1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 226214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 236214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 246214f412SHong Zhang #endif 25a30f8f8cSSatish Balay 264a2ae208SSatish Balay #undef __FUNCT__ 274a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 287087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 29a30f8f8cSSatish Balay { 30f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 31dfbe8321SBarry Smith PetscErrorCode ierr; 32a30f8f8cSSatish Balay 33a30f8f8cSSatish Balay PetscFunctionBegin; 34a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 35a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 36a30f8f8cSSatish Balay PetscFunctionReturn(0); 37a30f8f8cSSatish Balay } 38a30f8f8cSSatish Balay 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 417087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 53a30f8f8cSSatish Balay { \ 54a30f8f8cSSatish Balay \ 55a30f8f8cSSatish Balay brow = row/bs; \ 56a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 57a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 58a30f8f8cSSatish Balay bcol = col/bs; \ 59a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 60a30f8f8cSSatish Balay low = 0; high = nrow; \ 61a30f8f8cSSatish Balay while (high-low > 3) { \ 62a30f8f8cSSatish Balay t = (low+high)/2; \ 63a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 64a30f8f8cSSatish Balay else low = t; \ 65a30f8f8cSSatish Balay } \ 66a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 67a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 68a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 69a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 70a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 71a30f8f8cSSatish Balay else *bap = value; \ 72a30f8f8cSSatish Balay goto a_noinsert; \ 73a30f8f8cSSatish Balay } \ 74a30f8f8cSSatish Balay } \ 75a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 76e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 77fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 78a30f8f8cSSatish Balay N = nrow++ - 1; \ 79a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 80a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 81a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 82a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 83a30f8f8cSSatish Balay } \ 84a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 85a30f8f8cSSatish Balay rp[_i] = bcol; \ 86a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 87e56f5c9eSBarry Smith A->nonzerostate++;\ 88a30f8f8cSSatish Balay a_noinsert:; \ 89a30f8f8cSSatish Balay ailen[brow] = nrow; \ 90a30f8f8cSSatish Balay } 91e5e170daSBarry Smith 92a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 93a30f8f8cSSatish Balay { \ 94a30f8f8cSSatish Balay brow = row/bs; \ 95a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 96a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 97a30f8f8cSSatish Balay bcol = col/bs; \ 98a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 99a30f8f8cSSatish Balay low = 0; high = nrow; \ 100a30f8f8cSSatish Balay while (high-low > 3) { \ 101a30f8f8cSSatish Balay t = (low+high)/2; \ 102a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 103a30f8f8cSSatish Balay else low = t; \ 104a30f8f8cSSatish Balay } \ 105a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 106a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 107a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 108a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 109a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 110a30f8f8cSSatish Balay else *bap = value; \ 111a30f8f8cSSatish Balay goto b_noinsert; \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 115e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 116fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 117a30f8f8cSSatish Balay N = nrow++ - 1; \ 118a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 119a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 120a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 122a30f8f8cSSatish Balay } \ 123a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 124a30f8f8cSSatish Balay rp[_i] = bcol; \ 125a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 126e56f5c9eSBarry Smith B->nonzerostate++;\ 127a30f8f8cSSatish Balay b_noinsert:; \ 128a30f8f8cSSatish Balay bilen[brow] = nrow; \ 129a30f8f8cSSatish Balay } 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 132a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 133a30f8f8cSSatish Balay */ 1344a2ae208SSatish Balay #undef __FUNCT__ 135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 137a30f8f8cSSatish Balay { 138a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 139a30f8f8cSSatish Balay MatScalar value; 140ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 141dfbe8321SBarry Smith PetscErrorCode ierr; 1421302d50aSBarry Smith PetscInt i,j,row,col; 143d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 144d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 145d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 146a30f8f8cSSatish Balay 147a30f8f8cSSatish Balay /* Some Variables required in the macro */ 148a30f8f8cSSatish Balay Mat A = baij->A; 149a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1501302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 151a30f8f8cSSatish Balay MatScalar *aa =a->a; 152a30f8f8cSSatish Balay 153a30f8f8cSSatish Balay Mat B = baij->B; 154a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1551302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 156a30f8f8cSSatish Balay MatScalar *ba =b->a; 157a30f8f8cSSatish Balay 1581302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1591302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 160a30f8f8cSSatish Balay MatScalar *ap,*bap; 161a30f8f8cSSatish Balay 162a30f8f8cSSatish Balay /* for stash */ 1630298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1640298fd71SBarry Smith MatScalar *v_loc = NULL; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (!baij->donotstash) { 16859ffdab8SBarry Smith if (n > baij->n_loc) { 16959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 171785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 172785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 17326fbe8dcSKarl Rupp 17459ffdab8SBarry Smith baij->n_loc = n; 17559ffdab8SBarry Smith } 17659ffdab8SBarry Smith in_loc = baij->in_loc; 17759ffdab8SBarry Smith v_loc = baij->v_loc; 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 180a30f8f8cSSatish Balay for (i=0; i<m; i++) { 181a30f8f8cSSatish Balay if (im[i] < 0) continue; 1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 183e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 184a30f8f8cSSatish Balay #endif 185a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 186a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 187a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18801b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 18901b2bd88SHong Zhang if (a->ignore_ltriangular) { 19001b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19126fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19201b2bd88SHong Zhang } 193a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 194a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 195a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 196a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 197db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 198db4deed7SKarl Rupp else value = v[i+j*m]; 199a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 200a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 201a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 203cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 204a30f8f8cSSatish Balay #endif 205a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 206a30f8f8cSSatish Balay if (mat->was_assembled) { 207a30f8f8cSSatish Balay if (!baij->colmap) { 208ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 209a30f8f8cSSatish Balay } 210a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 211a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21271730473SSatish Balay col = col - 1; 213a30f8f8cSSatish Balay #else 21471730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 215a30f8f8cSSatish Balay #endif 216a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 217ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 218a30f8f8cSSatish Balay col = in[j]; 219a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 220a30f8f8cSSatish Balay B = baij->B; 221a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 222a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 223a30f8f8cSSatish Balay ba = b->a; 22471730473SSatish Balay } else col += in[j]%bs; 225a30f8f8cSSatish Balay } else col = in[j]; 226db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 227db4deed7SKarl Rupp else value = v[i+j*m]; 228a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 229a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 230a30f8f8cSSatish Balay } 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay } else { /* off processor entry */ 2334cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 234a30f8f8cSSatish Balay if (!baij->donotstash) { 2355080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++) { 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray =baij->barray; 261ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if (!barray) { 269785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 281e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 286f3f98c53SJed Brown if (im[i] > in[j]) { 287f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 288e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 289f3f98c53SJed Brown } 2900880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2910880e062SHong Zhang if ((roworiented) && (n == 1)) { 292f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2930880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 294f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2950880e062SHong Zhang } else { /* Here a copy is required */ 2960880e062SHong Zhang if (roworiented) { 2970880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2980880e062SHong Zhang } else { 2990880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3000880e062SHong Zhang } 3010880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3020880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3030880e062SHong Zhang *barray++ = *value++; 3040880e062SHong Zhang } 3050880e062SHong Zhang } 3060880e062SHong Zhang barray -=bs2; 3070880e062SHong Zhang } 3080880e062SHong Zhang 3090880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 3100880e062SHong Zhang col = in[j] - cstart; 3110880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 31226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 314cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3150880e062SHong Zhang #endif 3160880e062SHong Zhang else { 3170880e062SHong Zhang if (mat->was_assembled) { 3180880e062SHong Zhang if (!baij->colmap) { 319ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3200880e062SHong Zhang } 3210880e062SHong Zhang 3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3230880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3241302d50aSBarry Smith { PetscInt data; 3250880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 326e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang } 3280880e062SHong Zhang #else 329e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3300880e062SHong Zhang #endif 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3330880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3340880e062SHong Zhang col = (col - 1)/bs; 3350880e062SHong Zhang #else 3360880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3370880e062SHong Zhang #endif 3380880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 339ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3400880e062SHong Zhang col = in[j]; 3410880e062SHong Zhang } 34226fbe8dcSKarl Rupp } else col = in[j]; 343e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3440880e062SHong Zhang } 3450880e062SHong Zhang } 3460880e062SHong Zhang } else { 3474cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3480880e062SHong Zhang if (!baij->donotstash) { 3490880e062SHong Zhang if (roworiented) { 3500880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3510880e062SHong Zhang } else { 3520880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } 3540880e062SHong Zhang } 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang PetscFunctionReturn(0); 358a30f8f8cSSatish Balay } 359a30f8f8cSSatish Balay 3604a2ae208SSatish Balay #undef __FUNCT__ 3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 363a30f8f8cSSatish Balay { 364f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3656849ba73SBarry Smith PetscErrorCode ierr; 366d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 367d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 368a30f8f8cSSatish Balay 369a30f8f8cSSatish Balay PetscFunctionBegin; 370a30f8f8cSSatish Balay for (i=0; i<m; i++) { 371e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 372e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 373a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 374a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 375a30f8f8cSSatish Balay for (j=0; j<n; j++) { 376e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 377e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 378a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 379a30f8f8cSSatish Balay col = idxn[j] - bscstart; 380c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } else { 382a30f8f8cSSatish Balay if (!baij->colmap) { 383ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 386a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 387a30f8f8cSSatish Balay data--; 388a30f8f8cSSatish Balay #else 389a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 390a30f8f8cSSatish Balay #endif 391a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 392a30f8f8cSSatish Balay else { 393a30f8f8cSSatish Balay col = data + idxn[j]%bs; 394e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 398f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay PetscFunctionReturn(0); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay 4034a2ae208SSatish Balay #undef __FUNCT__ 4044a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 405dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 406a30f8f8cSSatish Balay { 407a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 408dfbe8321SBarry Smith PetscErrorCode ierr; 409a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 410a30f8f8cSSatish Balay 411a30f8f8cSSatish Balay PetscFunctionBegin; 412a30f8f8cSSatish Balay if (baij->size == 1) { 413a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 414a30f8f8cSSatish Balay } else { 415a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 416785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 418a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 419a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 420a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 421ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4228f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 423a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4240b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4250b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4260b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4270b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 428899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 429d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4300b8dc8d2SHong Zhang MatScalar *v; 4310b8dc8d2SHong Zhang 432dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 433d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4340b8dc8d2SHong Zhang /* Amat */ 4350b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4360b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4370b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4380b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4390b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4400b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4410b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4420b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4430b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4440b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4450b8dc8d2SHong Zhang /* non-diagonal block */ 4460b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang /* Bmat */ 