1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51dfbe8321SBarry Smith PetscErrorCode ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66dfbe8321SBarry Smith PetscErrorCode ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 102085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 103ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \ 104a30f8f8cSSatish Balay N = nrow++ - 1; \ 105a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 106a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 107a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 108a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 111a30f8f8cSSatish Balay rp[_i] = bcol; \ 112a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 113a30f8f8cSSatish Balay a_noinsert:; \ 114a30f8f8cSSatish Balay ailen[brow] = nrow; \ 115a30f8f8cSSatish Balay } 116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 117a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 118a30f8f8cSSatish Balay { \ 119a30f8f8cSSatish Balay brow = row/bs; \ 120a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 121a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 122a30f8f8cSSatish Balay bcol = col/bs; \ 123a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 124a30f8f8cSSatish Balay low = 0; high = nrow; \ 125a30f8f8cSSatish Balay while (high-low > 3) { \ 126a30f8f8cSSatish Balay t = (low+high)/2; \ 127a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 128a30f8f8cSSatish Balay else low = t; \ 129a30f8f8cSSatish Balay } \ 130a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 131a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 132a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 133a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 134a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 135a30f8f8cSSatish Balay else *bap = value; \ 136a30f8f8cSSatish Balay goto b_noinsert; \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay } \ 139a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 140085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 141ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay b_noinsert:; \ 152a30f8f8cSSatish Balay bilen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #endif 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1574a2ae208SSatish Balay #undef __FUNCT__ 1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 160a30f8f8cSSatish Balay { 161a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 162dfbe8321SBarry Smith PetscErrorCode ierr; 1631302d50aSBarry Smith PetscInt i,N = m*n; 164a30f8f8cSSatish Balay MatScalar *vsingle; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (N > b->setvalueslen) { 168a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 16982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 170a30f8f8cSSatish Balay b->setvalueslen = N; 171a30f8f8cSSatish Balay } 172a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 173a30f8f8cSSatish Balay 174a30f8f8cSSatish Balay for (i=0; i<N; i++) { 175a30f8f8cSSatish Balay vsingle[i] = v[i]; 176a30f8f8cSSatish Balay } 177a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 178a30f8f8cSSatish Balay PetscFunctionReturn(0); 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 1814a2ae208SSatish Balay #undef __FUNCT__ 1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 184a30f8f8cSSatish Balay { 185a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 186dfbe8321SBarry Smith PetscErrorCode ierr; 1871302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 188a30f8f8cSSatish Balay MatScalar *vsingle; 189a30f8f8cSSatish Balay 190a30f8f8cSSatish Balay PetscFunctionBegin; 191a30f8f8cSSatish Balay if (N > b->setvalueslen) { 192a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 19382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 194a30f8f8cSSatish Balay b->setvalueslen = N; 195a30f8f8cSSatish Balay } 196a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 197a30f8f8cSSatish Balay for (i=0; i<N; i++) { 198a30f8f8cSSatish Balay vsingle[i] = v[i]; 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 201a30f8f8cSSatish Balay PetscFunctionReturn(0); 202a30f8f8cSSatish Balay } 203a30f8f8cSSatish Balay #endif 204a30f8f8cSSatish Balay 205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 206a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 207a30f8f8cSSatish Balay */ 2084a2ae208SSatish Balay #undef __FUNCT__ 209e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 211a30f8f8cSSatish Balay { 212a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 213a30f8f8cSSatish Balay MatScalar value; 214b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 215dfbe8321SBarry Smith PetscErrorCode ierr; 2161302d50aSBarry Smith PetscInt i,j,row,col; 2171302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 2181302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 219521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 220a30f8f8cSSatish Balay 221a30f8f8cSSatish Balay /* Some Variables required in the macro */ 222a30f8f8cSSatish Balay Mat A = baij->A; 223a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2241302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 225a30f8f8cSSatish Balay MatScalar *aa=a->a; 226a30f8f8cSSatish Balay 227a30f8f8cSSatish Balay Mat B = baij->B; 228a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2291302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 230a30f8f8cSSatish Balay MatScalar *ba=b->a; 231a30f8f8cSSatish Balay 2321302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2331302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 234a30f8f8cSSatish Balay MatScalar *ap,*bap; 235a30f8f8cSSatish Balay 236a30f8f8cSSatish Balay /* for stash */ 2371302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 238f65c83cfSHong Zhang MatScalar *v_loc=0; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay PetscFunctionBegin; 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay if(!baij->donotstash){ 2431302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 24482502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay 247a30f8f8cSSatish Balay for (i=0; i<m; i++) { 248a30f8f8cSSatish Balay if (im[i] < 0) continue; 2492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 25077431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 251a30f8f8cSSatish Balay #endif 252a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 253a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 254a30f8f8cSSatish Balay for (j=0; j<n; j++) { 255f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 256a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 257a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 258a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 259a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 260a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 261a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 262a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 263a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2642515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 26577431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 266a30f8f8cSSatish Balay #endif 267a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 268a30f8f8cSSatish Balay if (mat->was_assembled) { 269a30f8f8cSSatish Balay if (!baij->colmap) { 270653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 271a30f8f8cSSatish Balay } 272a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 273a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 27471730473SSatish Balay col = col - 1; 275a30f8f8cSSatish Balay #else 27671730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 277a30f8f8cSSatish Balay #endif 278a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 279a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 280a30f8f8cSSatish Balay col = in[j]; 281a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 282a30f8f8cSSatish Balay B = baij->B; 283a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 284a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 285a30f8f8cSSatish Balay ba=b->a; 28671730473SSatish Balay } else col += in[j]%bs; 287a30f8f8cSSatish Balay } else col = in[j]; 288a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 289a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 290a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 291a30f8f8cSSatish Balay } 292a30f8f8cSSatish Balay } 293a30f8f8cSSatish Balay } else { /* off processor entry */ 294a30f8f8cSSatish Balay if (!baij->donotstash) { 295a30f8f8cSSatish Balay n_loc = 0; 296a30f8f8cSSatish Balay for (j=0; j<n; j++){ 297f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 298a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 299a30f8f8cSSatish Balay if (roworiented) { 300a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 301a30f8f8cSSatish Balay } else { 302a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay n_loc++; 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 307a30f8f8cSSatish Balay } 308a30f8f8cSSatish Balay } 309a30f8f8cSSatish Balay } 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay if(!baij->donotstash){ 312a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 313a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay PetscFunctionReturn(0); 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay 3184a2ae208SSatish Balay #undef __FUNCT__ 319e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3201302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 321a30f8f8cSSatish Balay { 3220880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 323f15d580aSBarry Smith const MatScalar *value; 324f15d580aSBarry Smith MatScalar *barray=baij->barray; 3250880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 326dfbe8321SBarry Smith PetscErrorCode ierr; 3271302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 3281302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 329521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 3300880e062SHong Zhang 331a30f8f8cSSatish Balay PetscFunctionBegin; 3320880e062SHong Zhang if(!barray) { 3330880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3340880e062SHong Zhang baij->barray = barray; 3350880e062SHong Zhang } 3360880e062SHong Zhang 3370880e062SHong Zhang if (roworiented) { 3380880e062SHong Zhang stepval = (n-1)*bs; 3390880e062SHong Zhang } else { 3400880e062SHong Zhang stepval = (m-1)*bs; 3410880e062SHong Zhang } 3420880e062SHong Zhang for (i=0; i<m; i++) { 3430880e062SHong Zhang if (im[i] < 0) continue; 3442515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 34577431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3460880e062SHong Zhang #endif 3470880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3480880e062SHong Zhang row = im[i] - rstart; 3490880e062SHong Zhang for (j=0; j<n; j++) { 3500880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3510880e062SHong Zhang if ((roworiented) && (n == 1)) { 352f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3530880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 354f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3550880e062SHong Zhang } else { /* Here a copy is required */ 3560880e062SHong Zhang if (roworiented) { 3570880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3580880e062SHong Zhang } else { 3590880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3600880e062SHong Zhang } 3610880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3620880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3630880e062SHong Zhang *barray++ = *value++; 3640880e062SHong Zhang } 3650880e062SHong Zhang } 3660880e062SHong Zhang barray -=bs2; 3670880e062SHong Zhang } 3680880e062SHong Zhang 3690880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3700880e062SHong Zhang col = in[j] - cstart; 3710880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3720880e062SHong Zhang } 3730880e062SHong Zhang else if (in[j] < 0) continue; 3742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 37577431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3760880e062SHong Zhang #endif 3770880e062SHong Zhang else { 3780880e062SHong Zhang if (mat->was_assembled) { 3790880e062SHong Zhang if (!baij->colmap) { 380653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3810880e062SHong Zhang } 3820880e062SHong Zhang 3832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3840880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3851302d50aSBarry Smith { PetscInt data; 3860880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3870880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3880880e062SHong Zhang } 3890880e062SHong Zhang #else 3900880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3910880e062SHong Zhang #endif 3920880e062SHong Zhang #endif 3930880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3940880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3950880e062SHong Zhang col = (col - 1)/bs; 3960880e062SHong Zhang #else 3970880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3980880e062SHong Zhang #endif 3990880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4000880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4010880e062SHong Zhang col = in[j]; 4020880e062SHong Zhang } 4030880e062SHong Zhang } 4040880e062SHong Zhang else col = in[j]; 