xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 36032a979dcb28c0d1539a209ef0cc043175b1eb)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
226214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
236214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
246214f412SHong Zhang #endif
25a30f8f8cSSatish Balay 
264a2ae208SSatish Balay #undef __FUNCT__
274a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
287087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
29a30f8f8cSSatish Balay {
30f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
31dfbe8321SBarry Smith   PetscErrorCode ierr;
32a30f8f8cSSatish Balay 
33a30f8f8cSSatish Balay   PetscFunctionBegin;
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
36a30f8f8cSSatish Balay   PetscFunctionReturn(0);
37a30f8f8cSSatish Balay }
38a30f8f8cSSatish Balay 
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
417087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
53a30f8f8cSSatish Balay   { \
54a30f8f8cSSatish Balay  \
55a30f8f8cSSatish Balay     brow = row/bs;  \
56a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
57a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
58a30f8f8cSSatish Balay     bcol = col/bs; \
59a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
60a30f8f8cSSatish Balay     low  = 0; high = nrow; \
61a30f8f8cSSatish Balay     while (high-low > 3) { \
62a30f8f8cSSatish Balay       t = (low+high)/2; \
63a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
64a30f8f8cSSatish Balay       else              low  = t; \
65a30f8f8cSSatish Balay     } \
66a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
67a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
68a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
69a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
70a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
71a30f8f8cSSatish Balay         else                    *bap  = value;  \
72a30f8f8cSSatish Balay         goto a_noinsert; \
73a30f8f8cSSatish Balay       } \
74a30f8f8cSSatish Balay     } \
75a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
76e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
77fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
78a30f8f8cSSatish Balay     N = nrow++ - 1;  \
79a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
80a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
81a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
82a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
83a30f8f8cSSatish Balay     } \
84a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
85a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
86a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
87e56f5c9eSBarry Smith     A->nonzerostate++;\
88a30f8f8cSSatish Balay a_noinsert:; \
89a30f8f8cSSatish Balay     ailen[brow] = nrow; \
90a30f8f8cSSatish Balay   }
91e5e170daSBarry Smith 
92a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
93a30f8f8cSSatish Balay   { \
94a30f8f8cSSatish Balay     brow = row/bs;  \
95a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
96a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
97a30f8f8cSSatish Balay     bcol = col/bs; \
98a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
99a30f8f8cSSatish Balay     low  = 0; high = nrow; \
100a30f8f8cSSatish Balay     while (high-low > 3) { \
101a30f8f8cSSatish Balay       t = (low+high)/2; \
102a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
103a30f8f8cSSatish Balay       else              low  = t; \
104a30f8f8cSSatish Balay     } \
105a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
106a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
107a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
108a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
109a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
110a30f8f8cSSatish Balay         else                    *bap  = value;  \
111a30f8f8cSSatish Balay         goto b_noinsert; \
112a30f8f8cSSatish Balay       } \
113a30f8f8cSSatish Balay     } \
114a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
115e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
116fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
117a30f8f8cSSatish Balay     N = nrow++ - 1;  \
118a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
119a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
120a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
121a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
122a30f8f8cSSatish Balay     } \
123a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
124a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
125a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
126e56f5c9eSBarry Smith     B->nonzerostate++;\
127a30f8f8cSSatish Balay b_noinsert:; \
128a30f8f8cSSatish Balay     bilen[brow] = nrow; \
129a30f8f8cSSatish Balay   }
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
132a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
133a30f8f8cSSatish Balay */
1344a2ae208SSatish Balay #undef __FUNCT__
135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
137a30f8f8cSSatish Balay {
138a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
139a30f8f8cSSatish Balay   MatScalar      value;
140ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
1421302d50aSBarry Smith   PetscInt       i,j,row,col;
143d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
144d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
145d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   /* Some Variables required in the macro */
148a30f8f8cSSatish Balay   Mat          A     = baij->A;
149a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1501302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
151a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
152a30f8f8cSSatish Balay 
153a30f8f8cSSatish Balay   Mat         B     = baij->B;
154a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1551302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
156a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
157a30f8f8cSSatish Balay 
1581302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1591302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
160a30f8f8cSSatish Balay   MatScalar *ap,*bap;
161a30f8f8cSSatish Balay 
162a30f8f8cSSatish Balay   /* for stash */
1630298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1640298fd71SBarry Smith   MatScalar *v_loc = NULL;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
167a30f8f8cSSatish Balay   if (!baij->donotstash) {
16859ffdab8SBarry Smith     if (n > baij->n_loc) {
16959ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17059ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
171785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
172785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
17326fbe8dcSKarl Rupp 
17459ffdab8SBarry Smith       baij->n_loc = n;
17559ffdab8SBarry Smith     }
17659ffdab8SBarry Smith     in_loc = baij->in_loc;
17759ffdab8SBarry Smith     v_loc  = baij->v_loc;
178a30f8f8cSSatish Balay   }
179a30f8f8cSSatish Balay 
180a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
181a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
183e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
184a30f8f8cSSatish Balay #endif
185a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
186a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
187a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18801b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
18901b2bd88SHong Zhang           if (a->ignore_ltriangular) {
19001b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19126fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19201b2bd88SHong Zhang         }
193a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
194a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
195a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
196a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
197db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
198db4deed7SKarl Rupp           else             value = v[i+j*m];
199a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
200a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
201a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
203cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
204a30f8f8cSSatish Balay #endif
205a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
206a30f8f8cSSatish Balay           if (mat->was_assembled) {
207a30f8f8cSSatish Balay             if (!baij->colmap) {
208ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
209a30f8f8cSSatish Balay             }
210a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
211a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21271730473SSatish Balay             col  = col - 1;
213a30f8f8cSSatish Balay #else
21471730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
215a30f8f8cSSatish Balay #endif
216a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
217ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
218a30f8f8cSSatish Balay               col  =  in[j];
219a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
220a30f8f8cSSatish Balay               B    = baij->B;
221a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
222a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
223a30f8f8cSSatish Balay               ba   = b->a;
22471730473SSatish Balay             } else col += in[j]%bs;
225a30f8f8cSSatish Balay           } else col = in[j];
226db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
227db4deed7SKarl Rupp           else             value = v[i+j*m];
228a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
229a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
230a30f8f8cSSatish Balay         }
231a30f8f8cSSatish Balay       }
232a30f8f8cSSatish Balay     } else {  /* off processor entry */
2334cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
234a30f8f8cSSatish Balay       if (!baij->donotstash) {
2355080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
236a30f8f8cSSatish Balay         n_loc          = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
261ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if (!barray) {
269785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
281e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
286f3f98c53SJed Brown         if (im[i] > in[j]) {
287f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
288e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
289f3f98c53SJed Brown         }
2900880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2910880e062SHong Zhang         if ((roworiented) && (n == 1)) {
292f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2930880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
294f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2950880e062SHong Zhang         } else { /* Here a copy is required */
2960880e062SHong Zhang           if (roworiented) {
2970880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2980880e062SHong Zhang           } else {
2990880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3000880e062SHong Zhang           }
3010880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3020880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3030880e062SHong Zhang               *barray++ = *value++;
3040880e062SHong Zhang             }
3050880e062SHong Zhang           }
3060880e062SHong Zhang           barray -=bs2;
3070880e062SHong Zhang         }
3080880e062SHong Zhang 
3090880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
3100880e062SHong Zhang           col  = in[j] - cstart;
3110880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
31226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
314cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3150880e062SHong Zhang #endif
3160880e062SHong Zhang         else {
3170880e062SHong Zhang           if (mat->was_assembled) {
3180880e062SHong Zhang             if (!baij->colmap) {
319ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3200880e062SHong Zhang             }
3210880e062SHong Zhang 
3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3230880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3241302d50aSBarry Smith             { PetscInt data;
3250880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
326e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang             }
3280880e062SHong Zhang #else
329e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3300880e062SHong Zhang #endif
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3330880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3340880e062SHong Zhang             col  = (col - 1)/bs;
3350880e062SHong Zhang #else
3360880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3370880e062SHong Zhang #endif
3380880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
339ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3400880e062SHong Zhang               col  = in[j];
3410880e062SHong Zhang             }
34226fbe8dcSKarl Rupp           } else col = in[j];
343e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3440880e062SHong Zhang         }
3450880e062SHong Zhang       }
3460880e062SHong Zhang     } else {
3474cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3480880e062SHong Zhang       if (!baij->donotstash) {
3490880e062SHong Zhang         if (roworiented) {
3500880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3510880e062SHong Zhang         } else {
3520880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         }
3540880e062SHong Zhang       }
3550880e062SHong Zhang     }
3560880e062SHong Zhang   }
3570880e062SHong Zhang   PetscFunctionReturn(0);
358a30f8f8cSSatish Balay }
359a30f8f8cSSatish Balay 
3604a2ae208SSatish Balay #undef __FUNCT__
3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
363a30f8f8cSSatish Balay {
364f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3656849ba73SBarry Smith   PetscErrorCode ierr;
366d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
367d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
368a30f8f8cSSatish Balay 
369a30f8f8cSSatish Balay   PetscFunctionBegin;
370a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
371e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
372e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
373a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
374a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
375a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
376e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
377e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
378a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
379a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
380c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
381a30f8f8cSSatish Balay         } else {
382a30f8f8cSSatish Balay           if (!baij->colmap) {
383ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           }
385a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
386a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
387a30f8f8cSSatish Balay           data--;
388a30f8f8cSSatish Balay #else
389a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
390a30f8f8cSSatish Balay #endif
391a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
392a30f8f8cSSatish Balay           else {
393a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
394e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
395a30f8f8cSSatish Balay           }
396a30f8f8cSSatish Balay         }
397a30f8f8cSSatish Balay       }
398f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
399a30f8f8cSSatish Balay   }
400a30f8f8cSSatish Balay   PetscFunctionReturn(0);
401a30f8f8cSSatish Balay }
402a30f8f8cSSatish Balay 
4034a2ae208SSatish Balay #undef __FUNCT__
4044a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
405dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
406a30f8f8cSSatish Balay {
407a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
408dfbe8321SBarry Smith   PetscErrorCode ierr;
409a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
410a30f8f8cSSatish Balay 
411a30f8f8cSSatish Balay   PetscFunctionBegin;
412a30f8f8cSSatish Balay   if (baij->size == 1) {
413a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
414a30f8f8cSSatish Balay   } else {
415a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
416785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
418a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
419a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
421ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4228f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
423a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
4240b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4250b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4260b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4270b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
428899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
429d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4300b8dc8d2SHong Zhang       MatScalar    *v;
4310b8dc8d2SHong Zhang 
432dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
433d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4340b8dc8d2SHong Zhang       /* Amat */
4350b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4360b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4370b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4380b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
4390b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4400b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4410b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4420b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4430b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4440b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4450b8dc8d2SHong Zhang               /* non-diagonal block */
4460b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4470b8dc8d2SHong Zhang             }
4480b8dc8d2SHong Zhang           }
4490b8dc8d2SHong Zhang         }
4500b8dc8d2SHong Zhang       }
4510b8dc8d2SHong Zhang       /* Bmat */
4520b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4530b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4540b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4550b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4560b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4570b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4580b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4590b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4600b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4610b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4620b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4630b8dc8d2SHong Zhang             }
