1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 103a30f8f8cSSatish Balay N = nrow++ - 1; \ 104a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 105a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 106a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 107a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 110a30f8f8cSSatish Balay rp[_i] = bcol; \ 111a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 112a30f8f8cSSatish Balay a_noinsert:; \ 113a30f8f8cSSatish Balay ailen[brow] = nrow; \ 114a30f8f8cSSatish Balay } 115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 116a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 117a30f8f8cSSatish Balay { \ 118a30f8f8cSSatish Balay brow = row/bs; \ 119a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 120a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 121a30f8f8cSSatish Balay bcol = col/bs; \ 122a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 123a30f8f8cSSatish Balay low = 0; high = nrow; \ 124a30f8f8cSSatish Balay while (high-low > 3) { \ 125a30f8f8cSSatish Balay t = (low+high)/2; \ 126a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 127a30f8f8cSSatish Balay else low = t; \ 128a30f8f8cSSatish Balay } \ 129a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 130a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 131a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 132a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 133a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 134a30f8f8cSSatish Balay else *bap = value; \ 135a30f8f8cSSatish Balay goto b_noinsert; \ 136a30f8f8cSSatish Balay } \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 139085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 140421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay b_noinsert:; \ 151a30f8f8cSSatish Balay bilen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #endif 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1564a2ae208SSatish Balay #undef __FUNCT__ 1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 159a30f8f8cSSatish Balay { 160a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 161dfbe8321SBarry Smith PetscErrorCode ierr; 1621302d50aSBarry Smith PetscInt i,N = m*n; 163a30f8f8cSSatish Balay MatScalar *vsingle; 164a30f8f8cSSatish Balay 165a30f8f8cSSatish Balay PetscFunctionBegin; 166a30f8f8cSSatish Balay if (N > b->setvalueslen) { 16705b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 16882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 169a30f8f8cSSatish Balay b->setvalueslen = N; 170a30f8f8cSSatish Balay } 171a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 172a30f8f8cSSatish Balay 173a30f8f8cSSatish Balay for (i=0; i<N; i++) { 174a30f8f8cSSatish Balay vsingle[i] = v[i]; 175a30f8f8cSSatish Balay } 176a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 177a30f8f8cSSatish Balay PetscFunctionReturn(0); 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 1804a2ae208SSatish Balay #undef __FUNCT__ 1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 183a30f8f8cSSatish Balay { 184a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 185dfbe8321SBarry Smith PetscErrorCode ierr; 1861302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 187a30f8f8cSSatish Balay MatScalar *vsingle; 188a30f8f8cSSatish Balay 189a30f8f8cSSatish Balay PetscFunctionBegin; 190a30f8f8cSSatish Balay if (N > b->setvalueslen) { 19105b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 19282502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 193a30f8f8cSSatish Balay b->setvalueslen = N; 194a30f8f8cSSatish Balay } 195a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 196a30f8f8cSSatish Balay for (i=0; i<N; i++) { 197a30f8f8cSSatish Balay vsingle[i] = v[i]; 198a30f8f8cSSatish Balay } 199a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 200a30f8f8cSSatish Balay PetscFunctionReturn(0); 201a30f8f8cSSatish Balay } 202a30f8f8cSSatish Balay #endif 203a30f8f8cSSatish Balay 204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 205a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 206a30f8f8cSSatish Balay */ 2074a2ae208SSatish Balay #undef __FUNCT__ 208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar" 2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 210a30f8f8cSSatish Balay { 211a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 212a30f8f8cSSatish Balay MatScalar value; 213b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 214dfbe8321SBarry Smith PetscErrorCode ierr; 2151302d50aSBarry Smith PetscInt i,j,row,col; 216899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 217899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 218899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 219a30f8f8cSSatish Balay 220a30f8f8cSSatish Balay /* Some Variables required in the macro */ 221a30f8f8cSSatish Balay Mat A = baij->A; 222a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2231302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 224a30f8f8cSSatish Balay MatScalar *aa=a->a; 225a30f8f8cSSatish Balay 226a30f8f8cSSatish Balay Mat B = baij->B; 227a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2281302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 229a30f8f8cSSatish Balay MatScalar *ba=b->a; 230a30f8f8cSSatish Balay 2311302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2321302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 233a30f8f8cSSatish Balay MatScalar *ap,*bap; 234a30f8f8cSSatish Balay 235a30f8f8cSSatish Balay /* for stash */ 236910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 237910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 238a30f8f8cSSatish Balay 239a30f8f8cSSatish Balay PetscFunctionBegin; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay if (!baij->donotstash){ 24259ffdab8SBarry Smith if (n > baij->n_loc) { 24359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 24459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 24559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 24659ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 24759ffdab8SBarry Smith baij->n_loc = n; 24859ffdab8SBarry Smith } 24959ffdab8SBarry Smith in_loc = baij->in_loc; 25059ffdab8SBarry Smith v_loc = baij->v_loc; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay for (i=0; i<m; i++) { 254a30f8f8cSSatish Balay if (im[i] < 0) continue; 2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 256899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 257a30f8f8cSSatish Balay #endif 258a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 259a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 260a30f8f8cSSatish Balay for (j=0; j<n; j++) { 26101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 26201b2bd88SHong Zhang if (a->ignore_ltriangular){ 26301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 26401b2bd88SHong Zhang } else { 26501b2bd88SHong Zhang SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)"); 26601b2bd88SHong Zhang } 26701b2bd88SHong Zhang } 268a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 269a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 270a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 271a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 272a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 273a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 274a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 275a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 277899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);} 278a30f8f8cSSatish Balay #endif 279a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 280a30f8f8cSSatish Balay if (mat->was_assembled) { 281a30f8f8cSSatish Balay if (!baij->colmap) { 282653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 285a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28671730473SSatish Balay col = col - 1; 287a30f8f8cSSatish Balay #else 28871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 289a30f8f8cSSatish Balay #endif 290a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 291a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 292a30f8f8cSSatish Balay col = in[j]; 293a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 294a30f8f8cSSatish Balay B = baij->B; 295a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 296a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 297a30f8f8cSSatish Balay ba=b->a; 29871730473SSatish Balay } else col += in[j]%bs; 299a30f8f8cSSatish Balay } else col = in[j]; 300a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 301a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 302a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay } 305a30f8f8cSSatish Balay } else { /* off processor entry */ 306a30f8f8cSSatish Balay if (!baij->donotstash) { 307a30f8f8cSSatish Balay n_loc = 0; 308a30f8f8cSSatish Balay for (j=0; j<n; j++){ 309f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 310a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 311a30f8f8cSSatish Balay if (roworiented) { 312a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 313a30f8f8cSSatish Balay } else { 314a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay n_loc++; 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 319a30f8f8cSSatish Balay } 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay } 322a30f8f8cSSatish Balay PetscFunctionReturn(0); 323a30f8f8cSSatish Balay } 324a30f8f8cSSatish Balay 3254a2ae208SSatish Balay #undef __FUNCT__ 