 221795936485SShri Abhyankar if (!rank) { 221895936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 221995936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 222095936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 222195936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 222295936485SShri Abhyankar } 222395936485SShri Abhyankar 222495936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 222595936485SShri Abhyankar 222695936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 222726fbe8dcSKarl Rupp M = header[1]; 222826fbe8dcSKarl Rupp N = header[2]; 222995936485SShri Abhyankar 223095936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 223195936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 223295936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 223395936485SShri Abhyankar 223495936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 223595936485SShri Abhyankar if (sizesset) { 223695936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 223795936485SShri Abhyankar } 2238abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2239abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 224095936485SShri Abhyankar 224195936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 224295936485SShri Abhyankar 224395936485SShri Abhyankar /* 224495936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 224595936485SShri Abhyankar divisible by the blocksize 224695936485SShri Abhyankar */ 224795936485SShri Abhyankar Mbs = M/bs; 224895936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 224995936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 225095936485SShri Abhyankar else Mbs++; 225195936485SShri Abhyankar if (extra_rows &&!rank) { 225295936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 225395936485SShri Abhyankar } 225495936485SShri Abhyankar 225595936485SShri Abhyankar /* determine ownership of all rows */ 225695936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 225795936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 225895936485SShri Abhyankar m = mbs*bs; 225995936485SShri Abhyankar } else { /* User Set */ 226095936485SShri Abhyankar m = newmat->rmap->n; 226195936485SShri Abhyankar mbs = m/bs; 226295936485SShri Abhyankar } 2263dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 22644dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 226595936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 226695936485SShri Abhyankar rowners[0] = 0; 226795936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 226895936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 226995936485SShri Abhyankar rstart = rowners[rank]; 227095936485SShri Abhyankar rend = rowners[rank+1]; 227195936485SShri Abhyankar 227295936485SShri Abhyankar /* distribute row lengths to all processors */ 2273785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 227495936485SShri Abhyankar if (!rank) { 2275785e854fSJed Brown ierr = PetscMalloc1((M+extra_rows),&rowlengths);CHKERRQ(ierr); 227695936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 227795936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2278785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 227995936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 228095936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 228195936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 228295936485SShri Abhyankar } else { 228395936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 228495936485SShri Abhyankar } 228595936485SShri Abhyankar 228695936485SShri Abhyankar if (!rank) { /* procs[0] */ 228795936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2288785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 228995936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 229095936485SShri Abhyankar for (i=0; i<size; i++) { 229195936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 229295936485SShri Abhyankar procsnz[i] += rowlengths[j]; 229395936485SShri Abhyankar } 229495936485SShri Abhyankar } 229595936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 229695936485SShri Abhyankar 229795936485SShri Abhyankar /* determine max buffer needed and allocate it */ 229895936485SShri Abhyankar maxnz = 0; 229995936485SShri Abhyankar for (i=0; i<size; i++) { 230095936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 230195936485SShri Abhyankar } 2302785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 230395936485SShri Abhyankar 230495936485SShri Abhyankar /* read in my part of the matrix column indices */ 230595936485SShri Abhyankar nz = procsnz[0]; 2306785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 230795936485SShri Abhyankar mycols = ibuf; 230895936485SShri Abhyankar if (size == 1) nz -= extra_rows; 230995936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 231026fbe8dcSKarl Rupp if (size == 1) { 231126fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 231226fbe8dcSKarl Rupp } 231395936485SShri Abhyankar 231495936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 