4640b8dc8d2SHong Zhang           }
4650b8dc8d2SHong Zhang         }
4660b8dc8d2SHong Zhang       }
467ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4680b8dc8d2SHong Zhang       *norm = 0.0;
469d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4700b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4710b8dc8d2SHong Zhang       }
47274ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
473f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
474a30f8f8cSSatish Balay   }
475a30f8f8cSSatish Balay   PetscFunctionReturn(0);
476a30f8f8cSSatish Balay }
477a30f8f8cSSatish Balay 
4784a2ae208SSatish Balay #undef __FUNCT__
4794a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
480dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
481a30f8f8cSSatish Balay {
482a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
483dfbe8321SBarry Smith   PetscErrorCode ierr;
4841302d50aSBarry Smith   PetscInt       nstash,reallocs;
485a30f8f8cSSatish Balay   InsertMode     addv;
486a30f8f8cSSatish Balay 
487a30f8f8cSSatish Balay   PetscFunctionBegin;
48826fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
489a30f8f8cSSatish Balay 
490a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
491ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
492ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
493a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
494a30f8f8cSSatish Balay 
495d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
4961e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
497a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4981e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
499a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5001e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
501a30f8f8cSSatish Balay   PetscFunctionReturn(0);
502a30f8f8cSSatish Balay }
503a30f8f8cSSatish Balay 
5044a2ae208SSatish Balay #undef __FUNCT__
5054a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
506dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
507a30f8f8cSSatish Balay {
508a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
509a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
5106849ba73SBarry Smith   PetscErrorCode ierr;
51113f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
512e44c0bd4SBarry Smith   PetscInt       *row,*col;
513ace3abfcSBarry Smith   PetscBool      other_disassembled;
51413f74950SBarry Smith   PetscMPIInt    n;
515ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
516a30f8f8cSSatish Balay   MatScalar      *val;
517a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
518a30f8f8cSSatish Balay 
51991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
520a30f8f8cSSatish Balay   PetscFunctionBegin;
5214cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
522a30f8f8cSSatish Balay     while (1) {
523a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
524a30f8f8cSSatish Balay       if (!flg) break;
525a30f8f8cSSatish Balay 
526a30f8f8cSSatish Balay       for (i=0; i<n;) {
527a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
52826fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
52926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
53026fbe8dcSKarl Rupp         }
531a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
532a30f8f8cSSatish Balay         else       ncols = n-i;
533a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
534dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
535a30f8f8cSSatish Balay         i    = j;
536a30f8f8cSSatish Balay       }
537a30f8f8cSSatish Balay     }
538a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
539a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
540a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
541a30f8f8cSSatish Balay        restore the original flags */
542a30f8f8cSSatish Balay     r1 = baij->roworiented;
543a30f8f8cSSatish Balay     r2 = a->roworiented;
54491c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
54526fbe8dcSKarl Rupp 
546a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
547a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
54826fbe8dcSKarl Rupp 
54991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
550a30f8f8cSSatish Balay     while (1) {
551a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
552a30f8f8cSSatish Balay       if (!flg) break;
553a30f8f8cSSatish Balay 
554a30f8f8cSSatish Balay       for (i=0; i<n;) {
555a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
55626fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
55726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
55826fbe8dcSKarl Rupp         }
559a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
560a30f8f8cSSatish Balay         else       ncols = n-i;
561dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
562a30f8f8cSSatish Balay         i    = j;
563a30f8f8cSSatish Balay       }
564a30f8f8cSSatish Balay     }
565a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
56626fbe8dcSKarl Rupp 
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56926fbe8dcSKarl Rupp 
57091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
571a30f8f8cSSatish Balay   }
572a30f8f8cSSatish Balay 
573a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay 
576a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
577a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
578a30f8f8cSSatish Balay   /*
579a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
580a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
581a30f8f8cSSatish Balay   */
582a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
583ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
584a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
585ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
586a30f8f8cSSatish Balay     }
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay 
589a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
591a30f8f8cSSatish Balay   }
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
59574ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
59626fbe8dcSKarl Rupp 
597a30f8f8cSSatish Balay   baij->rowvalues = 0;
5984f9cfa9eSBarry Smith 
5994f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
6004f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
601e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
60209e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
603e56f5c9eSBarry Smith   }
604a30f8f8cSSatish Balay   PetscFunctionReturn(0);
605a30f8f8cSSatish Balay }
606a30f8f8cSSatish Balay 
6077da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
608dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6099804daf3SBarry Smith #include <petscdraw.h>
6104a2ae208SSatish Balay #undef __FUNCT__
6114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6126849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
613a30f8f8cSSatish Balay {
614a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
615dfbe8321SBarry Smith   PetscErrorCode    ierr;
616d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
6177da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
618ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
619b0a32e0cSBarry Smith   PetscViewer       sviewer;
620f3ef73ceSBarry Smith   PetscViewerFormat format;
621a30f8f8cSSatish Balay 
622a30f8f8cSSatish Balay   PetscFunctionBegin;
623251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
624251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
62532077d6dSBarry Smith   if (iascii) {
626b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
627456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
628a30f8f8cSSatish Balay       MatInfo info;
629ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
630a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6317b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6327b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
634e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
635a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
636e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
637b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6387b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63907d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
640a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
641a30f8f8cSSatish Balay       PetscFunctionReturn(0);
642fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
64377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
644a30f8f8cSSatish Balay       PetscFunctionReturn(0);
645c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
646c1490034SHong Zhang       PetscFunctionReturn(0);
647a30f8f8cSSatish Balay     }
648a30f8f8cSSatish Balay   }
649a30f8f8cSSatish Balay 
650a30f8f8cSSatish Balay   if (isdraw) {
651b0a32e0cSBarry Smith     PetscDraw draw;
652ace3abfcSBarry Smith     PetscBool isnull;
653b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
654b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
655a30f8f8cSSatish Balay   }
656a30f8f8cSSatish Balay 
6577da1fb6eSBarry Smith   {
658a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
659a30f8f8cSSatish Balay     Mat          A;
66065d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
66165d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
662d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
663a30f8f8cSSatish Balay     MatScalar    *a;
6643e219373SBarry Smith     const char   *matname;
665a30f8f8cSSatish Balay 
666f204ca49SKris Buschelman     /* Should this be the same type as mat? */
667ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     if (!rank) {
669f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
670a30f8f8cSSatish Balay     } else {
671f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
672a30f8f8cSSatish Balay     }
673f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
6740298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
6752b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
6763bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay     /* copy over the A part */
67965d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
680a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
681785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
682a30f8f8cSSatish Balay 
683a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
684e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
68526fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
686a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
687e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
688a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
689dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
69026fbe8dcSKarl Rupp           col++;
69126fbe8dcSKarl Rupp           a += bs;
692a30f8f8cSSatish Balay         }
693a30f8f8cSSatish Balay       }
694a30f8f8cSSatish Balay     }
695a30f8f8cSSatish Balay     /* copy over the B part */
69665d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69765d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
698a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
699e9f7bc9eSHong Zhang 
700e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
70126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
702a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
703a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
704a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
705799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
70626fbe8dcSKarl Rupp           col++;
70726fbe8dcSKarl Rupp           a += bs;
708a30f8f8cSSatish Balay         }
709a30f8f8cSSatish Balay       }
710a30f8f8cSSatish Balay     }
711a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
712a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
714a30f8f8cSSatish Balay     /*
715a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
716b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
717a30f8f8cSSatish Balay     */
718b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
719ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
7203e219373SBarry Smith     if (!rank) {
721ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
7227da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
723a30f8f8cSSatish Balay     }
724b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7256bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
726a30f8f8cSSatish Balay   }
727a30f8f8cSSatish Balay   PetscFunctionReturn(0);
728a30f8f8cSSatish Balay }
729a30f8f8cSSatish Balay 
7304a2ae208SSatish Balay #undef __FUNCT__
7314a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
732dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
733a30f8f8cSSatish Balay {
734dfbe8321SBarry Smith   PetscErrorCode ierr;
735ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
736a30f8f8cSSatish Balay 
737a30f8f8cSSatish Balay   PetscFunctionBegin;
738251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
739251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
740251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
741251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
74232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
743a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
744a30f8f8cSSatish Balay   }
745a30f8f8cSSatish Balay   PetscFunctionReturn(0);
746a30f8f8cSSatish Balay }
747a30f8f8cSSatish Balay 
7484a2ae208SSatish Balay #undef __FUNCT__
7494a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
750dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
751a30f8f8cSSatish Balay {
752a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
753dfbe8321SBarry Smith   PetscErrorCode ierr;
754a30f8f8cSSatish Balay 
755a30f8f8cSSatish Balay   PetscFunctionBegin;
756a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
757d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
758a30f8f8cSSatish Balay #endif
759a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
760a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7616bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7626bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
763a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
7646bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
765a30f8f8cSSatish Balay #else
76605b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
767a30f8f8cSSatish Balay #endif
76805b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7726bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7736bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7746bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7756bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7766bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7775755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77805b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77905b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7806bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7816bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7826bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
783ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
78405b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
785a30f8f8cSSatish Balay #endif
78659ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78759ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
788899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
789bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
790901853e0SKris Buschelman 
791dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
792bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
793bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
794bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
795bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
796bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
7976214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
7986214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
7996214f412SHong Zhang #endif
800a30f8f8cSSatish Balay   PetscFunctionReturn(0);
801a30f8f8cSSatish Balay }
802a30f8f8cSSatish Balay 
8034a2ae208SSatish Balay #undef __FUNCT__
804547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
805547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
806547795f9SHong Zhang {
807547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
808547795f9SHong Zhang   PetscErrorCode ierr;
809547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
810547795f9SHong Zhang   PetscScalar    *x,*from;
811547795f9SHong Zhang 
812547795f9SHong Zhang   PetscFunctionBegin;
813547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
814e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
815547795f9SHong Zhang 
816547795f9SHong Zhang   /* diagonal part */
817547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
818547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
819547795f9SHong Zhang 
820547795f9SHong Zhang   /* subdiagonal part */
821547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
822547795f9SHong Zhang 
823547795f9SHong Zhang   /* copy x into the vec slvec0 */
824547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
825547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
826547795f9SHong Zhang 
827547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
828547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
829547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
830547795f9SHong Zhang 
831547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
832547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
833547795f9SHong Zhang   /* supperdiagonal part */
834547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
835547795f9SHong Zhang   PetscFunctionReturn(0);
836547795f9SHong Zhang }
837547795f9SHong Zhang 
838547795f9SHong Zhang #undef __FUNCT__
839a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
840dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
841a9d4b620SHong Zhang {
842a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
843dfbe8321SBarry Smith   PetscErrorCode    ierr;
844d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
845d9ca1df4SBarry Smith   PetscScalar       *from;
846d9ca1df4SBarry Smith   const PetscScalar *x;
847a9d4b620SHong Zhang 
848a9d4b620SHong Zhang   PetscFunctionBegin;
849a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
850e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
851a9d4b620SHong Zhang 