4520b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4530b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4540b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4550b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4560b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4570b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4580b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4590b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4600b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4610b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4620b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4630b8dc8d2SHong Zhang } 4640b8dc8d2SHong Zhang } 4650b8dc8d2SHong Zhang } 4660b8dc8d2SHong Zhang } 467ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4680b8dc8d2SHong Zhang *norm = 0.0; 469d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4700b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4710b8dc8d2SHong Zhang } 47274ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 473f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 474a30f8f8cSSatish Balay } 475a30f8f8cSSatish Balay PetscFunctionReturn(0); 476a30f8f8cSSatish Balay } 477a30f8f8cSSatish Balay 4784a2ae208SSatish Balay #undef __FUNCT__ 4794a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 480dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 481a30f8f8cSSatish Balay { 482a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 483dfbe8321SBarry Smith PetscErrorCode ierr; 4841302d50aSBarry Smith PetscInt nstash,reallocs; 485a30f8f8cSSatish Balay InsertMode addv; 486a30f8f8cSSatish Balay 487a30f8f8cSSatish Balay PetscFunctionBegin; 48826fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 489a30f8f8cSSatish Balay 490a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 491ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 492ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 493a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 494a30f8f8cSSatish Balay 495d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4961e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 497a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4981e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 499a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5001e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 501a30f8f8cSSatish Balay PetscFunctionReturn(0); 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay 5044a2ae208SSatish Balay #undef __FUNCT__ 5054a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 506dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 507a30f8f8cSSatish Balay { 508a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 509a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 5106849ba73SBarry Smith PetscErrorCode ierr; 51113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 512e44c0bd4SBarry Smith PetscInt *row,*col; 513ace3abfcSBarry Smith PetscBool other_disassembled; 51413f74950SBarry Smith PetscMPIInt n; 515ace3abfcSBarry Smith PetscBool r1,r2,r3; 516a30f8f8cSSatish Balay MatScalar *val; 517a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 518a30f8f8cSSatish Balay 51991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 520a30f8f8cSSatish Balay PetscFunctionBegin; 5214cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 522a30f8f8cSSatish Balay while (1) { 523a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 524a30f8f8cSSatish Balay if (!flg) break; 525a30f8f8cSSatish Balay 526a30f8f8cSSatish Balay for (i=0; i<n;) { 527a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 52826fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 52926fbe8dcSKarl Rupp if (row[j] != rstart) break; 53026fbe8dcSKarl Rupp } 531a30f8f8cSSatish Balay if (j < n) ncols = j-i; 532a30f8f8cSSatish Balay else ncols = n-i; 533a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 534dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 535a30f8f8cSSatish Balay i = j; 536a30f8f8cSSatish Balay } 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 539a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 540a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 541a30f8f8cSSatish Balay restore the original flags */ 542a30f8f8cSSatish Balay r1 = baij->roworiented; 543a30f8f8cSSatish Balay r2 = a->roworiented; 54491c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 54526fbe8dcSKarl Rupp 546a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 547a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 54826fbe8dcSKarl Rupp 54991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 550a30f8f8cSSatish Balay while (1) { 551a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 552a30f8f8cSSatish Balay if (!flg) break; 553a30f8f8cSSatish Balay 554a30f8f8cSSatish Balay for (i=0; i<n;) { 555a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 55626fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 55726fbe8dcSKarl Rupp if (row[j] != rstart) break; 55826fbe8dcSKarl Rupp } 559a30f8f8cSSatish Balay if (j < n) ncols = j-i; 560a30f8f8cSSatish Balay else ncols = n-i; 561dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 562a30f8f8cSSatish Balay i = j; 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 56626fbe8dcSKarl Rupp 567a30f8f8cSSatish Balay baij->roworiented = r1; 568a30f8f8cSSatish Balay a->roworiented = r2; 56926fbe8dcSKarl Rupp 57091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay 576a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 577a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 578a30f8f8cSSatish Balay /* 579a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 580a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 581a30f8f8cSSatish Balay */ 582a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 583ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 584a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 585ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 589a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 591a30f8f8cSSatish Balay } 592a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay 59574ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 59626fbe8dcSKarl Rupp 597a30f8f8cSSatish Balay baij->rowvalues = 0; 5984f9cfa9eSBarry Smith 5994f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 6004f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 601e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 60209e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 603e56f5c9eSBarry Smith } 604a30f8f8cSSatish Balay PetscFunctionReturn(0); 605a30f8f8cSSatish Balay } 606a30f8f8cSSatish Balay 6077da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 608dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6099804daf3SBarry Smith #include <petscdraw.h> 6104a2ae208SSatish Balay #undef __FUNCT__ 6114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6126849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 613a30f8f8cSSatish Balay { 614a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 615dfbe8321SBarry Smith PetscErrorCode ierr; 616d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6177da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 618ace3abfcSBarry Smith PetscBool iascii,isdraw; 619b0a32e0cSBarry Smith PetscViewer sviewer; 620f3ef73ceSBarry Smith PetscViewerFormat format; 621a30f8f8cSSatish Balay 622a30f8f8cSSatish Balay PetscFunctionBegin; 623251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 624251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 62532077d6dSBarry Smith if (iascii) { 626b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 627456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 628a30f8f8cSSatish Balay MatInfo info; 629ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6317b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6327b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 633a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 634e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 635a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 636e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 637b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6387b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 63907d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 640a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 641a30f8f8cSSatish Balay PetscFunctionReturn(0); 642fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 64377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 644a30f8f8cSSatish Balay PetscFunctionReturn(0); 645c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 646c1490034SHong Zhang PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 650a30f8f8cSSatish Balay if (isdraw) { 651b0a32e0cSBarry Smith PetscDraw draw; 652ace3abfcSBarry Smith PetscBool isnull; 653b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 654b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay 6577da1fb6eSBarry Smith { 658a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 659a30f8f8cSSatish Balay Mat A; 66065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 66165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 662d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 663a30f8f8cSSatish Balay MatScalar *a; 6643e219373SBarry Smith const char *matname; 665a30f8f8cSSatish Balay 666f204ca49SKris Buschelman /* Should this be the same type as mat? */ 667ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 668a30f8f8cSSatish Balay if (!rank) { 669f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 670a30f8f8cSSatish Balay } else { 671f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 672a30f8f8cSSatish Balay } 673f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6740298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6752b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6763bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay /* copy over the A part */ 67965d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 680a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 681785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 682a30f8f8cSSatish Balay 683a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 684e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 68526fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 686a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 687e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 688a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 689dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 69026fbe8dcSKarl Rupp col++; 69126fbe8dcSKarl Rupp a += bs; 692a30f8f8cSSatish Balay } 693a30f8f8cSSatish Balay } 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay /* copy over the B part */ 69665d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69765d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 698a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 699e9f7bc9eSHong Zhang 700e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 70126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 702a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 703a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 704a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 705799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 70626fbe8dcSKarl Rupp col++; 70726fbe8dcSKarl Rupp a += bs; 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 713a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 714a30f8f8cSSatish Balay /* 715a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 716b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 717a30f8f8cSSatish Balay */ 718b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 719ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 7203e219373SBarry Smith if (!rank) { 721ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 7227da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 723a30f8f8cSSatish Balay } 724b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7256bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 726a30f8f8cSSatish Balay } 727a30f8f8cSSatish Balay PetscFunctionReturn(0); 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 7304a2ae208SSatish Balay #undef __FUNCT__ 7314a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 732dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 733a30f8f8cSSatish Balay { 734dfbe8321SBarry Smith PetscErrorCode ierr; 735ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay PetscFunctionBegin; 738251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 739251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 740251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 741251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 74232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 743a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay PetscFunctionReturn(0); 746a30f8f8cSSatish Balay } 747a30f8f8cSSatish Balay 7484a2ae208SSatish Balay #undef __FUNCT__ 7494a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 750dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 751a30f8f8cSSatish Balay { 752a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 753dfbe8321SBarry Smith PetscErrorCode ierr; 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay PetscFunctionBegin; 756a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 757d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 758a30f8f8cSSatish Balay #endif 759a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 760a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7616bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7626bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 763a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7646bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 765a30f8f8cSSatish Balay #else 76605b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 767a30f8f8cSSatish Balay #endif 76805b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7706bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7716bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7726bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7736bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7746bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7756bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7766bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7775755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77805b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77905b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7806bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7816bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7826bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 783ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 78405b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 785a30f8f8cSSatish Balay #endif 78659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 788899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 789bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 790901853e0SKris Buschelman 791dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 792bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 793bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 794bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 795bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 796bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 7976214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 7986214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 7996214f412SHong Zhang #endif 800a30f8f8cSSatish Balay PetscFunctionReturn(0); 801a30f8f8cSSatish Balay } 802a30f8f8cSSatish Balay 8034a2ae208SSatish Balay #undef __FUNCT__ 804547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 805547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 806547795f9SHong Zhang { 807547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 808547795f9SHong Zhang PetscErrorCode ierr; 809547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 810547795f9SHong Zhang PetscScalar *x,*from; 811547795f9SHong Zhang 812547795f9SHong Zhang PetscFunctionBegin; 813547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 814e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 815547795f9SHong Zhang 816547795f9SHong Zhang /* diagonal part */ 817547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 818547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 819547795f9SHong Zhang 820547795f9SHong Zhang /* subdiagonal part */ 821547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 822547795f9SHong Zhang 823547795f9SHong Zhang /* copy x into the vec slvec0 */ 824547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 825547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 