231595936485SShri Abhyankar for (i=1; i<size-1; i++) { 231695936485SShri Abhyankar nz = procsnz[i]; 231795936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 231895936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 231995936485SShri Abhyankar } 232095936485SShri Abhyankar /* read in the stuff for the last proc */ 232195936485SShri Abhyankar if (size != 1) { 232295936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 232395936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 232495936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 232595936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 232695936485SShri Abhyankar } 232795936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 232895936485SShri Abhyankar } else { /* procs[i], i>0 */ 232995936485SShri Abhyankar /* determine buffer space needed for message */ 233095936485SShri Abhyankar nz = 0; 233126fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2332785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 233395936485SShri Abhyankar mycols = ibuf; 233495936485SShri Abhyankar /* receive message of column indices*/ 233595936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 233695936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 233795936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 233895936485SShri Abhyankar } 233995936485SShri Abhyankar 234095936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2341dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2342dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 234395936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 234495936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 234595936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 234695936485SShri Abhyankar rowcount = 0; 234795936485SShri Abhyankar nzcount = 0; 234895936485SShri Abhyankar for (i=0; i<mbs; i++) { 234995936485SShri Abhyankar dcount = 0; 235095936485SShri Abhyankar odcount = 0; 235195936485SShri Abhyankar for (j=0; j<bs; j++) { 235295936485SShri Abhyankar kmax = locrowlens[rowcount]; 235395936485SShri Abhyankar for (k=0; k<kmax; k++) { 235495936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 235595936485SShri Abhyankar if (!mask[tmp]) { 235695936485SShri Abhyankar mask[tmp] = 1; 235795936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 235895936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 235995936485SShri Abhyankar } 236095936485SShri Abhyankar } 236195936485SShri Abhyankar rowcount++; 236295936485SShri Abhyankar } 236395936485SShri Abhyankar 236495936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 236595936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 236695936485SShri Abhyankar 236795936485SShri Abhyankar /* zero out the mask elements we set */ 236895936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 236995936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 237095936485SShri Abhyankar } 237195936485SShri Abhyankar if (!sizesset) { 237295936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 237395936485SShri Abhyankar } 237495936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 23756816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 237695936485SShri Abhyankar 237795936485SShri Abhyankar if (!rank) { 2378785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 237995936485SShri Abhyankar /* read in my part of the matrix numerical values */ 238095936485SShri Abhyankar nz = procsnz[0]; 238195936485SShri Abhyankar vals = buf; 238295936485SShri Abhyankar mycols = ibuf; 238395936485SShri Abhyankar if (size == 1) nz -= extra_rows; 238495936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238526fbe8dcSKarl Rupp if (size == 1) { 238626fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 238726fbe8dcSKarl Rupp } 238895936485SShri Abhyankar 238995936485SShri Abhyankar /* insert into matrix */ 239095936485SShri Abhyankar jj = rstart*bs; 239195936485SShri Abhyankar for (i=0; i<m; i++) { 239295936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 239395936485SShri Abhyankar mycols += locrowlens[i]; 239495936485SShri Abhyankar vals += locrowlens[i]; 239595936485SShri Abhyankar jj++; 239695936485SShri Abhyankar } 239795936485SShri Abhyankar 239895936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 239995936485SShri Abhyankar for (i=1; i<size-1; i++) { 240095936485SShri Abhyankar nz = procsnz[i]; 240195936485SShri Abhyankar vals = buf; 240295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 240395936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 240495936485SShri Abhyankar } 240595936485SShri Abhyankar /* the last proc */ 240695936485SShri Abhyankar if (size != 1) { 240795936485SShri Abhyankar nz = procsnz[i] - extra_rows; 240895936485SShri Abhyankar vals = buf; 240995936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 241095936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 241195936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 241295936485SShri Abhyankar } 