405e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4060880e062SHong Zhang } 4070880e062SHong Zhang } 4080880e062SHong Zhang } else { 4090880e062SHong Zhang if (!baij->donotstash) { 4100880e062SHong Zhang if (roworiented) { 4110880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4120880e062SHong Zhang } else { 4130880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4140880e062SHong Zhang } 4150880e062SHong Zhang } 4160880e062SHong Zhang } 4170880e062SHong Zhang } 4180880e062SHong Zhang PetscFunctionReturn(0); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay 4214a2ae208SSatish Balay #undef __FUNCT__ 4224a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4231302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 424a30f8f8cSSatish Balay { 425f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4266849ba73SBarry Smith PetscErrorCode ierr; 427521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 4281302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 429a30f8f8cSSatish Balay 430a30f8f8cSSatish Balay PetscFunctionBegin; 431a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43277431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 43377431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 434a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 435a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 436a30f8f8cSSatish Balay for (j=0; j<n; j++) { 43777431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 43877431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 439a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 440a30f8f8cSSatish Balay col = idxn[j] - bscstart; 441c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 442a30f8f8cSSatish Balay } else { 443a30f8f8cSSatish Balay if (!baij->colmap) { 444653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 445a30f8f8cSSatish Balay } 446a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 447a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 448a30f8f8cSSatish Balay data --; 449a30f8f8cSSatish Balay #else 450a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 451a30f8f8cSSatish Balay #endif 452a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 453a30f8f8cSSatish Balay else { 454a30f8f8cSSatish Balay col = data + idxn[j]%bs; 455e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 456a30f8f8cSSatish Balay } 457a30f8f8cSSatish Balay } 458a30f8f8cSSatish Balay } 459a30f8f8cSSatish Balay } else { 46029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 461a30f8f8cSSatish Balay } 462a30f8f8cSSatish Balay } 463a30f8f8cSSatish Balay PetscFunctionReturn(0); 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay 4664a2ae208SSatish Balay #undef __FUNCT__ 4674a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 468dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 469a30f8f8cSSatish Balay { 470a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 471dfbe8321SBarry Smith PetscErrorCode ierr; 472a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 473a30f8f8cSSatish Balay 474a30f8f8cSSatish Balay PetscFunctionBegin; 475a30f8f8cSSatish Balay if (baij->size == 1) { 476a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 478a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 479f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 480a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 481a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 482a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 483a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 484d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 485a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 486a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4870b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4880b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4890b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4900b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 4910b8dc8d2SHong Zhang PetscInt *jj,*garray=baij->garray,rstart=baij->rstart,nz; 4920b8dc8d2SHong Zhang PetscInt brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs; 4930b8dc8d2SHong Zhang MatScalar *v; 4940b8dc8d2SHong Zhang 4950b8dc8d2SHong Zhang ierr = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 4960b8dc8d2SHong Zhang rsum2 = rsum + mat->N; 4970b8dc8d2SHong Zhang ierr = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr); 4980b8dc8d2SHong Zhang /* Amat */ 4990b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5000b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5010b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5020b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5030b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5040b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5050b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5060b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5070b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5080b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5090b8dc8d2SHong Zhang /* non-diagonal block */ 5100b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5110b8dc8d2SHong Zhang } 5120b8dc8d2SHong Zhang } 5130b8dc8d2SHong Zhang } 5140b8dc8d2SHong Zhang } 5150b8dc8d2SHong Zhang /* Bmat */ 5160b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5170b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5180b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5190b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5200b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5210b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5220b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5230b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5240b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5250b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5260b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5270b8dc8d2SHong Zhang } 5280b8dc8d2SHong Zhang } 5290b8dc8d2SHong Zhang } 5300b8dc8d2SHong Zhang } 5310b8dc8d2SHong Zhang ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5320b8dc8d2SHong Zhang *norm = 0.0; 5330b8dc8d2SHong Zhang for (col=0; col<mat->N; col++) { 5340b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 537a30f8f8cSSatish Balay } else { 53829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay PetscFunctionReturn(0); 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay 5444a2ae208SSatish Balay #undef __FUNCT__ 5454a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 546dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 547a30f8f8cSSatish Balay { 548a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 549dfbe8321SBarry Smith PetscErrorCode ierr; 5501302d50aSBarry Smith PetscInt nstash,reallocs; 551a30f8f8cSSatish Balay InsertMode addv; 552a30f8f8cSSatish Balay 553a30f8f8cSSatish Balay PetscFunctionBegin; 554a30f8f8cSSatish Balay if (baij->donotstash) { 555a30f8f8cSSatish Balay PetscFunctionReturn(0); 556a30f8f8cSSatish Balay } 557a30f8f8cSSatish Balay 558a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 559a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 560a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 562a30f8f8cSSatish Balay } 563a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 566a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 567a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 56863ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 569a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 57063ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 571a30f8f8cSSatish Balay PetscFunctionReturn(0); 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay 5744a2ae208SSatish Balay #undef __FUNCT__ 5754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 576dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 577a30f8f8cSSatish Balay { 578a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 579a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 580a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 5816849ba73SBarry Smith PetscErrorCode ierr; 58213f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5831302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 58413f74950SBarry Smith PetscMPIInt n; 585a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 586a30f8f8cSSatish Balay MatScalar *val; 587a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 588a30f8f8cSSatish Balay 589a30f8f8cSSatish Balay PetscFunctionBegin; 590a30f8f8cSSatish Balay 591a30f8f8cSSatish Balay if (!baij->donotstash) { 592a30f8f8cSSatish Balay while (1) { 593a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 594a30f8f8cSSatish Balay if (!flg) break; 595a30f8f8cSSatish Balay 596a30f8f8cSSatish Balay for (i=0; i<n;) { 597a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 598a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 599a30f8f8cSSatish Balay if (j < n) ncols = j-i; 600a30f8f8cSSatish Balay else ncols = n-i; 601a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 602a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 603a30f8f8cSSatish Balay i = j; 604a30f8f8cSSatish Balay } 605a30f8f8cSSatish Balay } 606a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 607a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 608a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 609a30f8f8cSSatish Balay restore the original flags */ 610a30f8f8cSSatish Balay r1 = baij->roworiented; 611a30f8f8cSSatish Balay r2 = a->roworiented; 612a30f8f8cSSatish Balay r3 = b->roworiented; 613a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 614a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 615a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 616a30f8f8cSSatish Balay while (1) { 617a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 618a30f8f8cSSatish Balay if (!flg) break; 619a30f8f8cSSatish Balay 620a30f8f8cSSatish Balay for (i=0; i<n;) { 621a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 622a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 623a30f8f8cSSatish Balay if (j < n) ncols = j-i; 624a30f8f8cSSatish Balay else ncols = n-i; 625a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 626a30f8f8cSSatish Balay i = j; 627a30f8f8cSSatish Balay } 628a30f8f8cSSatish Balay } 629a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 630a30f8f8cSSatish Balay baij->roworiented = r1; 631a30f8f8cSSatish Balay a->roworiented = r2; 632a30f8f8cSSatish Balay b->roworiented = r3; 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay 635a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 636a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 637a30f8f8cSSatish Balay 638a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 639a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 640a30f8f8cSSatish Balay /* 641a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 642a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 643a30f8f8cSSatish Balay */ 644a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 645a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 646a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 647c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 651a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 653a30f8f8cSSatish Balay } 6544eb6d288SHong Zhang b->compressedrow.use = PETSC_TRUE; 655a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 656a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay if (baij->rowvalues) { 659a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 660a30f8f8cSSatish Balay baij->rowvalues = 0; 661a30f8f8cSSatish Balay } 6625222a1afSHong Zhang 663a30f8f8cSSatish Balay PetscFunctionReturn(0); 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay 6664a2ae208SSatish Balay #undef __FUNCT__ 6674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6686849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 669a30f8f8cSSatish Balay { 670a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 671dfbe8321SBarry Smith PetscErrorCode ierr; 672521d7252SBarry Smith PetscInt bs = mat->bs; 6731302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 67432077d6dSBarry Smith PetscTruth iascii,isdraw; 675b0a32e0cSBarry Smith PetscViewer sviewer; 676f3ef73ceSBarry Smith PetscViewerFormat format; 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay PetscFunctionBegin; 67932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 680fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68132077d6dSBarry Smith if (iascii) { 682b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 683456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 684a30f8f8cSSatish Balay MatInfo info; 685a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 686a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 68777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 68877431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 689521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 690a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 694b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 695a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 696a30f8f8cSSatish Balay PetscFunctionReturn(0); 697fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 69877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 699a30f8f8cSSatish Balay PetscFunctionReturn(0); 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay 703a30f8f8cSSatish Balay if (isdraw) { 704b0a32e0cSBarry Smith PetscDraw draw; 705a30f8f8cSSatish Balay PetscTruth isnull; 706b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 707b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay 710a30f8f8cSSatish Balay if (size == 1) { 711e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 713a30f8f8cSSatish Balay } else { 714a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 715a30f8f8cSSatish Balay Mat A; 71665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 71765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 7181302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 719a30f8f8cSSatish Balay MatScalar *a; 720a30f8f8cSSatish Balay 721f204ca49SKris Buschelman /* Should this be the same type as mat? */ 722f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 723a30f8f8cSSatish Balay if (!rank) { 724f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 725a30f8f8cSSatish Balay } else { 726f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 727a30f8f8cSSatish Balay } 728f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 729521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 731a30f8f8cSSatish Balay 732a30f8f8cSSatish Balay /* copy over the A part */ 73365d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 734a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7351302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 738a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 739a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 740a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 741a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 742a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 743a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 744a30f8f8cSSatish Balay col++; a += bs; 745a30f8f8cSSatish Balay } 746a30f8f8cSSatish Balay } 747a30f8f8cSSatish Balay } 748a30f8f8cSSatish Balay /* copy over the B part */ 74965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 751a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 752a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 753a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 754a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 755a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 756a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 757a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 758a30f8f8cSSatish Balay col++; a += bs; 759a30f8f8cSSatish Balay } 760a30f8f8cSSatish Balay } 761a30f8f8cSSatish Balay } 762a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 763a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 764a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 765a30f8f8cSSatish Balay /* 766a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 767b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 768a30f8f8cSSatish Balay */ 769b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 77065d70643SHong Zhang if (!rank) { 771e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 772a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 773a30f8f8cSSatish Balay } 774b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 775a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 776a30f8f8cSSatish Balay } 777a30f8f8cSSatish Balay PetscFunctionReturn(0); 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay 7804a2ae208SSatish Balay #undef __FUNCT__ 7814a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 782dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 783a30f8f8cSSatish Balay { 784dfbe8321SBarry Smith PetscErrorCode ierr; 78532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 786a30f8f8cSSatish Balay 787a30f8f8cSSatish Balay PetscFunctionBegin; 78832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 789fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 790b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 791fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 79232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 793a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 794a30f8f8cSSatish Balay } else { 7951302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 796a30f8f8cSSatish Balay } 797a30f8f8cSSatish Balay PetscFunctionReturn(0); 798a30f8f8cSSatish Balay } 799a30f8f8cSSatish Balay 8004a2ae208SSatish Balay #undef __FUNCT__ 8014a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 802dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 803a30f8f8cSSatish Balay { 804a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 805dfbe8321SBarry Smith PetscErrorCode ierr; 806a30f8f8cSSatish Balay 807a30f8f8cSSatish Balay PetscFunctionBegin; 808a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 80977431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 810a30f8f8cSSatish Balay #endif 811a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 812a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 813a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 815a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 816a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 817a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 818a30f8f8cSSatish Balay #else 819a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 820a30f8f8cSSatish Balay #endif 821a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 822a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 823a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 82440781036SHong Zhang if (baij->slvec0) { 82540781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 82640781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 82740781036SHong Zhang } 82840781036SHong Zhang if (baij->slvec1) { 82940781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83040781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 83140781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 83240781036SHong Zhang } 83340781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 834a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 835a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 836a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 837a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 838a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 839a30f8f8cSSatish Balay #endif 840a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 841901853e0SKris Buschelman 842901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 843901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 844901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 845901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 846a30f8f8cSSatish Balay PetscFunctionReturn(0); 847a30f8f8cSSatish Balay } 848a30f8f8cSSatish Balay 8494a2ae208SSatish Balay #undef __FUNCT__ 850a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 851dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 852a9d4b620SHong Zhang { 853a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 854dfbe8321SBarry Smith PetscErrorCode ierr; 855521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 856a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 857a9d4b620SHong Zhang 858a9d4b620SHong Zhang PetscFunctionBegin; 859a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 860a9d4b620SHong Zhang if (nt != A->n) { 861a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 862a9d4b620SHong Zhang } 863a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 864a9d4b620SHong Zhang if (nt != A->m) { 865a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 866a9d4b620SHong Zhang } 867a9d4b620SHong Zhang 868a9d4b620SHong Zhang /* diagonal part */ 869a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8702dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 871a9d4b620SHong Zhang 872a9d4b620SHong Zhang /* subdiagonal part */ 873a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 874a9d4b620SHong Zhang 875a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8761ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8771ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 878a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 8791ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 880a9d4b620SHong Zhang 881a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 8821ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 883a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 884a9d4b620SHong Zhang 885a9d4b620SHong Zhang /* supperdiagonal part */ 886a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 887a9d4b620SHong Zhang 888a9d4b620SHong Zhang PetscFunctionReturn(0); 889a9d4b620SHong Zhang } 890a9d4b620SHong Zhang 891a9d4b620SHong Zhang #undef __FUNCT__ 89240781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 893dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 894a30f8f8cSSatish Balay { 895a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 896dfbe8321SBarry Smith PetscErrorCode ierr; 8971302d50aSBarry Smith PetscInt nt; 898a30f8f8cSSatish Balay 899a30f8f8cSSatish Balay PetscFunctionBegin; 900a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 901b5df2d14SHong Zhang if (nt != A->n) { 90229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 903a30f8f8cSSatish Balay } 904a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 905b5df2d14SHong Zhang if (nt != A->m) { 90629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 907a30f8f8cSSatish Balay } 90865d70643SHong Zhang 909b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 910b941877fSHong Zhang /* do diagonal part */ 911b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 912b941877fSHong Zhang /* do supperdiagonal part */ 913b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 914b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 915b941877fSHong Zhang /* do subdiagonal part */ 916b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 917b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 918b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 91965d70643SHong Zhang 920a30f8f8cSSatish Balay PetscFunctionReturn(0); 921a30f8f8cSSatish Balay } 922a30f8f8cSSatish Balay 9234a2ae208SSatish Balay #undef __FUNCT__ 9244a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 925dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 926a30f8f8cSSatish Balay { 927de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 928dfbe8321SBarry Smith PetscErrorCode ierr; 929521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 930a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 931a9d4b620SHong Zhang 932a9d4b620SHong Zhang PetscFunctionBegin; 933a9d4b620SHong Zhang /* 93456faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 93556faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 936a9d4b620SHong Zhang */ 937a9d4b620SHong Zhang /* diagonal part */ 938a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9392dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 940a9d4b620SHong Zhang 941a9d4b620SHong Zhang /* subdiagonal part */ 942a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 943a9d4b620SHong Zhang 944a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9451ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9461ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 947a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9481ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 949a9d4b620SHong Zhang 950a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9511ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 952a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 953a9d4b620SHong Zhang 954a9d4b620SHong Zhang /* supperdiagonal part */ 955a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 956a9d4b620SHong Zhang 957a9d4b620SHong Zhang PetscFunctionReturn(0); 958a9d4b620SHong Zhang } 959a9d4b620SHong Zhang 960a9d4b620SHong Zhang #undef __FUNCT__ 961a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 962dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 963a9d4b620SHong Zhang { 964a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 965dfbe8321SBarry Smith PetscErrorCode ierr; 966a30f8f8cSSatish Balay 967a30f8f8cSSatish Balay PetscFunctionBegin; 968b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 969b941877fSHong Zhang /* do diagonal part */ 970b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 971b941877fSHong Zhang /* do supperdiagonal part */ 972b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 973de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 974de8b6608SHong Zhang 975b941877fSHong Zhang /* do subdiagonal part */ 976a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 977a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 978a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 979aa482183SHong Zhang 980a30f8f8cSSatish Balay PetscFunctionReturn(0); 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay 983a30f8f8cSSatish Balay /* 984a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 985a30f8f8cSSatish Balay diagonal block 986a30f8f8cSSatish Balay */ 9874a2ae208SSatish Balay #undef __FUNCT__ 9884a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 989dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 990a30f8f8cSSatish Balay { 991a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 992dfbe8321SBarry Smith PetscErrorCode ierr; 993a30f8f8cSSatish Balay 994a30f8f8cSSatish Balay