826547795f9SHong Zhang 827547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 828547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 829547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 830547795f9SHong Zhang 831547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 832547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 833547795f9SHong Zhang /* supperdiagonal part */ 834547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 835547795f9SHong Zhang PetscFunctionReturn(0); 836547795f9SHong Zhang } 837547795f9SHong Zhang 838547795f9SHong Zhang #undef __FUNCT__ 839a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 840dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 841a9d4b620SHong Zhang { 842a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 843dfbe8321SBarry Smith PetscErrorCode ierr; 844d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 845d9ca1df4SBarry Smith PetscScalar *from; 846d9ca1df4SBarry Smith const PetscScalar *x; 847a9d4b620SHong Zhang 848a9d4b620SHong Zhang PetscFunctionBegin; 849a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 850e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 851a9d4b620SHong Zhang 852a9d4b620SHong Zhang /* diagonal part */ 853a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 854fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 855a9d4b620SHong Zhang 856a9d4b620SHong Zhang /* subdiagonal part */ 857a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 858fc165ae2SBarry Smith 859a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8601ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 861d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 862a9d4b620SHong Zhang 863fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 864fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 865d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 866fc165ae2SBarry Smith 867fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 868ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 869a9d4b620SHong Zhang /* supperdiagonal part */ 870a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 871a9d4b620SHong Zhang PetscFunctionReturn(0); 872a9d4b620SHong Zhang } 873a9d4b620SHong Zhang 874a9d4b620SHong Zhang #undef __FUNCT__ 87540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 876dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 877a30f8f8cSSatish Balay { 878a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 879dfbe8321SBarry Smith PetscErrorCode ierr; 8801302d50aSBarry Smith PetscInt nt; 881a30f8f8cSSatish Balay 882a30f8f8cSSatish Balay PetscFunctionBegin; 883a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 884e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 885e7e72b3dSBarry Smith 886a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 887e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88865d70643SHong Zhang 889ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 890b941877fSHong Zhang /* do diagonal part */ 891b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 892b941877fSHong Zhang /* do supperdiagonal part */ 893ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 894b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 895b941877fSHong Zhang /* do subdiagonal part */ 896b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 897ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 898ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 899a30f8f8cSSatish Balay PetscFunctionReturn(0); 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 9024a2ae208SSatish Balay #undef __FUNCT__ 9034a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 904dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 905a30f8f8cSSatish Balay { 906de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 907dfbe8321SBarry Smith PetscErrorCode ierr; 908d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 909d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 910d9ca1df4SBarry Smith const PetscScalar *x; 911a9d4b620SHong Zhang 912a9d4b620SHong Zhang PetscFunctionBegin; 913a9d4b620SHong Zhang /* 914ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 9150ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 916a9d4b620SHong Zhang */ 917a9d4b620SHong Zhang /* diagonal part */ 918a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9192dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 920a9d4b620SHong Zhang 921a9d4b620SHong Zhang /* subdiagonal part */ 922a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 923a9d4b620SHong Zhang 924a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9251ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 926d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 927a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9281ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 929a9d4b620SHong Zhang 930ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 931d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 932ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 933a9d4b620SHong Zhang 934a9d4b620SHong Zhang /* supperdiagonal part */ 935a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 936a9d4b620SHong Zhang PetscFunctionReturn(0); 937a9d4b620SHong Zhang } 938a9d4b620SHong Zhang 939a9d4b620SHong Zhang #undef __FUNCT__ 940a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 941dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 942a9d4b620SHong Zhang { 943a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 944dfbe8321SBarry Smith PetscErrorCode ierr; 945a30f8f8cSSatish Balay 946a30f8f8cSSatish Balay PetscFunctionBegin; 947ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 948b941877fSHong Zhang /* do diagonal part */ 949b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 950b941877fSHong Zhang /* do supperdiagonal part */ 951ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 952de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 953de8b6608SHong Zhang 954b941877fSHong Zhang /* do subdiagonal part */ 955a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 956ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 957ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 958a30f8f8cSSatish Balay PetscFunctionReturn(0); 959a30f8f8cSSatish Balay } 960a30f8f8cSSatish Balay 961a30f8f8cSSatish Balay /* 962a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 963a30f8f8cSSatish Balay diagonal block 964a30f8f8cSSatish Balay */ 9654a2ae208SSatish Balay #undef __FUNCT__ 9664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 967dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 968a30f8f8cSSatish Balay { 969a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 970dfbe8321SBarry Smith PetscErrorCode ierr; 971a30f8f8cSSatish Balay 972a30f8f8cSSatish Balay PetscFunctionBegin; 973e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 974a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 975a30f8f8cSSatish Balay PetscFunctionReturn(0); 976a30f8f8cSSatish Balay } 977a30f8f8cSSatish Balay 9784a2ae208SSatish Balay #undef __FUNCT__ 9794a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 980f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 981a30f8f8cSSatish Balay { 982a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 983dfbe8321SBarry Smith PetscErrorCode ierr; 984a30f8f8cSSatish Balay 985a30f8f8cSSatish Balay PetscFunctionBegin; 986f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 987f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 988a30f8f8cSSatish Balay PetscFunctionReturn(0); 989a30f8f8cSSatish Balay } 990a30f8f8cSSatish Balay 9914a2ae208SSatish Balay #undef __FUNCT__ 9924a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9931302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 994a30f8f8cSSatish Balay { 995d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 996d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 997d0d4cfc2SHong Zhang PetscErrorCode ierr; 998d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 999d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1000899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1001d0d4cfc2SHong Zhang 1002a30f8f8cSSatish Balay PetscFunctionBegin; 1003e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1004d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1005d0d4cfc2SHong Zhang 1006d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1007d0d4cfc2SHong Zhang /* 1008d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1009d0d4cfc2SHong Zhang */ 1010d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1011d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1012d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1013d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1014d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 101526fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1016d0d4cfc2SHong Zhang } 1017dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1018d0d4cfc2SHong Zhang } 1019d0d4cfc2SHong Zhang 1020e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1021d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1022d0d4cfc2SHong Zhang 1023d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1024d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1025d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1026d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1027d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1028d0d4cfc2SHong Zhang nztot = nzA + nzB; 1029d0d4cfc2SHong Zhang 1030d0d4cfc2SHong Zhang cmap = mat->garray; 1031d0d4cfc2SHong Zhang if (v || idx) { 1032d0d4cfc2SHong Zhang if (nztot) { 1033d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1034d0d4cfc2SHong Zhang PetscInt imark = -1; 1035d0d4cfc2SHong Zhang if (v) { 1036d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1037d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1038d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1039d0d4cfc2SHong Zhang else break; 1040d0d4cfc2SHong Zhang } 1041d0d4cfc2SHong Zhang imark = i; 1042d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1043d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1044d0d4cfc2SHong Zhang } 1045d0d4cfc2SHong Zhang if (idx) { 1046d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1047d0d4cfc2SHong Zhang if (imark > -1) { 1048d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1049d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1050d0d4cfc2SHong Zhang } 1051d0d4cfc2SHong Zhang } else { 1052d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 105326fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1054d0d4cfc2SHong Zhang else break; 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang imark = i; 1057d0d4cfc2SHong Zhang } 1058d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1059d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang } else { 1062d0d4cfc2SHong Zhang if (idx) *idx = 0; 1063d0d4cfc2SHong Zhang if (v) *v = 0; 1064d0d4cfc2SHong Zhang } 1065d0d4cfc2SHong Zhang } 1066d0d4cfc2SHong Zhang *nz = nztot; 1067d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1068d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1069a30f8f8cSSatish Balay PetscFunctionReturn(0); 1070a30f8f8cSSatish Balay } 1071a30f8f8cSSatish Balay 10724a2ae208SSatish Balay #undef __FUNCT__ 10734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10741302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1075a30f8f8cSSatish Balay { 1076a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1077a30f8f8cSSatish Balay 1078a30f8f8cSSatish Balay PetscFunctionBegin; 1079e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1080a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1081a30f8f8cSSatish Balay PetscFunctionReturn(0); 1082a30f8f8cSSatish Balay } 1083a30f8f8cSSatish Balay 10844a2ae208SSatish Balay #undef __FUNCT__ 1085d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1086d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1087d0d4cfc2SHong Zhang { 1088d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1089d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1090d0d4cfc2SHong Zhang 1091d0d4cfc2SHong Zhang PetscFunctionBegin; 1092d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1093d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1094d0d4cfc2SHong Zhang } 1095d0d4cfc2SHong Zhang #undef __FUNCT__ 1096d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1097d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1098d0d4cfc2SHong Zhang { 1099d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1100d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1101d0d4cfc2SHong Zhang 1102d0d4cfc2SHong Zhang PetscFunctionBegin; 1103d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1104d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1105d0d4cfc2SHong Zhang } 1106d0d4cfc2SHong Zhang 1107d0d4cfc2SHong Zhang #undef __FUNCT__ 110899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 111099cafbc1SBarry Smith { 111199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111299cafbc1SBarry Smith PetscErrorCode ierr; 111399cafbc1SBarry Smith 111499cafbc1SBarry Smith PetscFunctionBegin; 111599cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111699cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111799cafbc1SBarry Smith PetscFunctionReturn(0); 111899cafbc1SBarry Smith } 111999cafbc1SBarry Smith 112099cafbc1SBarry Smith #undef __FUNCT__ 112199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 112299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 112399cafbc1SBarry Smith { 112499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112599cafbc1SBarry Smith PetscErrorCode ierr; 112699cafbc1SBarry Smith 112799cafbc1SBarry Smith PetscFunctionBegin; 112899cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112999cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 113099cafbc1SBarry Smith PetscFunctionReturn(0); 113199cafbc1SBarry Smith } 113299cafbc1SBarry Smith 1133*36032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 1134*36032a97SHong Zhang Input: isrow - distributed(parallel), 1135*36032a97SHong Zhang iscol_local - locally owned (seq) 1136*36032a97SHong Zhang */ 113799cafbc1SBarry Smith #undef __FUNCT__ 1138*36032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 1139*36032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 11408f46ffcaSHong Zhang { 11418f46ffcaSHong Zhang PetscErrorCode ierr; 11428f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 11438f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 1144*36032a97SHong Zhang 1145*36032a97SHong Zhang PetscFunctionBegin; 11468f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 11478f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 1148*36032a97SHong Zhang if (sz1 > sz2) *flg = PETSC_FALSE; 11498f46ffcaSHong Zhang 11508f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 11518f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 11528f46ffcaSHong Zhang 11538f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 11548f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 11558f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 11568f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 11578f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 11588f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 11598f46ffcaSHong Zhang 11608f46ffcaSHong Zhang nmatch=0; 11618f46ffcaSHong Zhang k = 0; 11628f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 11638f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 11648f46ffcaSHong Zhang if (a1[i] == a2[j]) { 11658f46ffcaSHong Zhang k = j; nmatch++; 11668f46ffcaSHong Zhang break; 11678f46ffcaSHong Zhang } 11688f46ffcaSHong Zhang } 11698f46ffcaSHong Zhang } 11708f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 11718f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 11728f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 11738f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 1174*36032a97SHong Zhang if (nmatch < sz1) *flg = PETSC_FALSE; 1175*36032a97SHong Zhang PetscFunctionReturn(0); 11768f46ffcaSHong Zhang } 1177*36032a97SHong Zhang 1178*36032a97SHong Zhang #undef __FUNCT__ 1179*36032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 1180*36032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 1181*36032a97SHong Zhang { 1182*36032a97SHong Zhang PetscErrorCode ierr; 1183*36032a97SHong Zhang IS iscol_local; 1184*36032a97SHong Zhang PetscInt csize; 1185*36032a97SHong Zhang PetscBool isequal; 1186*36032a97SHong Zhang 1187*36032a97SHong Zhang PetscFunctionBegin; 1188*36032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1189*36032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 