852a9d4b620SHong Zhang   /* diagonal part */
853a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
854fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
855a9d4b620SHong Zhang 
856a9d4b620SHong Zhang   /* subdiagonal part */
857a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
858fc165ae2SBarry Smith 
859a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8601ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
861d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
862a9d4b620SHong Zhang 
863fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
864fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
865d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
866fc165ae2SBarry Smith 
867fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
868ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
869a9d4b620SHong Zhang   /* supperdiagonal part */
870a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
871a9d4b620SHong Zhang   PetscFunctionReturn(0);
872a9d4b620SHong Zhang }
873a9d4b620SHong Zhang 
874a9d4b620SHong Zhang #undef __FUNCT__
87540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
876dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
877a30f8f8cSSatish Balay {
878a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
879dfbe8321SBarry Smith   PetscErrorCode ierr;
8801302d50aSBarry Smith   PetscInt       nt;
881a30f8f8cSSatish Balay 
882a30f8f8cSSatish Balay   PetscFunctionBegin;
883a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
884e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
885e7e72b3dSBarry Smith 
886a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
887e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88865d70643SHong Zhang 
889ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
890b941877fSHong Zhang   /* do diagonal part */
891b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
892b941877fSHong Zhang   /* do supperdiagonal part */
893ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
894b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
895b941877fSHong Zhang   /* do subdiagonal part */
896b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
897ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
898ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
899a30f8f8cSSatish Balay   PetscFunctionReturn(0);
900a30f8f8cSSatish Balay }
901a30f8f8cSSatish Balay 
9024a2ae208SSatish Balay #undef __FUNCT__
9034a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
904dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
905a30f8f8cSSatish Balay {
906de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
907dfbe8321SBarry Smith   PetscErrorCode    ierr;
908d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
909d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
910d9ca1df4SBarry Smith   const PetscScalar *x;
911a9d4b620SHong Zhang 
912a9d4b620SHong Zhang   PetscFunctionBegin;
913a9d4b620SHong Zhang   /*
914ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
9150ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
916a9d4b620SHong Zhang   */
917a9d4b620SHong Zhang   /* diagonal part */
918a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9192dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
920a9d4b620SHong Zhang 
921a9d4b620SHong Zhang   /* subdiagonal part */
922a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
923a9d4b620SHong Zhang 
924a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9251ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
926d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
927a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9281ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
929a9d4b620SHong Zhang 
930ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
931d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
932ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
933a9d4b620SHong Zhang 
934a9d4b620SHong Zhang   /* supperdiagonal part */
935a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
936a9d4b620SHong Zhang   PetscFunctionReturn(0);
937a9d4b620SHong Zhang }
938a9d4b620SHong Zhang 
939a9d4b620SHong Zhang #undef __FUNCT__
940a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
941dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
942a9d4b620SHong Zhang {
943a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
944dfbe8321SBarry Smith   PetscErrorCode ierr;
945a30f8f8cSSatish Balay 
946a30f8f8cSSatish Balay   PetscFunctionBegin;
947ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
948b941877fSHong Zhang   /* do diagonal part */
949b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
950b941877fSHong Zhang   /* do supperdiagonal part */
951ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
952de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
953de8b6608SHong Zhang 
954b941877fSHong Zhang   /* do subdiagonal part */
955a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
956ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
957ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
958a30f8f8cSSatish Balay   PetscFunctionReturn(0);
959a30f8f8cSSatish Balay }
960a30f8f8cSSatish Balay 
961a30f8f8cSSatish Balay /*
962a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
963a30f8f8cSSatish Balay    diagonal block
964a30f8f8cSSatish Balay */
9654a2ae208SSatish Balay #undef __FUNCT__
9664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
967dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
968a30f8f8cSSatish Balay {
969a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
970dfbe8321SBarry Smith   PetscErrorCode ierr;
971a30f8f8cSSatish Balay 
972a30f8f8cSSatish Balay   PetscFunctionBegin;
973e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
974a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
975a30f8f8cSSatish Balay   PetscFunctionReturn(0);
976a30f8f8cSSatish Balay }
977a30f8f8cSSatish Balay 
9784a2ae208SSatish Balay #undef __FUNCT__
9794a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
980f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
981a30f8f8cSSatish Balay {
982a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
983dfbe8321SBarry Smith   PetscErrorCode ierr;
984a30f8f8cSSatish Balay 
985a30f8f8cSSatish Balay   PetscFunctionBegin;
986f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
987f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
988a30f8f8cSSatish Balay   PetscFunctionReturn(0);
989a30f8f8cSSatish Balay }
990a30f8f8cSSatish Balay 
9914a2ae208SSatish Balay #undef __FUNCT__
9924a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9931302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
994a30f8f8cSSatish Balay {
995d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
996d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
997d0d4cfc2SHong Zhang   PetscErrorCode ierr;
998d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
999d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1000899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1001d0d4cfc2SHong Zhang 
1002a30f8f8cSSatish Balay   PetscFunctionBegin;
1003e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1004d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1005d0d4cfc2SHong Zhang 
1006d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1007d0d4cfc2SHong Zhang     /*
1008d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1009d0d4cfc2SHong Zhang     */
1010d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1011d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1012d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1013d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1014d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
101526fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1016d0d4cfc2SHong Zhang     }
1017dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1018d0d4cfc2SHong Zhang   }
1019d0d4cfc2SHong Zhang 
1020e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1021d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1022d0d4cfc2SHong Zhang 
1023d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1024d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1025d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1026d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1027d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1028d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1029d0d4cfc2SHong Zhang 
1030d0d4cfc2SHong Zhang   cmap = mat->garray;
1031d0d4cfc2SHong Zhang   if (v  || idx) {
1032d0d4cfc2SHong Zhang     if (nztot) {
1033d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1034d0d4cfc2SHong Zhang       PetscInt imark = -1;
1035d0d4cfc2SHong Zhang       if (v) {
1036d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1037d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1038d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1039d0d4cfc2SHong Zhang           else break;
1040d0d4cfc2SHong Zhang         }
1041d0d4cfc2SHong Zhang         imark = i;
1042d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1043d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1044d0d4cfc2SHong Zhang       }
1045d0d4cfc2SHong Zhang       if (idx) {
1046d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1047d0d4cfc2SHong Zhang         if (imark > -1) {
1048d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1049d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1050d0d4cfc2SHong Zhang           }
1051d0d4cfc2SHong Zhang         } else {
1052d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
105326fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1054d0d4cfc2SHong Zhang             else break;
1055d0d4cfc2SHong Zhang           }
1056d0d4cfc2SHong Zhang           imark = i;
1057d0d4cfc2SHong Zhang         }
1058d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1059d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1060d0d4cfc2SHong Zhang       }
1061d0d4cfc2SHong Zhang     } else {
1062d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1063d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1064d0d4cfc2SHong Zhang     }
1065d0d4cfc2SHong Zhang   }
1066d0d4cfc2SHong Zhang   *nz  = nztot;
1067d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1068d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1069a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1070a30f8f8cSSatish Balay }
1071a30f8f8cSSatish Balay 
10724a2ae208SSatish Balay #undef __FUNCT__
10734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10741302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1075a30f8f8cSSatish Balay {
1076a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1077a30f8f8cSSatish Balay 
1078a30f8f8cSSatish Balay   PetscFunctionBegin;
1079e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1080a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1081a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1082a30f8f8cSSatish Balay }
1083a30f8f8cSSatish Balay 
10844a2ae208SSatish Balay #undef __FUNCT__
1085d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1086d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1087d0d4cfc2SHong Zhang {
1088d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1089d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1090d0d4cfc2SHong Zhang 
1091d0d4cfc2SHong Zhang   PetscFunctionBegin;
1092d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1093d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1094d0d4cfc2SHong Zhang }
1095d0d4cfc2SHong Zhang #undef __FUNCT__
1096d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1097d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1098d0d4cfc2SHong Zhang {
1099d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1100d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1101d0d4cfc2SHong Zhang 
1102d0d4cfc2SHong Zhang   PetscFunctionBegin;
1103d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1104d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1105d0d4cfc2SHong Zhang }
1106d0d4cfc2SHong Zhang 
1107d0d4cfc2SHong Zhang #undef __FUNCT__
110899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
111099cafbc1SBarry Smith {
111199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111299cafbc1SBarry Smith   PetscErrorCode ierr;
111399cafbc1SBarry Smith 
111499cafbc1SBarry Smith   PetscFunctionBegin;
111599cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111699cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111799cafbc1SBarry Smith   PetscFunctionReturn(0);
111899cafbc1SBarry Smith }
111999cafbc1SBarry Smith 
112099cafbc1SBarry Smith #undef __FUNCT__
112199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112399cafbc1SBarry Smith {
112499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112599cafbc1SBarry Smith   PetscErrorCode ierr;
112699cafbc1SBarry Smith 
112799cafbc1SBarry Smith   PetscFunctionBegin;
112899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
113099cafbc1SBarry Smith   PetscFunctionReturn(0);
113199cafbc1SBarry Smith }
113299cafbc1SBarry Smith 
1133*36032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ()
1134*36032a97SHong Zhang    Input: isrow       - distributed(parallel),
1135*36032a97SHong Zhang           iscol_local - locally owned (seq)
1136*36032a97SHong Zhang */
113799cafbc1SBarry Smith #undef __FUNCT__
1138*36032a97SHong Zhang #define __FUNCT__ "ISEqual_private"
1139*36032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
11408f46ffcaSHong Zhang {
11418f46ffcaSHong Zhang   PetscErrorCode ierr;
11428f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
11438f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
1144*36032a97SHong Zhang 
1145*36032a97SHong Zhang   PetscFunctionBegin;
11468f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
11478f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
1148*36032a97SHong Zhang   if (sz1 > sz2) *flg = PETSC_FALSE;
11498f46ffcaSHong Zhang 
11508f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
11518f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
11528f46ffcaSHong Zhang 
11538f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
11548f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
11558f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
11568f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
11578f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
11588f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
11598f46ffcaSHong Zhang 
11608f46ffcaSHong Zhang   nmatch=0;
11618f46ffcaSHong Zhang   k     = 0;
11628f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
11638f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
11648f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
11658f46ffcaSHong Zhang         k = j; nmatch++;
11668f46ffcaSHong Zhang         break;
11678f46ffcaSHong Zhang       }
11688f46ffcaSHong Zhang     }
11698f46ffcaSHong Zhang   }
11708f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
11718f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
11728f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
11738f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
1174*36032a97SHong Zhang   if (nmatch < sz1) *flg = PETSC_FALSE;
1175*36032a97SHong Zhang   PetscFunctionReturn(0);
11768f46ffcaSHong Zhang }
1177*36032a97SHong Zhang 
1178*36032a97SHong Zhang #undef __FUNCT__
1179*36032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
1180*36032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
1181*36032a97SHong Zhang {
1182*36032a97SHong Zhang   PetscErrorCode ierr;
1183*36032a97SHong Zhang   IS             iscol_local;
1184*36032a97SHong Zhang   PetscInt       csize;
1185*36032a97SHong Zhang   PetscBool      isequal;
1186*36032a97SHong Zhang 
1187*36032a97SHong Zhang   PetscFunctionBegin;
1188*36032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1189*36032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
1190*36032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1191*36032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1192*36032a97SHong Zhang   } else {
1193*36032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1194*36032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
1195*36032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
11968f46ffcaSHong Zhang   }
11978f46ffcaSHong Zhang 
11988f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
1199*36032a97SHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
12008f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
12018f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
12028f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
12038f46ffcaSHong Zhang   }
12048f46ffcaSHong Zhang   PetscFunctionReturn(0);
12058f46ffcaSHong Zhang }
12068f46ffcaSHong Zhang 
12078f46ffcaSHong Zhang #undef __FUNCT__
12084a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1209dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1210a30f8f8cSSatish Balay {
1211a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1212dfbe8321SBarry Smith   PetscErrorCode ierr;
1213a30f8f8cSSatish Balay 
1214a30f8f8cSSatish Balay   PetscFunctionBegin;
1215a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1216a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1217a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1218a30f8f8cSSatish Balay }
1219a30f8f8cSSatish Balay 
12204a2ae208SSatish Balay #undef __FUNCT__
12214a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1222dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1223a30f8f8cSSatish Balay {
1224a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1225a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1226dfbe8321SBarry Smith   PetscErrorCode ierr;
1227a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1228a30f8f8cSSatish Balay 
1229a30f8f8cSSatish Balay   PetscFunctionBegin;
1230d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
123126fbe8dcSKarl Rupp 
1232a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
123326fbe8dcSKarl Rupp 
1234a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1235a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
123626fbe8dcSKarl Rupp 
1237a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
123826fbe8dcSKarl Rupp 
1239a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1240a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1241a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1242a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1243a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1244a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1245a30f8f8cSSatish Balay     info->memory       = isend[3];
