xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 36bd2089a7f8ccbabf71bbd7feb8b0ce27470125)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
86214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
104a2ae208SSatish Balay #undef __FUNCT__
114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
127087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
13a30f8f8cSSatish Balay {
14f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
15dfbe8321SBarry Smith   PetscErrorCode ierr;
16a30f8f8cSSatish Balay 
17a30f8f8cSSatish Balay   PetscFunctionBegin;
18a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
19a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
20a30f8f8cSSatish Balay   PetscFunctionReturn(0);
21a30f8f8cSSatish Balay }
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
36d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
37a30f8f8cSSatish Balay   { \
38a30f8f8cSSatish Balay  \
39a30f8f8cSSatish Balay     brow = row/bs;  \
40a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
41a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
42a30f8f8cSSatish Balay     bcol = col/bs; \
43a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
44a30f8f8cSSatish Balay     low  = 0; high = nrow; \
45a30f8f8cSSatish Balay     while (high-low > 3) { \
46a30f8f8cSSatish Balay       t = (low+high)/2; \
47a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
48a30f8f8cSSatish Balay       else              low  = t; \
49a30f8f8cSSatish Balay     } \
50a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
51a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
52a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
53a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
54a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
55a30f8f8cSSatish Balay         else                    *bap  = value;  \
56a30f8f8cSSatish Balay         goto a_noinsert; \
57a30f8f8cSSatish Balay       } \
58a30f8f8cSSatish Balay     } \
59a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
60d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
61fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
62a30f8f8cSSatish Balay     N = nrow++ - 1;  \
63a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
64a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
65a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
66a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
67a30f8f8cSSatish Balay     } \
68a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
69a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
70a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
71e56f5c9eSBarry Smith     A->nonzerostate++;\
72a30f8f8cSSatish Balay a_noinsert:; \
73a30f8f8cSSatish Balay     ailen[brow] = nrow; \
74a30f8f8cSSatish Balay   }
75e5e170daSBarry Smith 
76d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
77a30f8f8cSSatish Balay   { \
78a30f8f8cSSatish Balay     brow = row/bs;  \
79a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
80a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
81a30f8f8cSSatish Balay     bcol = col/bs; \
82a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
83a30f8f8cSSatish Balay     low  = 0; high = nrow; \
84a30f8f8cSSatish Balay     while (high-low > 3) { \
85a30f8f8cSSatish Balay       t = (low+high)/2; \
86a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
87a30f8f8cSSatish Balay       else              low  = t; \
88a30f8f8cSSatish Balay     } \
89a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
90a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
91a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
92a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
93a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
94a30f8f8cSSatish Balay         else                    *bap  = value;  \
95a30f8f8cSSatish Balay         goto b_noinsert; \
96a30f8f8cSSatish Balay       } \
97a30f8f8cSSatish Balay     } \
98a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
99d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
100fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
101a30f8f8cSSatish Balay     N = nrow++ - 1;  \
102a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
103a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
104a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
105a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
106a30f8f8cSSatish Balay     } \
107a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
108a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
109a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
110e56f5c9eSBarry Smith     B->nonzerostate++;\
111a30f8f8cSSatish Balay b_noinsert:; \
112a30f8f8cSSatish Balay     bilen[brow] = nrow; \
113a30f8f8cSSatish Balay   }
114a30f8f8cSSatish Balay 
115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
116a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
117a30f8f8cSSatish Balay */
1184a2ae208SSatish Balay #undef __FUNCT__
119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
121a30f8f8cSSatish Balay {
122a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
123a30f8f8cSSatish Balay   MatScalar      value;
124ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
125dfbe8321SBarry Smith   PetscErrorCode ierr;
1261302d50aSBarry Smith   PetscInt       i,j,row,col;
127d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
128d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
129d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   /* Some Variables required in the macro */
132a30f8f8cSSatish Balay   Mat          A     = baij->A;
133a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1341302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
135a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
136a30f8f8cSSatish Balay 
137a30f8f8cSSatish Balay   Mat         B     = baij->B;
138a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1391302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
140a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
141a30f8f8cSSatish Balay 
1421302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1431302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
144a30f8f8cSSatish Balay   MatScalar *ap,*bap;
145a30f8f8cSSatish Balay 
146a30f8f8cSSatish Balay   /* for stash */
1470298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1480298fd71SBarry Smith   MatScalar *v_loc = NULL;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   PetscFunctionBegin;
151a30f8f8cSSatish Balay   if (!baij->donotstash) {
15259ffdab8SBarry Smith     if (n > baij->n_loc) {
15359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
15459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
155785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
156785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15726fbe8dcSKarl Rupp 
15859ffdab8SBarry Smith       baij->n_loc = n;
15959ffdab8SBarry Smith     }
16059ffdab8SBarry Smith     in_loc = baij->in_loc;
16159ffdab8SBarry Smith     v_loc  = baij->v_loc;
162a30f8f8cSSatish Balay   }
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
165a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
167e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
168a30f8f8cSSatish Balay #endif
169a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
170a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
171a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
17201b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
17301b2bd88SHong Zhang           if (a->ignore_ltriangular) {
17401b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
17526fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17601b2bd88SHong Zhang         }
177a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
178a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
179a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
180a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
181db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
182db4deed7SKarl Rupp           else             value = v[i+j*m];
183d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
184a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
185a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
187cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
188a30f8f8cSSatish Balay #endif
189a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
190a30f8f8cSSatish Balay           if (mat->was_assembled) {
191a30f8f8cSSatish Balay             if (!baij->colmap) {
192ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
193a30f8f8cSSatish Balay             }
194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
195a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19671730473SSatish Balay             col  = col - 1;
197a30f8f8cSSatish Balay #else
19871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
199a30f8f8cSSatish Balay #endif
200a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
201ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
202a30f8f8cSSatish Balay               col  =  in[j];
203a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
204a30f8f8cSSatish Balay               B    = baij->B;
205a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
206a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
207a30f8f8cSSatish Balay               ba   = b->a;
20871730473SSatish Balay             } else col += in[j]%bs;
209a30f8f8cSSatish Balay           } else col = in[j];
210db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
211db4deed7SKarl Rupp           else             value = v[i+j*m];
212d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
213a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
214a30f8f8cSSatish Balay         }
215a30f8f8cSSatish Balay       }
216a30f8f8cSSatish Balay     } else {  /* off processor entry */
2174cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
218a30f8f8cSSatish Balay       if (!baij->donotstash) {
2195080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
220a30f8f8cSSatish Balay         n_loc          = 0;
221a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
222f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
223a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
224a30f8f8cSSatish Balay           if (roworiented) {
225a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
226a30f8f8cSSatish Balay           } else {
227a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
228a30f8f8cSSatish Balay           }
229a30f8f8cSSatish Balay           n_loc++;
230a30f8f8cSSatish Balay         }
231b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     }
234a30f8f8cSSatish Balay   }
235a30f8f8cSSatish Balay   PetscFunctionReturn(0);
236a30f8f8cSSatish Balay }
237a30f8f8cSSatish Balay 
2384a2ae208SSatish Balay #undef __FUNCT__
239*36bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined"
240*36bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
241*36bd2089SBarry Smith {
242*36bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
243*36bd2089SBarry Smith   PetscErrorCode    ierr;
244*36bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
245*36bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
246*36bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
247*36bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
248*36bd2089SBarry Smith   const PetscScalar *value     = v;
249*36bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
250*36bd2089SBarry Smith 
251*36bd2089SBarry Smith   PetscFunctionBegin;
252*36bd2089SBarry Smith   if (col < row) {
253*36bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
254*36bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
255*36bd2089SBarry Smith   }
256*36bd2089SBarry Smith   rp   = aj + ai[row];
257*36bd2089SBarry Smith   ap   = aa + bs2*ai[row];
258*36bd2089SBarry Smith   rmax = imax[row];
259*36bd2089SBarry Smith   nrow = ailen[row];
260*36bd2089SBarry Smith   value = v;
261*36bd2089SBarry Smith   low   = 0;
262*36bd2089SBarry Smith   high  = nrow;
263*36bd2089SBarry Smith 
264*36bd2089SBarry Smith   while (high-low > 7) {
265*36bd2089SBarry Smith     t = (low+high)/2;
266*36bd2089SBarry Smith     if (rp[t] > col) high = t;
267*36bd2089SBarry Smith     else             low  = t;
268*36bd2089SBarry Smith   }
269*36bd2089SBarry Smith   for (i=low; i<high; i++) {
270*36bd2089SBarry Smith     if (rp[i] > col) break;
271*36bd2089SBarry Smith     if (rp[i] == col) {
272*36bd2089SBarry Smith       bap = ap +  bs2*i;
273*36bd2089SBarry Smith       if (roworiented) {
274*36bd2089SBarry Smith         if (is == ADD_VALUES) {
275*36bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
276*36bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
277*36bd2089SBarry Smith               bap[jj] += *value++;
278*36bd2089SBarry Smith             }
279*36bd2089SBarry Smith           }
280*36bd2089SBarry Smith         } else {
281*36bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
282*36bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
283*36bd2089SBarry Smith               bap[jj] = *value++;
284*36bd2089SBarry Smith             }
285*36bd2089SBarry Smith           }
286*36bd2089SBarry Smith         }
287*36bd2089SBarry Smith       } else {
288*36bd2089SBarry Smith         if (is == ADD_VALUES) {
289*36bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
290*36bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
291*36bd2089SBarry Smith               *bap++ += *value++;
292*36bd2089SBarry Smith             }
293*36bd2089SBarry Smith           }
294*36bd2089SBarry Smith         } else {
295*36bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
296*36bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
297*36bd2089SBarry Smith               *bap++  = *value++;
298*36bd2089SBarry Smith             }
299*36bd2089SBarry Smith           }
300*36bd2089SBarry Smith         }
301*36bd2089SBarry Smith       }
302*36bd2089SBarry Smith       goto noinsert2;
303*36bd2089SBarry Smith     }
304*36bd2089SBarry Smith   }
305*36bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
306*36bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
307*36bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
308*36bd2089SBarry Smith   N = nrow++ - 1; high++;
309*36bd2089SBarry Smith   /* shift up all the later entries in this row */
310*36bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
311*36bd2089SBarry Smith     rp[ii+1] = rp[ii];
312*36bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
313*36bd2089SBarry Smith   }
314*36bd2089SBarry Smith   if (N >= i) {
315*36bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
316*36bd2089SBarry Smith   }
317*36bd2089SBarry Smith   rp[i] = col;
318*36bd2089SBarry Smith   bap   = ap +  bs2*i;
319*36bd2089SBarry Smith   if (roworiented) {
320*36bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
321*36bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
322*36bd2089SBarry Smith         bap[jj] = *value++;
323*36bd2089SBarry Smith       }
324*36bd2089SBarry Smith     }
325*36bd2089SBarry Smith   } else {
326*36bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
327*36bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
328*36bd2089SBarry Smith         *bap++ = *value++;
329*36bd2089SBarry Smith       }
330*36bd2089SBarry Smith     }
331*36bd2089SBarry Smith   }
332*36bd2089SBarry Smith   noinsert2:;
333*36bd2089SBarry Smith   ailen[row] = nrow;
334*36bd2089SBarry Smith   PetscFunctionReturn(0);
335*36bd2089SBarry Smith }
336*36bd2089SBarry Smith 
337*36bd2089SBarry Smith #undef __FUNCT__
338*36bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined"
339*36bd2089SBarry Smith /*
340*36bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
341*36bd2089SBarry Smith */
342*36bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
343*36bd2089SBarry Smith {
344*36bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
345*36bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
346*36bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
347*36bd2089SBarry Smith   PetscErrorCode    ierr;
348*36bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
349*36bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
350*36bd2089SBarry Smith   const PetscScalar *value     = v;
351*36bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
352*36bd2089SBarry Smith 
353*36bd2089SBarry Smith   PetscFunctionBegin;
354*36bd2089SBarry Smith   rp   = aj + ai[row];
355*36bd2089SBarry Smith   ap   = aa + bs2*ai[row];
356*36bd2089SBarry Smith   rmax = imax[row];
357*36bd2089SBarry Smith   nrow = ailen[row];
358*36bd2089SBarry Smith   low  = 0;
359*36bd2089SBarry Smith   high = nrow;
360*36bd2089SBarry Smith   value = v;
361*36bd2089SBarry Smith   while (high-low > 7) {
362*36bd2089SBarry Smith     t = (low+high)/2;
363*36bd2089SBarry Smith     if (rp[t] > col) high = t;
364*36bd2089SBarry Smith     else             low  = t;
365*36bd2089SBarry Smith   }
366*36bd2089SBarry Smith   for (i=low; i<high; i++) {
367*36bd2089SBarry Smith     if (rp[i] > col) break;
368*36bd2089SBarry Smith     if (rp[i] == col) {
369*36bd2089SBarry Smith       bap = ap +  bs2*i;
370*36bd2089SBarry Smith       if (roworiented) {
371*36bd2089SBarry Smith         if (is == ADD_VALUES) {
372*36bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
373*36bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
374*36bd2089SBarry Smith               bap[jj] += *value++;
375*36bd2089SBarry Smith             }
376*36bd2089SBarry Smith           }
377*36bd2089SBarry Smith         } else {
378*36bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
379*36bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
380*36bd2089SBarry Smith               bap[jj] = *value++;
381*36bd2089SBarry Smith             }
382*36bd2089SBarry Smith           }
383*36bd2089SBarry Smith         }
384*36bd2089SBarry Smith       } else {
385*36bd2089SBarry Smith         if (is == ADD_VALUES) {
386*36bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
387*36bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
388*36bd2089SBarry Smith               bap[jj] += value[jj];
389*36bd2089SBarry Smith             }
390*36bd2089SBarry Smith             bap += bs;
391*36bd2089SBarry Smith           }
392*36bd2089SBarry Smith         } else {
393*36bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
394*36bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
395*36bd2089SBarry Smith               bap[jj]  = value[jj];
396*36bd2089SBarry Smith             }
397*36bd2089SBarry Smith             bap += bs;
398*36bd2089SBarry Smith           }
399*36bd2089SBarry Smith         }
400*36bd2089SBarry Smith       }
401*36bd2089SBarry Smith       goto noinsert2;
402*36bd2089SBarry Smith     }
403*36bd2089SBarry Smith   }
404*36bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
405*36bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
406*36bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
407*36bd2089SBarry Smith   N = nrow++ - 1; high++;
408*36bd2089SBarry Smith   /* shift up all the later entries in this row */
409*36bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
410*36bd2089SBarry Smith     rp[ii+1] = rp[ii];
411*36bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
412*36bd2089SBarry Smith   }
413*36bd2089SBarry Smith   if (N >= i) {
414*36bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
415*36bd2089SBarry Smith   }
416*36bd2089SBarry Smith   rp[i] = col;
417*36bd2089SBarry Smith   bap   = ap +  bs2*i;