1190*36032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1191*36032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1192*36032a97SHong Zhang } else { 1193*36032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1194*36032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 1195*36032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 11968f46ffcaSHong Zhang } 11978f46ffcaSHong Zhang 11988f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 1199*36032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 12008f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 12018f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 12028f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 12038f46ffcaSHong Zhang } 12048f46ffcaSHong Zhang PetscFunctionReturn(0); 12058f46ffcaSHong Zhang } 12068f46ffcaSHong Zhang 12078f46ffcaSHong Zhang #undef __FUNCT__ 12084a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1209dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1210a30f8f8cSSatish Balay { 1211a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1212dfbe8321SBarry Smith PetscErrorCode ierr; 1213a30f8f8cSSatish Balay 1214a30f8f8cSSatish Balay PetscFunctionBegin; 1215a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1216a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1217a30f8f8cSSatish Balay PetscFunctionReturn(0); 1218a30f8f8cSSatish Balay } 1219a30f8f8cSSatish Balay 12204a2ae208SSatish Balay #undef __FUNCT__ 12214a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1222dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1223a30f8f8cSSatish Balay { 1224a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1225a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1226dfbe8321SBarry Smith PetscErrorCode ierr; 1227a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1228a30f8f8cSSatish Balay 1229a30f8f8cSSatish Balay PetscFunctionBegin; 1230d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 123126fbe8dcSKarl Rupp 1232a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 123326fbe8dcSKarl Rupp 1234a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1235a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 123626fbe8dcSKarl Rupp 1237a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 123826fbe8dcSKarl Rupp 1239a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1240a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1241a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1242a30f8f8cSSatish Balay info->nz_used = isend[0]; 1243a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1244a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1245a30f8f8cSSatish Balay info->memory = isend[3]; 1246a30f8f8cSSatish Balay info->mallocs = isend[4]; 1247a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1248ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 124926fbe8dcSKarl Rupp 1250a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1251a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1252a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1253a30f8f8cSSatish Balay info->memory = irecv[3]; 1254a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1255a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1256ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 125726fbe8dcSKarl Rupp 1258a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1259a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1260a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1261a30f8f8cSSatish Balay info->memory = irecv[3]; 1262a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1263f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1264a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1265a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1266a30f8f8cSSatish Balay info->factor_mallocs = 0; 1267a30f8f8cSSatish Balay PetscFunctionReturn(0); 1268a30f8f8cSSatish Balay } 1269a30f8f8cSSatish Balay 12704a2ae208SSatish Balay #undef __FUNCT__ 12714a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1272ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1273a30f8f8cSSatish Balay { 1274a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1275d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1276dfbe8321SBarry Smith PetscErrorCode ierr; 1277a30f8f8cSSatish Balay 1278a30f8f8cSSatish Balay PetscFunctionBegin; 1279e98b92d7SKris Buschelman switch (op) { 1280512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1281e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 128228b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1283a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1284e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12854e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12864e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1287e98b92d7SKris Buschelman break; 1288e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12894e0d8c25SBarry Smith a->roworiented = flg; 129026fbe8dcSKarl Rupp 12914e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12924e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1293e98b92d7SKris Buschelman break; 12944e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1295290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1296e98b92d7SKris Buschelman break; 1297e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12984e0d8c25SBarry Smith a->donotstash = flg; 1299e98b92d7SKris Buschelman break; 1300e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 13014e0d8c25SBarry Smith a->ht_flag = flg; 1302e98b92d7SKris Buschelman break; 13039a4540c5SBarry Smith case MAT_HERMITIAN: 1304e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1305eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 130626fbe8dcSKarl Rupp 1307547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1308eeffb40dSHong Zhang break; 1309ffa07934SHong Zhang case MAT_SPD: 1310ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1311ffa07934SHong Zhang A->spd = flg; 1312ffa07934SHong Zhang if (flg) { 1313ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1314ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1315ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1316ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1317ffa07934SHong Zhang } 1318ffa07934SHong Zhang break; 131977e54ba9SKris Buschelman case MAT_SYMMETRIC: 1320eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1321eeffb40dSHong Zhang break; 132277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1323eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1324eeffb40dSHong Zhang break; 13259a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1326e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1327290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 132877e54ba9SKris Buschelman break; 1329d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 13304e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1331d0d4cfc2SHong Zhang break; 1332d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 13334e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1334d0d4cfc2SHong Zhang break; 1335d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 13364e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1337d0d4cfc2SHong Zhang break; 1338e98b92d7SKris Buschelman default: 1339e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1340a30f8f8cSSatish Balay } 1341a30f8f8cSSatish Balay PetscFunctionReturn(0); 1342a30f8f8cSSatish Balay } 1343a30f8f8cSSatish Balay 13444a2ae208SSatish Balay #undef __FUNCT__ 13458115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1346fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1347a30f8f8cSSatish Balay { 1348dfbe8321SBarry Smith PetscErrorCode ierr; 13496e111a19SKarl Rupp 1350a30f8f8cSSatish Balay PetscFunctionBegin; 1351815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1352999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1353fc4dec0aSBarry Smith } 13548115998fSBarry Smith PetscFunctionReturn(0); 1355a30f8f8cSSatish Balay } 1356a30f8f8cSSatish Balay 13574a2ae208SSatish Balay #undef __FUNCT__ 13584a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1359dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1360a30f8f8cSSatish Balay { 1361a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1362a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1363dfbe8321SBarry Smith PetscErrorCode ierr; 13645e90f9d9SHong Zhang PetscInt nv,m,n; 1365ace3abfcSBarry Smith PetscBool flg; 1366a30f8f8cSSatish Balay 1367a30f8f8cSSatish Balay PetscFunctionBegin; 1368a30f8f8cSSatish Balay if (ll != rr) { 1369b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1370e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1371a30f8f8cSSatish Balay } 1372b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1373b3bf805bSHong Zhang 13745e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1375e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1376b3bf805bSHong Zhang 13775e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1378e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13795e90f9d9SHong Zhang 1380ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13815e90f9d9SHong Zhang 13825e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 13830298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 13845e90f9d9SHong Zhang 13855e90f9d9SHong Zhang /* scale the diagonal part */ 1386a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1387a30f8f8cSSatish Balay 13885e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1389ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13900298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1391a30f8f8cSSatish Balay PetscFunctionReturn(0); 1392a30f8f8cSSatish Balay } 1393a30f8f8cSSatish Balay 13944a2ae208SSatish Balay #undef __FUNCT__ 13954a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1396dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1397a30f8f8cSSatish Balay { 1398f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1399dfbe8321SBarry Smith PetscErrorCode ierr; 1400a30f8f8cSSatish Balay 1401a30f8f8cSSatish Balay PetscFunctionBegin; 1402a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1403a30f8f8cSSatish Balay PetscFunctionReturn(0); 1404a30f8f8cSSatish Balay } 1405a30f8f8cSSatish Balay 14066849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1407a30f8f8cSSatish Balay 14084a2ae208SSatish Balay #undef __FUNCT__ 14094a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1410ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1411a30f8f8cSSatish Balay { 1412a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1413a30f8f8cSSatish Balay Mat a,b,c,d; 1414ace3abfcSBarry Smith PetscBool flg; 1415dfbe8321SBarry Smith PetscErrorCode ierr; 1416a30f8f8cSSatish Balay 1417a30f8f8cSSatish Balay PetscFunctionBegin; 1418a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1419a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1420a30f8f8cSSatish Balay 1421a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1422abc0a331SBarry Smith if (flg) { 1423a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1424a30f8f8cSSatish Balay } 1425ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1426a30f8f8cSSatish Balay PetscFunctionReturn(0); 1427a30f8f8cSSatish Balay } 1428a30f8f8cSSatish Balay 14294a2ae208SSatish Balay #undef __FUNCT__ 14303c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 14313c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 14323c896bc6SHong Zhang { 14333c896bc6SHong Zhang PetscErrorCode ierr; 14343c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14353c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 14363c896bc6SHong Zhang 14373c896bc6SHong Zhang PetscFunctionBegin; 14383c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 14393c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1440d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 14413c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1442d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14433c896bc6SHong Zhang } else { 14443c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14453c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14463c896bc6SHong Zhang } 14473c896bc6SHong Zhang PetscFunctionReturn(0); 14483c896bc6SHong Zhang } 14493c896bc6SHong Zhang 14503c896bc6SHong Zhang #undef __FUNCT__ 14514994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 14524994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1453273d9f13SBarry Smith { 1454dfbe8321SBarry Smith PetscErrorCode ierr; 1455273d9f13SBarry Smith 1456273d9f13SBarry Smith PetscFunctionBegin; 1457535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1458273d9f13SBarry Smith PetscFunctionReturn(0); 1459273d9f13SBarry Smith } 1460a5e6ed63SBarry Smith 14614fe895cdSHong Zhang #undef __FUNCT__ 14624fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14634fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14644fe895cdSHong Zhang { 14654fe895cdSHong Zhang PetscErrorCode ierr; 14664fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 14674fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14684fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14694fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14704fe895cdSHong Zhang 14714fe895cdSHong Zhang PetscFunctionBegin; 14724fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14734fe895cdSHong Zhang PetscScalar alpha = a; 14744fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 14754fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1476c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 14778b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 14784fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 14794fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1480c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 14818b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1482a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1483ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1484ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1485ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1486ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 14874fe895cdSHong Zhang } else { 14884de5dceeSHong Zhang Mat B; 14894de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 14904de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1491d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14924de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 14934de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 14944de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 14954de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 14964de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 14974de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 14984de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 14994de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 15004de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 15014de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 15024de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 15034de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 15044de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 15054de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 15064de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1507d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 15084de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 15094fe895cdSHong Zhang } 15104fe895cdSHong Zhang PetscFunctionReturn(0); 15114fe895cdSHong Zhang } 15124fe895cdSHong Zhang 1513a5e6ed63SBarry Smith #undef __FUNCT__ 1514a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 15151302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1516a5e6ed63SBarry Smith { 15176849ba73SBarry Smith PetscErrorCode ierr; 15181302d50aSBarry Smith PetscInt i; 1519ace3abfcSBarry Smith PetscBool flg; 1520a5e6ed63SBarry Smith 15216849ba73SBarry Smith PetscFunctionBegin; 15224dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1523a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1524a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 15254dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 15264dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1527a5e6ed63SBarry Smith } 15284dcd73b1SHong Zhang } 1529a5e6ed63SBarry Smith PetscFunctionReturn(0); 1530a5e6ed63SBarry Smith } 1531a5e6ed63SBarry Smith 1532a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 15333964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1534a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1535a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1536a9d4b620SHong Zhang MatMult_MPISBAIJ, 153797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1538431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1539431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1540a30f8f8cSSatish