241395936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 241495936485SShri Abhyankar 241595936485SShri Abhyankar } else { 241695936485SShri Abhyankar /* receive numeric values */ 2417785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 241895936485SShri Abhyankar 241995936485SShri Abhyankar /* receive message of values*/ 242095936485SShri Abhyankar vals = buf; 242195936485SShri Abhyankar mycols = ibuf; 242295936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 242395936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 242495936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 242595936485SShri Abhyankar 242695936485SShri Abhyankar /* insert into matrix */ 242795936485SShri Abhyankar jj = rstart*bs; 242895936485SShri Abhyankar for (i=0; i<m; i++) { 242995936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 243095936485SShri Abhyankar mycols += locrowlens[i]; 243195936485SShri Abhyankar vals += locrowlens[i]; 243295936485SShri Abhyankar jj++; 243395936485SShri Abhyankar } 243495936485SShri Abhyankar } 243595936485SShri Abhyankar 243695936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 243795936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 243895936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 243995936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 244095936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 244195936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 244295936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 244395936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 244495936485SShri Abhyankar PetscFunctionReturn(0); 244595936485SShri Abhyankar } 244695936485SShri Abhyankar 244795936485SShri Abhyankar #undef __FUNCT__ 24484a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2449dcf5cc72SBarry Smith /*XXXXX@ 2450a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2451a30f8f8cSSatish Balay 2452a30f8f8cSSatish Balay Input Parameters: 2453a30f8f8cSSatish Balay . mat - the matrix 2454a30f8f8cSSatish Balay . fact - factor 2455a30f8f8cSSatish Balay 2456c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2457a30f8f8cSSatish Balay 2458a30f8f8cSSatish Balay Level: advanced 2459a30f8f8cSSatish Balay 2460a30f8f8cSSatish Balay Notes: 2461a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2462a30f8f8cSSatish Balay 2463a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2464a30f8f8cSSatish Balay 2465a30f8f8cSSatish Balay .seealso: MatSetOption() 2466dcf5cc72SBarry Smith @XXXXX*/ 2467dcf5cc72SBarry Smith 246824d5174aSHong Zhang 24694a2ae208SSatish Balay #undef __FUNCT__ 2470985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2471985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 247224d5174aSHong Zhang { 247324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2474f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2475ca54ac64SHong Zhang PetscReal atmp; 247687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2477dfbe8321SBarry Smith PetscErrorCode ierr; 24781302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24791302d50aSBarry Smith PetscMPIInt rank,size; 24801302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 248187828ca2SBarry Smith PetscScalar *va; 24828a1c53f2SBarry Smith MatScalar *ba; 2483f4c0e9e4SHong Zhang MPI_Status stat; 248424d5174aSHong Zhang 248524d5174aSHong Zhang PetscFunctionBegin; 2486e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 24870298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 24881ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2489f4c0e9e4SHong Zhang 2490ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2491ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2492f4c0e9e4SHong Zhang 2493d0f46423SBarry Smith bs = A->rmap->bs; 2494f4c0e9e4SHong Zhang mbs = a->mbs; 2495f4c0e9e4SHong Zhang Mbs = a->Mbs; 2496f4c0e9e4SHong Zhang ba = b->a; 2497f4c0e9e4SHong Zhang bi = b->i; 2498f4c0e9e4SHong Zhang bj = b->j; 2499f4c0e9e4SHong Zhang 2500f4c0e9e4SHong Zhang /* find ownerships */ 2501d0f46423SBarry Smith rowners_bs = A->rmap->range; 2502f4c0e9e4SHong Zhang 2503f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2504785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2505ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2506f4c0e9e4SHong Zhang 2507f4c0e9e4SHong Zhang /* row_max for B */ 2508b8475685SHong Zhang if (rank != size-1) { 2509f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2510f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2511f4c0e9e4SHong Zhang brow = bs*i; 2512f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2513f4c0e9e4SHong Zhang bcol = bs*(*bj); 2514f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2515ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 251604d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2517f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2518f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2519ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2520ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2521f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2522f4c0e9e4SHong