PetscFunctionBegin; 99529bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 996a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 997a30f8f8cSSatish Balay PetscFunctionReturn(0); 998a30f8f8cSSatish Balay } 999a30f8f8cSSatish Balay 10004a2ae208SSatish Balay #undef __FUNCT__ 10014a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1002f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1003a30f8f8cSSatish Balay { 1004a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1005dfbe8321SBarry Smith PetscErrorCode ierr; 1006a30f8f8cSSatish Balay 1007a30f8f8cSSatish Balay PetscFunctionBegin; 1008f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1009f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1010a30f8f8cSSatish Balay PetscFunctionReturn(0); 1011a30f8f8cSSatish Balay } 1012a30f8f8cSSatish Balay 10134a2ae208SSatish Balay #undef __FUNCT__ 10144a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10151302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1016a30f8f8cSSatish Balay { 1017a30f8f8cSSatish Balay PetscFunctionBegin; 1018d23016edSBarry Smith if (matin) SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format"); 1019a30f8f8cSSatish Balay PetscFunctionReturn(0); 1020a30f8f8cSSatish Balay } 1021a30f8f8cSSatish Balay 10224a2ae208SSatish Balay #undef __FUNCT__ 10234a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10241302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1025a30f8f8cSSatish Balay { 1026a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1027a30f8f8cSSatish Balay 1028a30f8f8cSSatish Balay PetscFunctionBegin; 1029abc0a331SBarry Smith if (!baij->getrowactive) { 1030abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1031a30f8f8cSSatish Balay } 1032a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1033a30f8f8cSSatish Balay PetscFunctionReturn(0); 1034a30f8f8cSSatish Balay } 1035a30f8f8cSSatish Balay 10364a2ae208SSatish Balay #undef __FUNCT__ 10374a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1038dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1039a30f8f8cSSatish Balay { 1040a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1041dfbe8321SBarry Smith PetscErrorCode ierr; 1042a30f8f8cSSatish Balay 1043a30f8f8cSSatish Balay PetscFunctionBegin; 1044a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1045a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1046a30f8f8cSSatish Balay PetscFunctionReturn(0); 1047a30f8f8cSSatish Balay } 1048a30f8f8cSSatish Balay 10494a2ae208SSatish Balay #undef __FUNCT__ 10504a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1051dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1052a30f8f8cSSatish Balay { 1053a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1054a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1055dfbe8321SBarry Smith PetscErrorCode ierr; 1056a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1057a30f8f8cSSatish Balay 1058a30f8f8cSSatish Balay PetscFunctionBegin; 1059521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1060a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1061a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1062a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1063a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1064a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1065a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1066a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1067a30f8f8cSSatish Balay info->nz_used = isend[0]; 1068a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1069a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1070a30f8f8cSSatish Balay info->memory = isend[3]; 1071a30f8f8cSSatish Balay info->mallocs = isend[4]; 1072a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1073d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1074a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1075a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1076a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1077a30f8f8cSSatish Balay info->memory = irecv[3]; 1078a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1079a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1080d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1081a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1082a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1083a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1084a30f8f8cSSatish Balay info->memory = irecv[3]; 1085a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1086a30f8f8cSSatish Balay } else { 108777431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1088a30f8f8cSSatish Balay } 1089f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1090f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1091f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1092f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1093a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1094a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1095a30f8f8cSSatish Balay info->factor_mallocs = 0; 1096a30f8f8cSSatish Balay PetscFunctionReturn(0); 1097a30f8f8cSSatish Balay } 1098a30f8f8cSSatish Balay 10994a2ae208SSatish Balay #undef __FUNCT__ 11004a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1101dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1102a30f8f8cSSatish Balay { 1103a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1104dfbe8321SBarry Smith PetscErrorCode ierr; 1105a30f8f8cSSatish Balay 1106a30f8f8cSSatish Balay PetscFunctionBegin; 1107e98b92d7SKris Buschelman switch (op) { 1108e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1109e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1110e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1111e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1112e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1113e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1114e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1115a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1116a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1117e98b92d7SKris Buschelman break; 1118e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1119a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1120a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1121a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1122e98b92d7SKris Buschelman break; 1123e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1124e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1125e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 112663ba0a88SBarry Smith ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr); 1127e98b92d7SKris Buschelman break; 1128e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1129a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1130a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1131a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1132e98b92d7SKris Buschelman break; 1133e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1134a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1135e98b92d7SKris Buschelman break; 1136e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 113729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1138e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1139a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1140e98b92d7SKris Buschelman break; 11419a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 11429a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 11439a4540c5SBarry Smith case MAT_HERMITIAN: 11449a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 114577e54ba9SKris Buschelman case MAT_SYMMETRIC: 114677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 11479a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 11489a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 11499a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 115077e54ba9SKris Buschelman break; 1151e98b92d7SKris Buschelman default: 115229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1153a30f8f8cSSatish Balay } 1154a30f8f8cSSatish Balay PetscFunctionReturn(0); 1155a30f8f8cSSatish Balay } 1156a30f8f8cSSatish Balay 11574a2ae208SSatish Balay #undef __FUNCT__ 11588115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1159dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1160a30f8f8cSSatish Balay { 1161dfbe8321SBarry Smith PetscErrorCode ierr; 1162a30f8f8cSSatish Balay PetscFunctionBegin; 1163999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 11648115998fSBarry Smith PetscFunctionReturn(0); 1165a30f8f8cSSatish Balay } 1166a30f8f8cSSatish Balay 11674a2ae208SSatish Balay #undef __FUNCT__ 11684a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1169dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1170a30f8f8cSSatish Balay { 1171a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1172a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1173dfbe8321SBarry Smith PetscErrorCode ierr; 11745e90f9d9SHong Zhang PetscInt nv,m,n; 1175b3bf805bSHong Zhang PetscTruth flg; 1176a30f8f8cSSatish Balay 1177a30f8f8cSSatish Balay PetscFunctionBegin; 1178a30f8f8cSSatish Balay if (ll != rr){ 1179b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1180b3bf805bSHong Zhang if (!flg) 118129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1182a30f8f8cSSatish Balay } 1183b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1184b3bf805bSHong Zhang 11855e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 11865e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1187b3bf805bSHong Zhang 11885e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 11895e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 11905e90f9d9SHong Zhang 1191a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 11925e90f9d9SHong Zhang 11935e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1194a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 11955e90f9d9SHong Zhang 11965e90f9d9SHong Zhang /* scale the diagonal part */ 1197a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1198a30f8f8cSSatish Balay 11995e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1200a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1201a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1202a30f8f8cSSatish Balay PetscFunctionReturn(0); 1203a30f8f8cSSatish Balay } 1204a30f8f8cSSatish Balay 12054a2ae208SSatish Balay #undef __FUNCT__ 12064a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1207dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1208a30f8f8cSSatish Balay { 1209a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1210a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 12111302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1212dfbe8321SBarry Smith PetscErrorCode ierr; 1213a30f8f8cSSatish Balay 1214a30f8f8cSSatish Balay PetscFunctionBegin; 1215a30f8f8cSSatish Balay if (!a->rank) { 1216a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1217a30f8f8cSSatish Balay } 12181302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1219a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1220a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1221a30f8f8cSSatish Balay PetscFunctionReturn(0); 1222a30f8f8cSSatish Balay } 1223a30f8f8cSSatish Balay 12244a2ae208SSatish Balay #undef __FUNCT__ 12254a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1226dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1227a30f8f8cSSatish Balay { 1228f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1229dfbe8321SBarry Smith PetscErrorCode ierr; 1230a30f8f8cSSatish Balay 1231a30f8f8cSSatish Balay PetscFunctionBegin; 1232a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1233a30f8f8cSSatish Balay PetscFunctionReturn(0); 1234a30f8f8cSSatish Balay } 1235a30f8f8cSSatish Balay 12366849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1237a30f8f8cSSatish Balay 12384a2ae208SSatish Balay #undef __FUNCT__ 12394a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1240dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1241a30f8f8cSSatish Balay { 1242a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1243a30f8f8cSSatish Balay Mat a,b,c,d; 1244a30f8f8cSSatish Balay PetscTruth flg; 1245dfbe8321SBarry Smith PetscErrorCode ierr; 1246a30f8f8cSSatish Balay 1247a30f8f8cSSatish Balay PetscFunctionBegin; 1248a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1249a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1250a30f8f8cSSatish Balay 1251a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1252abc0a331SBarry Smith if (flg) { 1253a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1254a30f8f8cSSatish Balay } 1255a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1256a30f8f8cSSatish Balay PetscFunctionReturn(0); 1257a30f8f8cSSatish Balay } 1258a30f8f8cSSatish Balay 12594a2ae208SSatish Balay #undef __FUNCT__ 12604a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1261dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1262273d9f13SBarry Smith { 1263dfbe8321SBarry Smith PetscErrorCode ierr; 1264273d9f13SBarry Smith 1265273d9f13SBarry Smith PetscFunctionBegin; 1266273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1267273d9f13SBarry Smith PetscFunctionReturn(0); 1268273d9f13SBarry Smith } 1269a5e6ed63SBarry Smith 1270a5e6ed63SBarry Smith #undef __FUNCT__ 1271a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 