Balay 0, 1541a30f8f8cSSatish Balay 0, 1542a30f8f8cSSatish Balay 0, 154397304618SKris Buschelman /* 10*/ 0, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 154641f059aeSBarry Smith MatSOR_MPISBAIJ, 1547a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 154897304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1549a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1550a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1551a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1552a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 155397304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1554a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1555a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1556a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1557d519adbfSMatthew Knepley /* 24*/ 0, 1558a30f8f8cSSatish Balay 0, 1559a30f8f8cSSatish Balay 0, 1560a30f8f8cSSatish Balay 0, 1561a30f8f8cSSatish Balay 0, 15624994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1563b5df2d14SHong Zhang 0, 1564a30f8f8cSSatish Balay 0, 1565a30f8f8cSSatish Balay 0, 1566a30f8f8cSSatish Balay 0, 1567d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1568a30f8f8cSSatish Balay 0, 1569a30f8f8cSSatish Balay 0, 1570a30f8f8cSSatish Balay 0, 1571a30f8f8cSSatish Balay 0, 1572d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1573a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1574d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1575a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15763c896bc6SHong Zhang MatCopy_MPISBAIJ, 1577d519adbfSMatthew Knepley /* 44*/ 0, 1578a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1579a30f8f8cSSatish Balay 0, 1580a30f8f8cSSatish Balay 0, 1581a30f8f8cSSatish Balay 0, 1582f73d5cc4SBarry Smith /* 49*/ 0, 1583a30f8f8cSSatish Balay 0, 1584a30f8f8cSSatish Balay 0, 1585a30f8f8cSSatish Balay 0, 1586a30f8f8cSSatish Balay 0, 1587d519adbfSMatthew Knepley /* 54*/ 0, 1588a30f8f8cSSatish Balay 0, 1589a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1590a30f8f8cSSatish Balay 0, 1591a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 15928f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 1593a30f8f8cSSatish Balay 0, 1594a30f8f8cSSatish Balay 0, 1595357abbc8SBarry Smith 0, 159624d5174aSHong Zhang 0, 1597d519adbfSMatthew Knepley /* 64*/ 0, 159824d5174aSHong Zhang 0, 159924d5174aSHong Zhang 0, 160024d5174aSHong Zhang 0, 160124d5174aSHong Zhang 0, 1602d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 160324d5174aSHong Zhang 0, 160497304618SKris Buschelman 0, 160597304618SKris Buschelman 0, 160697304618SKris Buschelman 0, 1607d519adbfSMatthew Knepley /* 74*/ 0, 160897304618SKris Buschelman 0, 160997304618SKris Buschelman 0, 161097304618SKris Buschelman 0, 161197304618SKris Buschelman 0, 1612d519adbfSMatthew Knepley /* 79*/ 0, 161397304618SKris Buschelman 0, 161497304618SKris Buschelman 0, 161597304618SKris Buschelman 0, 16165bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1617d519adbfSMatthew Knepley /* 84*/ 0, 1618865e5f61SKris Buschelman 0, 1619865e5f61SKris Buschelman 0, 1620865e5f61SKris Buschelman 0, 1621865e5f61SKris Buschelman 0, 1622d519adbfSMatthew Knepley /* 89*/ 0, 1623865e5f61SKris Buschelman 0, 1624865e5f61SKris Buschelman 0, 1625865e5f61SKris Buschelman 0, 1626865e5f61SKris Buschelman 0, 1627d519adbfSMatthew Knepley /* 94*/ 0, 1628865e5f61SKris Buschelman 0, 1629865e5f61SKris Buschelman 0, 163099cafbc1SBarry Smith 0, 163199cafbc1SBarry Smith 0, 1632d519adbfSMatthew Knepley /* 99*/ 0, 163399cafbc1SBarry Smith 0, 163499cafbc1SBarry Smith 0, 163599cafbc1SBarry Smith 0, 163699cafbc1SBarry Smith 0, 1637d519adbfSMatthew Knepley /*104*/ 0, 163899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1639d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1640d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 164195936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 164295936485SShri Abhyankar /*109*/ 0, 164395936485SShri Abhyankar 0, 164495936485SShri Abhyankar 0, 164595936485SShri Abhyankar 0, 164695936485SShri Abhyankar 0, 164795936485SShri Abhyankar /*114*/ 0, 164895936485SShri Abhyankar 0, 164995936485SShri Abhyankar 0, 165095936485SShri Abhyankar 0, 165195936485SShri Abhyankar 0, 165295936485SShri Abhyankar /*119*/ 0, 165395936485SShri Abhyankar 0, 165495936485SShri Abhyankar 0, 16553964eb88SJed Brown 0, 16563964eb88SJed Brown 0, 16573964eb88SJed Brown /*124*/ 0, 16583964eb88SJed Brown 0, 16593964eb88SJed Brown 0, 16603964eb88SJed Brown 0, 16613964eb88SJed Brown 0, 16623964eb88SJed Brown /*129*/ 0, 16633964eb88SJed Brown 0, 16643964eb88SJed Brown 0, 16653964eb88SJed Brown 0, 16663964eb88SJed Brown 0, 16673964eb88SJed Brown /*134*/ 0, 16683964eb88SJed Brown 0, 16693964eb88SJed Brown 0, 16703964eb88SJed Brown 0, 16713964eb88SJed Brown 0, 16723964eb88SJed Brown /*139*/ 0, 1673f9426fe0SMark Adams 0, 167459f5e6ceSHong Zhang 0, 167559f5e6ceSHong Zhang 0, 167659f5e6ceSHong Zhang 0, 167759f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 167899cafbc1SBarry Smith }; 1679a30f8f8cSSatish Balay 16804a2ae208SSatish Balay #undef __FUNCT__ 16814a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 168211bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1683a30f8f8cSSatish Balay { 1684a30f8f8cSSatish Balay PetscFunctionBegin; 1685a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1686a30f8f8cSSatish Balay PetscFunctionReturn(0); 1687a30f8f8cSSatish Balay } 1688a30f8f8cSSatish Balay 16894a2ae208SSatish Balay #undef __FUNCT__ 1690a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1691b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1692a23d5eceSKris Buschelman { 1693a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1694dfbe8321SBarry Smith PetscErrorCode ierr; 1695535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1696a23d5eceSKris Buschelman 1697a23d5eceSKris Buschelman PetscFunctionBegin; 169833d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 169926283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 170026283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1701e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1702899cda47SBarry Smith 1703a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1704d0f46423SBarry Smith mbs = B->rmap->n/bs; 1705d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1706c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1707a23d5eceSKris Buschelman 1708d0f46423SBarry Smith B->rmap->bs = bs; 1709a23d5eceSKris Buschelman b->bs2 = bs*bs; 1710a23d5eceSKris Buschelman b->mbs = mbs; 1711a23d5eceSKris Buschelman b->Mbs = Mbs; 1712de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1713de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1714a23d5eceSKris Buschelman 1715a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1716d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1717a23d5eceSKris Buschelman } 1718d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1719d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1720a23d5eceSKris Buschelman 1721d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1722d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1723a23d5eceSKris Buschelman 1724526dfc15SBarry Smith if (!B->preallocated) { 1725f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1726d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 17279c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 17283bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1729f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1730d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 17314aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 17323bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1733ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1734526dfc15SBarry Smith } 1735a23d5eceSKris Buschelman 1736526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1737526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 173826fbe8dcSKarl Rupp 1739526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1740a23d5eceSKris Buschelman PetscFunctionReturn(0); 1741a23d5eceSKris Buschelman } 1742a23d5eceSKris Buschelman 1743dfb205c3SBarry Smith #undef __FUNCT__ 1744dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1745dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1746dfb205c3SBarry Smith { 1747dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1748dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1749dfb205c3SBarry Smith const PetscInt *JJ =0; 1750dfb205c3SBarry Smith PetscScalar *values=0; 1751dfb205c3SBarry Smith PetscErrorCode ierr; 1752dfb205c3SBarry Smith 1753dfb205c3SBarry Smith PetscFunctionBegin; 1754ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1755dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1756dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1757dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1758dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1759e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1760dfb205c3SBarry Smith m = B->rmap->n/bs; 1761dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1762dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1763dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1764dfb205c3SBarry Smith 1765dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1766dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1767dfb205c3SBarry Smith for (i=0; i<m; i++) { 1768dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1769dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1770dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1771dfb205c3SBarry Smith JJ = jj + ii[i]; 1772dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1773dfb205c3SBarry Smith if (*JJ >= cstart) break; 1774dfb205c3SBarry Smith JJ++; 1775dfb205c3SBarry Smith } 1776dfb205c3SBarry Smith d = 0; 1777dfb205c3SBarry Smith for (; j<nz; j++) { 1778dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1779dfb205c3SBarry Smith d++; 1780dfb205c3SBarry Smith } 1781dfb205c3SBarry Smith d_nnz[i] = d; 1782dfb205c3SBarry Smith o_nnz[i] = nz - d; 1783dfb205c3SBarry Smith } 1784dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1785dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1786dfb205c3SBarry Smith 1787dfb205c3SBarry Smith values = (PetscScalar*)V; 1788dfb205c3SBarry Smith if (!values) { 1789785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1790dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1791dfb205c3SBarry Smith } 1792dfb205c3SBarry Smith for (i=0; i<m; i++) { 1793dfb205c3SBarry Smith PetscInt row = i + rstart; 1794dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1795dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1796dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1797dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1798dfb205c3SBarry Smith } 1799dfb205c3SBarry Smith 1800dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1801dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1802dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18037827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1804dfb205c3SBarry Smith PetscFunctionReturn(0); 1805dfb205c3SBarry Smith } 1806dfb205c3SBarry Smith 18070bad9183SKris Buschelman /*MC 1808fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1809828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1810828413b8SBarry Smith the matrix is stored. 1811828413b8SBarry Smith 1812828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1813828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 18140bad9183SKris Buschelman 18150bad9183SKris Buschelman Options Database Keys: 18160bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 18170bad9183SKris Buschelman 18180bad9183SKris Buschelman Level: beginner 18190bad9183SKris Buschelman 18200bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 18210bad9183SKris Buschelman M*/ 18220bad9183SKris Buschelman 18238cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1824aa5a9175SDahai Guo 1825a23d5eceSKris Buschelman #undef __FUNCT__ 18264a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 18278cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1828b5df2d14SHong Zhang { 1829b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1830dfbe8321SBarry Smith PetscErrorCode ierr; 183194ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 1832b5df2d14SHong Zhang 1833b5df2d14SHong Zhang PetscFunctionBegin; 1834b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1835b0a32e0cSBarry Smith B->data = (void*)b; 1836b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1837b5df2d14SHong Zhang 1838b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1839b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1840b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1841b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 184226fbe8dcSKarl Rupp 1843ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1844ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1845b5df2d14SHong Zhang 1846b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1847854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 1848b5df2d14SHong Zhang 1849b5df2d14SHong Zhang /* build cache for off array entries formed */ 1850ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 185126fbe8dcSKarl Rupp 1852b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 18530298fd71SBarry Smith b->colmap = NULL; 18540298fd71SBarry Smith b->garray = NULL; 1855b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1856b5df2d14SHong Zhang 1857b5df2d14SHong Zhang /* stuff used in block assembly */ 1858b5df2d14SHong Zhang b->barray = 0; 1859b5df2d14SHong Zhang 1860b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1861b5df2d14SHong Zhang b->lvec = 0; 1862b5df2d14SHong Zhang b->Mvctx = 0; 186340781036SHong Zhang b->slvec0 = 0; 186440781036SHong Zhang b->slvec0b = 0; 186540781036SHong Zhang b->slvec1 = 0; 186640781036SHong Zhang b->slvec1a = 0; 186740781036SHong Zhang b->slvec1b = 0; 186840781036SHong Zhang b->sMvctx = 0; 1869b5df2d14SHong Zhang 1870b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1871b5df2d14SHong Zhang b->rowindices = 0; 1872b5df2d14SHong Zhang b->rowvalues = 0; 1873b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1874b5df2d14SHong Zhang 1875b5df2d14SHong Zhang /* hash table stuff */ 1876b5df2d14SHong Zhang b->ht = 0; 1877b5df2d14SHong Zhang b->hd = 0; 1878b5df2d14SHong Zhang b->ht_size = 0; 1879b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1880b5df2d14SHong Zhang b->ht_fact = 0; 1881b5df2d14SHong Zhang b->ht_total_ct = 0; 1882b5df2d14SHong Zhang b->ht_insert_ct = 0; 1883b5df2d14SHong Zhang 18847a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 18857a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 18867a868f3eSHong Zhang 188759ffdab8SBarry Smith b->in_loc = 0; 188859ffdab8SBarry Smith b->v_loc = 0; 188959ffdab8SBarry Smith b->n_loc = 0; 189094ae4db5SBarry Smith 1891bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1892bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1893bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1894bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1895bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1896bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 18976214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 18986214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 18996214f412SHong Zhang #endif 1900aa5a9175SDahai Guo 190123ce1328SBarry Smith B->symmetric = PETSC_TRUE; 190223ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 190323ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 190423ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 190526fbe8dcSKarl Rupp 190617667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 190794ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 190894ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 190994ae4db5SBarry Smith if (flg) { 191094ae4db5SBarry Smith PetscReal fact = 1.39; 191194ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 191294ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 191394ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 191494ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 191594ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 191694ae4db5SBarry Smith } 191794ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1918b5df2d14SHong Zhang PetscFunctionReturn(0); 1919b5df2d14SHong Zhang } 1920b5df2d14SHong Zhang 1921209238afSKris Buschelman /*MC 1922002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1923209238afSKris Buschelman 1924209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1925209238afSKris Buschelman and MATMPISBAIJ otherwise. 