Zhang } 2523f4c0e9e4SHong Zhang } 2524f4c0e9e4SHong Zhang bj++; 2525f4c0e9e4SHong Zhang } 2526f4c0e9e4SHong Zhang } 2527f4c0e9e4SHong Zhang 2528f4c0e9e4SHong Zhang /* send values to its owners */ 2529f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2530f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2531ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2532ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2533ca54ac64SHong Zhang } 2534f4c0e9e4SHong Zhang } 2535f4c0e9e4SHong Zhang 2536f4c0e9e4SHong Zhang /* receive values */ 2537ca54ac64SHong Zhang if (rank) { 2538f4c0e9e4SHong Zhang rvalues = work; 2539ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2540f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2541ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2542f4c0e9e4SHong Zhang /* process values */ 2543f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2544ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2545f4c0e9e4SHong Zhang } 2546f4c0e9e4SHong Zhang } 2547ca54ac64SHong Zhang } 2548f4c0e9e4SHong Zhang 25491ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2550ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 255124d5174aSHong Zhang PetscFunctionReturn(0); 255224d5174aSHong Zhang } 25532798e883SHong Zhang 25542798e883SHong Zhang #undef __FUNCT__ 255541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 255641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25572798e883SHong Zhang { 25582798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2559dfbe8321SBarry Smith PetscErrorCode ierr; 2560d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25613649974fSBarry Smith PetscScalar *x,*ptr,*from; 2562ffe4fb16SHong Zhang Vec bb1; 25633649974fSBarry Smith const PetscScalar *b; 2564ffe4fb16SHong Zhang 2565ffe4fb16SHong Zhang PetscFunctionBegin; 2566e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2567e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2568ffe4fb16SHong Zhang 2569a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 257041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2571a2b30743SBarry Smith PetscFunctionReturn(0); 2572a2b30743SBarry Smith } 2573a2b30743SBarry Smith 2574ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2575ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 257641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2577ffe4fb16SHong Zhang its--; 2578ffe4fb16SHong Zhang } 2579ffe4fb16SHong Zhang 2580ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2581ffe4fb16SHong Zhang while (its--) { 2582ffe4fb16SHong Zhang 2583ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2584ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2585ffe4fb16SHong Zhang 2586ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25871ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25881ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2589ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25901ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2591ffe4fb16SHong Zhang 2592efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2593ffe4fb16SHong Zhang 2594ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25951ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25963649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2597ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25981ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2599ffe4fb16SHong Zhang 2600ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2601fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2602ffe4fb16SHong Zhang 2603ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26041ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2605a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2606ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2607ffe4fb16SHong Zhang 2608ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2609ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2610ffe4fb16SHong Zhang 2611ffe4fb16SHong Zhang /* local diagonal sweep */ 261241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2613ffe4fb16SHong Zhang } 26146bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2615fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 261641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2617fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 261841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2619fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2620fa22f6d0SBarry Smith Vec xx1; 2621ace3abfcSBarry Smith PetscBool hasop; 262220f1ed55SBarry Smith const PetscScalar *diag; 2623887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 262420f1ed55SBarry Smith PetscInt i,n; 2625fa22f6d0SBarry Smith 2626fa22f6d0SBarry Smith if (!mat->xx1) { 2627fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2628fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2629fa22f6d0SBarry Smith } 