418*36bd2089SBarry Smith   if (roworiented) {
419*36bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
420*36bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
421*36bd2089SBarry Smith         bap[jj] = *value++;
422*36bd2089SBarry Smith       }
423*36bd2089SBarry Smith     }
424*36bd2089SBarry Smith   } else {
425*36bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
426*36bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
427*36bd2089SBarry Smith         *bap++ = *value++;
428*36bd2089SBarry Smith       }
429*36bd2089SBarry Smith     }
430*36bd2089SBarry Smith   }
431*36bd2089SBarry Smith   noinsert2:;
432*36bd2089SBarry Smith   ailen[row] = nrow;
433*36bd2089SBarry Smith   PetscFunctionReturn(0);
434*36bd2089SBarry Smith }
435*36bd2089SBarry Smith 
436*36bd2089SBarry Smith #undef __FUNCT__
437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
438*36bd2089SBarry Smith /*
439*36bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
440*36bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
441*36bd2089SBarry Smith */
442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
443a30f8f8cSSatish Balay {
4440880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
445f15d580aSBarry Smith   const MatScalar *value;
446f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
447ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
448dfbe8321SBarry Smith   PetscErrorCode  ierr;
449899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
450899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
451d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
4520880e062SHong Zhang 
453a30f8f8cSSatish Balay   PetscFunctionBegin;
4540880e062SHong Zhang   if (!barray) {
455785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
4560880e062SHong Zhang     baij->barray = barray;
4570880e062SHong Zhang   }
4580880e062SHong Zhang 
4590880e062SHong Zhang   if (roworiented) {
4600880e062SHong Zhang     stepval = (n-1)*bs;
4610880e062SHong Zhang   } else {
4620880e062SHong Zhang     stepval = (m-1)*bs;
4630880e062SHong Zhang   }
4640880e062SHong Zhang   for (i=0; i<m; i++) {
4650880e062SHong Zhang     if (im[i] < 0) continue;
4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
467bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
4680880e062SHong Zhang #endif
4690880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4700880e062SHong Zhang       row = im[i] - rstart;
4710880e062SHong Zhang       for (j=0; j<n; j++) {
472f3f98c53SJed Brown         if (im[i] > in[j]) {
473f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
474e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
475f3f98c53SJed Brown         }
4760880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4770880e062SHong Zhang         if ((roworiented) && (n == 1)) {
478f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4790880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
480f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4810880e062SHong Zhang         } else { /* Here a copy is required */
4820880e062SHong Zhang           if (roworiented) {
4830880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4840880e062SHong Zhang           } else {
4850880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4860880e062SHong Zhang           }
4870880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4880880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4890880e062SHong Zhang               *barray++ = *value++;
4900880e062SHong Zhang             }
4910880e062SHong Zhang           }
4920880e062SHong Zhang           barray -=bs2;
4930880e062SHong Zhang         }
4940880e062SHong Zhang 
4950880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
4960880e062SHong Zhang           col  = in[j] - cstart;
497*36bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
49826fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
500bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5010880e062SHong Zhang #endif
5020880e062SHong Zhang         else {
5030880e062SHong Zhang           if (mat->was_assembled) {
5040880e062SHong Zhang             if (!baij->colmap) {
505ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5060880e062SHong Zhang             }
5070880e062SHong Zhang 
5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5101302d50aSBarry Smith             { PetscInt data;
5110880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
512e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5130880e062SHong Zhang             }
5140880e062SHong Zhang #else
515e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5160880e062SHong Zhang #endif
5170880e062SHong Zhang #endif
5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5190880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5200880e062SHong Zhang             col  = (col - 1)/bs;
5210880e062SHong Zhang #else
5220880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5230880e062SHong Zhang #endif
5240880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
525ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5260880e062SHong Zhang               col  = in[j];
5270880e062SHong Zhang             }
52826fbe8dcSKarl Rupp           } else col = in[j];
529*36bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
5300880e062SHong Zhang         }
5310880e062SHong Zhang       }
5320880e062SHong Zhang     } else {
533bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
5340880e062SHong Zhang       if (!baij->donotstash) {
5350880e062SHong Zhang         if (roworiented) {
5360880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5370880e062SHong Zhang         } else {
5380880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5390880e062SHong Zhang         }
5400880e062SHong Zhang       }
5410880e062SHong Zhang     }
5420880e062SHong Zhang   }
5430880e062SHong Zhang   PetscFunctionReturn(0);
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5516849ba73SBarry Smith   PetscErrorCode ierr;
552d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
553d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
557e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
558e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
562e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
563e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
565a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data--;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
585a30f8f8cSSatish Balay   }
586a30f8f8cSSatish Balay   PetscFunctionReturn(0);
587a30f8f8cSSatish Balay }
588a30f8f8cSSatish Balay 
5894a2ae208SSatish Balay #undef __FUNCT__
5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
592a30f8f8cSSatish Balay {
593a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
594dfbe8321SBarry Smith   PetscErrorCode ierr;
595a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
596a30f8f8cSSatish Balay 
597a30f8f8cSSatish Balay   PetscFunctionBegin;
598a30f8f8cSSatish Balay   if (baij->size == 1) {
599a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
600a30f8f8cSSatish Balay   } else {
601a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
602785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
603a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
604a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
605a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
606a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
607ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6088f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
609a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6100b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6110b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6120b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6130b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
614899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
615d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6160b8dc8d2SHong Zhang       MatScalar    *v;
6170b8dc8d2SHong Zhang 
618dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
619d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6200b8dc8d2SHong Zhang       /* Amat */
6210b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6220b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6230b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6240b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6250b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6260b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6270b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6280b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6290b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6300b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6310b8dc8d2SHong Zhang               /* non-diagonal block */
6320b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
6330b8dc8d2SHong Zhang             }
6340b8dc8d2SHong Zhang           }
6350b8dc8d2SHong Zhang         }
6360b8dc8d2SHong Zhang       }
6370b8dc8d2SHong Zhang       /* Bmat */
6380b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
6390b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6400b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6410b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
6420b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6430b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
6440b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6450b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6460b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6470b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6480b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
6490b8dc8d2SHong Zhang             }
6500b8dc8d2SHong Zhang           }
6510b8dc8d2SHong Zhang         }
6520b8dc8d2SHong Zhang       }
653ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6540b8dc8d2SHong Zhang       *norm = 0.0;
655d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
6560b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
6570b8dc8d2SHong Zhang       }
65874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
659f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
660a30f8f8cSSatish Balay   }
661a30f8f8cSSatish Balay   PetscFunctionReturn(0);
662a30f8f8cSSatish Balay }
663a30f8f8cSSatish Balay 
6644a2ae208SSatish Balay #undef __FUNCT__
6654a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
666dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
667a30f8f8cSSatish Balay {
668a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
669dfbe8321SBarry Smith   PetscErrorCode ierr;
6701302d50aSBarry Smith   PetscInt       nstash,reallocs;
671a30f8f8cSSatish Balay   InsertMode     addv;
672a30f8f8cSSatish Balay 
673a30f8f8cSSatish Balay   PetscFunctionBegin;
67426fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
677ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
678ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
679a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
680a30f8f8cSSatish Balay 
681d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
6821e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
683a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6841e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
685a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6861e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
687a30f8f8cSSatish Balay   PetscFunctionReturn(0);
688a30f8f8cSSatish Balay }
689a30f8f8cSSatish Balay 
6904a2ae208SSatish Balay #undef __FUNCT__
6914a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
692dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
693a30f8f8cSSatish Balay {
694a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
695a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
6966849ba73SBarry Smith   PetscErrorCode ierr;
69713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
698e44c0bd4SBarry Smith   PetscInt       *row,*col;
699ace3abfcSBarry Smith   PetscBool      other_disassembled;
70013f74950SBarry Smith   PetscMPIInt    n;
701ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
702a30f8f8cSSatish Balay   MatScalar      *val;
703a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
704a30f8f8cSSatish Balay 
70591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
706a30f8f8cSSatish Balay   PetscFunctionBegin;
7074cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
708a30f8f8cSSatish Balay     while (1) {
709a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
710a30f8f8cSSatish Balay       if (!flg) break;
711a30f8f8cSSatish Balay 
712a30f8f8cSSatish Balay       for (i=0; i<n;) {
713a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
71426fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
71526fbe8dcSKarl Rupp           if (row[j] != rstart) break;
71626fbe8dcSKarl Rupp         }
717a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
718a30f8f8cSSatish Balay         else       ncols = n-i;
719a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
720dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
721a30f8f8cSSatish Balay         i    = j;
722a30f8f8cSSatish Balay       }
723a30f8f8cSSatish Balay     }
724a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
725a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
726a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
727a30f8f8cSSatish Balay        restore the original flags */
728a30f8f8cSSatish Balay     r1 = baij->roworiented;
729a30f8f8cSSatish Balay     r2 = a->roworiented;
73091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
73126fbe8dcSKarl Rupp 
732a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
733a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
73426fbe8dcSKarl Rupp 
73591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
736a30f8f8cSSatish Balay     while (1) {
737a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
738a30f8f8cSSatish Balay       if (!flg) break;
739a30f8f8cSSatish Balay 
740a30f8f8cSSatish Balay       for (i=0; i<n;) {
741a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
74226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
74326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
74426fbe8dcSKarl Rupp         }
745a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
746a30f8f8cSSatish Balay         else       ncols = n-i;
747dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
748a30f8f8cSSatish Balay         i    = j;
749a30f8f8cSSatish Balay       }
750a30f8f8cSSatish Balay     }
751a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
75226fbe8dcSKarl Rupp 
753a30f8f8cSSatish Balay     baij->roworiented = r1;
754a30f8f8cSSatish Balay     a->roworiented    = r2;
75526fbe8dcSKarl Rupp 
75691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
757a30f8f8cSSatish Balay   }
758a30f8f8cSSatish Balay 
759a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
760a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
761a30f8f8cSSatish Balay 
762a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
763a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
764a30f8f8cSSatish Balay   /*
765a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
766a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
767a30f8f8cSSatish Balay   */
768a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
769ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
770a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
771ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
772a30f8f8cSSatish Balay     }
773a30f8f8cSSatish Balay   }
774a30f8f8cSSatish Balay 
775a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
77640781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
777a30f8f8cSSatish Balay   }
778a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
779a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
780a30f8f8cSSatish Balay 
78174ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
78226fbe8dcSKarl Rupp 
783a30f8f8cSSatish Balay   baij->rowvalues = 0;
7844f9cfa9eSBarry Smith 
7854f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
7864f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
787e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
78809e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
789e56f5c9eSBarry Smith   }
790a30f8f8cSSatish Balay   PetscFunctionReturn(0);
791a30f8f8cSSatish Balay }
792a30f8f8cSSatish Balay 
7937da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
794dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
7959804daf3SBarry Smith #include <petscdraw.h>
7964a2ae208SSatish Balay #undef __FUNCT__
7974a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7986849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
799a30f8f8cSSatish Balay {
800a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
801dfbe8321SBarry Smith   PetscErrorCode    ierr;
802d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8037da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
804ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
805b0a32e0cSBarry Smith   PetscViewer       sviewer;
806f3ef73ceSBarry Smith   PetscViewerFormat format;
807a30f8f8cSSatish Balay 
808a30f8f8cSSatish Balay   PetscFunctionBegin;
809251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
810251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
81132077d6dSBarry Smith   if (iascii) {
812b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
813456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
814a30f8f8cSSatish Balay       MatInfo info;
815ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
816a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8177b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
8187b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
819a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
820e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
821a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
822e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
823b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8247b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
82507d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
826a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
827a30f8f8cSSatish Balay       PetscFunctionReturn(0);
828fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
82977431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
830a30f8f8cSSatish Balay       PetscFunctionReturn(0);
831c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
832c1490034SHong Zhang       PetscFunctionReturn(0);
833a30f8f8cSSatish Balay     }
834a30f8f8cSSatish Balay   }
835a30f8f8cSSatish Balay 
836a30f8f8cSSatish Balay   if (isdraw) {
837b0a32e0cSBarry Smith     PetscDraw draw;
838ace3abfcSBarry Smith     PetscBool isnull;
839b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
840b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
841a30f8f8cSSatish Balay   }
842a30f8f8cSSatish Balay 
8437da1fb6eSBarry Smith   {
844a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
845a30f8f8cSSatish Balay     Mat          A;
84665d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84765d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
848d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
849a30f8f8cSSatish Balay     MatScalar    *a;
8503e219373SBarry Smith     const char   *matname;
851a30f8f8cSSatish Balay 
852f204ca49SKris Buschelman     /* Should this be the same type as mat? */
853ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