12721302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1273a5e6ed63SBarry Smith { 12746849ba73SBarry Smith PetscErrorCode ierr; 12751302d50aSBarry Smith PetscInt i; 1276a5e6ed63SBarry Smith PetscTruth flg; 1277a5e6ed63SBarry Smith 12786849ba73SBarry Smith PetscFunctionBegin; 1279a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1280a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1281a5e6ed63SBarry Smith if (!flg) { 12821302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1283a5e6ed63SBarry Smith } 1284a5e6ed63SBarry Smith } 1285a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1286a5e6ed63SBarry Smith PetscFunctionReturn(0); 1287a5e6ed63SBarry Smith } 1288a5e6ed63SBarry Smith 1289a5e6ed63SBarry Smith 1290a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1291a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1292a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1293a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1294a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1295a9d4b620SHong Zhang MatMult_MPISBAIJ, 129697304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1297431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1298431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1299a30f8f8cSSatish Balay 0, 1300a30f8f8cSSatish Balay 0, 1301a30f8f8cSSatish Balay 0, 130297304618SKris Buschelman /*10*/ 0, 1303a30f8f8cSSatish Balay 0, 1304a30f8f8cSSatish Balay 0, 13052798e883SHong Zhang MatRelax_MPISBAIJ, 1306a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 130797304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1308a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1309a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1310a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1311a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 131297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1313a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1314a30f8f8cSSatish Balay 0, 1315a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1316a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1317dcf5cc72SBarry Smith /*25*/ 0, 1318a30f8f8cSSatish Balay 0, 1319a30f8f8cSSatish Balay 0, 1320a30f8f8cSSatish Balay 0, 1321a30f8f8cSSatish Balay 0, 132297304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1323b5df2d14SHong Zhang 0, 1324a30f8f8cSSatish Balay 0, 1325a30f8f8cSSatish Balay 0, 1326a30f8f8cSSatish Balay 0, 132797304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1328a30f8f8cSSatish Balay 0, 1329a30f8f8cSSatish Balay 0, 1330a30f8f8cSSatish Balay 0, 1331a30f8f8cSSatish Balay 0, 133297304618SKris Buschelman /*40*/ 0, 1333a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1334d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1335a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1336a30f8f8cSSatish Balay 0, 133797304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1338a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1339a30f8f8cSSatish Balay 0, 1340a30f8f8cSSatish Balay 0, 1341a30f8f8cSSatish Balay 0, 1342521d7252SBarry Smith /*50*/ 0, 1343a30f8f8cSSatish Balay 0, 1344a30f8f8cSSatish Balay 0, 1345a30f8f8cSSatish Balay 0, 1346a30f8f8cSSatish Balay 0, 134797304618SKris Buschelman /*55*/ 0, 1348a30f8f8cSSatish Balay 0, 1349a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1350a30f8f8cSSatish Balay 0, 1351a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 135297304618SKris Buschelman /*60*/ 0, 1353a30f8f8cSSatish Balay 0, 1354a30f8f8cSSatish Balay 0, 13558a124369SBarry Smith MatGetPetscMaps_Petsc, 135624d5174aSHong Zhang 0, 135797304618SKris Buschelman /*65*/ 0, 135824d5174aSHong Zhang 0, 135924d5174aSHong Zhang 0, 136024d5174aSHong Zhang 0, 136124d5174aSHong Zhang 0, 136297304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 136324d5174aSHong Zhang 0, 136497304618SKris Buschelman 0, 136597304618SKris Buschelman 0, 136697304618SKris Buschelman 0, 136797304618SKris Buschelman /*75*/ 0, 136897304618SKris Buschelman 0, 136997304618SKris Buschelman 0, 137097304618SKris Buschelman 0, 137197304618SKris Buschelman 0, 137297304618SKris Buschelman /*80*/ 0, 137397304618SKris Buschelman 0, 137497304618SKris Buschelman 0, 137597304618SKris Buschelman 0, 1376865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1377865e5f61SKris Buschelman /*85*/ 0, 1378865e5f61SKris Buschelman 0, 1379865e5f61SKris Buschelman 0, 1380865e5f61SKris Buschelman 0, 1381865e5f61SKris Buschelman 0, 1382865e5f61SKris Buschelman /*90*/ 0, 1383865e5f61SKris Buschelman 0, 1384865e5f61SKris Buschelman 0, 1385865e5f61SKris Buschelman 0, 1386865e5f61SKris Buschelman 0, 1387865e5f61SKris Buschelman /*95*/ 0, 1388865e5f61SKris Buschelman 0, 1389865e5f61SKris Buschelman 0, 1390865e5f61SKris Buschelman 0}; 1391a30f8f8cSSatish Balay 1392a30f8f8cSSatish Balay 1393a30f8f8cSSatish Balay EXTERN_C_BEGIN 13944a2ae208SSatish Balay #undef __FUNCT__ 13954a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1396be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1397a30f8f8cSSatish Balay { 1398a30f8f8cSSatish Balay PetscFunctionBegin; 1399a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1400a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1401a30f8f8cSSatish Balay PetscFunctionReturn(0); 1402a30f8f8cSSatish Balay } 1403a30f8f8cSSatish Balay EXTERN_C_END 1404a30f8f8cSSatish Balay 1405273d9f13SBarry Smith EXTERN_C_BEGIN 14064a2ae208SSatish Balay #undef __FUNCT__ 1407a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1408be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1409a23d5eceSKris Buschelman { 1410a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1411dfbe8321SBarry Smith PetscErrorCode ierr; 14121302d50aSBarry Smith PetscInt i,mbs,Mbs; 1413a23d5eceSKris Buschelman 1414a23d5eceSKris Buschelman PetscFunctionBegin; 1415a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1416a23d5eceSKris Buschelman 1417a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1418a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1419a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 142077431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 142177431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1422a23d5eceSKris Buschelman if (d_nnz) { 1423a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 142477431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1425a23d5eceSKris Buschelman } 1426a23d5eceSKris Buschelman } 1427a23d5eceSKris Buschelman if (o_nnz) { 1428a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 142977431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1430a23d5eceSKris Buschelman } 1431a23d5eceSKris Buschelman } 1432a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1433a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1434a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1435a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1436a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1437a23d5eceSKris Buschelman 1438a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1439a23d5eceSKris Buschelman mbs = B->m/bs; 1440a23d5eceSKris Buschelman Mbs = B->M/bs; 1441a23d5eceSKris Buschelman if (mbs*bs != B->m) { 144277431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1443a23d5eceSKris Buschelman } 1444a23d5eceSKris Buschelman 1445521d7252SBarry Smith B->bs = bs; 1446a23d5eceSKris Buschelman b->bs2 = bs*bs; 1447a23d5eceSKris Buschelman b->mbs = mbs; 1448a23d5eceSKris Buschelman b->nbs = mbs; 1449a23d5eceSKris Buschelman b->Mbs = Mbs; 1450a23d5eceSKris Buschelman b->Nbs = Mbs; 1451a23d5eceSKris Buschelman 1452a7cc72afSBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 1453a23d5eceSKris Buschelman b->rowners[0] = 0; 1454a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1455a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1456a23d5eceSKris Buschelman } 1457a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1458a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1459a23d5eceSKris Buschelman b->cstart = b->rstart; 1460a23d5eceSKris Buschelman b->cend = b->rend; 1461a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1462a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1463a23d5eceSKris Buschelman } 1464a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1465a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1466a23d5eceSKris Buschelman 1467a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1468a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1469a23d5eceSKris Buschelman 1470f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1471f69a0ea3SMatthew Knepley ierr = MatSetSizes(b->A,B->m,B->m,B->m,B->m);CHKERRQ(ierr); 14729c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1473c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 147452e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 14759c097c71SKris Buschelman 1476f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1477f69a0ea3SMatthew Knepley ierr = MatSetSizes(b->B,B->m,B->M,B->m,B->M);CHKERRQ(ierr); 14784aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1479589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 148052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1481a23d5eceSKris Buschelman 1482a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1483a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1484a23d5eceSKris Buschelman 1485a23d5eceSKris Buschelman PetscFunctionReturn(0); 1486a23d5eceSKris Buschelman } 1487a23d5eceSKris Buschelman EXTERN_C_END 1488a23d5eceSKris Buschelman 14890bad9183SKris Buschelman /*MC 1490fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 14910bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 14920bad9183SKris Buschelman 14930bad9183SKris Buschelman Options Database Keys: 14940bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 14950bad9183SKris Buschelman 14960bad9183SKris Buschelman Level: beginner 14970bad9183SKris Buschelman 14980bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 14990bad9183SKris Buschelman M*/ 15000bad9183SKris Buschelman 1501a23d5eceSKris Buschelman EXTERN_C_BEGIN 1502a23d5eceSKris Buschelman #undef __FUNCT__ 15034a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1504be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1505b5df2d14SHong Zhang { 1506b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1507dfbe8321SBarry Smith PetscErrorCode ierr; 1508b5df2d14SHong Zhang PetscTruth flg; 1509b5df2d14SHong Zhang 1510b5df2d14SHong Zhang PetscFunctionBegin; 1511b5df2d14SHong Zhang 1512b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1513b0a32e0cSBarry Smith B->data = (void*)b; 1514b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1515b5df2d14SHong Zhang 1516b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1517b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1518b5df2d14SHong Zhang B->mapping = 0; 1519b5df2d14SHong Zhang B->factor = 0; 1520b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1521b5df2d14SHong Zhang 1522b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1523b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1524b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1525b5df2d14SHong Zhang 1526b5df2d14SHong Zhang /* build local table of row and column ownerships */ 15271302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1528273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1529273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 153052e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1531b5df2d14SHong Zhang 1532b5df2d14SHong Zhang /* build cache for off array entries formed */ 1533b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1534b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1535b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1536b5df2d14SHong Zhang b->garray = PETSC_NULL; 1537b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1538b5df2d14SHong Zhang 1539f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1540b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 154164a35ccbSBarry Smith b->setvalueslen = 0; 1542b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1543b5df2d14SHong Zhang #endif 1544b5df2d14SHong Zhang 1545b5df2d14SHong Zhang /* stuff used in block assembly */ 1546b5df2d14SHong Zhang b->barray = 0; 1547b5df2d14SHong Zhang 1548b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1549b5df2d14SHong Zhang b->lvec = 0; 1550b5df2d14SHong Zhang b->Mvctx = 0; 155140781036SHong Zhang b->slvec0 = 0; 155240781036SHong Zhang b->slvec0b = 0; 155340781036SHong Zhang b->slvec1 = 0; 155440781036SHong Zhang b->slvec1a = 0; 155540781036SHong Zhang b->slvec1b = 0; 155640781036SHong Zhang b->sMvctx = 0; 1557b5df2d14SHong Zhang 1558b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1559b5df2d14SHong Zhang b->rowindices = 0; 1560b5df2d14SHong Zhang b->rowvalues = 0; 1561b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1562b5df2d14SHong Zhang 1563b5df2d14SHong Zhang /* hash table stuff */ 1564b5df2d14SHong Zhang b->ht = 0; 1565b5df2d14SHong Zhang b->hd = 0; 1566b5df2d14SHong Zhang b->ht_size = 0; 1567b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1568b5df2d14SHong Zhang b->ht_fact = 0; 1569b5df2d14SHong Zhang b->ht_total_ct = 0; 1570b5df2d14SHong Zhang b->ht_insert_ct = 0; 1571b5df2d14SHong Zhang 1572e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1573b5df2d14SHong Zhang if (flg) { 1574f6275e2eSBarry Smith PetscReal fact = 1.39; 1575b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1576e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1577b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1578b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 157963ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr); 1580b5df2d14SHong Zhang } 1581b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1582b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1583b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1584b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1585b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1586b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1587b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1588b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1589b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1590a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1591a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1592a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 159323ce1328SBarry Smith B->symmetric = PETSC_TRUE; 159423ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 159523ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 159623ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1597b5df2d14SHong Zhang PetscFunctionReturn(0); 1598b5df2d14SHong Zhang } 1599273d9f13SBarry Smith EXTERN_C_END 1600b5df2d14SHong Zhang 1601209238afSKris Buschelman /*MC 1602002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1603209238afSKris Buschelman 1604209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1605209238afSKris Buschelman and MATMPISBAIJ otherwise. 