1926209238afSKris Buschelman 1927209238afSKris Buschelman Options Database Keys: 1928209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1929209238afSKris Buschelman 1930209238afSKris Buschelman Level: beginner 1931209238afSKris Buschelman 1932209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1933209238afSKris Buschelman M*/ 1934209238afSKris Buschelman 19354a2ae208SSatish Balay #undef __FUNCT__ 19364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1937b5df2d14SHong Zhang /*@C 1938b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1939b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1940b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1941b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1942b5df2d14SHong Zhang 1943b5df2d14SHong Zhang Collective on Mat 1944b5df2d14SHong Zhang 1945b5df2d14SHong Zhang Input Parameters: 19461c4f3114SJed Brown + B - the matrix 1947bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1948bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1949b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1950b5df2d14SHong Zhang submatrix (same for all local rows) 1951b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 19526d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 19530298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 195495742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1955b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1956b5df2d14SHong Zhang submatrix (same for all local rows). 1957b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1958c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 19590298fd71SBarry Smith (possibly different for each block row) or NULL. 1960b5df2d14SHong Zhang 1961b5df2d14SHong Zhang 1962b5df2d14SHong Zhang Options Database Keys: 1963b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1964b5df2d14SHong Zhang block calculations (much slower) 1965b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1966b5df2d14SHong Zhang 1967b5df2d14SHong Zhang Notes: 1968b5df2d14SHong Zhang 1969b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1970b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1971b5df2d14SHong Zhang 197249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 197349a6f317SBarry Smith 1974b5df2d14SHong Zhang Storage Information: 1975b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1976b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1977b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1978b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1979b5df2d14SHong Zhang 1980b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1981b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 19820298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1983b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1984b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1985b5df2d14SHong Zhang 1986aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1987aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1988aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1989aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1990aa95bbe8SBarry Smith 1991b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1992b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1993b5df2d14SHong Zhang 1994b5df2d14SHong Zhang .vb 1995b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1996a4b1a0f6SJed Brown -------------------------- 1997c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 1998c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 1999c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2000a4b1a0f6SJed Brown -------------------------- 2001b5df2d14SHong Zhang .ve 2002b5df2d14SHong Zhang 2003b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2004b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 20056d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20066d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2007b5df2d14SHong Zhang 20086d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20096d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2010c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2011c2fc9fa9SBarry Smith 2012b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2013b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2014b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2015b5df2d14SHong Zhang matrices. 2016b5df2d14SHong Zhang 2017b5df2d14SHong Zhang Level: intermediate 2018b5df2d14SHong Zhang 2019b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2020b5df2d14SHong Zhang 2021ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2022b5df2d14SHong Zhang @*/ 20237087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2024b5df2d14SHong Zhang { 20254ac538c5SBarry Smith PetscErrorCode ierr; 2026b5df2d14SHong Zhang 2027b5df2d14SHong Zhang PetscFunctionBegin; 20286ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20296ba663aaSJed Brown PetscValidType(B,1); 20306ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 20314ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2032b5df2d14SHong Zhang PetscFunctionReturn(0); 2033b5df2d14SHong Zhang } 2034b5df2d14SHong Zhang 20354a2ae208SSatish Balay #undef __FUNCT__ 203669b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2037a30f8f8cSSatish Balay /*@C 203869b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2039a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2040a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2041a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2042a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2043a30f8f8cSSatish Balay 2044a30f8f8cSSatish Balay Collective on MPI_Comm 2045a30f8f8cSSatish Balay 2046a30f8f8cSSatish Balay Input Parameters: 2047a30f8f8cSSatish Balay + comm - MPI communicator 2048bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2049bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2050a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2051a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2052a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2053a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2054a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2055a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2056a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2057a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2058a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2059a30f8f8cSSatish Balay submatrix (same for all local rows) 2060a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 20616d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 20620298fd71SBarry Smith (possibly different for each block block row) or NULL. 206395742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 206495742e49SBarry Smith set its value even if it is zero. 2065a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2066a30f8f8cSSatish Balay submatrix (same for all local rows). 2067a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2068a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 20690298fd71SBarry Smith each block row) or NULL. 2070a30f8f8cSSatish Balay 2071a30f8f8cSSatish Balay Output Parameter: 2072a30f8f8cSSatish Balay . A - the matrix 2073a30f8f8cSSatish Balay 2074a30f8f8cSSatish Balay Options Database Keys: 2075a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2076a30f8f8cSSatish Balay block calculations (much slower) 2077a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2078a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2079a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2080a30f8f8cSSatish Balay 2081175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2082ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2083175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2084175b88e8SBarry Smith 2085a30f8f8cSSatish Balay Notes: 2086d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20876d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2088d1be2dadSMatthew Knepley 2089a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2090a30f8f8cSSatish Balay (possibly both). 2091a30f8f8cSSatish Balay 2092a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2093a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2094a30f8f8cSSatish Balay 209549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 209649a6f317SBarry Smith 2097a30f8f8cSSatish Balay Storage Information: 2098a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2099a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2100a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2101a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2102a30f8f8cSSatish Balay 2103a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2104a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 21050298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2106a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2107a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2108a30f8f8cSSatish Balay 2109a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2110a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2111a30f8f8cSSatish Balay 2112a30f8f8cSSatish Balay .vb 2113a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2114a4b1a0f6SJed Brown -------------------------- 2115c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2116c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2117c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2118a4b1a0f6SJed Brown -------------------------- 2119a30f8f8cSSatish Balay .ve 2120a30f8f8cSSatish Balay 2121a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2122a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 21236d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 21246d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2125a30f8f8cSSatish Balay 21266d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 21276d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2128a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2129a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2130a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2131a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2132a30f8f8cSSatish Balay matrices. 2133a30f8f8cSSatish Balay 2134a30f8f8cSSatish Balay Level: intermediate 2135a30f8f8cSSatish Balay 2136a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2137a30f8f8cSSatish Balay 213869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2139a30f8f8cSSatish Balay @*/ 2140a30f8f8cSSatish Balay 214169b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2142a30f8f8cSSatish Balay { 21436849ba73SBarry Smith PetscErrorCode ierr; 21441302d50aSBarry Smith PetscMPIInt size; 2145a30f8f8cSSatish Balay 2146a30f8f8cSSatish Balay PetscFunctionBegin; 2147f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2148f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2149273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2150273d9f13SBarry Smith if (size > 1) { 2151b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2152b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2153273d9f13SBarry Smith } else { 2154273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2155273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2156273d9f13SBarry Smith } 2157a30f8f8cSSatish Balay PetscFunctionReturn(0); 2158a30f8f8cSSatish Balay } 2159a30f8f8cSSatish Balay 2160a30f8f8cSSatish Balay 21614a2ae208SSatish Balay #undef __FUNCT__ 21624a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 21636849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2164a30f8f8cSSatish Balay { 2165a30f8f8cSSatish Balay Mat mat; 2166a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2167dfbe8321SBarry Smith PetscErrorCode ierr; 2168d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2169387bc808SHong Zhang PetscScalar *array; 2170a30f8f8cSSatish Balay 2171a30f8f8cSSatish Balay PetscFunctionBegin; 2172a30f8f8cSSatish Balay *newmat = 0; 217326fbe8dcSKarl Rupp 2174ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2175d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 21767adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 21771d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 21781e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 21791e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2180e1b6402fSHong Zhang 2181d5f3da31SBarry Smith mat->factortype = matin->factortype; 2182273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 218382327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21847fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21857fff6886SHong Zhang 2186b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2187a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2188a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2189a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2190a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2191a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2192a30f8f8cSSatish Balay 2193899cda47SBarry Smith 2194a30f8f8cSSatish Balay a->size = oldmat->size; 2195a30f8f8cSSatish Balay a->rank = oldmat->rank; 2196a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2197a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2198a30f8f8cSSatish Balay a->rowindices = 0; 2199a30f8f8cSSatish Balay a->rowvalues = 0; 2200a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2201a30f8f8cSSatish Balay a->barray = 0; 2202899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2203899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2204899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2205899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2206a30f8f8cSSatish Balay 2207a30f8f8cSSatish Balay /* hash table stuff */ 2208a30f8f8cSSatish Balay a->ht = 0; 2209a30f8f8cSSatish Balay a->hd = 0; 2210a30f8f8cSSatish Balay a->ht_size = 0; 2211a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2212a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2213a30f8f8cSSatish Balay a->ht_total_ct = 0; 2214a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2215a30f8f8cSSatish Balay 2216899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2217a30f8f8cSSatish Balay if (oldmat->colmap) { 2218a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2219a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay #else 2221854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 22223bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 22231302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2224a30f8f8cSSatish Balay #endif 2225a30f8f8cSSatish Balay } else a->colmap = 0; 2226387bc808SHong Zhang 2227a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2228785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 22293bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 22301302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2231a30f8f8cSSatish Balay } else a->garray = 0; 2232a30f8f8cSSatish Balay 2233ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2234a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 22353bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2236a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 22373bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 223882327fa8SHong Zhang 223982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 22403bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 224182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 22423bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2243387bc808SHong Zhang 2244387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 22451ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2246778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2247778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 22481ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 22491ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2250778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 22511ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 22523bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 22533bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 22543bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 22553bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 22563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2257387bc808SHong Zhang 2258387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2259387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2260387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 22613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 226282327fa8SHong Zhang 2263a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 22643bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 22663bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2267140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2268a30f8f8cSSatish