854a30f8f8cSSatish Balay     if (!rank) {
855f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
856a30f8f8cSSatish Balay     } else {
857f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
858a30f8f8cSSatish Balay     }
859f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
8600298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
8612b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
8623bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
863a30f8f8cSSatish Balay 
864a30f8f8cSSatish Balay     /* copy over the A part */
86565d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
866a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
867785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
868a30f8f8cSSatish Balay 
869a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
870e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
87126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
872a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
873e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
874a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
875dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
87626fbe8dcSKarl Rupp           col++;
87726fbe8dcSKarl Rupp           a += bs;
878a30f8f8cSSatish Balay         }
879a30f8f8cSSatish Balay       }
880a30f8f8cSSatish Balay     }
881a30f8f8cSSatish Balay     /* copy over the B part */
88265d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
88365d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
884a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
885e9f7bc9eSHong Zhang 
886e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
88726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
888a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
889a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
890a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
891799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
89226fbe8dcSKarl Rupp           col++;
89326fbe8dcSKarl Rupp           a += bs;
894a30f8f8cSSatish Balay         }
895a30f8f8cSSatish Balay       }
896a30f8f8cSSatish Balay     }
897a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
898a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
899a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
900a30f8f8cSSatish Balay     /*
901a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
902b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
903a30f8f8cSSatish Balay     */
904b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
905ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9063e219373SBarry Smith     if (!rank) {
907ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
9087da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
909a30f8f8cSSatish Balay     }
910b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
9116bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
912a30f8f8cSSatish Balay   }
913a30f8f8cSSatish Balay   PetscFunctionReturn(0);
914a30f8f8cSSatish Balay }
915a30f8f8cSSatish Balay 
9164a2ae208SSatish Balay #undef __FUNCT__
9174a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
918dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
919a30f8f8cSSatish Balay {
920dfbe8321SBarry Smith   PetscErrorCode ierr;
921ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
922a30f8f8cSSatish Balay 
923a30f8f8cSSatish Balay   PetscFunctionBegin;
924251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
925251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
926251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
927251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
92832077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
929a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
930a30f8f8cSSatish Balay   }
931a30f8f8cSSatish Balay   PetscFunctionReturn(0);
932a30f8f8cSSatish Balay }
933a30f8f8cSSatish Balay 
9344a2ae208SSatish Balay #undef __FUNCT__
9354a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
936dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
937a30f8f8cSSatish Balay {
938a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
939dfbe8321SBarry Smith   PetscErrorCode ierr;
940a30f8f8cSSatish Balay 
941a30f8f8cSSatish Balay   PetscFunctionBegin;
942a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
943d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
944a30f8f8cSSatish Balay #endif
945a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
946a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
9476bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
9486bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
949a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
9506bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
951a30f8f8cSSatish Balay #else
95205b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
953a30f8f8cSSatish Balay #endif
95405b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
9556bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
9566bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
9576bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
9586bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
9596bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
9606bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
9616bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
9626bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
9635755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
96405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
96505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
9666bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
9676bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
9686bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
969ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
97005b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
971a30f8f8cSSatish Balay #endif
97259ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
97359ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
974899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
975bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
976901853e0SKris Buschelman 
977dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
978bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
979bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
980bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
981bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
982bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
9836214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
9846214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
9856214f412SHong Zhang #endif
986a30f8f8cSSatish Balay   PetscFunctionReturn(0);
987a30f8f8cSSatish Balay }
988a30f8f8cSSatish Balay 
9894a2ae208SSatish Balay #undef __FUNCT__
990547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
991547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
992547795f9SHong Zhang {
993547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
994547795f9SHong Zhang   PetscErrorCode ierr;
995547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
996547795f9SHong Zhang   PetscScalar    *x,*from;
997547795f9SHong Zhang 
998547795f9SHong Zhang   PetscFunctionBegin;
999547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1000e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1001547795f9SHong Zhang 
1002547795f9SHong Zhang   /* diagonal part */
1003547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1004547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1005547795f9SHong Zhang 
1006547795f9SHong Zhang   /* subdiagonal part */
1007547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1008547795f9SHong Zhang 
1009547795f9SHong Zhang   /* copy x into the vec slvec0 */
1010547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1011547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1012547795f9SHong Zhang 
1013547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1014547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1015547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1016547795f9SHong Zhang 
1017547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1018547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1019547795f9SHong Zhang   /* supperdiagonal part */
1020547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1021547795f9SHong Zhang   PetscFunctionReturn(0);
1022547795f9SHong Zhang }
1023547795f9SHong Zhang 
1024547795f9SHong Zhang #undef __FUNCT__
1025a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
1026dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1027a9d4b620SHong Zhang {
1028a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1029dfbe8321SBarry Smith   PetscErrorCode    ierr;
1030d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1031d9ca1df4SBarry Smith   PetscScalar       *from;
1032d9ca1df4SBarry Smith   const PetscScalar *x;
1033a9d4b620SHong Zhang 
1034a9d4b620SHong Zhang   PetscFunctionBegin;
1035a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1036e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1037a9d4b620SHong Zhang 
1038a9d4b620SHong Zhang   /* diagonal part */
1039a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1040fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1041a9d4b620SHong Zhang 
1042a9d4b620SHong Zhang   /* subdiagonal part */
1043a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1044fc165ae2SBarry Smith 
1045a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10461ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1047d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1048a9d4b620SHong Zhang 
1049fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1050fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1051d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1052fc165ae2SBarry Smith 
1053fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1054ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1055a9d4b620SHong Zhang   /* supperdiagonal part */
1056a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1057a9d4b620SHong Zhang   PetscFunctionReturn(0);
1058a9d4b620SHong Zhang }
1059a9d4b620SHong Zhang 
1060a9d4b620SHong Zhang #undef __FUNCT__
106140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
1062dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1063a30f8f8cSSatish Balay {
1064a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1065dfbe8321SBarry Smith   PetscErrorCode ierr;
10661302d50aSBarry Smith   PetscInt       nt;
1067a30f8f8cSSatish Balay 
1068a30f8f8cSSatish Balay   PetscFunctionBegin;
1069a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1070e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1071e7e72b3dSBarry Smith 
1072a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1073e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
107465d70643SHong Zhang 
1075ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1076b941877fSHong Zhang   /* do diagonal part */
1077b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1078b941877fSHong Zhang   /* do supperdiagonal part */
1079ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1080b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1081b941877fSHong Zhang   /* do subdiagonal part */
1082b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1083ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1084ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1085a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1086a30f8f8cSSatish Balay }
1087a30f8f8cSSatish Balay 
10884a2ae208SSatish Balay #undef __FUNCT__
10894a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1090dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1091a30f8f8cSSatish Balay {
1092de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1093dfbe8321SBarry Smith   PetscErrorCode    ierr;
1094d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1095d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1096d9ca1df4SBarry Smith   const PetscScalar *x;
1097a9d4b620SHong Zhang 
1098a9d4b620SHong Zhang   PetscFunctionBegin;
1099a9d4b620SHong Zhang   /*
1100ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
11010ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1102a9d4b620SHong Zhang   */
1103a9d4b620SHong Zhang   /* diagonal part */
1104a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
11052dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1106a9d4b620SHong Zhang 
1107a9d4b620SHong Zhang   /* subdiagonal part */
1108a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1109a9d4b620SHong Zhang 
1110a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11111ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1112d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1113a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
11141ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1115a9d4b620SHong Zhang 
1116ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1117d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1118ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1119a9d4b620SHong Zhang 
1120a9d4b620SHong Zhang   /* supperdiagonal part */
1121a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1122a9d4b620SHong Zhang   PetscFunctionReturn(0);
1123a9d4b620SHong Zhang }
1124a9d4b620SHong Zhang 
1125a9d4b620SHong Zhang #undef __FUNCT__
1126a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1127dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1128a9d4b620SHong Zhang {
1129a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1130dfbe8321SBarry Smith   PetscErrorCode ierr;
1131a30f8f8cSSatish Balay 
1132a30f8f8cSSatish Balay   PetscFunctionBegin;
1133ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1134b941877fSHong Zhang   /* do diagonal part */
1135b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1136b941877fSHong Zhang   /* do supperdiagonal part */
1137ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1138de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1139de8b6608SHong Zhang 
1140b941877fSHong Zhang   /* do subdiagonal part */
1141a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1142ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1143ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1144a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1145a30f8f8cSSatish Balay }
1146a30f8f8cSSatish Balay 
1147a30f8f8cSSatish Balay /*
1148a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1149a30f8f8cSSatish Balay    diagonal block
1150a30f8f8cSSatish Balay */
11514a2ae208SSatish Balay #undef __FUNCT__
11524a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1153dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1154a30f8f8cSSatish Balay {
1155a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1156dfbe8321SBarry Smith   PetscErrorCode ierr;
1157a30f8f8cSSatish Balay 
1158a30f8f8cSSatish Balay   PetscFunctionBegin;
1159e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1160a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1161a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1162a30f8f8cSSatish Balay }
1163a30f8f8cSSatish Balay 
11644a2ae208SSatish Balay #undef __FUNCT__
11654a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1166f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1167a30f8f8cSSatish Balay {
1168a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1169dfbe8321SBarry Smith   PetscErrorCode ierr;
1170a30f8f8cSSatish Balay 
1171a30f8f8cSSatish Balay   PetscFunctionBegin;
1172f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1173f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1174a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1175a30f8f8cSSatish Balay }
1176a30f8f8cSSatish Balay 
11774a2ae208SSatish Balay #undef __FUNCT__
11784a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11791302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1180a30f8f8cSSatish Balay {
1181d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1182d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1183d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1184d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1185d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1186899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1187d0d4cfc2SHong Zhang 
1188a30f8f8cSSatish Balay   PetscFunctionBegin;
1189e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1190d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1191d0d4cfc2SHong Zhang 
1192d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1193d0d4cfc2SHong Zhang     /*
1194d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1195d0d4cfc2SHong Zhang     */
1196d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1197d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1198d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1199d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1200d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
120126fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1202d0d4cfc2SHong Zhang     }
1203dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1204d0d4cfc2SHong Zhang   }
1205d0d4cfc2SHong Zhang 
1206e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1207d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1208d0d4cfc2SHong Zhang 
1209d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1210d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1211d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1212d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1213d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1214d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1215d0d4cfc2SHong Zhang 
1216d0d4cfc2SHong Zhang   cmap = mat->garray;
1217d0d4cfc2SHong Zhang   if (v  || idx) {
1218d0d4cfc2SHong Zhang     if (nztot) {
1219d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1220d0d4cfc2SHong Zhang       PetscInt imark = -1;
1221d0d4cfc2SHong Zhang       if (v) {
1222d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1223d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1224d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1225d0d4cfc2SHong Zhang           else break;
1226d0d4cfc2SHong Zhang         }
1227d0d4cfc2SHong Zhang         imark = i;
1228d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1229d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1230d0d4cfc2SHong Zhang       }
1231d0d4cfc2SHong Zhang       if (idx) {
1232d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1233d0d4cfc2SHong Zhang         if (imark > -1) {
1234d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1235d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1236d0d4cfc2SHong Zhang           }
1237d0d4cfc2SHong Zhang         } else {
1238d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
123926fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1240d0d4cfc2SHong Zhang             else break;
1241d0d4cfc2SHong Zhang           }
1242d0d4cfc2SHong Zhang           imark = i;
1243d0d4cfc2SHong Zhang         }
1244d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1245d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1246d0d4cfc2SHong Zhang       }
1247d0d4cfc2SHong Zhang     } else {
1248d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1249d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1250d0d4cfc2SHong Zhang     }
1251d0d4cfc2SHong Zhang   }
1252d0d4cfc2SHong Zhang   *nz  = nztot;