1606209238afSKris Buschelman 1607209238afSKris Buschelman Options Database Keys: 1608209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1609209238afSKris Buschelman 1610209238afSKris Buschelman Level: beginner 1611209238afSKris Buschelman 1612209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1613209238afSKris Buschelman M*/ 1614209238afSKris Buschelman 1615209238afSKris Buschelman EXTERN_C_BEGIN 1616209238afSKris Buschelman #undef __FUNCT__ 1617209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1618be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1619dfbe8321SBarry Smith { 16206849ba73SBarry Smith PetscErrorCode ierr; 16211302d50aSBarry Smith PetscMPIInt size; 1622209238afSKris Buschelman 1623209238afSKris Buschelman PetscFunctionBegin; 1624209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1625209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1626209238afSKris Buschelman if (size == 1) { 1627209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1628209238afSKris Buschelman } else { 1629209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1630209238afSKris Buschelman } 1631209238afSKris Buschelman PetscFunctionReturn(0); 1632209238afSKris Buschelman } 1633209238afSKris Buschelman EXTERN_C_END 1634209238afSKris Buschelman 16354a2ae208SSatish Balay #undef __FUNCT__ 16364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1637b5df2d14SHong Zhang /*@C 1638b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1639b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1640b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1641b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1642b5df2d14SHong Zhang 1643b5df2d14SHong Zhang Collective on Mat 1644b5df2d14SHong Zhang 1645b5df2d14SHong Zhang Input Parameters: 1646b5df2d14SHong Zhang + A - the matrix 1647b5df2d14SHong Zhang . bs - size of blockk 1648b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1649b5df2d14SHong Zhang submatrix (same for all local rows) 1650b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 16516d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 16526d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 16536d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1654b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1655b5df2d14SHong Zhang submatrix (same for all local rows). 1656b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1657b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1658b5df2d14SHong Zhang each block row) or PETSC_NULL. 1659b5df2d14SHong Zhang 1660b5df2d14SHong Zhang 1661b5df2d14SHong Zhang Options Database Keys: 1662b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1663b5df2d14SHong Zhang block calculations (much slower) 1664b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1665b5df2d14SHong Zhang 1666b5df2d14SHong Zhang Notes: 1667b5df2d14SHong Zhang 1668b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1669b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1670b5df2d14SHong Zhang 167149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 167249a6f317SBarry Smith 1673b5df2d14SHong Zhang Storage Information: 1674b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1675b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1676b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1677b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1678b5df2d14SHong Zhang 1679b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1680b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1681b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1682b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1683b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1684b5df2d14SHong Zhang 1685b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1686b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1687b5df2d14SHong Zhang 1688b5df2d14SHong Zhang .vb 1689b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1690b5df2d14SHong Zhang ------------------- 1691b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1692b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1693b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1694b5df2d14SHong Zhang ------------------- 1695b5df2d14SHong Zhang .ve 1696b5df2d14SHong Zhang 1697b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1698b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 16996d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 17006d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1701b5df2d14SHong Zhang 17026d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 17036d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1704b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1705b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1706b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1707b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1708b5df2d14SHong Zhang matrices. 1709b5df2d14SHong Zhang 1710b5df2d14SHong Zhang Level: intermediate 1711b5df2d14SHong Zhang 1712b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1713b5df2d14SHong Zhang 1714b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1715b5df2d14SHong Zhang @*/ 1716be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1717b5df2d14SHong Zhang { 17181302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1719b5df2d14SHong Zhang 1720b5df2d14SHong Zhang PetscFunctionBegin; 1721a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1722a23d5eceSKris Buschelman if (f) { 1723a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1724b5df2d14SHong Zhang } 1725b5df2d14SHong Zhang PetscFunctionReturn(0); 1726b5df2d14SHong Zhang } 1727b5df2d14SHong Zhang 17284a2ae208SSatish Balay #undef __FUNCT__ 17294a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1730a30f8f8cSSatish Balay /*@C 1731a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1732a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1733a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1734a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1735a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1736a30f8f8cSSatish Balay 1737a30f8f8cSSatish Balay Collective on MPI_Comm 1738a30f8f8cSSatish Balay 1739a30f8f8cSSatish Balay Input Parameters: 1740a30f8f8cSSatish Balay + comm - MPI communicator 1741a30f8f8cSSatish Balay . bs - size of blockk 1742a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1743a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1744a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1745a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1746a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1747a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1748a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1749a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1750a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1751a30f8f8cSSatish Balay submatrix (same for all local rows) 1752a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 17536d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 17546d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 17556d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1756a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1757a30f8f8cSSatish Balay submatrix (same for all local rows). 1758a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1759a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1760a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1761a30f8f8cSSatish Balay 1762a30f8f8cSSatish Balay Output Parameter: 1763a30f8f8cSSatish Balay . A - the matrix 1764a30f8f8cSSatish Balay 1765a30f8f8cSSatish Balay Options Database Keys: 1766a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1767a30f8f8cSSatish Balay block calculations (much slower) 1768a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1769a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1770a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1771a30f8f8cSSatish Balay 1772a30f8f8cSSatish Balay Notes: 1773d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1774d1be2dadSMatthew Knepley 1775a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1776a30f8f8cSSatish Balay (possibly both). 1777a30f8f8cSSatish Balay 1778a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1779a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1780a30f8f8cSSatish Balay 178149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 178249a6f317SBarry Smith 1783a30f8f8cSSatish Balay Storage Information: 1784a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1785a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1786a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1787a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1788a30f8f8cSSatish Balay 1789a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1790a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1791a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1792a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1793a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1794a30f8f8cSSatish Balay 1795a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1796a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1797a30f8f8cSSatish Balay 1798a30f8f8cSSatish Balay .vb 1799a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1800a30f8f8cSSatish Balay ------------------- 1801a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1802a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1803a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1804a30f8f8cSSatish Balay ------------------- 1805a30f8f8cSSatish Balay .ve 1806a30f8f8cSSatish Balay 1807a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1808a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 18096d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18106d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1811a30f8f8cSSatish Balay 18126d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18136d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1814a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1815a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1816a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1817a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1818a30f8f8cSSatish Balay matrices. 