326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 328a30f8f8cSSatish Balay { 3290880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 330f15d580aSBarry Smith const MatScalar *value; 331f15d580aSBarry Smith MatScalar *barray=baij->barray; 3320880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 333dfbe8321SBarry Smith PetscErrorCode ierr; 334899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 335899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 336899cda47SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2; 3370880e062SHong Zhang 338a30f8f8cSSatish Balay PetscFunctionBegin; 3390880e062SHong Zhang if(!barray) { 3400880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3410880e062SHong Zhang baij->barray = barray; 3420880e062SHong Zhang } 3430880e062SHong Zhang 3440880e062SHong Zhang if (roworiented) { 3450880e062SHong Zhang stepval = (n-1)*bs; 3460880e062SHong Zhang } else { 3470880e062SHong Zhang stepval = (m-1)*bs; 3480880e062SHong Zhang } 3490880e062SHong Zhang for (i=0; i<m; i++) { 3500880e062SHong Zhang if (im[i] < 0) continue; 3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 35277431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3530880e062SHong Zhang #endif 3540880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3550880e062SHong Zhang row = im[i] - rstart; 3560880e062SHong Zhang for (j=0; j<n; j++) { 3570880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3580880e062SHong Zhang if ((roworiented) && (n == 1)) { 359f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3600880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 361f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3620880e062SHong Zhang } else { /* Here a copy is required */ 3630880e062SHong Zhang if (roworiented) { 3640880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3650880e062SHong Zhang } else { 3660880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3670880e062SHong Zhang } 3680880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3690880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3700880e062SHong Zhang *barray++ = *value++; 3710880e062SHong Zhang } 3720880e062SHong Zhang } 3730880e062SHong Zhang barray -=bs2; 3740880e062SHong Zhang } 3750880e062SHong Zhang 3760880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3770880e062SHong Zhang col = in[j] - cstart; 3780880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3790880e062SHong Zhang } 3800880e062SHong Zhang else if (in[j] < 0) continue; 3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 38277431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3830880e062SHong Zhang #endif 3840880e062SHong Zhang else { 3850880e062SHong Zhang if (mat->was_assembled) { 3860880e062SHong Zhang if (!baij->colmap) { 387653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3880880e062SHong Zhang } 3890880e062SHong Zhang 3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3921302d50aSBarry Smith { PetscInt data; 3930880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3940880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3950880e062SHong Zhang } 3960880e062SHong Zhang #else 3970880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3980880e062SHong Zhang #endif 3990880e062SHong Zhang #endif 4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4010880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4020880e062SHong Zhang col = (col - 1)/bs; 4030880e062SHong Zhang #else 4040880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4050880e062SHong Zhang #endif 4060880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4070880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4080880e062SHong Zhang col = in[j]; 4090880e062SHong Zhang } 4100880e062SHong Zhang } 4110880e062SHong Zhang else col = in[j]; 412e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4130880e062SHong Zhang } 4140880e062SHong Zhang } 4150880e062SHong Zhang } else { 4160880e062SHong Zhang if (!baij->donotstash) { 4170880e062SHong Zhang if (roworiented) { 4180880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4190880e062SHong Zhang } else { 4200880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4210880e062SHong Zhang } 4220880e062SHong Zhang } 4230880e062SHong Zhang } 4240880e062SHong Zhang } 4250880e062SHong Zhang PetscFunctionReturn(0); 426a30f8f8cSSatish Balay } 427a30f8f8cSSatish Balay 4284a2ae208SSatish Balay #undef __FUNCT__ 4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 431a30f8f8cSSatish Balay { 432f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4336849ba73SBarry Smith PetscErrorCode ierr; 434899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 435899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 436a30f8f8cSSatish Balay 437a30f8f8cSSatish Balay PetscFunctionBegin; 438a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43977431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 440899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 441a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 442a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 443a30f8f8cSSatish Balay for (j=0; j<n; j++) { 44477431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 445899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 446a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 447a30f8f8cSSatish Balay col = idxn[j] - bscstart; 448c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 449a30f8f8cSSatish Balay } else { 450a30f8f8cSSatish Balay if (!baij->colmap) { 451653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 452a30f8f8cSSatish Balay } 453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 454a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 455a30f8f8cSSatish Balay data --; 456a30f8f8cSSatish Balay #else 457a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 458a30f8f8cSSatish Balay #endif 459a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 460a30f8f8cSSatish Balay else { 461a30f8f8cSSatish Balay col = data + idxn[j]%bs; 462e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 463a30f8f8cSSatish Balay } 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay } 466a30f8f8cSSatish Balay } else { 46729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 468a30f8f8cSSatish Balay } 469a30f8f8cSSatish Balay } 470a30f8f8cSSatish Balay PetscFunctionReturn(0); 471a30f8f8cSSatish Balay } 472a30f8f8cSSatish Balay 4734a2ae208SSatish Balay #undef __FUNCT__ 4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 476a30f8f8cSSatish Balay { 477a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 478dfbe8321SBarry Smith PetscErrorCode ierr; 479a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 480a30f8f8cSSatish Balay 481a30f8f8cSSatish Balay PetscFunctionBegin; 482a30f8f8cSSatish Balay if (baij->size == 1) { 483a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 484a30f8f8cSSatish Balay } else { 485a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 486f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 487a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 488a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 489a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 490a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 491d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 492a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 493a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4940b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4950b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4960b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4970b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 498899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 499899cda47SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs; 5000b8dc8d2SHong Zhang MatScalar *v; 5010b8dc8d2SHong Zhang 502899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 503899cda47SBarry Smith rsum2 = rsum + mat->cmap.N; 504899cda47SBarry Smith ierr = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 5050b8dc8d2SHong Zhang /* Amat */ 5060b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5070b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5080b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5090b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5100b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5110b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5120b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5130b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5140b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5150b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5160b8dc8d2SHong Zhang /* non-diagonal block */ 5170b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5180b8dc8d2SHong Zhang } 5190b8dc8d2SHong Zhang } 5200b8dc8d2SHong Zhang } 5210b8dc8d2SHong Zhang } 5220b8dc8d2SHong Zhang /* Bmat */ 5230b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5240b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5250b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5260b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5270b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5280b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5290b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5300b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5310b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5320b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5330b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5340b8dc8d2SHong