1253d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1254d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1255a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1256a30f8f8cSSatish Balay }
1257a30f8f8cSSatish Balay 
12584a2ae208SSatish Balay #undef __FUNCT__
12594a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
12601302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1261a30f8f8cSSatish Balay {
1262a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1263a30f8f8cSSatish Balay 
1264a30f8f8cSSatish Balay   PetscFunctionBegin;
1265e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1266a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1267a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1268a30f8f8cSSatish Balay }
1269a30f8f8cSSatish Balay 
12704a2ae208SSatish Balay #undef __FUNCT__
1271d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1272d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1273d0d4cfc2SHong Zhang {
1274d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1275d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1276d0d4cfc2SHong Zhang 
1277d0d4cfc2SHong Zhang   PetscFunctionBegin;
1278d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1279d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1280d0d4cfc2SHong Zhang }
1281d0d4cfc2SHong Zhang #undef __FUNCT__
1282d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1283d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1284d0d4cfc2SHong Zhang {
1285d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1286d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1287d0d4cfc2SHong Zhang 
1288d0d4cfc2SHong Zhang   PetscFunctionBegin;
1289d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1290d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1291d0d4cfc2SHong Zhang }
1292d0d4cfc2SHong Zhang 
1293d0d4cfc2SHong Zhang #undef __FUNCT__
129499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
129599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
129699cafbc1SBarry Smith {
129799cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
129899cafbc1SBarry Smith   PetscErrorCode ierr;
129999cafbc1SBarry Smith 
130099cafbc1SBarry Smith   PetscFunctionBegin;
130199cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
130299cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
130399cafbc1SBarry Smith   PetscFunctionReturn(0);
130499cafbc1SBarry Smith }
130599cafbc1SBarry Smith 
130699cafbc1SBarry Smith #undef __FUNCT__
130799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
130899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
130999cafbc1SBarry Smith {
131099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
131199cafbc1SBarry Smith   PetscErrorCode ierr;
131299cafbc1SBarry Smith 
131399cafbc1SBarry Smith   PetscFunctionBegin;
131499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
131599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
131699cafbc1SBarry Smith   PetscFunctionReturn(0);
131799cafbc1SBarry Smith }
131899cafbc1SBarry Smith 
131936032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ()
132036032a97SHong Zhang    Input: isrow       - distributed(parallel),
132136032a97SHong Zhang           iscol_local - locally owned (seq)
132236032a97SHong Zhang */
132399cafbc1SBarry Smith #undef __FUNCT__
132436032a97SHong Zhang #define __FUNCT__ "ISEqual_private"
132536032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13268f46ffcaSHong Zhang {
13278f46ffcaSHong Zhang   PetscErrorCode ierr;
13288f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13298f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
133036032a97SHong Zhang 
133136032a97SHong Zhang   PetscFunctionBegin;
13328f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
13338f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
13341098a8e8SHong Zhang   if (sz1 > sz2) {
13351098a8e8SHong Zhang     *flg = PETSC_FALSE;
13361098a8e8SHong Zhang     PetscFunctionReturn(0);
13371098a8e8SHong Zhang   }
13388f46ffcaSHong Zhang 
13398f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
13408f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13418f46ffcaSHong Zhang 
13428f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
13438f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
13448f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
13458f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
13468f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
13478f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
13488f46ffcaSHong Zhang 
13498f46ffcaSHong Zhang   nmatch=0;
13508f46ffcaSHong Zhang   k     = 0;
13518f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
13528f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
13538f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13548f46ffcaSHong Zhang         k = j; nmatch++;
13558f46ffcaSHong Zhang         break;
13568f46ffcaSHong Zhang       }
13578f46ffcaSHong Zhang     }
13588f46ffcaSHong Zhang   }
13598f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
13608f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13618f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
13628f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
13631098a8e8SHong Zhang   if (nmatch < sz1) {
13641098a8e8SHong Zhang     *flg = PETSC_FALSE;
13651098a8e8SHong Zhang   } else {
13661098a8e8SHong Zhang     *flg = PETSC_TRUE;
13671098a8e8SHong Zhang   }
136836032a97SHong Zhang   PetscFunctionReturn(0);
13698f46ffcaSHong Zhang }
137036032a97SHong Zhang 
137136032a97SHong Zhang #undef __FUNCT__
137236032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
137336032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
137436032a97SHong Zhang {
137536032a97SHong Zhang   PetscErrorCode ierr;
137636032a97SHong Zhang   IS             iscol_local;
137736032a97SHong Zhang   PetscInt       csize;
137836032a97SHong Zhang   PetscBool      isequal;
137936032a97SHong Zhang 
138036032a97SHong Zhang   PetscFunctionBegin;
138136032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
138236032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
138336032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
138436032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
138536032a97SHong Zhang   } else {
138636032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
138736032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
138836032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
13898f46ffcaSHong Zhang   }
13908f46ffcaSHong Zhang 
13918f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
139236032a97SHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
13938f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
13948f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
13958f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
13968f46ffcaSHong Zhang   }
13978f46ffcaSHong Zhang   PetscFunctionReturn(0);
13988f46ffcaSHong Zhang }
13998f46ffcaSHong Zhang 
14008f46ffcaSHong Zhang #undef __FUNCT__
14014a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1402dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1403a30f8f8cSSatish Balay {
1404a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1405dfbe8321SBarry Smith   PetscErrorCode ierr;
1406a30f8f8cSSatish Balay 
1407a30f8f8cSSatish Balay   PetscFunctionBegin;
1408a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1409a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1410a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1411a30f8f8cSSatish Balay }
1412a30f8f8cSSatish Balay 
14134a2ae208SSatish Balay #undef __FUNCT__
14144a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1415dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1416a30f8f8cSSatish Balay {
1417a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1418a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1419dfbe8321SBarry Smith   PetscErrorCode ierr;
1420a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1421a30f8f8cSSatish Balay 
1422a30f8f8cSSatish Balay   PetscFunctionBegin;
1423d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
142426fbe8dcSKarl Rupp 
1425a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
142626fbe8dcSKarl Rupp 
1427a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1428a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
142926fbe8dcSKarl Rupp 
1430a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
143126fbe8dcSKarl Rupp 
1432a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1433a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1434a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1435a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1436a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1437a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1438a30f8f8cSSatish Balay     info->memory       = isend[3];
1439a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1440a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1441ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
144226fbe8dcSKarl Rupp 
1443a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1444a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1445a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1446a30f8f8cSSatish Balay     info->memory       = irecv[3];
1447a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1448a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1449ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
145026fbe8dcSKarl Rupp 
1451a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1452a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1453a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1454a30f8f8cSSatish Balay     info->memory       = irecv[3];
1455a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1456f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1457a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1458a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1459a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1460a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1461a30f8f8cSSatish Balay }
1462a30f8f8cSSatish Balay 
14634a2ae208SSatish Balay #undef __FUNCT__
14644a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1465ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1466a30f8f8cSSatish Balay {
1467a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1468d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1469dfbe8321SBarry Smith   PetscErrorCode ierr;
1470a30f8f8cSSatish Balay 
1471a30f8f8cSSatish Balay   PetscFunctionBegin;
1472e98b92d7SKris Buschelman   switch (op) {
1473512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1474e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147528b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1476a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1477e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14784e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14794e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1480e98b92d7SKris Buschelman     break;
1481e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
14824e0d8c25SBarry Smith     a->roworiented = flg;
148326fbe8dcSKarl Rupp 
14844e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14854e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1486e98b92d7SKris Buschelman     break;
14874e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1488290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1489e98b92d7SKris Buschelman     break;
1490e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14914e0d8c25SBarry Smith     a->donotstash = flg;
1492e98b92d7SKris Buschelman     break;
1493e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
14944e0d8c25SBarry Smith     a->ht_flag = flg;
1495e98b92d7SKris Buschelman     break;
14969a4540c5SBarry Smith   case MAT_HERMITIAN:
1497e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1498eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
149926fbe8dcSKarl Rupp 
1500547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1501eeffb40dSHong Zhang     break;
1502ffa07934SHong Zhang   case MAT_SPD:
1503ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1504ffa07934SHong Zhang     A->spd     = flg;
1505ffa07934SHong Zhang     if (flg) {
1506ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1507ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1508ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1509ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1510ffa07934SHong Zhang     }
1511ffa07934SHong Zhang     break;
151277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1513eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1514eeffb40dSHong Zhang     break;
151577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1516eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1517eeffb40dSHong Zhang     break;
15189a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1519e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1520290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
152177e54ba9SKris Buschelman     break;
1522d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15234e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1524d0d4cfc2SHong Zhang     break;
1525d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15264e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1527d0d4cfc2SHong Zhang     break;
1528d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15294e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1530d0d4cfc2SHong Zhang     break;
1531e98b92d7SKris Buschelman   default:
1532e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1533a30f8f8cSSatish Balay   }
1534a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1535a30f8f8cSSatish Balay }
1536a30f8f8cSSatish Balay 
15374a2ae208SSatish Balay #undef __FUNCT__
15388115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1539fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1540a30f8f8cSSatish Balay {
1541dfbe8321SBarry Smith   PetscErrorCode ierr;
15426e111a19SKarl Rupp 
1543a30f8f8cSSatish Balay   PetscFunctionBegin;
1544815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1545999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1546fc4dec0aSBarry Smith   }
15478115998fSBarry Smith   PetscFunctionReturn(0);
1548a30f8f8cSSatish Balay }
1549a30f8f8cSSatish Balay 
15504a2ae208SSatish Balay #undef __FUNCT__
15514a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1552dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1553a30f8f8cSSatish Balay {
1554a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1555a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1556dfbe8321SBarry Smith   PetscErrorCode ierr;
15575e90f9d9SHong Zhang   PetscInt       nv,m,n;
1558ace3abfcSBarry Smith   PetscBool      flg;
1559a30f8f8cSSatish Balay 
1560a30f8f8cSSatish Balay   PetscFunctionBegin;
1561a30f8f8cSSatish Balay   if (ll != rr) {
1562b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1563e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1564a30f8f8cSSatish Balay   }
1565b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1566b3bf805bSHong Zhang 
15675e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1568e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1569b3bf805bSHong Zhang 
15705e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1571e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
15725e90f9d9SHong Zhang 
1573ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15745e90f9d9SHong Zhang 
15755e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
15760298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
15775e90f9d9SHong Zhang 
15785e90f9d9SHong Zhang   /* scale the diagonal part */
1579a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1580a30f8f8cSSatish Balay 
15815e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1582ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15830298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1584a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1585a30f8f8cSSatish Balay }
1586a30f8f8cSSatish Balay 
15874a2ae208SSatish Balay #undef __FUNCT__
15884a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1589dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1590a30f8f8cSSatish Balay {
1591f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1592dfbe8321SBarry Smith   PetscErrorCode ierr;
1593a30f8f8cSSatish Balay 
1594a30f8f8cSSatish Balay   PetscFunctionBegin;
1595a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1596a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1597a30f8f8cSSatish Balay }
1598a30f8f8cSSatish Balay 
15996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1600a30f8f8cSSatish Balay 
16014a2ae208SSatish Balay #undef __FUNCT__
16024a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1603ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1604a30f8f8cSSatish Balay {
1605a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1606a30f8f8cSSatish Balay   Mat            a,b,c,d;
1607ace3abfcSBarry Smith   PetscBool      flg;
1608dfbe8321SBarry Smith   PetscErrorCode ierr;
1609a30f8f8cSSatish Balay 
1610a30f8f8cSSatish Balay   PetscFunctionBegin;
1611a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1612a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1613a30f8f8cSSatish Balay 
1614a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1615abc0a331SBarry Smith   if (flg) {
1616a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1617a30f8f8cSSatish Balay   }
1618ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1619a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1620a30f8f8cSSatish Balay }
1621a30f8f8cSSatish Balay 
16224a2ae208SSatish Balay #undef __FUNCT__
16233c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
16243c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16253c896bc6SHong Zhang {
16263c896bc6SHong Zhang   PetscErrorCode ierr;
16273c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
16283c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
16293c896bc6SHong Zhang 
16303c896bc6SHong Zhang   PetscFunctionBegin;
16313c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16323c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1633d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
16343c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1635d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
16363c896bc6SHong Zhang   } else {
16373c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
16383c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
16393c896bc6SHong Zhang   }
16403c896bc6SHong Zhang   PetscFunctionReturn(0);
16413c896bc6SHong Zhang }
16423c896bc6SHong Zhang 
16433c896bc6SHong Zhang #undef __FUNCT__
16444994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
16454994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1646273d9f13SBarry Smith {
1647dfbe8321SBarry Smith   PetscErrorCode ierr;
1648273d9f13SBarry Smith 
1649273d9f13SBarry Smith   PetscFunctionBegin;
1650535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1651273d9f13SBarry Smith   PetscFunctionReturn(0);
1652273d9f13SBarry Smith }
1653a5e6ed63SBarry Smith 
16544fe895cdSHong Zhang #undef __FUNCT__
16554fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
16564fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16574fe895cdSHong Zhang {
16584fe895cdSHong Zhang   PetscErrorCode ierr;
16594fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16604fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16614fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
16624fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