1246a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1247a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1248ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
124926fbe8dcSKarl Rupp 
1250a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1251a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1252a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1253a30f8f8cSSatish Balay     info->memory       = irecv[3];
1254a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1255a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1256ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
125726fbe8dcSKarl Rupp 
1258a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1259a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1260a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1261a30f8f8cSSatish Balay     info->memory       = irecv[3];
1262a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1263f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1264a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1265a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1266a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1267a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1268a30f8f8cSSatish Balay }
1269a30f8f8cSSatish Balay 
12704a2ae208SSatish Balay #undef __FUNCT__
12714a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1272ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1273a30f8f8cSSatish Balay {
1274a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1275d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1276dfbe8321SBarry Smith   PetscErrorCode ierr;
1277a30f8f8cSSatish Balay 
1278a30f8f8cSSatish Balay   PetscFunctionBegin;
1279e98b92d7SKris Buschelman   switch (op) {
1280512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1281e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
128228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1283a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1284e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12854e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12864e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1287e98b92d7SKris Buschelman     break;
1288e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12894e0d8c25SBarry Smith     a->roworiented = flg;
129026fbe8dcSKarl Rupp 
12914e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12924e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1293e98b92d7SKris Buschelman     break;
12944e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1295290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1296e98b92d7SKris Buschelman     break;
1297e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12984e0d8c25SBarry Smith     a->donotstash = flg;
1299e98b92d7SKris Buschelman     break;
1300e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
13014e0d8c25SBarry Smith     a->ht_flag = flg;
1302e98b92d7SKris Buschelman     break;
13039a4540c5SBarry Smith   case MAT_HERMITIAN:
1304e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1305eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
130626fbe8dcSKarl Rupp 
1307547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1308eeffb40dSHong Zhang     break;
1309ffa07934SHong Zhang   case MAT_SPD:
1310ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1311ffa07934SHong Zhang     A->spd     = flg;
1312ffa07934SHong Zhang     if (flg) {
1313ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1314ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1315ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1316ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1317ffa07934SHong Zhang     }
1318ffa07934SHong Zhang     break;
131977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1320eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1321eeffb40dSHong Zhang     break;
132277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1323eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1324eeffb40dSHong Zhang     break;
13259a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1326e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1327290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
132877e54ba9SKris Buschelman     break;
1329d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
13304e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1331d0d4cfc2SHong Zhang     break;
1332d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
13334e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1334d0d4cfc2SHong Zhang     break;
1335d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
13364e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1337d0d4cfc2SHong Zhang     break;
1338e98b92d7SKris Buschelman   default:
1339e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1340a30f8f8cSSatish Balay   }
1341a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1342a30f8f8cSSatish Balay }
1343a30f8f8cSSatish Balay 
13444a2ae208SSatish Balay #undef __FUNCT__
13458115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1346fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1347a30f8f8cSSatish Balay {
1348dfbe8321SBarry Smith   PetscErrorCode ierr;
13496e111a19SKarl Rupp 
1350a30f8f8cSSatish Balay   PetscFunctionBegin;
1351815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1352999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1353fc4dec0aSBarry Smith   }
13548115998fSBarry Smith   PetscFunctionReturn(0);
1355a30f8f8cSSatish Balay }
1356a30f8f8cSSatish Balay 
13574a2ae208SSatish Balay #undef __FUNCT__
13584a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1359dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1360a30f8f8cSSatish Balay {
1361a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1362a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1363dfbe8321SBarry Smith   PetscErrorCode ierr;
13645e90f9d9SHong Zhang   PetscInt       nv,m,n;
1365ace3abfcSBarry Smith   PetscBool      flg;
1366a30f8f8cSSatish Balay 
1367a30f8f8cSSatish Balay   PetscFunctionBegin;
1368a30f8f8cSSatish Balay   if (ll != rr) {
1369b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1370e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1371a30f8f8cSSatish Balay   }
1372b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1373b3bf805bSHong Zhang 
13745e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1375e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1376b3bf805bSHong Zhang 
13775e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1378e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13795e90f9d9SHong Zhang 
1380ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13815e90f9d9SHong Zhang 
13825e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
13830298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
13845e90f9d9SHong Zhang 
13855e90f9d9SHong Zhang   /* scale the diagonal part */
1386a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1387a30f8f8cSSatish Balay 
13885e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1389ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13900298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1391a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1392a30f8f8cSSatish Balay }
1393a30f8f8cSSatish Balay 
13944a2ae208SSatish Balay #undef __FUNCT__
13954a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1396dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1397a30f8f8cSSatish Balay {
1398f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1399dfbe8321SBarry Smith   PetscErrorCode ierr;
1400a30f8f8cSSatish Balay 
1401a30f8f8cSSatish Balay   PetscFunctionBegin;
1402a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1403a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1404a30f8f8cSSatish Balay }
1405a30f8f8cSSatish Balay 
14066849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1407a30f8f8cSSatish Balay 
14084a2ae208SSatish Balay #undef __FUNCT__
14094a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1410ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1411a30f8f8cSSatish Balay {
1412a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1413a30f8f8cSSatish Balay   Mat            a,b,c,d;
1414ace3abfcSBarry Smith   PetscBool      flg;
1415dfbe8321SBarry Smith   PetscErrorCode ierr;
1416a30f8f8cSSatish Balay 
1417a30f8f8cSSatish Balay   PetscFunctionBegin;
1418a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1419a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1420a30f8f8cSSatish Balay 
1421a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1422abc0a331SBarry Smith   if (flg) {
1423a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1424a30f8f8cSSatish Balay   }
1425ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1426a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1427a30f8f8cSSatish Balay }
1428a30f8f8cSSatish Balay 
14294a2ae208SSatish Balay #undef __FUNCT__
14303c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
14313c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
14323c896bc6SHong Zhang {
14333c896bc6SHong Zhang   PetscErrorCode ierr;
14343c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14353c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
14363c896bc6SHong Zhang 
14373c896bc6SHong Zhang   PetscFunctionBegin;
14383c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
14393c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1440d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
14413c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1442d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
14433c896bc6SHong Zhang   } else {
14443c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
14453c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
14463c896bc6SHong Zhang   }
14473c896bc6SHong Zhang   PetscFunctionReturn(0);
14483c896bc6SHong Zhang }
14493c896bc6SHong Zhang 
14503c896bc6SHong Zhang #undef __FUNCT__
14514994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
14524994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1453273d9f13SBarry Smith {
1454dfbe8321SBarry Smith   PetscErrorCode ierr;
1455273d9f13SBarry Smith 
1456273d9f13SBarry Smith   PetscFunctionBegin;
1457535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1458273d9f13SBarry Smith   PetscFunctionReturn(0);
1459273d9f13SBarry Smith }
1460a5e6ed63SBarry Smith 
14614fe895cdSHong Zhang #undef __FUNCT__
14624fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14634fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14644fe895cdSHong Zhang {
14654fe895cdSHong Zhang   PetscErrorCode ierr;
14664fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
14674fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14684fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14694fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14704fe895cdSHong Zhang 
14714fe895cdSHong Zhang   PetscFunctionBegin;
14724fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14734fe895cdSHong Zhang     PetscScalar alpha = a;
14744fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
14754fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1476c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
14778b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
14784fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
14794fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1480c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
14818b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1482a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1483ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1484ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1485ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1486ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
14874fe895cdSHong Zhang   } else {
14884de5dceeSHong Zhang     Mat      B;
14894de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
14904de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1491d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14924de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
14934de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
14944de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
14954de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
14964de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
14974de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
14984de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
14994de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
15004de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
15014de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
15024de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
15034de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
15044de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
15054de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
15064de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1507d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
15084de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
15094fe895cdSHong Zhang   }
15104fe895cdSHong Zhang   PetscFunctionReturn(0);
15114fe895cdSHong Zhang }
15124fe895cdSHong Zhang 
1513a5e6ed63SBarry Smith #undef __FUNCT__
1514a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
15151302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1516a5e6ed63SBarry Smith {
15176849ba73SBarry Smith   PetscErrorCode ierr;
15181302d50aSBarry Smith   PetscInt       i;
1519ace3abfcSBarry Smith   PetscBool      flg;
1520a5e6ed63SBarry Smith 
15216849ba73SBarry Smith   PetscFunctionBegin;
15224dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1523a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1524a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
15254dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
15264dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1527a5e6ed63SBarry Smith     }
15284dcd73b1SHong Zhang   }
1529a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1530a5e6ed63SBarry Smith }
1531a5e6ed63SBarry Smith 
1532a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
15333964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1534a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1535a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1536a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
153797304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1538431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1539431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1540a30f8f8cSSatish Balay                                        0,
1541a30f8f8cSSatish Balay                                        0,
1542a30f8f8cSSatish Balay                                        0,
154397304618SKris Buschelman                                /* 10*/ 0,
1544a30f8f8cSSatish Balay                                        0,
1545a30f8f8cSSatish Balay                                        0,
154641f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1547a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
154897304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1549a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1550a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1551a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1552a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
155397304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1554a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1555a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1556a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1557d519adbfSMatthew Knepley                                /* 24*/ 0,
1558a30f8f8cSSatish Balay                                        0,
1559a30f8f8cSSatish Balay                                        0,
1560a30f8f8cSSatish Balay                                        0,
1561a30f8f8cSSatish Balay                                        0,
15624994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1563b5df2d14SHong Zhang                                        0,
1564a30f8f8cSSatish Balay                                        0,
1565a30f8f8cSSatish Balay                                        0,
1566a30f8f8cSSatish Balay                                        0,
1567d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1568a30f8f8cSSatish Balay                                        0,
1569a30f8f8cSSatish Balay                                        0,
1570a30f8f8cSSatish Balay                                        0,
1571a30f8f8cSSatish Balay                                        0,
1572d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1573a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1574d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1575a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
15763c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1577d519adbfSMatthew Knepley                                /* 44*/ 0,
1578a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1579a30f8f8cSSatish Balay                                        0,
1580a30f8f8cSSatish Balay                                        0,
1581a30f8f8cSSatish Balay                                        0,
1582f73d5cc4SBarry Smith                                /* 49*/ 0,
1583a30f8f8cSSatish Balay                                        0,
1584a30f8f8cSSatish Balay                                        0,
1585a30f8f8cSSatish Balay                                        0,
1586a30f8f8cSSatish Balay                                        0,
1587d519adbfSMatthew Knepley                                /* 54*/ 0,
1588a30f8f8cSSatish Balay                                        0,
1589a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1590a30f8f8cSSatish Balay                                        0,
1591a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
15928f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
1593a30f8f8cSSatish Balay                                        0,
1594a30f8f8cSSatish Balay                                        0,
1595357abbc8SBarry Smith                                        0,
159624d5174aSHong Zhang                                        0,
1597d519adbfSMatthew Knepley                                /* 64*/ 0,
159824d5174aSHong Zhang                                        0,
159924d5174aSHong Zhang                                        0,
160024d5174aSHong Zhang                                        0,
160124d5174aSHong Zhang                                        0,
1602d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
160324d5174aSHong Zhang                                        0,