Zhang } 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang } 5370b8dc8d2SHong Zhang } 538899cda47SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5390b8dc8d2SHong Zhang *norm = 0.0; 540899cda47SBarry Smith for (col=0; col<mat->cmap.N; col++) { 5410b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5420b8dc8d2SHong Zhang } 5430b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 544a30f8f8cSSatish Balay } else { 54529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay } 548a30f8f8cSSatish Balay PetscFunctionReturn(0); 549a30f8f8cSSatish Balay } 550a30f8f8cSSatish Balay 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 554a30f8f8cSSatish Balay { 555a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 556dfbe8321SBarry Smith PetscErrorCode ierr; 5571302d50aSBarry Smith PetscInt nstash,reallocs; 558a30f8f8cSSatish Balay InsertMode addv; 559a30f8f8cSSatish Balay 560a30f8f8cSSatish Balay PetscFunctionBegin; 561a30f8f8cSSatish Balay if (baij->donotstash) { 562a30f8f8cSSatish Balay PetscFunctionReturn(0); 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 566a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 567a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 571a30f8f8cSSatish Balay 572899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr); 573899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 575ae15b995SBarry Smith ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 576a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 577ae15b995SBarry Smith ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 578a30f8f8cSSatish Balay PetscFunctionReturn(0); 579a30f8f8cSSatish Balay } 580a30f8f8cSSatish Balay 5814a2ae208SSatish Balay #undef __FUNCT__ 5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 584a30f8f8cSSatish Balay { 585a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 586a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5876849ba73SBarry Smith PetscErrorCode ierr; 58813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5891302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 59013f74950SBarry Smith PetscMPIInt n; 591a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 592a30f8f8cSSatish Balay MatScalar *val; 593a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 594a30f8f8cSSatish Balay 59591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 596a30f8f8cSSatish Balay PetscFunctionBegin; 597a30f8f8cSSatish Balay 598a30f8f8cSSatish Balay if (!baij->donotstash) { 599a30f8f8cSSatish Balay while (1) { 600a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 601a30f8f8cSSatish Balay if (!flg) break; 602a30f8f8cSSatish Balay 603a30f8f8cSSatish Balay for (i=0; i<n;) { 604a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 605a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 606a30f8f8cSSatish Balay if (j < n) ncols = j-i; 607a30f8f8cSSatish Balay else ncols = n-i; 608a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 609a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 610a30f8f8cSSatish Balay i = j; 611a30f8f8cSSatish Balay } 612a30f8f8cSSatish Balay } 613a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 614a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 615a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 616a30f8f8cSSatish Balay restore the original flags */ 617a30f8f8cSSatish Balay r1 = baij->roworiented; 618a30f8f8cSSatish Balay r2 = a->roworiented; 61991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 620a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 621a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 62291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 623a30f8f8cSSatish Balay while (1) { 624a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 625a30f8f8cSSatish Balay if (!flg) break; 626a30f8f8cSSatish Balay 627a30f8f8cSSatish Balay for (i=0; i<n;) { 628a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 629a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 630a30f8f8cSSatish Balay if (j < n) ncols = j-i; 631a30f8f8cSSatish Balay else ncols = n-i; 632a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 633a30f8f8cSSatish Balay i = j; 634a30f8f8cSSatish Balay } 635a30f8f8cSSatish Balay } 636a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 637a30f8f8cSSatish Balay baij->roworiented = r1; 638a30f8f8cSSatish Balay a->roworiented = r2; 63991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 643a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 644a30f8f8cSSatish Balay 645a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 646a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 647a30f8f8cSSatish Balay /* 648a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 649a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 650a30f8f8cSSatish Balay */ 651a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 652a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 653a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 654c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 660a30f8f8cSSatish Balay } 66191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 662a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 663a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 664a30f8f8cSSatish Balay 665a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 666a30f8f8cSSatish Balay baij->rowvalues = 0; 6675222a1afSHong Zhang 668a30f8f8cSSatish Balay PetscFunctionReturn(0); 669a30f8f8cSSatish Balay } 670a30f8f8cSSatish Balay 671799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 6724a2ae208SSatish Balay #undef __FUNCT__ 6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 675a30f8f8cSSatish Balay { 676a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 677dfbe8321SBarry Smith PetscErrorCode ierr; 678899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 6791302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 68032077d6dSBarry Smith PetscTruth iascii,isdraw; 681b0a32e0cSBarry Smith PetscViewer sviewer; 682f3ef73ceSBarry Smith PetscViewerFormat format; 683a30f8f8cSSatish Balay 684a30f8f8cSSatish Balay PetscFunctionBegin; 68532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 686fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68732077d6dSBarry Smith if (iascii) { 688b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 689456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 690a30f8f8cSSatish Balay MatInfo info; 691a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 694899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 695899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 696a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 698a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 700b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 70107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 702a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 703a30f8f8cSSatish Balay PetscFunctionReturn(0); 704fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 70577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 706a30f8f8cSSatish Balay PetscFunctionReturn(0); 707c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 708c1490034SHong Zhang PetscFunctionReturn(0); 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay 712a30f8f8cSSatish Balay if (isdraw) { 713b0a32e0cSBarry Smith PetscDraw draw; 714a30f8f8cSSatish Balay PetscTruth isnull; 715b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 716b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 717a30f8f8cSSatish Balay } 718a30f8f8cSSatish Balay 719a30f8f8cSSatish Balay if (size == 1) { 720e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 721a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 722a30f8f8cSSatish Balay } else { 723a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 724a30f8f8cSSatish Balay Mat A; 72565d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 72665d70643SHong Zhang Mat_SeqBAIJ *Bloc; 727899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 728a30f8f8cSSatish Balay MatScalar *a; 729a30f8f8cSSatish Balay 730f204ca49SKris Buschelman /* Should this be the same type as mat? */ 731f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 732a30f8f8cSSatish Balay if (!rank) { 733f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 734a30f8f8cSSatish Balay } else { 735f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 736a30f8f8cSSatish Balay } 737f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 738899cda47SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 740a30f8f8cSSatish Balay 741a30f8f8cSSatish Balay /* copy over the A part */ 74265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 743a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7441302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 745a30f8f8cSSatish Balay 746a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 747e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 748a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 749a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 750e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 751a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 752a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 753a30f8f8cSSatish Balay col++; a += bs; 754a30f8f8cSSatish Balay } 755a30f8f8cSSatish Balay } 756a30f8f8cSSatish Balay } 757a30f8f8cSSatish Balay /* copy over the B part */ 75865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 