1819a30f8f8cSSatish Balay 1820a30f8f8cSSatish Balay Level: intermediate 1821a30f8f8cSSatish Balay 1822a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1823a30f8f8cSSatish Balay 1824a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1825a30f8f8cSSatish Balay @*/ 1826a30f8f8cSSatish Balay 1827be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1828a30f8f8cSSatish Balay { 18296849ba73SBarry Smith PetscErrorCode ierr; 18301302d50aSBarry Smith PetscMPIInt size; 1831a30f8f8cSSatish Balay 1832a30f8f8cSSatish Balay PetscFunctionBegin; 1833f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1834f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1835273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1836273d9f13SBarry Smith if (size > 1) { 1837b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1838b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1839273d9f13SBarry Smith } else { 1840273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1841273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1842273d9f13SBarry Smith } 1843a30f8f8cSSatish Balay PetscFunctionReturn(0); 1844a30f8f8cSSatish Balay } 1845a30f8f8cSSatish Balay 1846a30f8f8cSSatish Balay 18474a2ae208SSatish Balay #undef __FUNCT__ 18484a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 18496849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1850a30f8f8cSSatish Balay { 1851a30f8f8cSSatish Balay Mat mat; 1852a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1853dfbe8321SBarry Smith PetscErrorCode ierr; 1854521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 1855387bc808SHong Zhang PetscScalar *array; 1856a30f8f8cSSatish Balay 1857a30f8f8cSSatish Balay PetscFunctionBegin; 1858a30f8f8cSSatish Balay *newmat = 0; 1859f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 1860f69a0ea3SMatthew Knepley ierr = MatSetSizes(mat,matin->m,matin->n,matin->M,matin->N);CHKERRQ(ierr); 1861be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 18621d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1863e1b6402fSHong Zhang 186482327fa8SHong Zhang mat->factor = matin->factor; 1865273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 186682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 18677fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 18687fff6886SHong Zhang 1869b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1870521d7252SBarry Smith mat->bs = matin->bs; 1871a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1872a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1873a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1874a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1875a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1876a30f8f8cSSatish Balay 1877a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1878a30f8f8cSSatish Balay a->rend = oldmat->rend; 1879a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1880a30f8f8cSSatish Balay a->cend = oldmat->cend; 1881a30f8f8cSSatish Balay a->size = oldmat->size; 1882a30f8f8cSSatish Balay a->rank = oldmat->rank; 1883a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1884a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1885a30f8f8cSSatish Balay a->rowindices = 0; 1886a30f8f8cSSatish Balay a->rowvalues = 0; 1887a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1888a30f8f8cSSatish Balay a->barray = 0; 1889a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1890a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1891a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1892a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1893a30f8f8cSSatish Balay 1894a30f8f8cSSatish Balay /* hash table stuff */ 1895a30f8f8cSSatish Balay a->ht = 0; 1896a30f8f8cSSatish Balay a->hd = 0; 1897a30f8f8cSSatish Balay a->ht_size = 0; 1898a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1899a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1900a30f8f8cSSatish Balay a->ht_total_ct = 0; 1901a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1902a30f8f8cSSatish Balay 19031302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 1904a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1905521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 1906a30f8f8cSSatish Balay if (oldmat->colmap) { 1907a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1908a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1909a30f8f8cSSatish Balay #else 19101302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 191152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 19121302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 1913a30f8f8cSSatish Balay #endif 1914a30f8f8cSSatish Balay } else a->colmap = 0; 1915387bc808SHong Zhang 1916a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 19171302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 191852e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 19191302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 1920a30f8f8cSSatish Balay } else a->garray = 0; 1921a30f8f8cSSatish Balay 1922a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 192352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 1924a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 192552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 192682327fa8SHong Zhang 192782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 192852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 192982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 193052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 1931387bc808SHong Zhang 1932387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 19331ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 1934387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 1935387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 19361ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 19371ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 1938387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 19391ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 194052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 194152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 194252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 194352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 194452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 1945387bc808SHong Zhang 1946387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 1947387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 1948387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 194952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 195082327fa8SHong Zhang 1951a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 195252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1953a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 195452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 1955b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1956a30f8f8cSSatish Balay *newmat = mat; 1957a30f8f8cSSatish Balay PetscFunctionReturn(0); 1958a30f8f8cSSatish Balay } 1959a30f8f8cSSatish Balay 1960a30f8f8cSSatish Balay #include "petscsys.h" 1961a30f8f8cSSatish Balay 19624a2ae208SSatish Balay #undef __FUNCT__ 19634a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 1964f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 1965a30f8f8cSSatish Balay { 1966a30f8f8cSSatish Balay Mat A; 19676849ba73SBarry Smith PetscErrorCode ierr; 196813f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 196987828ca2SBarry Smith PetscScalar *vals,*buf; 1970a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1971a30f8f8cSSatish Balay MPI_Status status; 1972*2fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 197313f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 1974*2fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 19751302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 19761302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 19771302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 197813f74950SBarry Smith int fd; 1979a30f8f8cSSatish Balay 1980a30f8f8cSSatish Balay PetscFunctionBegin; 1981b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1982a30f8f8cSSatish Balay 1983a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1984a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1985a30f8f8cSSatish Balay if (!rank) { 1986b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1987a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1988552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 1989a30f8f8cSSatish Balay if (header[3] < 0) { 199029bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 1991a30f8f8cSSatish Balay } 1992a30f8f8cSSatish Balay } 1993a30f8f8cSSatish Balay 1994a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 1995a30f8f8cSSatish Balay M = header[1]; N = header[2]; 1996a30f8f8cSSatish Balay 199729bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay /* 2000a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2001a30f8f8cSSatish Balay divisible by the blocksize 2002a30f8f8cSSatish Balay */ 2003a30f8f8cSSatish Balay Mbs = M/bs; 2004a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2005a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2006a30f8f8cSSatish Balay else Mbs++; 2007a30f8f8cSSatish Balay if (extra_rows &&!rank) { 200863ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr); 2009a30f8f8cSSatish Balay } 2010a30f8f8cSSatish Balay 2011a30f8f8cSSatish Balay /* determine ownership of all rows */ 2012a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2013a30f8f8cSSatish Balay m = mbs*bs; 2014a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2015a30f8f8cSSatish Balay browners = rowners + size + 1; 2016a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2017a30f8f8cSSatish Balay rowners[0] = 0; 2018a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2019a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2020a30f8f8cSSatish Balay rstart = rowners[rank]; 2021a30f8f8cSSatish Balay rend = rowners[rank+1]; 2022a30f8f8cSSatish Balay 2023a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 2024*2fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2025a30f8f8cSSatish Balay if (!rank) { 20261302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2027a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2028a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2029a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2030a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2031a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2032a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2033a30f8f8cSSatish Balay } else { 2034a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2035a30f8f8cSSatish Balay } 2036a30f8f8cSSatish Balay 20370222edb1SHong Zhang if (!rank) { /* procs[0] */ 2038a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 20391302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 20401302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2041a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2042a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2043a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2044a30f8f8cSSatish Balay } 2045a30f8f8cSSatish Balay } 2046a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2047a30f8f8cSSatish Balay 2048a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2049a30f8f8cSSatish Balay maxnz = 0; 2050a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2051a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2052a30f8f8cSSatish Balay } 20531302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2054a30f8f8cSSatish Balay 2055a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2056a30f8f8cSSatish Balay nz = procsnz[0]; 20571302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2058a30f8f8cSSatish Balay mycols = ibuf; 2059a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2060a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2061a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2062a30f8f8cSSatish Balay 2063a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2064a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2065a30f8f8cSSatish Balay nz = procsnz[i]; 2066a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2067a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2068a30f8f8cSSatish Balay } 2069a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2070a30f8f8cSSatish Balay if (size != 1) { 2071a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2072a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2073a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2074a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2075a30f8f8cSSatish Balay } 2076a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20770222edb1SHong Zhang } else { /* procs[i], i>0 */ 2078a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2079a30f8f8cSSatish Balay nz = 0; 2080a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2081a30f8f8cSSatish Balay nz += locrowlens[i]; 2082a30f8f8cSSatish Balay } 20831302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2084a30f8f8cSSatish Balay mycols = ibuf; 2085a30f8f8cSSatish Balay /* receive message of column indices*/ 2086a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2087a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 208829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2089a30f8f8cSSatish Balay } 2090a30f8f8cSSatish Balay 2091a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 20921302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2093a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 20941302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 20951302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2096a30f8f8cSSatish Balay masked1 = mask + Mbs; 2097a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2098a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2099a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2100a30f8f8cSSatish Balay dcount = 0; 2101a30f8f8cSSatish Balay odcount = 0; 2102a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2103a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2104a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21050222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2106a30f8f8cSSatish Balay if (!mask[tmp]) { 2107a30f8f8cSSatish Balay mask[tmp] = 1; 21080222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21090222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2110a30f8f8cSSatish Balay } 2111a30f8f8cSSatish Balay } 2112a30f8f8cSSatish Balay rowcount++; 2113a30f8f8cSSatish Balay } 2114a30f8f8cSSatish Balay 21150222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21160222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2117a30f8f8cSSatish Balay 