2630fa22f6d0SBarry Smith xx1 = mat->xx1; 2631fa22f6d0SBarry Smith bb1 = mat->bb1; 2632fa22f6d0SBarry Smith 263341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2634fa22f6d0SBarry Smith 2635fa22f6d0SBarry Smith if (!mat->diag) { 2636effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26372a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2638fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2639fa22f6d0SBarry Smith } 2640fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2641fa22f6d0SBarry Smith 2642fa22f6d0SBarry Smith if (hasop) { 2643fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2644887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 264520f1ed55SBarry Smith } else { 264620f1ed55SBarry Smith /* 264720f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 264820f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2649887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 265020f1ed55SBarry Smith */ 265120f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26523649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26533649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 265420f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 265520f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2656887ee2caSBarry Smith if (omega == 1.0) { 265726fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 265820f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2659887ee2caSBarry Smith } else { 266026fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2661887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2662887ee2caSBarry Smith } 266320f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26643649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26653649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 266620f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 266720f1ed55SBarry Smith } 2668fa22f6d0SBarry Smith 2669fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2670fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2671fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2672fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2673fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2674fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2675fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2676fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2677fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2678fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2679effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2680fa22f6d0SBarry Smith 2681fa22f6d0SBarry Smith /* local sweep */ 268241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2683fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2684f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2685ffe4fb16SHong Zhang PetscFunctionReturn(0); 2686ffe4fb16SHong Zhang } 2687ffe4fb16SHong Zhang 2688ffe4fb16SHong Zhang #undef __FUNCT__ 268941f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 269041f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2691ffe4fb16SHong Zhang { 2692ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2693dfbe8321SBarry Smith PetscErrorCode ierr; 26942798e883SHong Zhang Vec lvec1,bb1; 26952798e883SHong Zhang 26962798e883SHong Zhang PetscFunctionBegin; 2697e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2698e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26992798e883SHong Zhang 2700c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 27012798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 270241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27032798e883SHong Zhang its--; 27042798e883SHong Zhang } 27052798e883SHong Zhang 27062798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27072798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27082798e883SHong Zhang while (its--) { 2709ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27102798e883SHong Zhang 27112798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27122798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2713efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27142798e883SHong Zhang 2715ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27162798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2717ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27182798e883SHong Zhang 27192798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2720efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 27212798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27222798e883SHong Zhang 2723ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27242798e883SHong Zhang 2725c14dc6b6SHong Zhang /* diagonal sweep */ 272641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27272798e883SHong Zhang } 27286bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27296bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27306bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27312798e883SHong Zhang PetscFunctionReturn(0); 27322798e883SHong Zhang } 