760a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 761e9f7bc9eSHong Zhang 762e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 763a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 764a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 765a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 766a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 767799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 768a30f8f8cSSatish Balay col++; a += bs; 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 773a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 774a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 775a30f8f8cSSatish Balay /* 776a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 777b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 778a30f8f8cSSatish Balay */ 779b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 78065d70643SHong Zhang if (!rank) { 781e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 782a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 783a30f8f8cSSatish Balay } 784b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 785a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay PetscFunctionReturn(0); 788a30f8f8cSSatish Balay } 789a30f8f8cSSatish Balay 7904a2ae208SSatish Balay #undef __FUNCT__ 7914a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 792dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 793a30f8f8cSSatish Balay { 794dfbe8321SBarry Smith PetscErrorCode ierr; 79532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 796a30f8f8cSSatish Balay 797a30f8f8cSSatish Balay PetscFunctionBegin; 79832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 799fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 800b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 801fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 80232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 803a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 804a30f8f8cSSatish Balay } else { 8051302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay PetscFunctionReturn(0); 808a30f8f8cSSatish Balay } 809a30f8f8cSSatish Balay 8104a2ae208SSatish Balay #undef __FUNCT__ 8114a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 812dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 813a30f8f8cSSatish Balay { 814a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 815dfbe8321SBarry Smith PetscErrorCode ierr; 816a30f8f8cSSatish Balay 817a30f8f8cSSatish Balay PetscFunctionBegin; 818a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 819899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 820a30f8f8cSSatish Balay #endif 821a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 822a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 823a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 824a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 825a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 8269c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 827a30f8f8cSSatish Balay #else 82805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 829a30f8f8cSSatish Balay #endif 83005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 831a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 832a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 83340781036SHong Zhang if (baij->slvec0) { 83440781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 83540781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 83640781036SHong Zhang } 83740781036SHong Zhang if (baij->slvec1) { 83840781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83940781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 84040781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 84140781036SHong Zhang } 84240781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 84305b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 84405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 84505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 846a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 84705b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 848a30f8f8cSSatish Balay #endif 84959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 85059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 851899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 852a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 853901853e0SKris Buschelman 854dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 855901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 856901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 857901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 858901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 859a30f8f8cSSatish Balay PetscFunctionReturn(0); 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay 8624a2ae208SSatish Balay #undef __FUNCT__ 863a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 864dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 865a9d4b620SHong Zhang { 866a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 867dfbe8321SBarry Smith PetscErrorCode ierr; 868899cda47SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap.bs; 869a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 870a9d4b620SHong Zhang 871a9d4b620SHong Zhang PetscFunctionBegin; 872a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 873899cda47SBarry Smith if (nt != A->cmap.n) { 874a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 875a9d4b620SHong Zhang } 876a9d4b620SHong Zhang 877a9d4b620SHong Zhang /* diagonal part */ 878a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8792dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 880a9d4b620SHong Zhang 881a9d4b620SHong Zhang /* subdiagonal part */ 882a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 883899cda47SBarry Smith CHKMEMQ; 884a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8851ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8861ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 887899cda47SBarry Smith CHKMEMQ; 888a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 889899cda47SBarry Smith CHKMEMQ; 8901ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 891a9d4b620SHong Zhang 892899cda47SBarry Smith CHKMEMQ; 893ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 894899cda47SBarry Smith CHKMEMQ; 8951ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 896899cda47SBarry Smith CHKMEMQ; 897ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 898899cda47SBarry Smith CHKMEMQ; 899a9d4b620SHong Zhang /* supperdiagonal part */ 900a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 901899cda47SBarry Smith CHKMEMQ; 902a9d4b620SHong Zhang PetscFunctionReturn(0); 903a9d4b620SHong Zhang } 904a9d4b620SHong Zhang 905a9d4b620SHong Zhang #undef __FUNCT__ 90640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 907dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 908a30f8f8cSSatish Balay { 909a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 910dfbe8321SBarry Smith PetscErrorCode ierr; 9111302d50aSBarry Smith PetscInt nt; 912a30f8f8cSSatish Balay 913a30f8f8cSSatish Balay PetscFunctionBegin; 914a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 915899cda47SBarry Smith if (nt != A->cmap.n) { 91629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 917a30f8f8cSSatish Balay } 918a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 919899cda47SBarry Smith if (nt != A->rmap.N) { 92029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 921a30f8f8cSSatish Balay } 92265d70643SHong Zhang 923ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 924b941877fSHong Zhang /* do diagonal part */ 925b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 926b941877fSHong Zhang /* do supperdiagonal part */ 927ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 928b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 929b941877fSHong Zhang /* do subdiagonal part */ 930b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 931ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 932ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 93365d70643SHong Zhang 934a30f8f8cSSatish Balay PetscFunctionReturn(0); 935a30f8f8cSSatish Balay } 936a30f8f8cSSatish Balay 9374a2ae208SSatish Balay #undef __FUNCT__ 9384a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 939dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 940a30f8f8cSSatish Balay { 941de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 942dfbe8321SBarry Smith PetscErrorCode ierr; 943899cda47SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap.bs; 944a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 945a9d4b620SHong Zhang 946a9d4b620SHong Zhang PetscFunctionBegin; 947a9d4b620SHong Zhang /* 94856faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 94956faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 950a9d4b620SHong Zhang */ 951a9d4b620SHong Zhang /* diagonal part */ 952a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9532dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 954a9d4b620SHong Zhang 955a9d4b620SHong Zhang /* subdiagonal part */ 956a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 957a9d4b620SHong Zhang 958a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9591ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9601ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 961a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9621ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 963a9d4b620SHong Zhang 964ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9651ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 966ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 967a9d4b620SHong Zhang 968a9d4b620SHong Zhang /* supperdiagonal part */ 969a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 970a9d4b620SHong Zhang 971a9d4b620SHong Zhang PetscFunctionReturn(0); 972a9d4b620SHong Zhang } 973a9d4b620SHong Zhang 974a9d4b620SHong Zhang #undef __FUNCT__ 975a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 976dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 977a9d4b620SHong Zhang { 978a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 979dfbe8321SBarry Smith PetscErrorCode ierr; 980a30f8f8cSSatish Balay 981a30f8f8cSSatish Balay PetscFunctionBegin; 982ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 983b941877fSHong Zhang /* do diagonal part */ 984b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 985b941877fSHong Zhang /* do supperdiagonal part */ 986ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 987de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 988de8b6608SHong Zhang 989b941877fSHong Zhang /* do subdiagonal part */ 990a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 991ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 992ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 993aa482183SHong Zhang 994a30f8f8cSSatish Balay PetscFunctionReturn(0); 995a30f8f8cSSatish Balay } 996a30f8f8cSSatish Balay 997a30f8f8cSSatish Balay /* 998a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 999a30f8f8cSSatish Balay diagonal block 1000a30f8f8cSSatish Balay */ 10014a2ae208SSatish Balay #undef __FUNCT__ 10024a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1003dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1004a30f8f8cSSatish Balay { 1005a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1006dfbe8321SBarry Smith PetscErrorCode ierr; 1007a30f8f8cSSatish Balay 1008a30f8f8cSSatish Balay PetscFunctionBegin; 1009899cda47SBarry Smith /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1010a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1011a30f8f8cSSatish Balay PetscFunctionReturn(0); 1012a30f8f8cSSatish Balay } 1013a30f8f8cSSatish Balay 10144a2ae208SSatish Balay #undef __FUNCT__ 10154a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1016f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1017a30f8f8cSSatish Balay { 1018a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1019dfbe8321SBarry Smith PetscErrorCode ierr; 1020a30f8f8cSSatish Balay 1021a30f8f8cSSatish Balay PetscFunctionBegin; 1022f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1023f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1024a30f8f8cSSatish Balay PetscFunctionReturn(0); 1025a30f8f8cSSatish Balay } 1026a30f8f8cSSatish Balay 10274a2ae208SSatish Balay #undef __FUNCT__ 10284a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10291302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1030a30f8f8cSSatish Balay { 1031d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1032d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1033d0d4cfc2SHong Zhang PetscErrorCode ierr; 1034899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1035899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1036899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1037d0d4cfc2SHong Zhang 1038a30f8f8cSSatish Balay PetscFunctionBegin; 1039d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1040d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1041d0d4cfc2SHong Zhang 1042d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1043d0d4cfc2SHong Zhang /* 1044d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1045d0d4cfc2SHong Zhang */ 1046d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1047d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1048d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1049d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1050d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1051d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1052d0d4cfc2SHong Zhang } 1053d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1054d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang 1057d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1058d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1059d0d4cfc2SHong Zhang 1060d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1061d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1062d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1063d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1064d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1065d0d4cfc2SHong Zhang nztot = nzA + nzB; 1066d0d4cfc2SHong Zhang 1067d0d4cfc2SHong Zhang cmap = mat->garray; 1068d0d4cfc2SHong Zhang if (v || idx) { 1069d0d4cfc2SHong Zhang if (nztot) { 1070d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1071d0d4cfc2SHong Zhang PetscInt imark = -1; 1072d0d4cfc2SHong Zhang if (v) { 1073d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1074d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1075d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1076d0d4cfc2SHong Zhang else break; 1077d0d4cfc2SHong Zhang } 1078d0d4cfc2SHong Zhang imark = i; 1079d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1080d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1081d0d4cfc2SHong Zhang } 1082d0d4cfc2SHong Zhang if (idx) { 1083d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1084d0d4cfc2SHong Zhang if (imark > -1) { 1085d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1086d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1087d0d4cfc2SHong Zhang } 1088d0d4cfc2SHong Zhang } else { 1089d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1090d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1091d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1092d0d4cfc2SHong Zhang else break; 1093d0d4cfc2SHong Zhang } 1094d0d4cfc2SHong Zhang imark = i; 1095d0d4cfc2SHong Zhang } 1096d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1097d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1098d0d4cfc2SHong Zhang } 1099d0d4cfc2SHong Zhang } else { 1100d0d4cfc2SHong Zhang if (idx) *idx = 0; 1101d0d4cfc2SHong Zhang if (v) *v = 0; 1102d0d4cfc2SHong Zhang } 1103d0d4cfc2SHong Zhang } 1104d0d4cfc2SHong Zhang *nz = nztot; 1105d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1106d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1107a30f8f8cSSatish Balay PetscFunctionReturn(0); 1108a30f8f8cSSatish Balay } 1109a30f8f8cSSatish Balay 11104a2ae208SSatish Balay #undef __FUNCT__ 11114a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11121302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1113a30f8f8cSSatish Balay { 1114a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1115a30f8f8cSSatish Balay 1116a30f8f8cSSatish Balay PetscFunctionBegin; 1117abc0a331SBarry Smith if (!baij->getrowactive) { 1118abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1119a30f8f8cSSatish Balay } 1120a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1121a30f8f8cSSatish Balay PetscFunctionReturn(0); 1122a30f8f8cSSatish Balay } 1123a30f8f8cSSatish Balay 11244a2ae208SSatish Balay #undef __FUNCT__ 1125d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1126d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1127d0d4cfc2SHong Zhang { 1128d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1129d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1130d0d4cfc2SHong Zhang 1131d0d4cfc2SHong Zhang PetscFunctionBegin; 1132d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1133d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1134d0d4cfc2SHong Zhang } 1135d0d4cfc2SHong Zhang #undef __FUNCT__ 1136d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1137d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1138d0d4cfc2SHong Zhang { 1139d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1140d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1141d0d4cfc2SHong Zhang 1142d0d4cfc2SHong Zhang PetscFunctionBegin; 1143d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1144d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1145d0d4cfc2SHong Zhang } 1146d0d4cfc2SHong Zhang 1147d0d4cfc2SHong Zhang #undef __FUNCT__ 114899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 114999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 115099cafbc1SBarry Smith { 115199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 115299cafbc1SBarry Smith PetscErrorCode ierr; 115399cafbc1SBarry Smith 115499cafbc1SBarry Smith PetscFunctionBegin; 115599cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 115699cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 115799cafbc1SBarry Smith PetscFunctionReturn(0); 115899cafbc1SBarry Smith } 115999cafbc1SBarry Smith 116099cafbc1SBarry Smith #undef __FUNCT__ 116199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 116299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 116399cafbc1SBarry Smith { 116499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 116599cafbc1SBarry Smith PetscErrorCode ierr; 116699cafbc1SBarry Smith 116799cafbc1SBarry Smith PetscFunctionBegin; 116899cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 116999cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 117099cafbc1SBarry Smith PetscFunctionReturn(0); 117199cafbc1SBarry Smith } 117299cafbc1SBarry Smith 117399cafbc1SBarry Smith #undef __FUNCT__ 