16634fe895cdSHong Zhang 
16644fe895cdSHong Zhang   PetscFunctionBegin;
16654fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16664fe895cdSHong Zhang     PetscScalar alpha = a;
16674fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
16684fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1669c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
16708b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
16714fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
16724fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1673c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
16748b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1675a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1676ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1677ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1678ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1679ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
16804fe895cdSHong Zhang   } else {
16814de5dceeSHong Zhang     Mat      B;
16824de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
16834de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1684d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
16854de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
16864de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
16874de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
16884de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
16894de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
16904de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
16914de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
16924de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
16934de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
16944de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
16954de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
16964de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
16974de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
16984de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
16994de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1700d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
17014de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
17024fe895cdSHong Zhang   }
17034fe895cdSHong Zhang   PetscFunctionReturn(0);
17044fe895cdSHong Zhang }
17054fe895cdSHong Zhang 
1706a5e6ed63SBarry Smith #undef __FUNCT__
1707a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
17081302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1709a5e6ed63SBarry Smith {
17106849ba73SBarry Smith   PetscErrorCode ierr;
17111302d50aSBarry Smith   PetscInt       i;
1712ace3abfcSBarry Smith   PetscBool      flg;
1713a5e6ed63SBarry Smith 
17146849ba73SBarry Smith   PetscFunctionBegin;
17154dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1716a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1717a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
17184dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
17194dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1720a5e6ed63SBarry Smith     }
17214dcd73b1SHong Zhang   }
1722a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1723a5e6ed63SBarry Smith }
1724a5e6ed63SBarry Smith 
1725a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17263964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1727a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1728a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1729a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
173097304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1731431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1732431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1733a30f8f8cSSatish Balay                                        0,
1734a30f8f8cSSatish Balay                                        0,
1735a30f8f8cSSatish Balay                                        0,
173697304618SKris Buschelman                                /* 10*/ 0,
1737a30f8f8cSSatish Balay                                        0,
1738a30f8f8cSSatish Balay                                        0,
173941f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1740a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
174197304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1742a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1743a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1744a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1745a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
174697304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1747a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1748a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1749a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1750d519adbfSMatthew Knepley                                /* 24*/ 0,
1751a30f8f8cSSatish Balay                                        0,
1752a30f8f8cSSatish Balay                                        0,
1753a30f8f8cSSatish Balay                                        0,
1754a30f8f8cSSatish Balay                                        0,
17554994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1756b5df2d14SHong Zhang                                        0,
1757a30f8f8cSSatish Balay                                        0,
1758a30f8f8cSSatish Balay                                        0,
1759a30f8f8cSSatish Balay                                        0,
1760d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1761a30f8f8cSSatish Balay                                        0,
1762a30f8f8cSSatish Balay                                        0,
1763a30f8f8cSSatish Balay                                        0,
1764a30f8f8cSSatish Balay                                        0,
1765d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1766a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1767d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1768a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
17693c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1770d519adbfSMatthew Knepley                                /* 44*/ 0,
1771a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1772a30f8f8cSSatish Balay                                        0,
1773a30f8f8cSSatish Balay                                        0,
1774a30f8f8cSSatish Balay                                        0,
1775f73d5cc4SBarry Smith                                /* 49*/ 0,
1776a30f8f8cSSatish Balay                                        0,
1777a30f8f8cSSatish Balay                                        0,
1778a30f8f8cSSatish Balay                                        0,
1779a30f8f8cSSatish Balay                                        0,
1780d519adbfSMatthew Knepley                                /* 54*/ 0,
1781a30f8f8cSSatish Balay                                        0,
1782a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1783a30f8f8cSSatish Balay                                        0,
1784a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
17858f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
1786a30f8f8cSSatish Balay                                        0,
1787a30f8f8cSSatish Balay                                        0,
1788357abbc8SBarry Smith                                        0,
178924d5174aSHong Zhang                                        0,
1790d519adbfSMatthew Knepley                                /* 64*/ 0,
179124d5174aSHong Zhang                                        0,
179224d5174aSHong Zhang                                        0,
179324d5174aSHong Zhang                                        0,
179424d5174aSHong Zhang                                        0,
1795d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
179624d5174aSHong Zhang                                        0,
179797304618SKris Buschelman                                        0,
179897304618SKris Buschelman                                        0,
179997304618SKris Buschelman                                        0,
1800d519adbfSMatthew Knepley                                /* 74*/ 0,
180197304618SKris Buschelman                                        0,
180297304618SKris Buschelman                                        0,
180397304618SKris Buschelman                                        0,
180497304618SKris Buschelman                                        0,
1805d519adbfSMatthew Knepley                                /* 79*/ 0,
180697304618SKris Buschelman                                        0,
180797304618SKris Buschelman                                        0,
180897304618SKris Buschelman                                        0,
18095bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1810d519adbfSMatthew Knepley                                /* 84*/ 0,
1811865e5f61SKris Buschelman                                        0,
1812865e5f61SKris Buschelman                                        0,
1813865e5f61SKris Buschelman                                        0,
1814865e5f61SKris Buschelman                                        0,
1815d519adbfSMatthew Knepley                                /* 89*/ 0,
1816865e5f61SKris Buschelman                                        0,
1817865e5f61SKris Buschelman                                        0,
1818865e5f61SKris Buschelman                                        0,
1819865e5f61SKris Buschelman                                        0,
1820d519adbfSMatthew Knepley                                /* 94*/ 0,
1821865e5f61SKris Buschelman                                        0,
1822865e5f61SKris Buschelman                                        0,
182399cafbc1SBarry Smith                                        0,
182499cafbc1SBarry Smith                                        0,
1825d519adbfSMatthew Knepley                                /* 99*/ 0,
182699cafbc1SBarry Smith                                        0,
182799cafbc1SBarry Smith                                        0,
182899cafbc1SBarry Smith                                        0,
182999cafbc1SBarry Smith                                        0,
1830d519adbfSMatthew Knepley                                /*104*/ 0,
183199cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1832d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1833d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
183495936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
183595936485SShri Abhyankar                                /*109*/ 0,
183695936485SShri Abhyankar                                        0,
183795936485SShri Abhyankar                                        0,
183895936485SShri Abhyankar                                        0,
183995936485SShri Abhyankar                                        0,
184095936485SShri Abhyankar                                /*114*/ 0,
184195936485SShri Abhyankar                                        0,
184295936485SShri Abhyankar                                        0,
184395936485SShri Abhyankar                                        0,
184495936485SShri Abhyankar                                        0,
184595936485SShri Abhyankar                                /*119*/ 0,
184695936485SShri Abhyankar                                        0,
184795936485SShri Abhyankar                                        0,
18483964eb88SJed Brown                                        0,
18493964eb88SJed Brown                                        0,
18503964eb88SJed Brown                                /*124*/ 0,
18513964eb88SJed Brown                                        0,
18523964eb88SJed Brown                                        0,
18533964eb88SJed Brown                                        0,
18543964eb88SJed Brown                                        0,
18553964eb88SJed Brown                                /*129*/ 0,
18563964eb88SJed Brown                                        0,
18573964eb88SJed Brown                                        0,
18583964eb88SJed Brown                                        0,
18593964eb88SJed Brown                                        0,
18603964eb88SJed Brown                                /*134*/ 0,
18613964eb88SJed Brown                                        0,
18623964eb88SJed Brown                                        0,
18633964eb88SJed Brown                                        0,
18643964eb88SJed Brown                                        0,
18653964eb88SJed Brown                                /*139*/ 0,
1866f9426fe0SMark Adams                                        0,
186759f5e6ceSHong Zhang                                        0,
186859f5e6ceSHong Zhang                                        0,
186959f5e6ceSHong Zhang                                        0,
187059f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
187199cafbc1SBarry Smith };
1872a30f8f8cSSatish Balay 
18734a2ae208SSatish Balay #undef __FUNCT__
18744a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
187511bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1876a30f8f8cSSatish Balay {
1877a30f8f8cSSatish Balay   PetscFunctionBegin;
1878a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1879a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1880a30f8f8cSSatish Balay }
1881a30f8f8cSSatish Balay 
18824a2ae208SSatish Balay #undef __FUNCT__
1883a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1884b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1885a23d5eceSKris Buschelman {
1886a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1887dfbe8321SBarry Smith   PetscErrorCode ierr;
1888535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1889a23d5eceSKris Buschelman 
1890a23d5eceSKris Buschelman   PetscFunctionBegin;
189133d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
189226283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
189326283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1894e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1895899cda47SBarry Smith 
1896a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1897d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1898d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1899c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1900a23d5eceSKris Buschelman 
1901d0f46423SBarry Smith   B->rmap->bs = bs;
1902a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1903a23d5eceSKris Buschelman   b->mbs      = mbs;
1904a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1905de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1906de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1907a23d5eceSKris Buschelman 
1908a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1909d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1910a23d5eceSKris Buschelman   }
1911d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1912d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1913a23d5eceSKris Buschelman 
1914d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1915d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1916a23d5eceSKris Buschelman 
1917526dfc15SBarry Smith   if (!B->preallocated) {
1918f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1919d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
19209c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
19213bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1922f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1923d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
19244aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
19253bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1926ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1927526dfc15SBarry Smith   }
1928a23d5eceSKris Buschelman 
1929526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1930526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
193126fbe8dcSKarl Rupp 
1932526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1933a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1934a23d5eceSKris Buschelman }
1935a23d5eceSKris Buschelman 
1936dfb205c3SBarry Smith #undef __FUNCT__
1937dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1938dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1939dfb205c3SBarry Smith {
1940dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1941dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1942dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1943dfb205c3SBarry Smith   PetscScalar    *values=0;
1944dfb205c3SBarry Smith   PetscErrorCode ierr;
1945dfb205c3SBarry Smith 
1946dfb205c3SBarry Smith   PetscFunctionBegin;
1947ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1948dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1949dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1950dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1951dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1952e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1953dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1954dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1955dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1956dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1957dfb205c3SBarry Smith 
1958dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1959dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1960dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1961dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1962dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1963dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1964dfb205c3SBarry Smith     JJ     = jj + ii[i];
1965dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1966dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1967dfb205c3SBarry Smith       JJ++;
1968dfb205c3SBarry Smith     }
1969dfb205c3SBarry Smith     d = 0;
1970dfb205c3SBarry Smith     for (; j<nz; j++) {
1971dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1972dfb205c3SBarry Smith       d++;
1973dfb205c3SBarry Smith     }
1974dfb205c3SBarry Smith     d_nnz[i] = d;
1975dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1976dfb205c3SBarry Smith   }
1977dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1978dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1979dfb205c3SBarry Smith 
1980dfb205c3SBarry Smith   values = (PetscScalar*)V;
1981dfb205c3SBarry Smith   if (!values) {
1982785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
1983dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1984dfb205c3SBarry Smith   }
1985dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1986dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1987dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1988dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1989dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1990dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1991dfb205c3SBarry Smith   }
1992dfb205c3SBarry Smith 
1993dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1994dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1995dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
19967827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1997dfb205c3SBarry Smith   PetscFunctionReturn(0);
1998dfb205c3SBarry Smith }
1999dfb205c3SBarry Smith 
20000bad9183SKris Buschelman /*MC
2001fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2002828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2003828413b8SBarry Smith    the matrix is stored.