27332798e883SHong Zhang 2734dfb205c3SBarry Smith #undef __FUNCT__ 2735dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2736dfb205c3SBarry Smith /*@ 2737dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2738dfb205c3SBarry Smith CSR format the local rows. 2739dfb205c3SBarry Smith 2740dfb205c3SBarry Smith Collective on MPI_Comm 2741dfb205c3SBarry Smith 2742dfb205c3SBarry Smith Input Parameters: 2743dfb205c3SBarry Smith + comm - MPI communicator 2744dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2745dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2746dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2747dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2748dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2749dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2750dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2751dfb205c3SBarry Smith . i - row indices 2752dfb205c3SBarry Smith . j - column indices 2753dfb205c3SBarry Smith - a - matrix values 2754dfb205c3SBarry Smith 2755dfb205c3SBarry Smith Output Parameter: 2756dfb205c3SBarry Smith . mat - the matrix 2757dfb205c3SBarry Smith 2758dfb205c3SBarry Smith Level: intermediate 2759dfb205c3SBarry Smith 2760dfb205c3SBarry Smith Notes: 2761dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2762dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2763dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2764dfb205c3SBarry Smith 2765dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2766dfb205c3SBarry Smith 2767dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2768dfb205c3SBarry Smith 2769dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 277069b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2771dfb205c3SBarry Smith @*/ 27727087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2773dfb205c3SBarry Smith { 2774dfb205c3SBarry Smith PetscErrorCode ierr; 2775dfb205c3SBarry Smith 2776dfb205c3SBarry Smith 2777dfb205c3SBarry Smith PetscFunctionBegin; 2778f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2779dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2780dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2781dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2782dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2783dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2784dfb205c3SBarry Smith PetscFunctionReturn(0); 2785dfb205c3SBarry Smith } 2786dfb205c3SBarry Smith 2787dfb205c3SBarry Smith 2788dfb205c3SBarry Smith #undef __FUNCT__ 2789dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2790dfb205c3SBarry Smith /*@C 2791dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2792dfb205c3SBarry Smith (the default parallel PETSc format). 2793dfb205c3SBarry Smith 2794dfb205c3SBarry Smith Collective on MPI_Comm 2795dfb205c3SBarry Smith 2796dfb205c3SBarry Smith Input Parameters: 27971c4f3114SJed Brown + B - the matrix 2798dfb205c3SBarry Smith . bs - the block size 2799dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2800dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2801dfb205c3SBarry Smith - v - optional values in the matrix 2802dfb205c3SBarry Smith 2803dfb205c3SBarry Smith Level: developer 2804dfb205c3SBarry Smith 2805dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2806dfb205c3SBarry Smith 280769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2808dfb205c3SBarry Smith @*/ 28097087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2810dfb205c3SBarry Smith { 28114ac538c5SBarry Smith PetscErrorCode ierr; 2812dfb205c3SBarry Smith 2813dfb205c3SBarry Smith PetscFunctionBegin; 28144ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2815dfb205c3SBarry Smith PetscFunctionReturn(0); 2816dfb205c3SBarry Smith } 2817dfb205c3SBarry Smith 2818de4b53ebSHong Zhang #undef __FUNCT__ 28194dcd73b1SHong Zhang #define __FUNCT__ "MatCreateMPISBAIJConcatenateSeqSBAIJSymbolic" 28204dcd73b1SHong Zhang PetscErrorCode MatCreateMPISBAIJConcatenateSeqSBAIJSymbolic(MPI_Comm comm,Mat inmat,PetscInt n,Mat *outmat) 28214dcd73b1SHong Zhang { 28224dcd73b1SHong Zhang PetscErrorCode ierr; 28234dcd73b1SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 28244dcd73b1SHong Zhang PetscInt m,N,i,rstart,nnz,*dnz,*onz,sum,bs,cbs; 28254dcd73b1SHong Zhang PetscInt *indx,*bindx,rmax=a->rmax,j; 28264dcd73b1SHong Zhang 28274dcd73b1SHong Zhang PetscFunctionBegin; 28284dcd73b1SHong Zhang /* This routine will ONLY return MPISBAIJ type matrix */ 28294dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 28304dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 28314dcd73b1SHong Zhang m = m/bs; N = N/cbs; 28324dcd73b1SHong Zhang if (n == PETSC_DECIDE) { 28334dcd73b1SHong Zhang ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 28344dcd73b1SHong Zhang } 28354dcd73b1SHong Zhang /* Check sum(n) = N */ 28364dcd73b1SHong Zhang ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 28374dcd73b1SHong Zhang if (sum != N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",N); 28384dcd73b1SHong Zhang 28394dcd73b1SHong