11744a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1175dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1176a30f8f8cSSatish Balay { 1177a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1178dfbe8321SBarry Smith PetscErrorCode ierr; 1179a30f8f8cSSatish Balay 1180a30f8f8cSSatish Balay PetscFunctionBegin; 1181a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1182a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1183a30f8f8cSSatish Balay PetscFunctionReturn(0); 1184a30f8f8cSSatish Balay } 1185a30f8f8cSSatish Balay 11864a2ae208SSatish Balay #undef __FUNCT__ 11874a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1188dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1189a30f8f8cSSatish Balay { 1190a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1191a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1192dfbe8321SBarry Smith PetscErrorCode ierr; 1193a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1194a30f8f8cSSatish Balay 1195a30f8f8cSSatish Balay PetscFunctionBegin; 1196899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 1197a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1198a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1199a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1200a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1201a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1202a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1203a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1204a30f8f8cSSatish Balay info->nz_used = isend[0]; 1205a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1206a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1207a30f8f8cSSatish Balay info->memory = isend[3]; 1208a30f8f8cSSatish Balay info->mallocs = isend[4]; 1209a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1210d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1212a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1213a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1214a30f8f8cSSatish Balay info->memory = irecv[3]; 1215a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1216a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1217d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1218a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1219a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1220a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1221a30f8f8cSSatish Balay info->memory = irecv[3]; 1222a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1223a30f8f8cSSatish Balay } else { 122477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1225a30f8f8cSSatish Balay } 1226899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1227899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1228899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1229899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 1230a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1231a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1232a30f8f8cSSatish Balay info->factor_mallocs = 0; 1233a30f8f8cSSatish Balay PetscFunctionReturn(0); 1234a30f8f8cSSatish Balay } 1235a30f8f8cSSatish Balay 12364a2ae208SSatish Balay #undef __FUNCT__ 12374a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1238dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1239a30f8f8cSSatish Balay { 1240a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1241d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1242dfbe8321SBarry Smith PetscErrorCode ierr; 1243a30f8f8cSSatish Balay 1244a30f8f8cSSatish Balay PetscFunctionBegin; 1245e98b92d7SKris Buschelman switch (op) { 1246e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1247e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1248e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1249e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1250e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1251e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1252e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1253a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1254a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1255e98b92d7SKris Buschelman break; 1256e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1257a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1258a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1259a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1260e98b92d7SKris Buschelman break; 1261e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1262e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1263e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1264290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1265e98b92d7SKris Buschelman break; 1266e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1267a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1268a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1269a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1270e98b92d7SKris Buschelman break; 1271e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1272a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1273e98b92d7SKris Buschelman break; 1274e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 127529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1276e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1277a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1278e98b92d7SKris Buschelman break; 12799a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12809a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12819a4540c5SBarry Smith case MAT_HERMITIAN: 12829a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 128377e54ba9SKris Buschelman case MAT_SYMMETRIC: 128477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12859a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12869a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12879a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 1288290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 128977e54ba9SKris Buschelman break; 1290d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 1291d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_TRUE; 1292d0d4cfc2SHong Zhang break; 1293d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 1294d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_FALSE; 1295d0d4cfc2SHong Zhang break; 1296d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 1297d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1298d0d4cfc2SHong Zhang break; 1299e98b92d7SKris Buschelman default: 1300ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1301a30f8f8cSSatish Balay } 1302a30f8f8cSSatish Balay PetscFunctionReturn(0); 1303a30f8f8cSSatish Balay } 1304a30f8f8cSSatish Balay 13054a2ae208SSatish Balay #undef __FUNCT__ 13068115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1307dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1308a30f8f8cSSatish Balay { 1309dfbe8321SBarry Smith PetscErrorCode ierr; 1310a30f8f8cSSatish Balay PetscFunctionBegin; 1311999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13128115998fSBarry Smith PetscFunctionReturn(0); 1313a30f8f8cSSatish Balay } 1314a30f8f8cSSatish Balay 13154a2ae208SSatish Balay #undef __FUNCT__ 13164a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1317dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1318a30f8f8cSSatish Balay { 1319a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1320a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1321dfbe8321SBarry Smith PetscErrorCode ierr; 13225e90f9d9SHong Zhang PetscInt nv,m,n; 1323b3bf805bSHong Zhang PetscTruth flg; 1324a30f8f8cSSatish Balay 1325a30f8f8cSSatish Balay PetscFunctionBegin; 1326a30f8f8cSSatish Balay if (ll != rr){ 1327b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1328b3bf805bSHong Zhang if (!flg) 132929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1330a30f8f8cSSatish Balay } 1331b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1332b3bf805bSHong Zhang 13335e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13345e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1335b3bf805bSHong Zhang 13365e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13375e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13385e90f9d9SHong Zhang 1339ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13405e90f9d9SHong Zhang 13415e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1342a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13435e90f9d9SHong Zhang 13445e90f9d9SHong Zhang /* scale the diagonal part */ 1345a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1346a30f8f8cSSatish Balay 13475e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1348ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1349a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1350a30f8f8cSSatish Balay PetscFunctionReturn(0); 1351a30f8f8cSSatish Balay } 1352a30f8f8cSSatish Balay 13534a2ae208SSatish Balay #undef __FUNCT__ 13544a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1355dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1356a30f8f8cSSatish Balay { 1357f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1358dfbe8321SBarry Smith PetscErrorCode ierr; 1359a30f8f8cSSatish Balay 1360a30f8f8cSSatish Balay PetscFunctionBegin; 1361a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1362a30f8f8cSSatish Balay PetscFunctionReturn(0); 1363a30f8f8cSSatish Balay } 1364a30f8f8cSSatish Balay 13656849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1366a30f8f8cSSatish Balay 13674a2ae208SSatish Balay #undef __FUNCT__ 