160497304618SKris Buschelman                                        0,
160597304618SKris Buschelman                                        0,
160697304618SKris Buschelman                                        0,
1607d519adbfSMatthew Knepley                                /* 74*/ 0,
160897304618SKris Buschelman                                        0,
160997304618SKris Buschelman                                        0,
161097304618SKris Buschelman                                        0,
161197304618SKris Buschelman                                        0,
1612d519adbfSMatthew Knepley                                /* 79*/ 0,
161397304618SKris Buschelman                                        0,
161497304618SKris Buschelman                                        0,
161597304618SKris Buschelman                                        0,
16165bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1617d519adbfSMatthew Knepley                                /* 84*/ 0,
1618865e5f61SKris Buschelman                                        0,
1619865e5f61SKris Buschelman                                        0,
1620865e5f61SKris Buschelman                                        0,
1621865e5f61SKris Buschelman                                        0,
1622d519adbfSMatthew Knepley                                /* 89*/ 0,
1623865e5f61SKris Buschelman                                        0,
1624865e5f61SKris Buschelman                                        0,
1625865e5f61SKris Buschelman                                        0,
1626865e5f61SKris Buschelman                                        0,
1627d519adbfSMatthew Knepley                                /* 94*/ 0,
1628865e5f61SKris Buschelman                                        0,
1629865e5f61SKris Buschelman                                        0,
163099cafbc1SBarry Smith                                        0,
163199cafbc1SBarry Smith                                        0,
1632d519adbfSMatthew Knepley                                /* 99*/ 0,
163399cafbc1SBarry Smith                                        0,
163499cafbc1SBarry Smith                                        0,
163599cafbc1SBarry Smith                                        0,
163699cafbc1SBarry Smith                                        0,
1637d519adbfSMatthew Knepley                                /*104*/ 0,
163899cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1639d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1640d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
164195936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
164295936485SShri Abhyankar                                /*109*/ 0,
164395936485SShri Abhyankar                                        0,
164495936485SShri Abhyankar                                        0,
164595936485SShri Abhyankar                                        0,
164695936485SShri Abhyankar                                        0,
164795936485SShri Abhyankar                                /*114*/ 0,
164895936485SShri Abhyankar                                        0,
164995936485SShri Abhyankar                                        0,
165095936485SShri Abhyankar                                        0,
165195936485SShri Abhyankar                                        0,
165295936485SShri Abhyankar                                /*119*/ 0,
165395936485SShri Abhyankar                                        0,
165495936485SShri Abhyankar                                        0,
16553964eb88SJed Brown                                        0,
16563964eb88SJed Brown                                        0,
16573964eb88SJed Brown                                /*124*/ 0,
16583964eb88SJed Brown                                        0,
16593964eb88SJed Brown                                        0,
16603964eb88SJed Brown                                        0,
16613964eb88SJed Brown                                        0,
16623964eb88SJed Brown                                /*129*/ 0,
16633964eb88SJed Brown                                        0,
16643964eb88SJed Brown                                        0,
16653964eb88SJed Brown                                        0,
16663964eb88SJed Brown                                        0,
16673964eb88SJed Brown                                /*134*/ 0,
16683964eb88SJed Brown                                        0,
16693964eb88SJed Brown                                        0,
16703964eb88SJed Brown                                        0,
16713964eb88SJed Brown                                        0,
16723964eb88SJed Brown                                /*139*/ 0,
1673f9426fe0SMark Adams                                        0,
167459f5e6ceSHong Zhang                                        0,
167559f5e6ceSHong Zhang                                        0,
167659f5e6ceSHong Zhang                                        0,
167759f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
167899cafbc1SBarry Smith };
1679a30f8f8cSSatish Balay 
16804a2ae208SSatish Balay #undef __FUNCT__
16814a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
168211bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1683a30f8f8cSSatish Balay {
1684a30f8f8cSSatish Balay   PetscFunctionBegin;
1685a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1686a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1687a30f8f8cSSatish Balay }
1688a30f8f8cSSatish Balay 
16894a2ae208SSatish Balay #undef __FUNCT__
1690a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1691b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1692a23d5eceSKris Buschelman {
1693a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1694dfbe8321SBarry Smith   PetscErrorCode ierr;
1695535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1696a23d5eceSKris Buschelman 
1697a23d5eceSKris Buschelman   PetscFunctionBegin;
169833d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
169926283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
170026283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1701e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1702899cda47SBarry Smith 
1703a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1704d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1705d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1706c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1707a23d5eceSKris Buschelman 
1708d0f46423SBarry Smith   B->rmap->bs = bs;
1709a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1710a23d5eceSKris Buschelman   b->mbs      = mbs;
1711a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1712de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1713de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1714a23d5eceSKris Buschelman 
1715a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1716d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1717a23d5eceSKris Buschelman   }
1718d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1719d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1720a23d5eceSKris Buschelman 
1721d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1722d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1723a23d5eceSKris Buschelman 
1724526dfc15SBarry Smith   if (!B->preallocated) {
1725f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1726d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
17279c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
17283bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1729f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1730d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
17314aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
17323bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1733ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1734526dfc15SBarry Smith   }
1735a23d5eceSKris Buschelman 
1736526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1737526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
173826fbe8dcSKarl Rupp 
1739526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1740a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1741a23d5eceSKris Buschelman }
1742a23d5eceSKris Buschelman 
1743dfb205c3SBarry Smith #undef __FUNCT__
1744dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1745dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1746dfb205c3SBarry Smith {
1747dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1748dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1749dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1750dfb205c3SBarry Smith   PetscScalar    *values=0;
1751dfb205c3SBarry Smith   PetscErrorCode ierr;
1752dfb205c3SBarry Smith 
1753dfb205c3SBarry Smith   PetscFunctionBegin;
1754ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1755dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1756dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1757dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1758dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1759e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1760dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1761dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1762dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1763dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1764dfb205c3SBarry Smith 
1765dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1766dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1767dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1768dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1769dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1770dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1771dfb205c3SBarry Smith     JJ     = jj + ii[i];
1772dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1773dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1774dfb205c3SBarry Smith       JJ++;
1775dfb205c3SBarry Smith     }
1776dfb205c3SBarry Smith     d = 0;
1777dfb205c3SBarry Smith     for (; j<nz; j++) {
1778dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1779dfb205c3SBarry Smith       d++;
1780dfb205c3SBarry Smith     }
1781dfb205c3SBarry Smith     d_nnz[i] = d;
1782dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1783dfb205c3SBarry Smith   }
1784dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1785dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1786dfb205c3SBarry Smith 
1787dfb205c3SBarry Smith   values = (PetscScalar*)V;
1788dfb205c3SBarry Smith   if (!values) {
1789785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
1790dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1791dfb205c3SBarry Smith   }
1792dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1793dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1794dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1795dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1796dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1797dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1798dfb205c3SBarry Smith   }
1799dfb205c3SBarry Smith 
1800dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1801dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1802dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18037827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1804dfb205c3SBarry Smith   PetscFunctionReturn(0);
1805dfb205c3SBarry Smith }
1806dfb205c3SBarry Smith 
18070bad9183SKris Buschelman /*MC
1808fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1809828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1810828413b8SBarry Smith    the matrix is stored.
1811828413b8SBarry Smith 
1812828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1813828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
18140bad9183SKris Buschelman 
18150bad9183SKris Buschelman    Options Database Keys:
18160bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
18170bad9183SKris Buschelman 
18180bad9183SKris Buschelman   Level: beginner
18190bad9183SKris Buschelman 
18200bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
18210bad9183SKris Buschelman M*/
18220bad9183SKris Buschelman 
18238cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1824aa5a9175SDahai Guo 
1825a23d5eceSKris Buschelman #undef __FUNCT__
18264a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
18278cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1828b5df2d14SHong Zhang {
1829b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1830dfbe8321SBarry Smith   PetscErrorCode ierr;
183194ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
1832b5df2d14SHong Zhang 
1833b5df2d14SHong Zhang   PetscFunctionBegin;
1834b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
1835b0a32e0cSBarry Smith   B->data = (void*)b;
1836b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1837b5df2d14SHong Zhang 
1838b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
1839b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
1840b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
1841b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
184226fbe8dcSKarl Rupp 
1843ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
1844ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
1845b5df2d14SHong Zhang 
1846b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1847854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
1848b5df2d14SHong Zhang 
1849b5df2d14SHong Zhang   /* build cache for off array entries formed */
1850ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
185126fbe8dcSKarl Rupp 
1852b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
18530298fd71SBarry Smith   b->colmap      = NULL;
18540298fd71SBarry Smith   b->garray      = NULL;
1855b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1856b5df2d14SHong Zhang 
1857b5df2d14SHong Zhang   /* stuff used in block assembly */
1858b5df2d14SHong Zhang   b->barray = 0;
1859b5df2d14SHong Zhang 
1860b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1861b5df2d14SHong Zhang   b->lvec    = 0;
1862b5df2d14SHong Zhang   b->Mvctx   = 0;
186340781036SHong Zhang   b->slvec0  = 0;
186440781036SHong Zhang   b->slvec0b = 0;
186540781036SHong Zhang   b->slvec1  = 0;
186640781036SHong Zhang   b->slvec1a = 0;
186740781036SHong Zhang   b->slvec1b = 0;
186840781036SHong Zhang   b->sMvctx  = 0;
1869b5df2d14SHong Zhang 
1870b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1871b5df2d14SHong Zhang   b->rowindices   = 0;
1872b5df2d14SHong Zhang   b->rowvalues    = 0;
1873b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1874b5df2d14SHong Zhang 
1875b5df2d14SHong Zhang   /* hash table stuff */
1876b5df2d14SHong Zhang   b->ht           = 0;
1877b5df2d14SHong Zhang   b->hd           = 0;
1878b5df2d14SHong Zhang   b->ht_size      = 0;
1879b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1880b5df2d14SHong Zhang   b->ht_fact      = 0;
1881b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1882b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1883b5df2d14SHong Zhang 
18847a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
18857a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
18867a868f3eSHong Zhang 
188759ffdab8SBarry Smith   b->in_loc = 0;
188859ffdab8SBarry Smith   b->v_loc  = 0;
188959ffdab8SBarry Smith   b->n_loc  = 0;
189094ae4db5SBarry Smith 
1891bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1892bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1893bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1894bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1895bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1896bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
18976214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
18986214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
18996214f412SHong Zhang #endif
1900aa5a9175SDahai Guo 
190123ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
190223ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
190323ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
190423ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
190526fbe8dcSKarl Rupp 
190617667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
190794ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
190894ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
190994ae4db5SBarry Smith   if (flg) {
191094ae4db5SBarry Smith     PetscReal fact = 1.39;
191194ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
191294ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
191394ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
191494ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
191594ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
191694ae4db5SBarry Smith   }
191794ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1918b5df2d14SHong Zhang   PetscFunctionReturn(0);
1919b5df2d14SHong Zhang }
1920b5df2d14SHong Zhang 
1921209238afSKris Buschelman /*MC
1922002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1923209238afSKris Buschelman 
1924209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1925209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1926209238afSKris Buschelman 
1927209238afSKris Buschelman    Options Database Keys:
1928209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1929209238afSKris Buschelman 
1930209238afSKris Buschelman   Level: beginner
1931209238afSKris Buschelman 
1932209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1933209238afSKris Buschelman M*/
1934209238afSKris Buschelman 
19354a2ae208SSatish Balay #undef __FUNCT__
19364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1937b5df2d14SHong Zhang /*@C
1938b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1939b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1940b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1941b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1942b5df2d14SHong Zhang 
1943b5df2d14SHong Zhang    Collective on Mat
1944b5df2d14SHong Zhang 
1945b5df2d14SHong Zhang    Input Parameters:
19461c4f3114SJed Brown +  B - the matrix
1947bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1948bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1949b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1950b5df2d14SHong Zhang            submatrix  (same for all local rows)
1951b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
19526d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
19530298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
195495742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1955b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1956b5df2d14SHong Zhang            submatrix (same for all local rows).