Zhang ierr = MPI_Scan(&m, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 28404dcd73b1SHong Zhang rstart -= m; 28414dcd73b1SHong Zhang 28424dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 28434dcd73b1SHong Zhang ierr = MatPreallocateInitialize(comm,m,n,dnz,onz);CHKERRQ(ierr); 2844e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 28454dcd73b1SHong Zhang for (i=0; i<m; i++) { 28464dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 28474dcd73b1SHong Zhang nnz = nnz/bs; 28484dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 28494dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 28504dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 28514dcd73b1SHong Zhang } 2852e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 28534dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 28544dcd73b1SHong Zhang 28554dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 28564dcd73b1SHong Zhang ierr = MatSetSizes(*outmat,m*bs,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 28574dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 28584dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 28594dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 28604dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 28614dcd73b1SHong Zhang PetscFunctionReturn(0); 28624dcd73b1SHong Zhang } 28634dcd73b1SHong Zhang 28644dcd73b1SHong Zhang #undef __FUNCT__ 28654dcd73b1SHong Zhang #define __FUNCT__ "MatCreateMPISBAIJConcatenateSeqSBAIJNumeric" 28664dcd73b1SHong Zhang PetscErrorCode MatCreateMPISBAIJConcatenateSeqSBAIJNumeric(MPI_Comm comm,Mat inmat,PetscInt n,Mat outmat) 28674dcd73b1SHong Zhang { 28684dcd73b1SHong Zhang PetscErrorCode ierr; 28694dcd73b1SHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 28704dcd73b1SHong Zhang PetscInt *indx; 28714dcd73b1SHong Zhang PetscScalar *values; 28724dcd73b1SHong Zhang 28734dcd73b1SHong Zhang PetscFunctionBegin; 28744dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 28754dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 28764dcd73b1SHong Zhang ierr = MatGetOwnershipRange(outmat,&rstart,NULL);CHKERRQ(ierr); 28774dcd73b1SHong Zhang 2878e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 28794dcd73b1SHong Zhang for (i=0; i<m; i++) { 28804dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 28814dcd73b1SHong Zhang Ii = i + rstart; 28824dcd73b1SHong Zhang ierr = MatSetValues(outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 28834dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 28844dcd73b1SHong Zhang } 2885e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 28864dcd73b1SHong Zhang ierr = MatAssemblyBegin(outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28874dcd73b1SHong Zhang ierr = MatAssemblyEnd(outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28884dcd73b1SHong Zhang PetscFunctionReturn(0); 28894dcd73b1SHong Zhang } 28904dcd73b1SHong Zhang 28914dcd73b1SHong Zhang #undef __FUNCT__ 28924dcd73b1SHong Zhang #define __FUNCT__ "MatCreateMPISBAIJConcatenateSeqSBAIJ" 28934dcd73b1SHong Zhang /*@ 28944dcd73b1SHong Zhang MatCreateMPISBAIJConcatenateSeqSBAIJ - Creates a single large PETSc matrix by concatenating sequential 28954dcd73b1SHong Zhang matrices from each processor 28964dcd73b1SHong Zhang 28974dcd73b1SHong Zhang Collective on MPI_Comm 28984dcd73b1SHong Zhang 28994dcd73b1SHong Zhang Input Parameters: 29004dcd73b1SHong Zhang + comm - the communicators the parallel matrix will live on 29014dcd73b1SHong Zhang . inmat - the input sequential matrices 29024dcd73b1SHong Zhang . n - number of local columns (or PETSC_DECIDE) 29034dcd73b1SHong Zhang - scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 29044dcd73b1SHong Zhang 29054dcd73b1SHong Zhang Output Parameter: 29064dcd73b1SHong Zhang . outmat - the parallel matrix generated 29074dcd73b1SHong Zhang 29084dcd73b1SHong Zhang Level: advanced 29094dcd73b1SHong Zhang 29104dcd73b1SHong Zhang Notes: The number of columns of the matrix in EACH processor MUST be the same. 29114dcd73b1SHong Zhang 29124dcd73b1SHong Zhang @*/ 29134dcd73b1SHong Zhang PetscErrorCode MatCreateMPISBAIJConcatenateSeqSBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 29144dcd73b1SHong Zhang { 29154dcd73b1SHong Zhang PetscErrorCode ierr; 29164dcd73b1SHong Zhang PetscMPIInt size; 29174dcd73b1SHong Zhang 29184dcd73b1SHong Zhang PetscFunctionBegin; 29194dcd73b1SHong Zhang /* same as MatCreateMPIAIJConcatenateSeqAIJ() */ 29204dcd73b1SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 29214dcd73b1SHong Zhang ierr = PetscLogEventBegin(MAT_Merge,inmat,0,0,0);CHKERRQ(ierr); 29224dcd73b1SHong Zhang if (size == 1) { 29234dcd73b1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 29244dcd73b1SHong Zhang ierr = MatDuplicate(inmat,MAT_COPY_VALUES,outmat);CHKERRQ(ierr); 29254dcd73b1SHong Zhang } else { 29264dcd73b1SHong Zhang ierr = MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 29274dcd73b1SHong Zhang } 29284dcd73b1SHong Zhang } else { 29294dcd73b1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 