13684a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1369dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1370a30f8f8cSSatish Balay { 1371a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1372a30f8f8cSSatish Balay Mat a,b,c,d; 1373a30f8f8cSSatish Balay PetscTruth flg; 1374dfbe8321SBarry Smith PetscErrorCode ierr; 1375a30f8f8cSSatish Balay 1376a30f8f8cSSatish Balay PetscFunctionBegin; 1377a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1378a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1379a30f8f8cSSatish Balay 1380a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1381abc0a331SBarry Smith if (flg) { 1382a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1383a30f8f8cSSatish Balay } 1384a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1385a30f8f8cSSatish Balay PetscFunctionReturn(0); 1386a30f8f8cSSatish Balay } 1387a30f8f8cSSatish Balay 13884a2ae208SSatish Balay #undef __FUNCT__ 13893c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13903c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13913c896bc6SHong Zhang { 13923c896bc6SHong Zhang PetscErrorCode ierr; 13933c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13943c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13953c896bc6SHong Zhang 13963c896bc6SHong Zhang PetscFunctionBegin; 13973c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13983c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1399d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 14003c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1401d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14023c896bc6SHong Zhang } else { 14033c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14043c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14053c896bc6SHong Zhang } 14063c896bc6SHong Zhang PetscFunctionReturn(0); 14073c896bc6SHong Zhang } 14083c896bc6SHong Zhang 14093c896bc6SHong Zhang #undef __FUNCT__ 14104a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1411dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1412273d9f13SBarry Smith { 1413dfbe8321SBarry Smith PetscErrorCode ierr; 1414273d9f13SBarry Smith 1415273d9f13SBarry Smith PetscFunctionBegin; 14167edd0491SSatish Balay ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1417273d9f13SBarry Smith PetscFunctionReturn(0); 1418273d9f13SBarry Smith } 1419a5e6ed63SBarry Smith 14204fe895cdSHong Zhang #include "petscblaslapack.h" 14214fe895cdSHong Zhang #undef __FUNCT__ 14224fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14234fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14244fe895cdSHong Zhang { 14254fe895cdSHong Zhang PetscErrorCode ierr; 14264fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14274fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14284fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14294fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14304fe895cdSHong Zhang 14314fe895cdSHong Zhang PetscFunctionBegin; 14324fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14334fe895cdSHong Zhang PetscScalar alpha = a; 14344fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14354fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14364fe895cdSHong Zhang bnz = (PetscBLASInt)xa->nz; 14374fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14384fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14394fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14404fe895cdSHong Zhang bnz = (PetscBLASInt)xb->nz; 14414fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14424fe895cdSHong Zhang } else { 1443d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14444fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1445d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14464fe895cdSHong Zhang } 14474fe895cdSHong Zhang PetscFunctionReturn(0); 14484fe895cdSHong Zhang } 14494fe895cdSHong Zhang 1450a5e6ed63SBarry Smith #undef __FUNCT__ 1451a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14521302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1453a5e6ed63SBarry Smith { 14546849ba73SBarry Smith PetscErrorCode ierr; 14551302d50aSBarry Smith PetscInt i; 1456a5e6ed63SBarry Smith PetscTruth flg; 1457a5e6ed63SBarry Smith 14586849ba73SBarry Smith PetscFunctionBegin; 1459a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1460a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1461a5e6ed63SBarry Smith if (!flg) { 14621302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1463a5e6ed63SBarry Smith } 1464a5e6ed63SBarry Smith } 1465a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1466a5e6ed63SBarry Smith PetscFunctionReturn(0); 1467a5e6ed63SBarry Smith } 1468a5e6ed63SBarry Smith 1469a5e6ed63SBarry Smith 1470a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1471a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1472a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1473a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1474a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1475a9d4b620SHong Zhang MatMult_MPISBAIJ, 147697304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1477431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1478431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 148297304618SKris Buschelman /*10*/ 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 14852798e883SHong Zhang MatRelax_MPISBAIJ, 1486a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 148797304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1488a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1489a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1490a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1491a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 149297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1493a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1496a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1497dcf5cc72SBarry Smith /*25*/ 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay 0, 150297304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1503b5df2d14SHong Zhang 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 150797304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 15124fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1513a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1514d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1515a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15163c896bc6SHong Zhang MatCopy_MPISBAIJ, 15178c07d4e3SBarry Smith /*45*/ 0, 1518a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1519a30f8f8cSSatish Balay 0, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay 0, 1522521d7252SBarry Smith /*50*/ 0, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 152797304618SKris Buschelman /*55*/ 0, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 153297304618SKris Buschelman /*60*/ 0, 1533a30f8f8cSSatish Balay 0, 1534a30f8f8cSSatish Balay 0, 1535357abbc8SBarry Smith 0, 153624d5174aSHong Zhang 0, 153797304618SKris Buschelman /*65*/ 0, 153824d5174aSHong Zhang 0, 153924d5174aSHong Zhang 0, 154024d5174aSHong Zhang 0, 154124d5174aSHong Zhang 0, 1542985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPISBAIJ, 154324d5174aSHong Zhang 0, 154497304618SKris Buschelman 0, 154597304618SKris Buschelman 0, 154697304618SKris Buschelman 0, 154797304618SKris Buschelman /*75*/ 0, 154897304618SKris Buschelman 0, 154997304618SKris Buschelman 0, 155097304618SKris Buschelman 0, 155197304618SKris Buschelman 0, 155297304618SKris Buschelman /*80*/ 0, 155397304618SKris Buschelman 0, 155497304618SKris Buschelman 0, 155597304618SKris Buschelman 0, 1556865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1557865e5f61SKris Buschelman /*85*/ 0, 1558865e5f61SKris Buschelman 0, 1559865e5f61SKris Buschelman 0, 1560865e5f61SKris Buschelman 0, 1561865e5f61SKris Buschelman 0, 1562865e5f61SKris Buschelman /*90*/ 0, 1563865e5f61SKris Buschelman 0, 1564865e5f61SKris Buschelman 0, 1565865e5f61SKris Buschelman 0, 1566865e5f61SKris Buschelman 0, 1567865e5f61SKris Buschelman /*95*/ 0, 1568865e5f61SKris Buschelman 0, 1569865e5f61SKris Buschelman 0, 157099cafbc1SBarry Smith 0, 157199cafbc1SBarry Smith 0, 157299cafbc1SBarry Smith /*100*/0, 157399cafbc1SBarry Smith 0, 157499cafbc1SBarry Smith 0, 157599cafbc1SBarry Smith 0, 157699cafbc1SBarry Smith 0, 157799cafbc1SBarry Smith /*105*/0, 157899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1579d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1580d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1581d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 158299cafbc1SBarry Smith }; 1583a30f8f8cSSatish Balay 1584a30f8f8cSSatish Balay 1585a30f8f8cSSatish Balay EXTERN_C_BEGIN 15864a2ae208SSatish Balay #undef __FUNCT__ 15874a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1588be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1589a30f8f8cSSatish Balay { 1590a30f8f8cSSatish Balay PetscFunctionBegin; 1591a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1592a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1593a30f8f8cSSatish Balay PetscFunctionReturn(0); 1594a30f8f8cSSatish Balay } 1595a30f8f8cSSatish Balay EXTERN_C_END 1596a30f8f8cSSatish Balay 1597273d9f13SBarry Smith EXTERN_C_BEGIN 15984a2ae208SSatish Balay #undef __FUNCT__ 1599a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1600be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1601a23d5eceSKris Buschelman { 1602a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1603dfbe8321SBarry Smith PetscErrorCode ierr; 16041302d50aSBarry