1957b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1958c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
19590298fd71SBarry Smith            (possibly different for each block row) or NULL.
1960b5df2d14SHong Zhang 
1961b5df2d14SHong Zhang 
1962b5df2d14SHong Zhang    Options Database Keys:
1963b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1964b5df2d14SHong Zhang                      block calculations (much slower)
1965b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1966b5df2d14SHong Zhang 
1967b5df2d14SHong Zhang    Notes:
1968b5df2d14SHong Zhang 
1969b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1970b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1971b5df2d14SHong Zhang 
197249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
197349a6f317SBarry Smith 
1974b5df2d14SHong Zhang    Storage Information:
1975b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1976b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1977b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1978b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1979b5df2d14SHong Zhang 
1980b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1981b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
19820298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
1983b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1984b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1985b5df2d14SHong Zhang 
1986aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1987aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1988aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1989aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1990aa95bbe8SBarry Smith 
1991b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1992b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1993b5df2d14SHong Zhang 
1994b5df2d14SHong Zhang .vb
1995b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1996a4b1a0f6SJed Brown           --------------------------
1997c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
1998c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
1999c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2000a4b1a0f6SJed Brown           --------------------------
2001b5df2d14SHong Zhang .ve
2002b5df2d14SHong Zhang 
2003b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2004b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
20056d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20066d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2007b5df2d14SHong Zhang 
20086d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20096d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2010c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2011c2fc9fa9SBarry Smith 
2012b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2013b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2014b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2015b5df2d14SHong Zhang    matrices.
2016b5df2d14SHong Zhang 
2017b5df2d14SHong Zhang    Level: intermediate
2018b5df2d14SHong Zhang 
2019b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2020b5df2d14SHong Zhang 
2021ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2022b5df2d14SHong Zhang @*/
20237087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2024b5df2d14SHong Zhang {
20254ac538c5SBarry Smith   PetscErrorCode ierr;
2026b5df2d14SHong Zhang 
2027b5df2d14SHong Zhang   PetscFunctionBegin;
20286ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
20296ba663aaSJed Brown   PetscValidType(B,1);
20306ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
20314ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2032b5df2d14SHong Zhang   PetscFunctionReturn(0);
2033b5df2d14SHong Zhang }
2034b5df2d14SHong Zhang 
20354a2ae208SSatish Balay #undef __FUNCT__
203669b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2037a30f8f8cSSatish Balay /*@C
203869b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2039a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2040a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2041a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2042a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2043a30f8f8cSSatish Balay 
2044a30f8f8cSSatish Balay    Collective on MPI_Comm
2045a30f8f8cSSatish Balay 
2046a30f8f8cSSatish Balay    Input Parameters:
2047a30f8f8cSSatish Balay +  comm - MPI communicator
2048bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2049bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2050a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2051a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2052a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2053a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2054a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2055a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2056a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2057a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2058a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2059a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2060a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
20616d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
20620298fd71SBarry Smith            (possibly different for each block block row) or NULL.
206395742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
206495742e49SBarry Smith            set its value even if it is zero.
2065a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2066a30f8f8cSSatish Balay            submatrix (same for all local rows).
2067a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2068a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
20690298fd71SBarry Smith            each block row) or NULL.
2070a30f8f8cSSatish Balay 
2071a30f8f8cSSatish Balay    Output Parameter:
2072a30f8f8cSSatish Balay .  A - the matrix
2073a30f8f8cSSatish Balay 
2074a30f8f8cSSatish Balay    Options Database Keys:
2075a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2076a30f8f8cSSatish Balay                      block calculations (much slower)
2077a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2078a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2079a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2080a30f8f8cSSatish Balay 
2081175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2082ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2083175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2084175b88e8SBarry Smith 
2085a30f8f8cSSatish Balay    Notes:
2086d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20876d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2088d1be2dadSMatthew Knepley 
2089a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2090a30f8f8cSSatish Balay    (possibly both).
2091a30f8f8cSSatish Balay 
2092a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2093a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2094a30f8f8cSSatish Balay 
209549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
209649a6f317SBarry Smith 
2097a30f8f8cSSatish Balay    Storage Information:
2098a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2099a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2100a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2101a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2102a30f8f8cSSatish Balay 
2103a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2104a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
21050298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2106a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2107a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2108a30f8f8cSSatish Balay 
2109a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2110a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2111a30f8f8cSSatish Balay 
2112a30f8f8cSSatish Balay .vb
2113a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2114a4b1a0f6SJed Brown           --------------------------
2115c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2116c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2117c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2118a4b1a0f6SJed Brown           --------------------------
2119a30f8f8cSSatish Balay .ve
2120a30f8f8cSSatish Balay 
2121a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2122a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
21236d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
21246d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2125a30f8f8cSSatish Balay 
21266d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
21276d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2128a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2129a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2130a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2131a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2132a30f8f8cSSatish Balay    matrices.
2133a30f8f8cSSatish Balay 
2134a30f8f8cSSatish Balay    Level: intermediate
2135a30f8f8cSSatish Balay 
2136a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2137a30f8f8cSSatish Balay 
213869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2139a30f8f8cSSatish Balay @*/
2140a30f8f8cSSatish Balay 
214169b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2142a30f8f8cSSatish Balay {
21436849ba73SBarry Smith   PetscErrorCode ierr;
21441302d50aSBarry Smith   PetscMPIInt    size;
2145a30f8f8cSSatish Balay 
2146a30f8f8cSSatish Balay   PetscFunctionBegin;
2147f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2148f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2149273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2150273d9f13SBarry Smith   if (size > 1) {
2151b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2152b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2153273d9f13SBarry Smith   } else {
2154273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2155273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2156273d9f13SBarry Smith   }
2157a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2158a30f8f8cSSatish Balay }
2159a30f8f8cSSatish Balay 
2160a30f8f8cSSatish Balay 
21614a2ae208SSatish Balay #undef __FUNCT__
21624a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
21636849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2164a30f8f8cSSatish Balay {
2165a30f8f8cSSatish Balay   Mat            mat;
2166a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2167dfbe8321SBarry Smith   PetscErrorCode ierr;
2168d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2169387bc808SHong Zhang   PetscScalar    *array;
2170a30f8f8cSSatish Balay 
2171a30f8f8cSSatish Balay   PetscFunctionBegin;
2172a30f8f8cSSatish Balay   *newmat = 0;
217326fbe8dcSKarl Rupp 
2174ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2175d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
21767adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
21771d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
21781e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
21791e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2180e1b6402fSHong Zhang 
2181d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2182273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
218382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21847fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21857fff6886SHong Zhang 
2186b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2187a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2188a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2189a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2190a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2191a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2192a30f8f8cSSatish Balay 
2193899cda47SBarry Smith 
2194a30f8f8cSSatish Balay   a->size         = oldmat->size;
2195a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2196a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2197a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2198a30f8f8cSSatish Balay   a->rowindices   = 0;
2199a30f8f8cSSatish Balay   a->rowvalues    = 0;
2200a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2201a30f8f8cSSatish Balay   a->barray       = 0;
2202899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2203899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2204899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2205899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2206a30f8f8cSSatish Balay 
2207a30f8f8cSSatish Balay   /* hash table stuff */
2208a30f8f8cSSatish Balay   a->ht           = 0;
2209a30f8f8cSSatish Balay   a->hd           = 0;
2210a30f8f8cSSatish Balay   a->ht_size      = 0;
2211a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2212a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2213a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2214a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2215a30f8f8cSSatish Balay 
2216899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2217a30f8f8cSSatish Balay   if (oldmat->colmap) {
2218a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2219a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay #else
2221854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
22223bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
22231302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2224a30f8f8cSSatish Balay #endif
2225a30f8f8cSSatish Balay   } else a->colmap = 0;
2226387bc808SHong Zhang 
2227a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2228785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
22293bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
22301302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2231a30f8f8cSSatish Balay   } else a->garray = 0;
2232a30f8f8cSSatish Balay 
2233ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2234a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
22353bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2236a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
22373bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
223882327fa8SHong Zhang 
223982327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
22403bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
224182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
22423bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2243387bc808SHong Zhang 
2244387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
22451ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2246778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2247778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
22481ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
22491ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2250778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
22511ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
22523bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
22533bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
22543bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
22553bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
22563bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2257387bc808SHong Zhang 
2258387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2259387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2260387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
22613bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
226282327fa8SHong Zhang 
2263a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
22643bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
22663bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2267140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2268a30f8f8cSSatish Balay   *newmat = mat;
2269a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2270a30f8f8cSSatish Balay }
2271a30f8f8cSSatish Balay 
22724a2ae208SSatish Balay #undef __FUNCT__
22735bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2274112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
227595936485SShri Abhyankar {
227695936485SShri Abhyankar   PetscErrorCode ierr;
227795936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
227895936485SShri Abhyankar   PetscScalar    *vals,*buf;
2279ce94432eSBarry Smith   MPI_Comm       comm;
228095936485SShri Abhyankar   MPI_Status     status;
2281adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2282adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
228395936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
22843059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
228595936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
228695936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
228795936485SShri Abhyankar   int            fd;
228895936485SShri Abhyankar 
228995936485SShri Abhyankar   PetscFunctionBegin;