2004828413b8SBarry Smith 
2005828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2006828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
20070bad9183SKris Buschelman 
20080bad9183SKris Buschelman    Options Database Keys:
20090bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
20100bad9183SKris Buschelman 
20110bad9183SKris Buschelman   Level: beginner
20120bad9183SKris Buschelman 
20130bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
20140bad9183SKris Buschelman M*/
20150bad9183SKris Buschelman 
20168cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
2017aa5a9175SDahai Guo 
2018a23d5eceSKris Buschelman #undef __FUNCT__
20194a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
20208cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2021b5df2d14SHong Zhang {
2022b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2023dfbe8321SBarry Smith   PetscErrorCode ierr;
202494ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2025b5df2d14SHong Zhang 
2026b5df2d14SHong Zhang   PetscFunctionBegin;
2027b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2028b0a32e0cSBarry Smith   B->data = (void*)b;
2029b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2030b5df2d14SHong Zhang 
2031b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2032b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2033b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2034b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
203526fbe8dcSKarl Rupp 
2036ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2037ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2038b5df2d14SHong Zhang 
2039b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2040854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2041b5df2d14SHong Zhang 
2042b5df2d14SHong Zhang   /* build cache for off array entries formed */
2043ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
204426fbe8dcSKarl Rupp 
2045b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
20460298fd71SBarry Smith   b->colmap      = NULL;
20470298fd71SBarry Smith   b->garray      = NULL;
2048b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2049b5df2d14SHong Zhang 
2050b5df2d14SHong Zhang   /* stuff used in block assembly */
2051b5df2d14SHong Zhang   b->barray = 0;
2052b5df2d14SHong Zhang 
2053b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2054b5df2d14SHong Zhang   b->lvec    = 0;
2055b5df2d14SHong Zhang   b->Mvctx   = 0;
205640781036SHong Zhang   b->slvec0  = 0;
205740781036SHong Zhang   b->slvec0b = 0;
205840781036SHong Zhang   b->slvec1  = 0;
205940781036SHong Zhang   b->slvec1a = 0;
206040781036SHong Zhang   b->slvec1b = 0;
206140781036SHong Zhang   b->sMvctx  = 0;
2062b5df2d14SHong Zhang 
2063b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2064b5df2d14SHong Zhang   b->rowindices   = 0;
2065b5df2d14SHong Zhang   b->rowvalues    = 0;
2066b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2067b5df2d14SHong Zhang 
2068b5df2d14SHong Zhang   /* hash table stuff */
2069b5df2d14SHong Zhang   b->ht           = 0;
2070b5df2d14SHong Zhang   b->hd           = 0;
2071b5df2d14SHong Zhang   b->ht_size      = 0;
2072b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2073b5df2d14SHong Zhang   b->ht_fact      = 0;
2074b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2075b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2076b5df2d14SHong Zhang 
20777a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
20787a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
20797a868f3eSHong Zhang 
208059ffdab8SBarry Smith   b->in_loc = 0;
208159ffdab8SBarry Smith   b->v_loc  = 0;
208259ffdab8SBarry Smith   b->n_loc  = 0;
208394ae4db5SBarry Smith 
2084bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2085bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2086bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
2087bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2088bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
2089bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
20906214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
20916214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
20926214f412SHong Zhang #endif
2093aa5a9175SDahai Guo 
209423ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
209523ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
209623ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
209723ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
209826fbe8dcSKarl Rupp 
209917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
210094ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
210194ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
210294ae4db5SBarry Smith   if (flg) {
210394ae4db5SBarry Smith     PetscReal fact = 1.39;
210494ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
210594ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
210694ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
210794ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
210894ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
210994ae4db5SBarry Smith   }
211094ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2111b5df2d14SHong Zhang   PetscFunctionReturn(0);
2112b5df2d14SHong Zhang }
2113b5df2d14SHong Zhang 
2114209238afSKris Buschelman /*MC
2115002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2116209238afSKris Buschelman 
2117209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2118209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2119209238afSKris Buschelman 
2120209238afSKris Buschelman    Options Database Keys:
2121209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2122209238afSKris Buschelman 
2123209238afSKris Buschelman   Level: beginner
2124209238afSKris Buschelman 
2125209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2126209238afSKris Buschelman M*/
2127209238afSKris Buschelman 
21284a2ae208SSatish Balay #undef __FUNCT__
21294a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
2130b5df2d14SHong Zhang /*@C
2131b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2132b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2133b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2134b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2135b5df2d14SHong Zhang 
2136b5df2d14SHong Zhang    Collective on Mat
2137b5df2d14SHong Zhang 
2138b5df2d14SHong Zhang    Input Parameters:
21391c4f3114SJed Brown +  B - the matrix
2140bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2141bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2142b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2143b5df2d14SHong Zhang            submatrix  (same for all local rows)
2144b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
21456d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
21460298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
214795742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2148b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2149b5df2d14SHong Zhang            submatrix (same for all local rows).
2150b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2151c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
21520298fd71SBarry Smith            (possibly different for each block row) or NULL.
2153b5df2d14SHong Zhang 
2154b5df2d14SHong Zhang 
2155b5df2d14SHong Zhang    Options Database Keys:
2156b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
2157b5df2d14SHong Zhang                      block calculations (much slower)
2158b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
2159b5df2d14SHong Zhang 
2160b5df2d14SHong Zhang    Notes:
2161b5df2d14SHong Zhang 
2162b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2163b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2164b5df2d14SHong Zhang 
216549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
216649a6f317SBarry Smith 
2167b5df2d14SHong Zhang    Storage Information:
2168b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2169b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2170b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2171b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2172b5df2d14SHong Zhang 
2173b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2174b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
21750298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2176b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2177b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2178b5df2d14SHong Zhang 
2179aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2180aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2181aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2182aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2183aa95bbe8SBarry Smith 
2184b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2185b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2186b5df2d14SHong Zhang 
2187b5df2d14SHong Zhang .vb
2188b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2189a4b1a0f6SJed Brown           --------------------------
2190c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2191c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2192c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2193a4b1a0f6SJed Brown           --------------------------
2194b5df2d14SHong Zhang .ve
2195b5df2d14SHong Zhang 
2196b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2197b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
21986d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
21996d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2200b5df2d14SHong Zhang 
22016d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22026d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2203c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2204c2fc9fa9SBarry Smith 
2205b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2206b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2207b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2208b5df2d14SHong Zhang    matrices.
2209b5df2d14SHong Zhang 
2210b5df2d14SHong Zhang    Level: intermediate
2211b5df2d14SHong Zhang 
2212b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2213b5df2d14SHong Zhang 
2214ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2215b5df2d14SHong Zhang @*/
22167087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2217b5df2d14SHong Zhang {
22184ac538c5SBarry Smith   PetscErrorCode ierr;
2219b5df2d14SHong Zhang 
2220b5df2d14SHong Zhang   PetscFunctionBegin;
22216ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22226ba663aaSJed Brown   PetscValidType(B,1);
22236ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
22244ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2225b5df2d14SHong Zhang   PetscFunctionReturn(0);
2226b5df2d14SHong Zhang }
2227b5df2d14SHong Zhang 
22284a2ae208SSatish Balay #undef __FUNCT__
222969b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2230a30f8f8cSSatish Balay /*@C
223169b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2232a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2233a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2234a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2235a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2236a30f8f8cSSatish Balay 
2237a30f8f8cSSatish Balay    Collective on MPI_Comm
2238a30f8f8cSSatish Balay 
2239a30f8f8cSSatish Balay    Input Parameters:
2240a30f8f8cSSatish Balay +  comm - MPI communicator
2241bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2242bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2243a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2244a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2245a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2246a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2247a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2248a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2249a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2250a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2251a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2252a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2253a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
22546d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
22550298fd71SBarry Smith            (possibly different for each block block row) or NULL.
225695742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
225795742e49SBarry Smith            set its value even if it is zero.
2258a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2259a30f8f8cSSatish Balay            submatrix (same for all local rows).
2260a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2261a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
22620298fd71SBarry Smith            each block row) or NULL.
2263a30f8f8cSSatish Balay 
2264a30f8f8cSSatish Balay    Output Parameter:
2265a30f8f8cSSatish Balay .  A - the matrix
2266a30f8f8cSSatish Balay 
2267a30f8f8cSSatish Balay    Options Database Keys:
2268a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2269a30f8f8cSSatish Balay                      block calculations (much slower)
2270a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2271a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2272a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2273a30f8f8cSSatish Balay 
2274175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2275ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2276175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2277175b88e8SBarry Smith 
2278a30f8f8cSSatish Balay    Notes:
2279d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
22806d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2281d1be2dadSMatthew Knepley 
2282a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2283a30f8f8cSSatish Balay    (possibly both).
2284a30f8f8cSSatish Balay 
2285a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2286a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2287a30f8f8cSSatish Balay 
228849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
228949a6f317SBarry Smith 
2290a30f8f8cSSatish Balay    Storage Information:
2291a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2292a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2293a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2294a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2295a30f8f8cSSatish Balay 
2296a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2297a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
22980298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2299a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2300a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2301a30f8f8cSSatish Balay 
2302a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2303a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2304a30f8f8cSSatish Balay 
2305a30f8f8cSSatish Balay .vb
2306a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2307a4b1a0f6SJed Brown           --------------------------
2308c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2309c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2310c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2311a4b1a0f6SJed Brown           --------------------------
2312a30f8f8cSSatish Balay .ve
2313a30f8f8cSSatish Balay 
2314a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2315a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
23166d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23176d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2318a30f8f8cSSatish Balay 
23196d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23206d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2321a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2322a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2323a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2324a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2325a30f8f8cSSatish Balay    matrices.