2118a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2119a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2120a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2121a30f8f8cSSatish Balay } 2122a30f8f8cSSatish Balay 2123a30f8f8cSSatish Balay /* create our matrix */ 2124f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2125f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 212622191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 212722191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2128273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2129a30f8f8cSSatish Balay 2130a30f8f8cSSatish Balay if (!rank) { 213187828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2132a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2133a30f8f8cSSatish Balay nz = procsnz[0]; 2134a30f8f8cSSatish Balay vals = buf; 2135a30f8f8cSSatish Balay mycols = ibuf; 2136a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2137a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2138a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2139a30f8f8cSSatish Balay 2140a30f8f8cSSatish Balay /* insert into matrix */ 2141a30f8f8cSSatish Balay jj = rstart*bs; 2142a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21437e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2144a30f8f8cSSatish Balay mycols += locrowlens[i]; 2145a30f8f8cSSatish Balay vals += locrowlens[i]; 2146a30f8f8cSSatish Balay jj++; 2147a30f8f8cSSatish Balay } 21487e06b45fSHong Zhang 2149a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2150a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2151a30f8f8cSSatish Balay nz = procsnz[i]; 2152a30f8f8cSSatish Balay vals = buf; 2153a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2155a30f8f8cSSatish Balay } 2156a30f8f8cSSatish Balay /* the last proc */ 2157a30f8f8cSSatish Balay if (size != 1){ 2158a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2159a30f8f8cSSatish Balay vals = buf; 2160a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2162a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2163a30f8f8cSSatish Balay } 2164a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21657e06b45fSHong Zhang 2166a30f8f8cSSatish Balay } else { 2167a30f8f8cSSatish Balay /* receive numeric values */ 216887828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2169a30f8f8cSSatish Balay 2170a30f8f8cSSatish Balay /* receive message of values*/ 2171a30f8f8cSSatish Balay vals = buf; 2172a30f8f8cSSatish Balay mycols = ibuf; 2173a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2174a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 217529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2176a30f8f8cSSatish Balay 2177a30f8f8cSSatish Balay /* insert into matrix */ 2178a30f8f8cSSatish Balay jj = rstart*bs; 2179a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2180a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2181a30f8f8cSSatish Balay mycols += locrowlens[i]; 2182a30f8f8cSSatish Balay vals += locrowlens[i]; 2183a30f8f8cSSatish Balay jj++; 2184a30f8f8cSSatish Balay } 2185a30f8f8cSSatish Balay } 21867e06b45fSHong Zhang 2187a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2188a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2189a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2190a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2191a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2192a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2193a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 219522191285SKris Buschelman *newmat = A; 2196a30f8f8cSSatish Balay PetscFunctionReturn(0); 2197a30f8f8cSSatish Balay } 2198a30f8f8cSSatish Balay 21994a2ae208SSatish Balay #undef __FUNCT__ 22004a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2201dcf5cc72SBarry Smith /*XXXXX@ 2202a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2203a30f8f8cSSatish Balay 2204a30f8f8cSSatish Balay Input Parameters: 2205a30f8f8cSSatish Balay . mat - the matrix 2206a30f8f8cSSatish Balay . fact - factor 2207a30f8f8cSSatish Balay 2208a30f8f8cSSatish Balay Collective on Mat 2209a30f8f8cSSatish Balay 2210a30f8f8cSSatish Balay Level: advanced 2211a30f8f8cSSatish Balay 2212a30f8f8cSSatish Balay Notes: 2213a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2214a30f8f8cSSatish Balay 2215a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2216a30f8f8cSSatish Balay 2217a30f8f8cSSatish Balay .seealso: MatSetOption() 2218dcf5cc72SBarry Smith @XXXXX*/ 2219dcf5cc72SBarry Smith 222024d5174aSHong Zhang 22214a2ae208SSatish Balay #undef __FUNCT__ 22224a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2223dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 222424d5174aSHong Zhang { 222524d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2226f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2227ca54ac64SHong Zhang PetscReal atmp; 222887828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2229dfbe8321SBarry Smith PetscErrorCode ierr; 22301302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 22311302d50aSBarry Smith PetscMPIInt rank,size; 22321302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 223387828ca2SBarry Smith PetscScalar *va; 22348a1c53f2SBarry Smith MatScalar *ba; 2235f4c0e9e4SHong Zhang MPI_Status stat; 223624d5174aSHong Zhang 223724d5174aSHong Zhang PetscFunctionBegin; 2238d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 22391ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2240f4c0e9e4SHong Zhang 224156faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 224256faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2243f4c0e9e4SHong Zhang 2244521d7252SBarry Smith bs = A->bs; 2245f4c0e9e4SHong Zhang mbs = a->mbs; 2246f4c0e9e4SHong Zhang Mbs = a->Mbs; 2247f4c0e9e4SHong Zhang ba = b->a; 2248f4c0e9e4SHong Zhang bi = b->i; 2249f4c0e9e4SHong Zhang bj = b->j; 2250f4c0e9e4SHong Zhang 2251f4c0e9e4SHong Zhang /* find ownerships */ 2252f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2253f4c0e9e4SHong Zhang 2254f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 225582502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2256ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2257f4c0e9e4SHong Zhang 2258f4c0e9e4SHong Zhang /* row_max for B */ 2259b8475685SHong Zhang if (rank != size-1){ 2260f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2261f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2262f4c0e9e4SHong Zhang brow = bs*i; 2263f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2264f4c0e9e4SHong Zhang bcol = bs*(*bj); 2265f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2266ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 226704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2268f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2269f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2270ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2271ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2272f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2273f4c0e9e4SHong Zhang } 2274f4c0e9e4SHong Zhang } 2275f4c0e9e4SHong Zhang bj++; 2276f4c0e9e4SHong Zhang } 2277f4c0e9e4SHong Zhang } 2278f4c0e9e4SHong Zhang 2279f4c0e9e4SHong Zhang /* send values to its owners */ 2280f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2281f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2282ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 228356faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2284ca54ac64SHong Zhang } 2285f4c0e9e4SHong Zhang } 2286f4c0e9e4SHong Zhang 2287f4c0e9e4SHong Zhang /* receive values */ 2288ca54ac64SHong Zhang if (rank){ 2289f4c0e9e4SHong Zhang rvalues = work; 2290ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2291f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 229256faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2293f4c0e9e4SHong Zhang /* process values */ 2294f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2295ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2296f4c0e9e4SHong Zhang } 2297f4c0e9e4SHong Zhang } 2298ca54ac64SHong Zhang } 2299f4c0e9e4SHong Zhang 23001ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2301ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 230224d5174aSHong Zhang PetscFunctionReturn(0); 230324d5174aSHong Zhang } 23042798e883SHong Zhang 23052798e883SHong Zhang #undef __FUNCT__ 23062798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 23071302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 23082798e883SHong Zhang { 23092798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2310dfbe8321SBarry Smith PetscErrorCode ierr; 2311521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2312efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2313ffe4fb16SHong Zhang Vec bb1; 2314ffe4fb16SHong Zhang 2315ffe4fb16SHong Zhang PetscFunctionBegin; 231677431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2317ffe4fb16SHong Zhang if (bs > 1) 2318ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2319ffe4fb16SHong Zhang 2320ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2321ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2322ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2323ffe4fb16SHong Zhang its--; 2324ffe4fb16SHong Zhang } 2325ffe4fb16SHong Zhang 2326ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2327ffe4fb16SHong Zhang while (its--){ 2328ffe4fb16SHong Zhang 2329ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2330ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2331ffe4fb16SHong Zhang 2332ffe4fb16SHong Zhang /* copy xx into slvec0a */ 23331ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 23341ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2335ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 23361ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2337ffe4fb16SHong Zhang 2338efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2339ffe4fb16SHong Zhang 2340ffe4fb16SHong Zhang /* copy bb into slvec1a */ 23411ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 23421ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2343ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 23441ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2345ffe4fb16SHong Zhang 2346ffe4fb16SHong Zhang /* set slvec1b = 0 */ 23472dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2348ffe4fb16SHong Zhang 2349ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 23501ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 23511ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2352ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2353ffe4fb16SHong Zhang 2354ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2355ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2356ffe4fb16SHong Zhang 2357ffe4fb16SHong Zhang /* local diagonal sweep */ 2358ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2359ffe4fb16SHong Zhang } 2360ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2361ffe4fb16SHong Zhang } else { 2362ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2363ffe4fb16SHong Zhang } 2364ffe4fb16SHong Zhang PetscFunctionReturn(0); 2365ffe4fb16SHong Zhang } 2366ffe4fb16SHong Zhang 2367ffe4fb16SHong Zhang #undef __FUNCT__ 2368ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 23691302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2370ffe4fb16SHong Zhang { 2371ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2372dfbe8321SBarry Smith PetscErrorCode ierr; 23732798e883SHong Zhang Vec lvec1,bb1; 23742798e883SHong Zhang 23752798e883SHong Zhang PetscFunctionBegin; 237677431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2377521d7252SBarry Smith if (matin->bs > 1) 23782798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 23792798e883SHong Zhang 2380c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 23812798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2382bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 23832798e883SHong Zhang its--; 23842798e883SHong Zhang } 23852798e883SHong Zhang 23862798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 23872798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 23882798e883SHong Zhang while (its--){ 23892798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 23902798e883SHong Zhang 23912798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 23922798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2393efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 23942798e883SHong Zhang 23952798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 23962798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 23972798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 23982798e883SHong Zhang 23992798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2400efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 24012798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 24022798e883SHong Zhang 24032798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24042798e883SHong Zhang 2405c14dc6b6SHong Zhang /* diagonal sweep */ 2406bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 24072798e883SHong Zhang } 24082798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 24092798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2410c14dc6b6SHong Zhang } else { 2411c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2412c14dc6b6SHong Zhang } 24132798e883SHong Zhang PetscFunctionReturn(0); 24142798e883SHong Zhang } 24152798e883SHong Zhang 2416