Balay *newmat = mat; 2269a30f8f8cSSatish Balay PetscFunctionReturn(0); 2270a30f8f8cSSatish Balay } 2271a30f8f8cSSatish Balay 22724a2ae208SSatish Balay #undef __FUNCT__ 22735bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2274112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 227595936485SShri Abhyankar { 227695936485SShri Abhyankar PetscErrorCode ierr; 227795936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 227895936485SShri Abhyankar PetscScalar *vals,*buf; 2279ce94432eSBarry Smith MPI_Comm comm; 228095936485SShri Abhyankar MPI_Status status; 2281adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2282adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 228395936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 22843059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 228595936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 228695936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 228795936485SShri Abhyankar int fd; 228895936485SShri Abhyankar 228995936485SShri Abhyankar PetscFunctionBegin; 2290ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 22910298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 22920298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 229395936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 22943059b6faSBarry Smith if (bs < 0) bs = 1; 229595936485SShri Abhyankar 229695936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 229795936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 229895936485SShri Abhyankar if (!rank) { 229995936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 230095936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 230195936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 230295936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 230395936485SShri Abhyankar } 230495936485SShri Abhyankar 230595936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 230695936485SShri Abhyankar 230795936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 230826fbe8dcSKarl Rupp M = header[1]; 230926fbe8dcSKarl Rupp N = header[2]; 231095936485SShri Abhyankar 231195936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 231295936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 231395936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 231495936485SShri Abhyankar 231595936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 231695936485SShri Abhyankar if (sizesset) { 231795936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 231895936485SShri Abhyankar } 2319abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2320abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 232195936485SShri Abhyankar 232295936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 232395936485SShri Abhyankar 232495936485SShri Abhyankar /* 232595936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 232695936485SShri Abhyankar divisible by the blocksize 232795936485SShri Abhyankar */ 232895936485SShri Abhyankar Mbs = M/bs; 232995936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 233095936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 233195936485SShri Abhyankar else Mbs++; 233295936485SShri Abhyankar if (extra_rows &&!rank) { 233395936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 233495936485SShri Abhyankar } 233595936485SShri Abhyankar 233695936485SShri Abhyankar /* determine ownership of all rows */ 233795936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 233895936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 233995936485SShri Abhyankar m = mbs*bs; 234095936485SShri Abhyankar } else { /* User Set */ 234195936485SShri Abhyankar m = newmat->rmap->n; 234295936485SShri Abhyankar mbs = m/bs; 234395936485SShri Abhyankar } 2344dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 23454dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 234695936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 234795936485SShri Abhyankar rowners[0] = 0; 234895936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 234995936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 235095936485SShri Abhyankar rstart = rowners[rank]; 235195936485SShri Abhyankar rend = rowners[rank+1]; 235295936485SShri Abhyankar 235395936485SShri Abhyankar /* distribute row lengths to all processors */ 2354785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 235595936485SShri Abhyankar if (!rank) { 2356854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 235795936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 235895936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2359785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 236095936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 236195936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 236295936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 236395936485SShri Abhyankar } else { 236495936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 236595936485SShri Abhyankar } 236695936485SShri Abhyankar 236795936485SShri Abhyankar if (!rank) { /* procs[0] */ 236895936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2369785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 237095936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 237195936485SShri Abhyankar for (i=0; i<size; i++) { 237295936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 237395936485SShri Abhyankar procsnz[i] += rowlengths[j]; 237495936485SShri Abhyankar } 237595936485SShri Abhyankar } 237695936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 237795936485SShri Abhyankar 237895936485SShri Abhyankar /* determine max buffer needed and allocate it */ 237995936485SShri Abhyankar maxnz = 0; 238095936485SShri Abhyankar for (i=0; i<size; i++) { 238195936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 238295936485SShri Abhyankar } 2383785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 238495936485SShri Abhyankar 238595936485SShri Abhyankar /* read in my part of the matrix column indices */ 238695936485SShri Abhyankar nz = procsnz[0]; 2387785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 238895936485SShri Abhyankar mycols = ibuf; 238995936485SShri Abhyankar if (size == 1) nz -= extra_rows; 239095936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 239126fbe8dcSKarl Rupp if (size == 1) { 239226fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 239326fbe8dcSKarl Rupp } 239495936485SShri Abhyankar 239595936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 239695936485SShri Abhyankar for (i=1; i<size-1; i++) { 239795936485SShri Abhyankar nz = procsnz[i]; 239895936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 239995936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 240095936485SShri Abhyankar } 240195936485SShri Abhyankar /* read in the stuff for the last proc */ 240295936485SShri Abhyankar if (size != 1) { 240395936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 240495936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 240595936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 240695936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 240795936485SShri Abhyankar } 240895936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 240995936485SShri Abhyankar } else { /* procs[i], i>0 */ 241095936485SShri Abhyankar /* determine buffer space needed for message */ 241195936485SShri Abhyankar nz = 0; 241226fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2413785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 241495936485SShri Abhyankar mycols = ibuf; 241595936485SShri Abhyankar /* receive message of column indices*/ 241695936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 241795936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 241895936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 241995936485SShri Abhyankar } 242095936485SShri Abhyankar 242195936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2422dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2423dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 242495936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 242595936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 242695936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 242795936485SShri Abhyankar rowcount = 0; 242895936485SShri Abhyankar nzcount = 0; 242995936485SShri Abhyankar for (i=0; i<mbs; i++) { 243095936485SShri Abhyankar dcount = 0; 243195936485SShri Abhyankar odcount = 0; 243295936485SShri Abhyankar for (j=0; j<bs; j++) { 243395936485SShri Abhyankar kmax = locrowlens[rowcount]; 243495936485SShri Abhyankar for (k=0; k<kmax; k++) { 243595936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 243695936485SShri Abhyankar if (!mask[tmp]) { 243795936485SShri Abhyankar mask[tmp] = 1; 243895936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 243995936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 244095936485SShri Abhyankar } 244195936485SShri Abhyankar } 244295936485SShri Abhyankar rowcount++; 244395936485SShri Abhyankar } 244495936485SShri Abhyankar 244595936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 244695936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 244795936485SShri Abhyankar 244895936485SShri Abhyankar /* zero out the mask elements we set */ 244995936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 245095936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 245195936485SShri Abhyankar } 245295936485SShri Abhyankar if (!sizesset) { 245395936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 245495936485SShri Abhyankar } 245595936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 24566816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 245795936485SShri Abhyankar 245895936485SShri Abhyankar if (!rank) { 2459785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 246095936485SShri Abhyankar /* read in my part of the matrix numerical values */ 246195936485SShri Abhyankar nz = procsnz[0]; 246295936485SShri Abhyankar vals = buf; 246395936485SShri Abhyankar mycols = ibuf; 246495936485SShri Abhyankar if (size == 1) nz -= extra_rows; 246595936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 246626fbe8dcSKarl Rupp if (size == 1) { 246726fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 246826fbe8dcSKarl Rupp } 246995936485SShri Abhyankar 247095936485SShri Abhyankar /* insert into matrix */ 247195936485SShri Abhyankar jj = rstart*bs; 247295936485SShri Abhyankar for (i=0; i<m; i++) { 247395936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 247495936485SShri Abhyankar mycols += locrowlens[i]; 247595936485SShri Abhyankar vals += locrowlens[i]; 247695936485SShri Abhyankar jj++; 247795936485SShri Abhyankar } 247895936485SShri Abhyankar 247995936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 248095936485SShri Abhyankar for (i=1; i<size-1; i++) { 248195936485SShri Abhyankar nz = procsnz[i]; 248295936485SShri Abhyankar vals = buf; 248395936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 248495936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 248595936485SShri Abhyankar } 248695936485SShri Abhyankar /* the last proc */ 248795936485SShri Abhyankar if (size != 1) { 248895936485SShri Abhyankar nz = procsnz[i] - extra_rows; 248995936485SShri Abhyankar vals = buf; 249095936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 249195936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 249295936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 249395936485SShri Abhyankar } 249495936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 249595936485SShri Abhyankar 249695936485SShri Abhyankar } else { 249795936485SShri Abhyankar /* receive numeric values */ 2498785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 249995936485SShri Abhyankar 250095936485SShri Abhyankar /* receive message of values*/ 250195936485SShri Abhyankar vals = buf; 250295936485SShri Abhyankar mycols = ibuf; 250395936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 250495936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 250595936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 250695936485SShri Abhyankar 250795936485SShri Abhyankar /* insert into matrix */ 250895936485SShri Abhyankar jj = rstart*bs; 250995936485SShri Abhyankar for (i=0; i<m; i++) { 251095936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 251195936485SShri Abhyankar mycols += locrowlens[i]; 251295936485SShri Abhyankar vals += locrowlens[i]; 251395936485SShri Abhyankar jj++; 251495936485SShri Abhyankar } 251595936485SShri Abhyankar } 251695936485SShri Abhyankar 251795936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 251895936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 251995936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 252095936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 252195936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 252295936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 252395936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 252495936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 252595936485SShri Abhyankar PetscFunctionReturn(0); 252695936485SShri Abhyankar } 252795936485SShri Abhyankar 252895936485SShri Abhyankar #undef __FUNCT__ 25294a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2530dcf5cc72SBarry Smith /*XXXXX@ 2531a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2532a30f8f8cSSatish Balay 2533a30f8f8cSSatish Balay Input Parameters: 2534a30f8f8cSSatish Balay . mat - the matrix 2535a30f8f8cSSatish Balay . fact - factor 2536a30f8f8cSSatish Balay 2537c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2538a30f8f8cSSatish Balay 2539a30f8f8cSSatish Balay Level: advanced 2540a30f8f8cSSatish Balay 2541a30f8f8cSSatish Balay Notes: 2542a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2543a30f8f8cSSatish Balay 2544a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2545a30f8f8cSSatish Balay 2546a30f8f8cSSatish Balay .seealso: MatSetOption() 2547dcf5cc72SBarry Smith @XXXXX*/ 2548dcf5cc72SBarry Smith 254924d5174aSHong Zhang 25504a2ae208SSatish Balay #undef __FUNCT__ 2551985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2552985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 255324d5174aSHong Zhang { 255424d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2555f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2556ca54ac64SHong Zhang PetscReal atmp; 255787828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2558dfbe8321SBarry Smith PetscErrorCode ierr; 25591302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25601302d50aSBarry Smith PetscMPIInt rank,size; 25611302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 256287828ca2SBarry Smith PetscScalar *va; 25638a1c53f2SBarry Smith MatScalar *ba; 2564f4c0e9e4SHong Zhang MPI_Status stat; 256524d5174aSHong Zhang 256624d5174aSHong Zhang PetscFunctionBegin; 2567e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 25680298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 25691ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2570f4c0e9e4SHong Zhang 2571ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2572ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2573f4c0e9e4SHong Zhang 2574d0f46423SBarry Smith bs = A->rmap->bs; 2575f4c0e9e4SHong Zhang mbs = a->mbs; 2576f4c0e9e4SHong Zhang Mbs = a->Mbs; 2577f4c0e9e4SHong Zhang ba = b->a; 2578f4c0e9e4SHong Zhang bi = b->i; 2579f4c0e9e4SHong Zhang bj = b->j; 2580f4c0e9e4SHong Zhang 2581f4c0e9e4SHong Zhang /* find ownerships */ 2582d0f46423SBarry Smith rowners_bs = A->rmap->range; 2583f4c0e9e4SHong Zhang 2584f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2585785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2586ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2587f4c0e9e4SHong Zhang 2588f4c0e9e4SHong Zhang /* row_max for B */ 2589b8475685SHong Zhang if (rank != size-1) { 2590f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2591f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2592f4c0e9e4SHong Zhang brow = bs*i; 2593f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2594f4c0e9e4SHong Zhang bcol = bs*(*bj); 2595f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2596ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 259704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2598f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2599f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2600ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2601ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2602f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2603f4c0e9e4SHong Zhang } 2604f4c0e9e4SHong Zhang } 2605f4c0e9e4SHong Zhang bj++; 2606f4c0e9e4SHong Zhang } 2607f4c0e9e4SHong Zhang } 2608f4c0e9e4SHong Zhang 