2326a30f8f8cSSatish Balay 
2327a30f8f8cSSatish Balay    Level: intermediate
2328a30f8f8cSSatish Balay 
2329a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2330a30f8f8cSSatish Balay 
233169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2332a30f8f8cSSatish Balay @*/
2333a30f8f8cSSatish Balay 
233469b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2335a30f8f8cSSatish Balay {
23366849ba73SBarry Smith   PetscErrorCode ierr;
23371302d50aSBarry Smith   PetscMPIInt    size;
2338a30f8f8cSSatish Balay 
2339a30f8f8cSSatish Balay   PetscFunctionBegin;
2340f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2341f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2342273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2343273d9f13SBarry Smith   if (size > 1) {
2344b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2345b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2346273d9f13SBarry Smith   } else {
2347273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2348273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2349273d9f13SBarry Smith   }
2350a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2351a30f8f8cSSatish Balay }
2352a30f8f8cSSatish Balay 
2353a30f8f8cSSatish Balay 
23544a2ae208SSatish Balay #undef __FUNCT__
23554a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
23566849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2357a30f8f8cSSatish Balay {
2358a30f8f8cSSatish Balay   Mat            mat;
2359a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2360dfbe8321SBarry Smith   PetscErrorCode ierr;
2361d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2362387bc808SHong Zhang   PetscScalar    *array;
2363a30f8f8cSSatish Balay 
2364a30f8f8cSSatish Balay   PetscFunctionBegin;
2365a30f8f8cSSatish Balay   *newmat = 0;
236626fbe8dcSKarl Rupp 
2367ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2368d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
23697adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
23701d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
23711e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
23721e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2373e1b6402fSHong Zhang 
2374d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2375273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
237682327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
23777fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
23787fff6886SHong Zhang 
2379b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2380a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2381a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2382a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2383a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2384a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2385a30f8f8cSSatish Balay 
2386899cda47SBarry Smith 
2387a30f8f8cSSatish Balay   a->size         = oldmat->size;
2388a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2389a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2390a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2391a30f8f8cSSatish Balay   a->rowindices   = 0;
2392a30f8f8cSSatish Balay   a->rowvalues    = 0;
2393a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2394a30f8f8cSSatish Balay   a->barray       = 0;
2395899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2396899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2397899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2398899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2399a30f8f8cSSatish Balay 
2400a30f8f8cSSatish Balay   /* hash table stuff */
2401a30f8f8cSSatish Balay   a->ht           = 0;
2402a30f8f8cSSatish Balay   a->hd           = 0;
2403a30f8f8cSSatish Balay   a->ht_size      = 0;
2404a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2405a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2406a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2407a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2408a30f8f8cSSatish Balay 
2409899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2410a30f8f8cSSatish Balay   if (oldmat->colmap) {
2411a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2412a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2413a30f8f8cSSatish Balay #else
2414854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
24153bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
24161302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2417a30f8f8cSSatish Balay #endif
2418a30f8f8cSSatish Balay   } else a->colmap = 0;
2419387bc808SHong Zhang 
2420a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2421785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
24223bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
24231302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2424a30f8f8cSSatish Balay   } else a->garray = 0;
2425a30f8f8cSSatish Balay 
2426ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2427a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
24283bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2429a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
24303bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
243182327fa8SHong Zhang 
243282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
24333bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
243482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
24353bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2436387bc808SHong Zhang 
2437387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
24381ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2439778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2440778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
24411ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
24421ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2443778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
24441ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
24453bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
24463bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
24473bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
24483bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
24493bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2450387bc808SHong Zhang 
2451387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2452387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2453387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
24543bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
245582327fa8SHong Zhang 
2456a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
24573bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2458a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
24593bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2460140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2461a30f8f8cSSatish Balay   *newmat = mat;
2462a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2463a30f8f8cSSatish Balay }
2464a30f8f8cSSatish Balay 
24654a2ae208SSatish Balay #undef __FUNCT__
24665bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2467112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
246895936485SShri Abhyankar {
246995936485SShri Abhyankar   PetscErrorCode ierr;
247095936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
247195936485SShri Abhyankar   PetscScalar    *vals,*buf;
2472ce94432eSBarry Smith   MPI_Comm       comm;
247395936485SShri Abhyankar   MPI_Status     status;
2474adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2475adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
247695936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
24773059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
247895936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
247995936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
248095936485SShri Abhyankar   int            fd;
248195936485SShri Abhyankar 
248295936485SShri Abhyankar   PetscFunctionBegin;
2483c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2484c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2485ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
24860298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
24870298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
248895936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
24893059b6faSBarry Smith   if (bs < 0) bs = 1;
249095936485SShri Abhyankar 
249195936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
249295936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
249395936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
24945872f025SBarry Smith   if (!rank) {
249595936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
249695936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
249795936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
249895936485SShri Abhyankar   }
249995936485SShri Abhyankar 
250095936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
250195936485SShri Abhyankar 
250295936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
250326fbe8dcSKarl Rupp   M    = header[1];
250426fbe8dcSKarl Rupp   N    = header[2];
250595936485SShri Abhyankar 
250695936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
250795936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
250895936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
250995936485SShri Abhyankar 
251095936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
251195936485SShri Abhyankar   if (sizesset) {
251295936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
251395936485SShri Abhyankar   }
2514abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2515abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
251695936485SShri Abhyankar 
251795936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
251895936485SShri Abhyankar 
251995936485SShri Abhyankar   /*
252095936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
252195936485SShri Abhyankar      divisible by the blocksize
252295936485SShri Abhyankar   */
252395936485SShri Abhyankar   Mbs        = M/bs;
252495936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
252595936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
252695936485SShri Abhyankar   else                  Mbs++;
252795936485SShri Abhyankar   if (extra_rows &&!rank) {
252895936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
252995936485SShri Abhyankar   }
253095936485SShri Abhyankar 
253195936485SShri Abhyankar   /* determine ownership of all rows */
253295936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
253395936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
253495936485SShri Abhyankar     m   = mbs*bs;
253595936485SShri Abhyankar   } else { /* User Set */
253695936485SShri Abhyankar     m   = newmat->rmap->n;
253795936485SShri Abhyankar     mbs = m/bs;
253895936485SShri Abhyankar   }
2539dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
25404dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
254195936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
254295936485SShri Abhyankar   rowners[0] = 0;
254395936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
254495936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
254595936485SShri Abhyankar   rstart = rowners[rank];
254695936485SShri Abhyankar   rend   = rowners[rank+1];
254795936485SShri Abhyankar 
254895936485SShri Abhyankar   /* distribute row lengths to all processors */
2549785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
255095936485SShri Abhyankar   if (!rank) {
2551854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
255295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
255395936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2554785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
255595936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
255695936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
255795936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
255895936485SShri Abhyankar   } else {
255995936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
256095936485SShri Abhyankar   }
256195936485SShri Abhyankar 
256295936485SShri Abhyankar   if (!rank) {   /* procs[0] */
256395936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2564785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
256595936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
256695936485SShri Abhyankar     for (i=0; i<size; i++) {
256795936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
256895936485SShri Abhyankar         procsnz[i] += rowlengths[j];
256995936485SShri Abhyankar       }
257095936485SShri Abhyankar     }
257195936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
257295936485SShri Abhyankar 
257395936485SShri Abhyankar     /* determine max buffer needed and allocate it */
257495936485SShri Abhyankar     maxnz = 0;
257595936485SShri Abhyankar     for (i=0; i<size; i++) {
257695936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
257795936485SShri Abhyankar     }
2578785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
257995936485SShri Abhyankar 
258095936485SShri Abhyankar     /* read in my part of the matrix column indices  */
258195936485SShri Abhyankar     nz     = procsnz[0];
2582785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
258395936485SShri Abhyankar     mycols = ibuf;
258495936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
258595936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
258626fbe8dcSKarl Rupp     if (size == 1) {
258726fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
258826fbe8dcSKarl Rupp     }
258995936485SShri Abhyankar 
259095936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
259195936485SShri Abhyankar     for (i=1; i<size-1; i++) {
259295936485SShri Abhyankar       nz   = procsnz[i];
259395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
259495936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
259595936485SShri Abhyankar     }
259695936485SShri Abhyankar     /* read in the stuff for the last proc */
259795936485SShri Abhyankar     if (size != 1) {
259895936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
259995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
260095936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
260195936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
260295936485SShri Abhyankar     }
260395936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
260495936485SShri Abhyankar   } else {  /* procs[i], i>0 */
260595936485SShri Abhyankar     /* determine buffer space needed for message */
260695936485SShri Abhyankar     nz = 0;
260726fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2608785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
260995936485SShri Abhyankar     mycols = ibuf;
261095936485SShri Abhyankar     /* receive message of column indices*/
261195936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
261295936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
261395936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
261495936485SShri Abhyankar   }
261595936485SShri Abhyankar 
261695936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2617dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2618dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
261995936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
262095936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
262195936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
262295936485SShri Abhyankar   rowcount = 0;
262395936485SShri Abhyankar   nzcount  = 0;
262495936485SShri Abhyankar   for (i=0; i<mbs; i++) {
262595936485SShri Abhyankar     dcount  = 0;
262695936485SShri Abhyankar     odcount = 0;
262795936485SShri Abhyankar     for (j=0; j<bs; j++) {
262895936485SShri Abhyankar       kmax = locrowlens[rowcount];
262995936485SShri Abhyankar       for (k=0; k<kmax; k++) {
263095936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
263195936485SShri Abhyankar         if (!mask[tmp]) {
263295936485SShri Abhyankar           mask[tmp] = 1;
263395936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
263495936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
263595936485SShri Abhyankar         }
263695936485SShri Abhyankar       }
263795936485SShri Abhyankar       rowcount++;
263895936485SShri Abhyankar     }
263995936485SShri Abhyankar 
264095936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
264195936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
264295936485SShri Abhyankar 
264395936485SShri Abhyankar     /* zero out the mask elements we set */
264495936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
264595936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
264695936485SShri Abhyankar   }
264795936485SShri Abhyankar   if (!sizesset) {
264895936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
264995936485SShri Abhyankar   }
265095936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
26516816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
265295936485SShri Abhyankar 
265395936485SShri Abhyankar   if (!rank) {
2654785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
265595936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
265695936485SShri Abhyankar     nz     = procsnz[0];
265795936485SShri Abhyankar     vals   = buf;
265895936485SShri Abhyankar     mycols = ibuf;
265995936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
266095936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
266126fbe8dcSKarl Rupp     if (size == 1) {
266226fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
266326fbe8dcSKarl Rupp     }
266495936485SShri Abhyankar 
266595936485SShri Abhyankar     /* insert into matrix */
266695936485SShri Abhyankar     jj = rstart*bs;
266795936485SShri Abhyankar     for (i=0; i<m; i++) {
266895936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
266995936485SShri Abhyankar       mycols += locrowlens[i];
267095936485SShri Abhyankar       vals   += locrowlens[i];
267195936485SShri Abhyankar       jj++;
267295936485SShri Abhyankar     }
267395936485SShri Abhyankar 
267495936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
267595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
267695936485SShri Abhyankar       nz   = procsnz[i];
267795936485SShri Abhyankar       vals = buf;
267895936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
267995936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
268095936485SShri Abhyankar     }
268195936485SShri Abhyankar     /* the last proc */
268295936485SShri Abhyankar     if (size != 1) {
268395936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
268495936485SShri Abhyankar       vals = buf;
268595936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
268695936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
268795936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
268895936485SShri Abhyankar     }
268995936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
269095936485SShri Abhyankar 
269195936485SShri Abhyankar   } else {
269295936485SShri Abhyankar     /* receive numeric values */
2693785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
269495936485SShri Abhyankar 
269595936485SShri Abhyankar     /* receive message of values*/
269695936485SShri Abhyankar     vals   = buf;
269795936485SShri Abhyankar     mycols = ibuf;
269895936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
269995936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
270095936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
270195936485SShri Abhyankar 
270295936485SShri Abhyankar     /* insert into matrix */
270395936485SShri Abhyankar     jj = rstart*bs;
270495936485SShri Abhyankar     for (i=0; i<m; i++) {
270595936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
270695936485SShri Abhyankar       mycols += locrowlens[i];
270795936485SShri Abhyankar       vals   += locrowlens[i];
270895936485SShri Abhyankar       jj++;
270995936485SShri Abhyankar     }
271095936485SShri Abhyankar   }
271195936485SShri Abhyankar 
271295936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
271395936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
271495936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
271595936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
271695936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
271795936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
271895936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
271995936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
272095936485SShri Abhyankar   PetscFunctionReturn(0);
272195936485SShri Abhyankar }
272295936485SShri Abhyankar 
272395936485SShri Abhyankar #undef __FUNCT__
27244a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2725dcf5cc72SBarry Smith /*XXXXX@