29304dcd73b1SHong Zhang ierr = MatCreateMPISBAIJConcatenateSeqSBAIJSymbolic(comm,inmat,n,outmat);CHKERRQ(ierr); 29314dcd73b1SHong Zhang } 29324dcd73b1SHong Zhang ierr = MatCreateMPISBAIJConcatenateSeqSBAIJNumeric(comm,inmat,n,*outmat);CHKERRQ(ierr); 29334dcd73b1SHong Zhang } 29344dcd73b1SHong Zhang ierr = PetscLogEventEnd(MAT_Merge,inmat,0,0,0);CHKERRQ(ierr); 29354dcd73b1SHong Zhang PetscFunctionReturn(0); 29364dcd73b1SHong Zhang } 29374dcd73b1SHong Zhang 29384dcd73b1SHong Zhang #undef __FUNCT__ 2939de4b53ebSHong Zhang #define __FUNCT__ "MatGetRedundantMatrix_MPISBAIJ" 2940de4b53ebSHong Zhang PetscErrorCode MatGetRedundantMatrix_MPISBAIJ(Mat mat,PetscInt nsubcomm,MPI_Comm subcomm,MatReuse reuse,Mat *matredundant) 2941de4b53ebSHong Zhang { 2942de4b53ebSHong Zhang PetscErrorCode ierr; 29434dcd73b1SHong Zhang MPI_Comm comm; 29449bd13290SHong Zhang PetscMPIInt size; 2945*2c7591d0SHong Zhang PetscInt mloc_sub,rstart,rend,M=mat->rmap->N,N=mat->cmap->N,bs=mat->rmap->bs; 29464dcd73b1SHong Zhang Mat_Redundant *redund=NULL; 29474dcd73b1SHong Zhang PetscSubcomm psubcomm=NULL; 29484dcd73b1SHong Zhang MPI_Comm subcomm_in=subcomm; 29494dcd73b1SHong Zhang Mat *matseq; 29504dcd73b1SHong Zhang IS isrow,iscol; 29510572e44dSHong Zhang PetscBool newsubcomm=PETSC_FALSE; 2952dfb205c3SBarry Smith 2953de4b53ebSHong Zhang PetscFunctionBegin; 29544dcd73b1SHong Zhang if (subcomm_in == MPI_COMM_NULL) { /* user does not provide subcomm */ 29554dcd73b1SHong Zhang if (reuse == MAT_INITIAL_MATRIX) { 29564dcd73b1SHong Zhang /* create psubcomm, then get subcomm */ 29574dcd73b1SHong Zhang ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 29584dcd73b1SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 29594dcd73b1SHong Zhang if (nsubcomm < 1 || nsubcomm > size) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"nsubcomm must between 1 and %D",size); 2960cf83caacSHong Zhang 29614dcd73b1SHong Zhang ierr = PetscSubcommCreate(comm,&psubcomm);CHKERRQ(ierr); 29624dcd73b1SHong Zhang ierr = PetscSubcommSetNumber(psubcomm,nsubcomm);CHKERRQ(ierr); 29634dcd73b1SHong Zhang ierr = PetscSubcommSetType(psubcomm,PETSC_SUBCOMM_CONTIGUOUS);CHKERRQ(ierr); 29644dcd73b1SHong Zhang ierr = PetscSubcommSetFromOptions(psubcomm);CHKERRQ(ierr); 29659bd13290SHong Zhang ierr = PetscCommDuplicate(psubcomm->comm,&subcomm,NULL);CHKERRQ(ierr); 29660572e44dSHong Zhang newsubcomm = PETSC_TRUE; 29679bd13290SHong Zhang ierr = PetscSubcommDestroy(&psubcomm);CHKERRQ(ierr); 29684dcd73b1SHong Zhang } else { /* retrieve psubcomm and subcomm */ 29694dcd73b1SHong Zhang ierr = PetscObjectGetComm((PetscObject)(*matredundant),&subcomm);CHKERRQ(ierr); 297081bf3e96SHong Zhang redund = (*matredundant)->redundant; 29714dcd73b1SHong Zhang } 29724dcd73b1SHong Zhang } 2973cf83caacSHong Zhang 29744dcd73b1SHong Zhang /* use MPI subcomm via MatGetSubMatrices(); use subcomm_in or psubcomm->comm (psubcomm->type != INTERLACED) */ 29754dcd73b1SHong Zhang if (reuse == MAT_INITIAL_MATRIX) { 29764dcd73b1SHong Zhang /* create a local sequential matrix matseq[0] */ 29774dcd73b1SHong Zhang mloc_sub = PETSC_DECIDE; 2978*2c7591d0SHong Zhang ierr = PetscSplitOwnershipBlock(subcomm,bs,&mloc_sub,&M);CHKERRQ(ierr); 29794dcd73b1SHong Zhang ierr = MPI_Scan(&mloc_sub,&rend,1,MPIU_INT,MPI_SUM,subcomm);CHKERRQ(ierr); 29804dcd73b1SHong Zhang rstart = rend - mloc_sub; 29814dcd73b1SHong Zhang ierr = ISCreateStride(PETSC_COMM_SELF,mloc_sub,rstart,1,&isrow);CHKERRQ(ierr); 29824dcd73b1SHong Zhang ierr = ISCreateStride(PETSC_COMM_SELF,N,0,1,&iscol);CHKERRQ(ierr); 29834dcd73b1SHong Zhang } else { /* reuse == MAT_REUSE_MATRIX */ 298481bf3e96SHong Zhang redund = (*matredundant)->redundant; 29854dcd73b1SHong Zhang isrow = redund->isrow; 29864dcd73b1SHong Zhang iscol = redund->iscol; 29874dcd73b1SHong Zhang matseq = redund->matseq; 29884dcd73b1SHong Zhang } 2989*2c7591d0SHong Zhang ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,reuse,&matseq);CHKERRQ(ierr); 29904dcd73b1SHong Zhang ierr = MatCreateMPISBAIJConcatenateSeqSBAIJ(subcomm,matseq[0],PETSC_DECIDE,reuse,matredundant);CHKERRQ(ierr); 2991*2c7591d0SHong Zhang //ierr = MatCreateMPIMatConcatenateSeqMat(subcomm,matseq[0],PETSC_DECIDE,reuse,matredundant);CHKERRQ(ierr); 29924dcd73b1SHong Zhang 29934dcd73b1SHong Zhang if (reuse == MAT_INITIAL_MATRIX) { 29944dcd73b1SHong Zhang /* create a supporting struct and attach it to C for reuse */ 29954dcd73b1SHong Zhang ierr = PetscNewLog(*matredundant,&redund);CHKERRQ(ierr); 299681bf3e96SHong Zhang (*matredundant)->redundant = redund; 29974dcd73b1SHong Zhang redund->isrow = isrow; 29984dcd73b1SHong Zhang redund->iscol = iscol; 29994dcd73b1SHong Zhang redund->matseq = matseq; 30000572e44dSHong Zhang if (newsubcomm) { 30019bd13290SHong Zhang redund->subcomm = subcomm; 30020572e44dSHong Zhang } else { 30030572e44dSHong Zhang redund->subcomm = MPI_COMM_NULL; 30040572e44dSHong Zhang } 30054dcd73b1SHong Zhang } 3006de4b53ebSHong Zhang PetscFunctionReturn(0); 3007de4b53ebSHong Zhang } 3008