2609f4c0e9e4SHong Zhang /* send values to its owners */ 2610f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2611f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2612ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2613ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2614ca54ac64SHong Zhang } 2615f4c0e9e4SHong Zhang } 2616f4c0e9e4SHong Zhang 2617f4c0e9e4SHong Zhang /* receive values */ 2618ca54ac64SHong Zhang if (rank) { 2619f4c0e9e4SHong Zhang rvalues = work; 2620ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2621f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2622ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2623f4c0e9e4SHong Zhang /* process values */ 2624f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2625ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2626f4c0e9e4SHong Zhang } 2627f4c0e9e4SHong Zhang } 2628ca54ac64SHong Zhang } 2629f4c0e9e4SHong Zhang 26301ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2631ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 263224d5174aSHong Zhang PetscFunctionReturn(0); 263324d5174aSHong Zhang } 26342798e883SHong Zhang 26352798e883SHong Zhang #undef __FUNCT__ 263641f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 263741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 26382798e883SHong Zhang { 26392798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2640dfbe8321SBarry Smith PetscErrorCode ierr; 2641d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 26423649974fSBarry Smith PetscScalar *x,*ptr,*from; 2643ffe4fb16SHong Zhang Vec bb1; 26443649974fSBarry Smith const PetscScalar *b; 2645ffe4fb16SHong Zhang 2646ffe4fb16SHong Zhang PetscFunctionBegin; 2647e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2648e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2649ffe4fb16SHong Zhang 2650a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 265141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2652a2b30743SBarry Smith PetscFunctionReturn(0); 2653a2b30743SBarry Smith } 2654a2b30743SBarry Smith 2655ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2656ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 265741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2658ffe4fb16SHong Zhang its--; 2659ffe4fb16SHong Zhang } 2660ffe4fb16SHong Zhang 2661ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2662ffe4fb16SHong Zhang while (its--) { 2663ffe4fb16SHong Zhang 2664ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2665ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2666ffe4fb16SHong Zhang 2667ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26681ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 26691ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2670ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26711ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2672ffe4fb16SHong Zhang 2673efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2674ffe4fb16SHong Zhang 2675ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26761ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 26773649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2678ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26791ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2680ffe4fb16SHong Zhang 2681ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2682fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2683ffe4fb16SHong Zhang 2684ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26851ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2686a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2687ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2688ffe4fb16SHong Zhang 2689ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2690ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2691ffe4fb16SHong Zhang 2692ffe4fb16SHong Zhang /* local diagonal sweep */ 269341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2694ffe4fb16SHong Zhang } 26956bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2696fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 269741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2698fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 269941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2700fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2701fa22f6d0SBarry Smith Vec xx1; 2702ace3abfcSBarry Smith PetscBool hasop; 270320f1ed55SBarry Smith const PetscScalar *diag; 2704887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 270520f1ed55SBarry Smith PetscInt i,n; 2706fa22f6d0SBarry Smith 2707fa22f6d0SBarry Smith if (!mat->xx1) { 2708fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2709fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2710fa22f6d0SBarry Smith } 2711fa22f6d0SBarry Smith xx1 = mat->xx1; 2712fa22f6d0SBarry Smith bb1 = mat->bb1; 2713fa22f6d0SBarry Smith 271441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2715fa22f6d0SBarry Smith 2716fa22f6d0SBarry Smith if (!mat->diag) { 2717effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27182a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2719fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2720fa22f6d0SBarry Smith } 2721fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2722fa22f6d0SBarry Smith 2723fa22f6d0SBarry Smith if (hasop) { 2724fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2725887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 272620f1ed55SBarry Smith } else { 272720f1ed55SBarry Smith /* 272820f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 272920f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2730887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 273120f1ed55SBarry Smith */ 273220f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27333649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27343649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 273520f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 273620f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2737887ee2caSBarry Smith if (omega == 1.0) { 273826fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 273920f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2740887ee2caSBarry Smith } else { 274126fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2742887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2743887ee2caSBarry Smith } 274420f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27453649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27463649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 274720f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 274820f1ed55SBarry Smith } 2749fa22f6d0SBarry Smith 2750fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2751fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2752fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2753fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2754fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2755fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2756fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2757fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2758fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2759fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2760effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2761fa22f6d0SBarry Smith 2762fa22f6d0SBarry Smith /* local sweep */ 276341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2764fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2765f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2766ffe4fb16SHong Zhang PetscFunctionReturn(0); 2767ffe4fb16SHong Zhang } 2768ffe4fb16SHong Zhang 2769ffe4fb16SHong Zhang #undef __FUNCT__ 277041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 277141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2772ffe4fb16SHong Zhang { 2773ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2774dfbe8321SBarry Smith PetscErrorCode ierr; 27752798e883SHong Zhang Vec lvec1,bb1; 27762798e883SHong Zhang 27772798e883SHong Zhang PetscFunctionBegin; 2778e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2779e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 27802798e883SHong Zhang 2781c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 27822798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 278341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27842798e883SHong Zhang its--; 27852798e883SHong Zhang } 27862798e883SHong Zhang 27872798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27882798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27892798e883SHong Zhang while (its--) { 2790ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27912798e883SHong Zhang 27922798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27932798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2794efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27952798e883SHong Zhang 2796ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27972798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2798ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27992798e883SHong Zhang 28002798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2801efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 28022798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 28032798e883SHong Zhang 2804ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 28052798e883SHong Zhang 2806c14dc6b6SHong Zhang /* diagonal sweep */ 280741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 28082798e883SHong Zhang } 28096bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 28106bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 28116bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 28122798e883SHong Zhang PetscFunctionReturn(0); 28132798e883SHong Zhang } 28142798e883SHong Zhang 2815dfb205c3SBarry Smith #undef __FUNCT__ 2816dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2817dfb205c3SBarry Smith /*@ 2818dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2819dfb205c3SBarry Smith CSR format the local rows. 2820dfb205c3SBarry Smith 2821dfb205c3SBarry Smith Collective on MPI_Comm 2822dfb205c3SBarry Smith 2823dfb205c3SBarry Smith Input Parameters: 2824dfb205c3SBarry Smith + comm - MPI communicator 2825dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2826dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2827dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2828dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2829dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2830dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2831dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2832dfb205c3SBarry Smith . i - row indices 2833dfb205c3SBarry Smith . j - column indices 2834dfb205c3SBarry Smith - a - matrix values 2835dfb205c3SBarry Smith 2836dfb205c3SBarry Smith Output Parameter: 2837dfb205c3SBarry Smith . mat - the matrix 2838dfb205c3SBarry Smith 2839dfb205c3SBarry Smith Level: intermediate 2840dfb205c3SBarry Smith 2841dfb205c3SBarry Smith Notes: 2842dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2843dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2844dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2845dfb205c3SBarry Smith 2846dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2847dfb205c3SBarry Smith 2848dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2849dfb205c3SBarry Smith 2850dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 285169b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2852dfb205c3SBarry Smith @*/ 28537087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2854dfb205c3SBarry Smith { 2855dfb205c3SBarry Smith PetscErrorCode ierr; 2856dfb205c3SBarry Smith 2857dfb205c3SBarry Smith 2858dfb205c3SBarry Smith PetscFunctionBegin; 2859f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2860dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2861dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2862dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2863dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2864dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2865dfb205c3SBarry Smith PetscFunctionReturn(0); 2866dfb205c3SBarry Smith } 2867dfb205c3SBarry Smith 2868dfb205c3SBarry Smith 2869dfb205c3SBarry Smith #undef __FUNCT__ 2870dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2871dfb205c3SBarry Smith /*@C 2872dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2873dfb205c3SBarry Smith (the default parallel PETSc format). 2874dfb205c3SBarry Smith 2875dfb205c3SBarry Smith Collective on MPI_Comm 2876dfb205c3SBarry Smith 2877dfb205c3SBarry Smith Input Parameters: 28781c4f3114SJed Brown + B - the matrix 2879dfb205c3SBarry Smith . bs - the block size 2880dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2881dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2882dfb205c3SBarry Smith - v - optional values in the matrix 2883dfb205c3SBarry Smith 2884dfb205c3SBarry Smith Level: developer 2885dfb205c3SBarry Smith 2886dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2887dfb205c3SBarry Smith 288869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2889dfb205c3SBarry Smith @*/ 28907087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2891dfb205c3SBarry Smith { 28924ac538c5SBarry Smith PetscErrorCode ierr; 2893dfb205c3SBarry Smith 2894dfb205c3SBarry Smith PetscFunctionBegin; 28954ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2896dfb205c3SBarry Smith PetscFunctionReturn(0); 2897dfb205c3SBarry Smith } 2898dfb205c3SBarry Smith 2899de4b53ebSHong Zhang #undef __FUNCT__ 290010c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 290110c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 29024dcd73b1SHong Zhang { 29034dcd73b1SHong Zhang PetscErrorCode ierr; 290410c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 290510c56fdeSHong Zhang PetscInt *indx; 290610c56fdeSHong Zhang PetscScalar *values; 2907dfb205c3SBarry Smith 29084dcd73b1SHong Zhang PetscFunctionBegin; 29094dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 291010c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 291110c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 291210c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 291310c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 29144dcd73b1SHong Zhang 291510c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 291610c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 291710c56fdeSHong Zhang if (n == PETSC_DECIDE) { 291810c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 291910c56fdeSHong Zhang } 292010c56fdeSHong Zhang /* Check sum(n) = Nbs */ 292110c56fdeSHong Zhang ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 292210c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 292310c56fdeSHong Zhang 292410c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 292510c56fdeSHong Zhang rstart -= mbs; 29264dcd73b1SHong Zhang 29274dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 292810c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 2929e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 293010c56fdeSHong Zhang for (i=0; i<mbs; i++) { 29314dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 29324dcd73b1SHong Zhang nnz = nnz/bs; 29334dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 29344dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 29354dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 29364dcd73b1SHong Zhang } 2937e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 29384dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 29394dcd73b1SHong Zhang 29404dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 294110c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 29424dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 29434dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 29444dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 29454dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 29464dcd73b1SHong Zhang } 29474dcd73b1SHong Zhang 294810c56fdeSHong Zhang /* numeric phase */ 29494dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 295010c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 29514dcd73b1SHong Zhang 2952e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 29534dcd73b1SHong Zhang for (i=0; i<m; i++) { 29544dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29554dcd73b1SHong Zhang Ii = i + rstart; 295610c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 29574dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29584dcd73b1SHong Zhang } 2959e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 296010c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 296110c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29624dcd73b1SHong Zhang PetscFunctionReturn(0); 29634dcd73b1SHong Zhang } 2964