2726a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2727a30f8f8cSSatish Balay 
2728a30f8f8cSSatish Balay    Input Parameters:
2729a30f8f8cSSatish Balay .  mat  - the matrix
2730a30f8f8cSSatish Balay .  fact - factor
2731a30f8f8cSSatish Balay 
2732c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2733a30f8f8cSSatish Balay 
2734a30f8f8cSSatish Balay    Level: advanced
2735a30f8f8cSSatish Balay 
2736a30f8f8cSSatish Balay   Notes:
2737a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2738a30f8f8cSSatish Balay 
2739a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2740a30f8f8cSSatish Balay 
2741a30f8f8cSSatish Balay .seealso: MatSetOption()
2742dcf5cc72SBarry Smith @XXXXX*/
2743dcf5cc72SBarry Smith 
274424d5174aSHong Zhang 
27454a2ae208SSatish Balay #undef __FUNCT__
2746985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2747985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
274824d5174aSHong Zhang {
274924d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2750f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2751ca54ac64SHong Zhang   PetscReal      atmp;
275287828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2753dfbe8321SBarry Smith   PetscErrorCode ierr;
27541302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
27551302d50aSBarry Smith   PetscMPIInt    rank,size;
27561302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
275787828ca2SBarry Smith   PetscScalar    *va;
27588a1c53f2SBarry Smith   MatScalar      *ba;
2759f4c0e9e4SHong Zhang   MPI_Status     stat;
276024d5174aSHong Zhang 
276124d5174aSHong Zhang   PetscFunctionBegin;
2762e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
27630298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
27641ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2765f4c0e9e4SHong Zhang 
2766ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2767ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2768f4c0e9e4SHong Zhang 
2769d0f46423SBarry Smith   bs  = A->rmap->bs;
2770f4c0e9e4SHong Zhang   mbs = a->mbs;
2771f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2772f4c0e9e4SHong Zhang   ba  = b->a;
2773f4c0e9e4SHong Zhang   bi  = b->i;
2774f4c0e9e4SHong Zhang   bj  = b->j;
2775f4c0e9e4SHong Zhang 
2776f4c0e9e4SHong Zhang   /* find ownerships */
2777d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2778f4c0e9e4SHong Zhang 
2779f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2780785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2781ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2782f4c0e9e4SHong Zhang 
2783f4c0e9e4SHong Zhang   /* row_max for B */
2784b8475685SHong Zhang   if (rank != size-1) {
2785f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2786f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2787f4c0e9e4SHong Zhang       brow  = bs*i;
2788f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2789f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2790f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2791ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
279204d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2793f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2794f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2795ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2796ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2797f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2798f4c0e9e4SHong Zhang           }
2799f4c0e9e4SHong Zhang         }
2800f4c0e9e4SHong Zhang         bj++;
2801f4c0e9e4SHong Zhang       }
2802f4c0e9e4SHong Zhang     }
2803f4c0e9e4SHong Zhang 
2804f4c0e9e4SHong Zhang     /* send values to its owners */
2805f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2806f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2807ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2808ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2809ca54ac64SHong Zhang     }
2810f4c0e9e4SHong Zhang   }
2811f4c0e9e4SHong Zhang 
2812f4c0e9e4SHong Zhang   /* receive values */
2813ca54ac64SHong Zhang   if (rank) {
2814f4c0e9e4SHong Zhang     rvalues = work;
2815ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2816f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2817ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2818f4c0e9e4SHong Zhang       /* process values */
2819f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2820ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2821f4c0e9e4SHong Zhang       }
2822f4c0e9e4SHong Zhang     }
2823ca54ac64SHong Zhang   }
2824f4c0e9e4SHong Zhang 
28251ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2826ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
282724d5174aSHong Zhang   PetscFunctionReturn(0);
282824d5174aSHong Zhang }
28292798e883SHong Zhang 
28302798e883SHong Zhang #undef __FUNCT__
283141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
283241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
28332798e883SHong Zhang {
28342798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2835dfbe8321SBarry Smith   PetscErrorCode    ierr;
2836d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
28373649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2838ffe4fb16SHong Zhang   Vec               bb1;
28393649974fSBarry Smith   const PetscScalar *b;
2840ffe4fb16SHong Zhang 
2841ffe4fb16SHong Zhang   PetscFunctionBegin;
2842e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2843e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2844ffe4fb16SHong Zhang 
2845a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
284641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2847a2b30743SBarry Smith     PetscFunctionReturn(0);
2848a2b30743SBarry Smith   }
2849a2b30743SBarry Smith 
2850ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2851ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
285241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2853ffe4fb16SHong Zhang       its--;
2854ffe4fb16SHong Zhang     }
2855ffe4fb16SHong Zhang 
2856ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2857ffe4fb16SHong Zhang     while (its--) {
2858ffe4fb16SHong Zhang 
2859ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2860ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2861ffe4fb16SHong Zhang 
2862ffe4fb16SHong Zhang       /* copy xx into slvec0a */
28631ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
28641ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2865ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
28661ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2867ffe4fb16SHong Zhang 
2868efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2869ffe4fb16SHong Zhang 
2870ffe4fb16SHong Zhang       /* copy bb into slvec1a */
28711ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
28723649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2873ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
28741ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2875ffe4fb16SHong Zhang 
2876ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2877fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2878ffe4fb16SHong Zhang 
2879ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
28801ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2881a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2882ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2883ffe4fb16SHong Zhang 
2884ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2885ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2886ffe4fb16SHong Zhang 
2887ffe4fb16SHong Zhang       /* local diagonal sweep */
288841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2889ffe4fb16SHong Zhang     }
28906bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2891fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
289241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2893fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
289441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2895fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2896fa22f6d0SBarry Smith     Vec               xx1;
2897ace3abfcSBarry Smith     PetscBool         hasop;
289820f1ed55SBarry Smith     const PetscScalar *diag;
2899887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
290020f1ed55SBarry Smith     PetscInt          i,n;
2901fa22f6d0SBarry Smith 
2902fa22f6d0SBarry Smith     if (!mat->xx1) {
2903fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2904fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2905fa22f6d0SBarry Smith     }
2906fa22f6d0SBarry Smith     xx1 = mat->xx1;
2907fa22f6d0SBarry Smith     bb1 = mat->bb1;
2908fa22f6d0SBarry Smith 
290941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2910fa22f6d0SBarry Smith 
2911fa22f6d0SBarry Smith     if (!mat->diag) {
2912effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
29132a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2914fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2915fa22f6d0SBarry Smith     }
2916fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2917fa22f6d0SBarry Smith 
2918fa22f6d0SBarry Smith     if (hasop) {
2919fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2920887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
292120f1ed55SBarry Smith     } else {
292220f1ed55SBarry Smith       /*
292320f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
292420f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2925887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
292620f1ed55SBarry Smith       */
292720f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29283649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29293649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
293020f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
293120f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2932887ee2caSBarry Smith       if (omega == 1.0) {
293326fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
293420f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2935887ee2caSBarry Smith       } else {
293626fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2937887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2938887ee2caSBarry Smith       }
293920f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29403649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29413649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
294220f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
294320f1ed55SBarry Smith     }
2944fa22f6d0SBarry Smith 
2945fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2946fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2947fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2948fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2949fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2950fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2951fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2952fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2953fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2954fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2955effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2956fa22f6d0SBarry Smith 
2957fa22f6d0SBarry Smith     /* local sweep */
295841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2959fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2960f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2961ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2962ffe4fb16SHong Zhang }
2963ffe4fb16SHong Zhang 
2964ffe4fb16SHong Zhang #undef __FUNCT__
296541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
296641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2967ffe4fb16SHong Zhang {
2968ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2969dfbe8321SBarry Smith   PetscErrorCode ierr;
29702798e883SHong Zhang   Vec            lvec1,bb1;
29712798e883SHong Zhang 
29722798e883SHong Zhang   PetscFunctionBegin;
2973e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2974e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
29752798e883SHong Zhang 
2976c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
29772798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
297841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
29792798e883SHong Zhang       its--;
29802798e883SHong Zhang     }
29812798e883SHong Zhang 
29822798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
29832798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
29842798e883SHong Zhang     while (its--) {
2985ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
29862798e883SHong Zhang 
29872798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
29882798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2989efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
29902798e883SHong Zhang 
2991ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
29922798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2993ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
29942798e883SHong Zhang 
29952798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2996efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
29972798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
29982798e883SHong Zhang 
2999ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30002798e883SHong Zhang 
3001c14dc6b6SHong Zhang       /* diagonal sweep */
300241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
30032798e883SHong Zhang     }
30046bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
30056bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
30066bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
30072798e883SHong Zhang   PetscFunctionReturn(0);
30082798e883SHong Zhang }
30092798e883SHong Zhang 
3010dfb205c3SBarry Smith #undef __FUNCT__
3011dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
3012dfb205c3SBarry Smith /*@
3013dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3014dfb205c3SBarry Smith          CSR format the local rows.
3015dfb205c3SBarry Smith 
3016dfb205c3SBarry Smith    Collective on MPI_Comm
3017dfb205c3SBarry Smith 
3018dfb205c3SBarry Smith    Input Parameters:
3019dfb205c3SBarry Smith +  comm - MPI communicator
3020dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3021dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3022dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3023dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3024dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3025dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3026dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3027dfb205c3SBarry Smith .   i - row indices
3028dfb205c3SBarry Smith .   j - column indices
3029dfb205c3SBarry Smith -   a - matrix values
3030dfb205c3SBarry Smith 
3031dfb205c3SBarry Smith    Output Parameter:
3032dfb205c3SBarry Smith .   mat - the matrix
3033dfb205c3SBarry Smith 
3034dfb205c3SBarry Smith    Level: intermediate
3035dfb205c3SBarry Smith 
3036dfb205c3SBarry Smith    Notes:
3037dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3038dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3039dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3040dfb205c3SBarry Smith 
3041dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3042dfb205c3SBarry Smith 
3043dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3044dfb205c3SBarry Smith 
3045dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
304669b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3047dfb205c3SBarry Smith @*/
30487087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3049dfb205c3SBarry Smith {
3050dfb205c3SBarry Smith   PetscErrorCode ierr;
3051dfb205c3SBarry Smith 
3052dfb205c3SBarry Smith 
3053dfb205c3SBarry Smith   PetscFunctionBegin;
3054f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3055dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3056dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3057dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3058dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3059dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3060dfb205c3SBarry Smith   PetscFunctionReturn(0);
3061dfb205c3SBarry Smith }
3062dfb205c3SBarry Smith 
3063dfb205c3SBarry Smith 
3064dfb205c3SBarry Smith #undef __FUNCT__
3065dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
3066dfb205c3SBarry Smith /*@C
3067dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
3068dfb205c3SBarry Smith    (the default parallel PETSc format).
3069dfb205c3SBarry Smith 
3070dfb205c3SBarry Smith    Collective on MPI_Comm
3071dfb205c3SBarry Smith 
3072dfb205c3SBarry Smith    Input Parameters:
30731c4f3114SJed Brown +  B - the matrix
3074dfb205c3SBarry Smith .  bs - the block size
3075dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3076dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3077dfb205c3SBarry Smith -  v - optional values in the matrix
3078dfb205c3SBarry Smith 
3079dfb205c3SBarry Smith    Level: developer
3080dfb205c3SBarry Smith 
3081dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3082dfb205c3SBarry Smith 
308369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3084dfb205c3SBarry Smith @*/
30857087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3086dfb205c3SBarry Smith {
30874ac538c5SBarry Smith   PetscErrorCode ierr;
3088dfb205c3SBarry Smith 
3089dfb205c3SBarry Smith   PetscFunctionBegin;
30904ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3091dfb205c3SBarry Smith   PetscFunctionReturn(0);
3092dfb205c3SBarry Smith }
3093dfb205c3SBarry Smith 
3094de4b53ebSHong Zhang #undef __FUNCT__
309510c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
309610c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
30974dcd73b1SHong Zhang {
30984dcd73b1SHong Zhang   PetscErrorCode ierr;
309910c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
310010c56fdeSHong Zhang   PetscInt       *indx;
310110c56fdeSHong Zhang   PetscScalar    *values;
3102dfb205c3SBarry Smith 
31034dcd73b1SHong Zhang   PetscFunctionBegin;
31044dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
310510c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
310610c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
310710c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
310810c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
31094dcd73b1SHong Zhang 
311010c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
311110c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
311210c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
311310c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
311410c56fdeSHong Zhang     }
311510c56fdeSHong Zhang     /* Check sum(n) = Nbs */
311610c56fdeSHong Zhang     ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
311710c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
311810c56fdeSHong Zhang 
311910c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
312010c56fdeSHong Zhang     rstart -= mbs;
31214dcd73b1SHong Zhang 
31224dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
312310c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3124e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
312510c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
31264dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
31274dcd73b1SHong Zhang       nnz = nnz/bs;
31284dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
31294dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
31304dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
31314dcd73b1SHong Zhang     }
3132e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
31334dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
31344dcd73b1SHong Zhang 
31354dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
313610c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
31374dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
31384dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
31394dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
31404dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
31414dcd73b1SHong Zhang   }
31424dcd73b1SHong Zhang 
314310c56fdeSHong Zhang   /* numeric phase */
31444dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
314510c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
31464dcd73b1SHong Zhang 
3147e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
31484dcd73b1SHong Zhang   for (i=0; i<m; i++) {
31494dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31504dcd73b1SHong Zhang     Ii   = i + rstart;
315110c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
31524dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31534dcd73b1SHong Zhang   }
3154e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
315510c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
315610c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
31574dcd73b1SHong Zhang   PetscFunctionReturn(0);
31584dcd73b1SHong Zhang }
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