2290ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
22910298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
22920298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
229395936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
22943059b6faSBarry Smith   if (bs < 0) bs = 1;
229595936485SShri Abhyankar 
229695936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
229795936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
229895936485SShri Abhyankar   if (!rank) {
229995936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
230095936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
230195936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
230295936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
230395936485SShri Abhyankar   }
230495936485SShri Abhyankar 
230595936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
230695936485SShri Abhyankar 
230795936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
230826fbe8dcSKarl Rupp   M    = header[1];
230926fbe8dcSKarl Rupp   N    = header[2];
231095936485SShri Abhyankar 
231195936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
231295936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
231395936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
231495936485SShri Abhyankar 
231595936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
231695936485SShri Abhyankar   if (sizesset) {
231795936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
231895936485SShri Abhyankar   }
2319abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2320abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
232195936485SShri Abhyankar 
232295936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
232395936485SShri Abhyankar 
232495936485SShri Abhyankar   /*
232595936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
232695936485SShri Abhyankar      divisible by the blocksize
232795936485SShri Abhyankar   */
232895936485SShri Abhyankar   Mbs        = M/bs;
232995936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
233095936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
233195936485SShri Abhyankar   else                  Mbs++;
233295936485SShri Abhyankar   if (extra_rows &&!rank) {
233395936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
233495936485SShri Abhyankar   }
233595936485SShri Abhyankar 
233695936485SShri Abhyankar   /* determine ownership of all rows */
233795936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
233895936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
233995936485SShri Abhyankar     m   = mbs*bs;
234095936485SShri Abhyankar   } else { /* User Set */
234195936485SShri Abhyankar     m   = newmat->rmap->n;
234295936485SShri Abhyankar     mbs = m/bs;
234395936485SShri Abhyankar   }
2344dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
23454dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
234695936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
234795936485SShri Abhyankar   rowners[0] = 0;
234895936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
234995936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
235095936485SShri Abhyankar   rstart = rowners[rank];
235195936485SShri Abhyankar   rend   = rowners[rank+1];
235295936485SShri Abhyankar 
235395936485SShri Abhyankar   /* distribute row lengths to all processors */
2354785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
235595936485SShri Abhyankar   if (!rank) {
2356854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
235795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
235895936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2359785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
236095936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
236195936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
236295936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
236395936485SShri Abhyankar   } else {
236495936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
236595936485SShri Abhyankar   }
236695936485SShri Abhyankar 
236795936485SShri Abhyankar   if (!rank) {   /* procs[0] */
236895936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2369785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
237095936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
237195936485SShri Abhyankar     for (i=0; i<size; i++) {
237295936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
237395936485SShri Abhyankar         procsnz[i] += rowlengths[j];
237495936485SShri Abhyankar       }
237595936485SShri Abhyankar     }
237695936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
237795936485SShri Abhyankar 
237895936485SShri Abhyankar     /* determine max buffer needed and allocate it */
237995936485SShri Abhyankar     maxnz = 0;
238095936485SShri Abhyankar     for (i=0; i<size; i++) {
238195936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
238295936485SShri Abhyankar     }
2383785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
238495936485SShri Abhyankar 
238595936485SShri Abhyankar     /* read in my part of the matrix column indices  */
238695936485SShri Abhyankar     nz     = procsnz[0];
2387785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
238895936485SShri Abhyankar     mycols = ibuf;
238995936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
239095936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
239126fbe8dcSKarl Rupp     if (size == 1) {
239226fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
239326fbe8dcSKarl Rupp     }
239495936485SShri Abhyankar 
239595936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
239695936485SShri Abhyankar     for (i=1; i<size-1; i++) {
239795936485SShri Abhyankar       nz   = procsnz[i];
239895936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
239995936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
240095936485SShri Abhyankar     }
240195936485SShri Abhyankar     /* read in the stuff for the last proc */
240295936485SShri Abhyankar     if (size != 1) {
240395936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
240495936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
240595936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
240695936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
240795936485SShri Abhyankar     }
240895936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
240995936485SShri Abhyankar   } else {  /* procs[i], i>0 */
241095936485SShri Abhyankar     /* determine buffer space needed for message */
241195936485SShri Abhyankar     nz = 0;
241226fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2413785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
241495936485SShri Abhyankar     mycols = ibuf;
241595936485SShri Abhyankar     /* receive message of column indices*/
241695936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
241795936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
241895936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
241995936485SShri Abhyankar   }
242095936485SShri Abhyankar 
242195936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2422dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2423dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
242495936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
242595936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
242695936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
242795936485SShri Abhyankar   rowcount = 0;
242895936485SShri Abhyankar   nzcount  = 0;
242995936485SShri Abhyankar   for (i=0; i<mbs; i++) {
243095936485SShri Abhyankar     dcount  = 0;
243195936485SShri Abhyankar     odcount = 0;
243295936485SShri Abhyankar     for (j=0; j<bs; j++) {
243395936485SShri Abhyankar       kmax = locrowlens[rowcount];
243495936485SShri Abhyankar       for (k=0; k<kmax; k++) {
243595936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
243695936485SShri Abhyankar         if (!mask[tmp]) {
243795936485SShri Abhyankar           mask[tmp] = 1;
243895936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
243995936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
244095936485SShri Abhyankar         }
244195936485SShri Abhyankar       }
244295936485SShri Abhyankar       rowcount++;
244395936485SShri Abhyankar     }
244495936485SShri Abhyankar 
244595936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
244695936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
244795936485SShri Abhyankar 
244895936485SShri Abhyankar     /* zero out the mask elements we set */
244995936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
245095936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
245195936485SShri Abhyankar   }
245295936485SShri Abhyankar   if (!sizesset) {
245395936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
245495936485SShri Abhyankar   }
245595936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
24566816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
245795936485SShri Abhyankar 
245895936485SShri Abhyankar   if (!rank) {
2459785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
246095936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
246195936485SShri Abhyankar     nz     = procsnz[0];
246295936485SShri Abhyankar     vals   = buf;
246395936485SShri Abhyankar     mycols = ibuf;
246495936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
246595936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
246626fbe8dcSKarl Rupp     if (size == 1) {
246726fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
246826fbe8dcSKarl Rupp     }
246995936485SShri Abhyankar 
247095936485SShri Abhyankar     /* insert into matrix */
247195936485SShri Abhyankar     jj = rstart*bs;
247295936485SShri Abhyankar     for (i=0; i<m; i++) {
247395936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
247495936485SShri Abhyankar       mycols += locrowlens[i];
247595936485SShri Abhyankar       vals   += locrowlens[i];
247695936485SShri Abhyankar       jj++;
247795936485SShri Abhyankar     }
247895936485SShri Abhyankar 
247995936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
248095936485SShri Abhyankar     for (i=1; i<size-1; i++) {
248195936485SShri Abhyankar       nz   = procsnz[i];
248295936485SShri Abhyankar       vals = buf;
248395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
248495936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
248595936485SShri Abhyankar     }
248695936485SShri Abhyankar     /* the last proc */
248795936485SShri Abhyankar     if (size != 1) {
248895936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
248995936485SShri Abhyankar       vals = buf;
249095936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
249195936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
249295936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
249395936485SShri Abhyankar     }
249495936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
249595936485SShri Abhyankar 
249695936485SShri Abhyankar   } else {
249795936485SShri Abhyankar     /* receive numeric values */
2498785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
249995936485SShri Abhyankar 
250095936485SShri Abhyankar     /* receive message of values*/
250195936485SShri Abhyankar     vals   = buf;
250295936485SShri Abhyankar     mycols = ibuf;
250395936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
250495936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
250595936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
250695936485SShri Abhyankar 
250795936485SShri Abhyankar     /* insert into matrix */
250895936485SShri Abhyankar     jj = rstart*bs;
250995936485SShri Abhyankar     for (i=0; i<m; i++) {
251095936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
251195936485SShri Abhyankar       mycols += locrowlens[i];
251295936485SShri Abhyankar       vals   += locrowlens[i];
251395936485SShri Abhyankar       jj++;
251495936485SShri Abhyankar     }
251595936485SShri Abhyankar   }
251695936485SShri Abhyankar 
251795936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
251895936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
251995936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
252095936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
252195936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
252295936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
252395936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
252495936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
252595936485SShri Abhyankar   PetscFunctionReturn(0);
252695936485SShri Abhyankar }
252795936485SShri Abhyankar 
252895936485SShri Abhyankar #undef __FUNCT__
25294a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2530dcf5cc72SBarry Smith /*XXXXX@
2531a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2532a30f8f8cSSatish Balay 
2533a30f8f8cSSatish Balay    Input Parameters:
2534a30f8f8cSSatish Balay .  mat  - the matrix
2535a30f8f8cSSatish Balay .  fact - factor
2536a30f8f8cSSatish Balay 
2537c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2538a30f8f8cSSatish Balay 
2539a30f8f8cSSatish Balay    Level: advanced
2540a30f8f8cSSatish Balay 
2541a30f8f8cSSatish Balay   Notes:
2542a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2543a30f8f8cSSatish Balay 
2544a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2545a30f8f8cSSatish Balay 
2546a30f8f8cSSatish Balay .seealso: MatSetOption()
2547dcf5cc72SBarry Smith @XXXXX*/
2548dcf5cc72SBarry Smith 
254924d5174aSHong Zhang 
25504a2ae208SSatish Balay #undef __FUNCT__
2551985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2552985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
255324d5174aSHong Zhang {
255424d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2555f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2556ca54ac64SHong Zhang   PetscReal      atmp;
255787828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2558dfbe8321SBarry Smith   PetscErrorCode ierr;
25591302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25601302d50aSBarry Smith   PetscMPIInt    rank,size;
25611302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
256287828ca2SBarry Smith   PetscScalar    *va;
25638a1c53f2SBarry Smith   MatScalar      *ba;
2564f4c0e9e4SHong Zhang   MPI_Status     stat;
256524d5174aSHong Zhang 
256624d5174aSHong Zhang   PetscFunctionBegin;
2567e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
25680298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
25691ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2570f4c0e9e4SHong Zhang 
2571ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2572ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2573f4c0e9e4SHong Zhang 
2574d0f46423SBarry Smith   bs  = A->rmap->bs;
2575f4c0e9e4SHong Zhang   mbs = a->mbs;
2576f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2577f4c0e9e4SHong Zhang   ba  = b->a;
2578f4c0e9e4SHong Zhang   bi  = b->i;
2579f4c0e9e4SHong Zhang   bj  = b->j;
2580f4c0e9e4SHong Zhang 
2581f4c0e9e4SHong Zhang   /* find ownerships */
2582d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2583f4c0e9e4SHong Zhang 
2584f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2585785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2586ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2587f4c0e9e4SHong Zhang 
2588f4c0e9e4SHong Zhang   /* row_max for B */
2589b8475685SHong Zhang   if (rank != size-1) {
2590f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2591f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2592f4c0e9e4SHong Zhang       brow  = bs*i;
2593f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2594f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2595f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2596ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
259704d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2598f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2599f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2600ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2601ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2602f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2603f4c0e9e4SHong Zhang           }
2604f4c0e9e4SHong Zhang         }
2605f4c0e9e4SHong Zhang         bj++;
2606f4c0e9e4SHong Zhang       }
2607f4c0e9e4SHong Zhang     }
2608f4c0e9e4SHong Zhang 
2609f4c0e9e4SHong Zhang     /* send values to its owners */
2610f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2611f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2612ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2613ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2614ca54ac64SHong Zhang     }
2615f4c0e9e4SHong Zhang   }
2616f4c0e9e4SHong Zhang 
2617f4c0e9e4SHong Zhang   /* receive values */
2618ca54ac64SHong Zhang   if (rank) {
2619f4c0e9e4SHong Zhang     rvalues = work;
2620ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2621f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2622ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2623f4c0e9e4SHong Zhang       /* process values */
2624f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2625ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2626f4c0e9e4SHong Zhang       }
2627f4c0e9e4SHong Zhang     }
2628ca54ac64SHong Zhang   }
2629f4c0e9e4SHong Zhang 
26301ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2631ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
263224d5174aSHong Zhang   PetscFunctionReturn(0);
263324d5174aSHong Zhang }
26342798e883SHong Zhang 
26352798e883SHong Zhang #undef __FUNCT__
263641f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
263741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
26382798e883SHong Zhang {
26392798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2640dfbe8321SBarry Smith   PetscErrorCode    ierr;
2641d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
26423649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2643ffe4fb16SHong Zhang   Vec               bb1;
26443649974fSBarry Smith   const PetscScalar *b;
2645ffe4fb16SHong Zhang 
2646ffe4fb16SHong Zhang   PetscFunctionBegin;
2647e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2648e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2649ffe4fb16SHong Zhang 
2650a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
265141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2652a2b30743SBarry Smith     PetscFunctionReturn(0);
2653a2b30743SBarry Smith   }
2654a2b30743SBarry Smith 
2655ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2656ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
265741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2658ffe4fb16SHong Zhang       its--;
2659ffe4fb16SHong Zhang     }
2660ffe4fb16SHong Zhang 
2661ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2662ffe4fb16SHong Zhang     while (its--) {
2663ffe4fb16SHong Zhang 
2664ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2665ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2666ffe4fb16SHong Zhang 
2667ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26681ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
26691ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2670ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26711ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2672ffe4fb16SHong Zhang 
2673efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2674ffe4fb16SHong Zhang 
2675ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26761ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
26773649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2678ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26791ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2680ffe4fb16SHong Zhang 
2681ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2682fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2683ffe4fb16SHong Zhang 
2684ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26851ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2686a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2687ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2688ffe4fb16SHong Zhang 
2689ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2690ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2691ffe4fb16SHong Zhang 
2692ffe4fb16SHong Zhang       /* local diagonal sweep */
269341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2694ffe4fb16SHong Zhang     }
26956bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2696fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
269741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2698fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
269941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2700fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2701fa22f6d0SBarry Smith     Vec               xx1;
2702ace3abfcSBarry Smith     PetscBool         hasop;
270320f1ed55SBarry Smith     const PetscScalar *diag;
2704887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
270520f1ed55SBarry Smith     PetscInt          i,n;
2706fa22f6d0SBarry Smith 
2707fa22f6d0SBarry Smith     if (!mat->xx1) {
2708fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2709fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2710fa22f6d0SBarry Smith     }
2711fa22f6d0SBarry Smith     xx1 = mat->xx1;
2712fa22f6d0SBarry Smith     bb1 = mat->bb1;
2713fa22f6d0SBarry Smith 
271441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2715fa22f6d0SBarry Smith 
2716fa22f6d0SBarry Smith     if (!mat->diag) {
2717effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27182a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2719fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2720fa22f6d0SBarry Smith     }
2721fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2722fa22f6d0SBarry Smith 
2723fa22f6d0SBarry Smith     if (hasop) {
2724fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2725887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
272620f1ed55SBarry Smith     } else {
272720f1ed55SBarry Smith       /*
272820f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
272920f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2730887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
273120f1ed55SBarry Smith       */
273220f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27333649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27343649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
273520f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
273620f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2737887ee2caSBarry Smith       if (omega == 1.0) {
273826fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
273920f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2740887ee2caSBarry Smith       } else {
274126fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2742887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2743887ee2caSBarry Smith       }
274420f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27453649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27463649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
274720f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
274820f1ed55SBarry Smith     }
2749fa22f6d0SBarry Smith 
2750fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2751fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2752fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2753fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2754fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2755fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2756fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2757fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2758fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2759fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2760effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2761fa22f6d0SBarry Smith 
2762fa22f6d0SBarry Smith     /* local sweep */
276341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2764fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2765f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2766ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2767ffe4fb16SHong Zhang }
2768ffe4fb16SHong Zhang 
2769ffe4fb16SHong Zhang #undef __FUNCT__
277041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
277141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2772ffe4fb16SHong Zhang {
2773ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2774dfbe8321SBarry Smith   PetscErrorCode ierr;
27752798e883SHong Zhang   Vec            lvec1,bb1;
27762798e883SHong Zhang 
27772798e883SHong Zhang   PetscFunctionBegin;
2778e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2779e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27802798e883SHong Zhang 
2781c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
27822798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
278341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27842798e883SHong Zhang       its--;
27852798e883SHong Zhang     }
27862798e883SHong Zhang 
27872798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27882798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27892798e883SHong Zhang     while (its--) {
2790ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27912798e883SHong Zhang 
27922798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27932798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2794efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27952798e883SHong Zhang 
2796ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27972798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2798ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27992798e883SHong Zhang 
28002798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2801efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
28022798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
28032798e883SHong Zhang 
2804ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
28052798e883SHong Zhang 
2806c14dc6b6SHong Zhang       /* diagonal sweep */
280741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
28082798e883SHong Zhang     }
28096bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
28106bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
28116bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
28122798e883SHong Zhang   PetscFunctionReturn(0);
28132798e883SHong Zhang }
28142798e883SHong Zhang 
2815dfb205c3SBarry Smith #undef __FUNCT__
2816dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2817dfb205c3SBarry Smith /*@
2818dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2819dfb205c3SBarry Smith          CSR format the local rows.
2820dfb205c3SBarry Smith 
2821dfb205c3SBarry Smith    Collective on MPI_Comm
2822dfb205c3SBarry Smith 
2823dfb205c3SBarry Smith    Input Parameters:
2824dfb205c3SBarry Smith +  comm - MPI communicator
2825dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2826dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2827dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2828dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2829dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2830dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2831dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2832dfb205c3SBarry Smith .   i - row indices
2833dfb205c3SBarry Smith .   j - column indices
2834dfb205c3SBarry Smith -   a - matrix values
2835dfb205c3SBarry Smith 
2836dfb205c3SBarry Smith    Output Parameter:
2837dfb205c3SBarry Smith .   mat - the matrix
2838dfb205c3SBarry Smith 
2839dfb205c3SBarry Smith    Level: intermediate
2840dfb205c3SBarry Smith 
2841dfb205c3SBarry Smith    Notes:
2842dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2843dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2844dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2845dfb205c3SBarry Smith 
2846dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2847dfb205c3SBarry Smith 
2848dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2849dfb205c3SBarry Smith 
2850dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
285169b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2852dfb205c3SBarry Smith @*/
28537087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2854dfb205c3SBarry Smith {
2855dfb205c3SBarry Smith   PetscErrorCode ierr;
2856dfb205c3SBarry Smith 
2857dfb205c3SBarry Smith 
2858dfb205c3SBarry Smith   PetscFunctionBegin;
2859f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2860dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2861dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2862dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2863dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2864dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2865dfb205c3SBarry Smith   PetscFunctionReturn(0);
2866dfb205c3SBarry Smith }
2867dfb205c3SBarry Smith 
2868dfb205c3SBarry Smith 
2869dfb205c3SBarry Smith #undef __FUNCT__
2870dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2871dfb205c3SBarry Smith /*@C
2872dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2873dfb205c3SBarry Smith    (the default parallel PETSc format).
2874dfb205c3SBarry Smith 
2875dfb205c3SBarry Smith    Collective on MPI_Comm
2876dfb205c3SBarry Smith 
2877dfb205c3SBarry Smith    Input Parameters:
28781c4f3114SJed Brown +  B - the matrix
2879dfb205c3SBarry Smith .  bs - the block size
2880dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2881dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2882dfb205c3SBarry Smith -  v - optional values in the matrix
2883dfb205c3SBarry Smith 
2884dfb205c3SBarry Smith    Level: developer
2885dfb205c3SBarry Smith 
2886dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2887dfb205c3SBarry Smith 
288869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2889dfb205c3SBarry Smith @*/
28907087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2891dfb205c3SBarry Smith {
28924ac538c5SBarry Smith   PetscErrorCode ierr;
2893dfb205c3SBarry Smith 
2894dfb205c3SBarry Smith   PetscFunctionBegin;
28954ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2896dfb205c3SBarry Smith   PetscFunctionReturn(0);
2897dfb205c3SBarry Smith }
2898dfb205c3SBarry Smith 
2899de4b53ebSHong Zhang #undef __FUNCT__
290010c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
290110c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
29024dcd73b1SHong Zhang {
29034dcd73b1SHong Zhang   PetscErrorCode ierr;
290410c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
290510c56fdeSHong Zhang   PetscInt       *indx;
290610c56fdeSHong Zhang   PetscScalar    *values;
2907dfb205c3SBarry Smith 
29084dcd73b1SHong Zhang   PetscFunctionBegin;
29094dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
291010c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
291110c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
291210c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
291310c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
29144dcd73b1SHong Zhang 
291510c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
291610c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
291710c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
291810c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
291910c56fdeSHong Zhang     }
292010c56fdeSHong Zhang     /* Check sum(n) = Nbs */
292110c56fdeSHong Zhang     ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
292210c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
292310c56fdeSHong Zhang 
292410c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
292510c56fdeSHong Zhang     rstart -= mbs;
29264dcd73b1SHong Zhang 
29274dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
292810c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
2929e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
293010c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
29314dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
29324dcd73b1SHong Zhang       nnz = nnz/bs;
29334dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
29344dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
29354dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
29364dcd73b1SHong Zhang     }
2937e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
29384dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
29394dcd73b1SHong Zhang 
29404dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
294110c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
29424dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
29434dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
29444dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
29454dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
29464dcd73b1SHong Zhang   }
29474dcd73b1SHong Zhang 
294810c56fdeSHong Zhang   /* numeric phase */
29494dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
295010c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
29514dcd73b1SHong Zhang 
2952e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
29534dcd73b1SHong Zhang   for (i=0; i<m; i++) {
29544dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29554dcd73b1SHong Zhang     Ii   = i + rstart;
295610c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
29574dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29584dcd73b1SHong Zhang   }
2959e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
296010c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
296110c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29624dcd73b1SHong Zhang   PetscFunctionReturn(0);
29634dcd73b1SHong Zhang }
2964