Smith PetscInt i,mbs,Mbs; 1605a23d5eceSKris Buschelman 1606a23d5eceSKris Buschelman PetscFunctionBegin; 160777925062SSatish Balay ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 16088c07d4e3SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 16098c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1610a23d5eceSKris Buschelman 1611a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1612a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1613a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 161477431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 161577431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1616899cda47SBarry Smith 1617899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 16186148ca0dSBarry Smith ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr); 16196148ca0dSBarry Smith ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr); 1620899cda47SBarry Smith 1621a23d5eceSKris Buschelman if (d_nnz) { 1622899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 162377431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1624a23d5eceSKris Buschelman } 1625a23d5eceSKris Buschelman } 1626a23d5eceSKris Buschelman if (o_nnz) { 1627899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 162877431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1629a23d5eceSKris Buschelman } 1630a23d5eceSKris Buschelman } 1631a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1632a23d5eceSKris Buschelman 1633a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1634899cda47SBarry Smith mbs = B->rmap.n/bs; 1635899cda47SBarry Smith Mbs = B->rmap.N/bs; 1636899cda47SBarry Smith if (mbs*bs != B->rmap.n) { 1637899cda47SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs); 1638a23d5eceSKris Buschelman } 1639a23d5eceSKris Buschelman 1640899cda47SBarry Smith B->rmap.bs = bs; 1641a23d5eceSKris Buschelman b->bs2 = bs*bs; 1642a23d5eceSKris Buschelman b->mbs = mbs; 1643a23d5eceSKris Buschelman b->nbs = mbs; 1644a23d5eceSKris Buschelman b->Mbs = Mbs; 1645a23d5eceSKris Buschelman b->Nbs = Mbs; 1646a23d5eceSKris Buschelman 1647a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1648899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 1649a23d5eceSKris Buschelman } 1650899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 1651899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 1652a23d5eceSKris Buschelman 1653899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 1654899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 1655a23d5eceSKris Buschelman 1656f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1657899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 16589c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1659c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 166052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16619c097c71SKris Buschelman 1662f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1663899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 16644aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1665589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 166652e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1667a23d5eceSKris Buschelman 1668a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1669a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1670a23d5eceSKris Buschelman 1671a23d5eceSKris Buschelman PetscFunctionReturn(0); 1672a23d5eceSKris Buschelman } 1673a23d5eceSKris Buschelman EXTERN_C_END 1674a23d5eceSKris Buschelman 16750bad9183SKris Buschelman /*MC 1676fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16770bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16780bad9183SKris Buschelman 16790bad9183SKris Buschelman Options Database Keys: 16800bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16810bad9183SKris Buschelman 16820bad9183SKris Buschelman Level: beginner 16830bad9183SKris Buschelman 16840bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16850bad9183SKris Buschelman M*/ 16860bad9183SKris Buschelman 1687a23d5eceSKris Buschelman EXTERN_C_BEGIN 1688a23d5eceSKris Buschelman #undef __FUNCT__ 16894a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1690be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1691b5df2d14SHong Zhang { 1692b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1693dfbe8321SBarry Smith PetscErrorCode ierr; 1694b5df2d14SHong Zhang PetscTruth flg; 1695b5df2d14SHong Zhang 1696b5df2d14SHong Zhang PetscFunctionBegin; 1697b5df2d14SHong Zhang 1698*38f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1699b0a32e0cSBarry Smith B->data = (void*)b; 1700b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1701b5df2d14SHong Zhang 1702b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1703b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1704b5df2d14SHong Zhang B->mapping = 0; 1705b5df2d14SHong Zhang B->factor = 0; 1706b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1707b5df2d14SHong Zhang 1708b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1709b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1710b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1711b5df2d14SHong Zhang 1712b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1713899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1714b5df2d14SHong Zhang 1715b5df2d14SHong Zhang /* build cache for off array entries formed */ 1716b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1717b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1718b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1719b5df2d14SHong Zhang b->garray = PETSC_NULL; 1720b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1721b5df2d14SHong Zhang 1722f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1723b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 172464a35ccbSBarry Smith b->setvalueslen = 0; 1725b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1726b5df2d14SHong Zhang #endif 1727b5df2d14SHong Zhang 1728b5df2d14SHong Zhang /* stuff used in block assembly */ 1729b5df2d14SHong Zhang b->barray = 0; 1730b5df2d14SHong Zhang 1731b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1732b5df2d14SHong Zhang b->lvec = 0; 1733b5df2d14SHong Zhang b->Mvctx = 0; 173440781036SHong Zhang b->slvec0 = 0; 173540781036SHong Zhang b->slvec0b = 0; 173640781036SHong Zhang b->slvec1 = 0; 173740781036SHong Zhang b->slvec1a = 0; 173840781036SHong Zhang b->slvec1b = 0; 173940781036SHong Zhang b->sMvctx = 0; 1740b5df2d14SHong Zhang 1741b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1742b5df2d14SHong Zhang b->rowindices = 0; 1743b5df2d14SHong Zhang b->rowvalues = 0; 1744b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1745b5df2d14SHong Zhang 1746b5df2d14SHong Zhang /* hash table stuff */ 1747b5df2d14SHong Zhang b->ht = 0; 1748b5df2d14SHong Zhang b->hd = 0; 1749b5df2d14SHong Zhang b->ht_size = 0; 1750b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1751b5df2d14SHong Zhang b->ht_fact = 0; 1752b5df2d14SHong Zhang b->ht_total_ct = 0; 1753b5df2d14SHong Zhang b->ht_insert_ct = 0; 1754b5df2d14SHong Zhang 175559ffdab8SBarry Smith b->in_loc = 0; 175659ffdab8SBarry Smith b->v_loc = 0; 175759ffdab8SBarry Smith b->n_loc = 0; 175877925062SSatish Balay ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17598c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1760b5df2d14SHong Zhang if (flg) { 1761f6275e2eSBarry Smith PetscReal fact = 1.39; 1762b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 17638c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1764b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1765b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1766ae15b995SBarry Smith ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1767b5df2d14SHong Zhang } 17688c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17698c07d4e3SBarry Smith 1770b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1771b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1772b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1773b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1774b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1775b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1776b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1777b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1778b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1779a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1780a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1781a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 178223ce1328SBarry Smith B->symmetric = PETSC_TRUE; 178323ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 178423ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 178523ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 178617667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1787b5df2d14SHong Zhang PetscFunctionReturn(0); 1788b5df2d14SHong Zhang } 1789273d9f13SBarry Smith EXTERN_C_END 1790b5df2d14SHong Zhang 1791209238afSKris Buschelman /*MC 1792002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1793209238afSKris Buschelman 1794209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1795209238afSKris Buschelman and MATMPISBAIJ otherwise. 1796209238afSKris Buschelman 1797209238afSKris Buschelman Options Database Keys: 1798209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1799209238afSKris Buschelman 1800209238afSKris Buschelman Level: beginner 1801209238afSKris Buschelman 1802209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1803209238afSKris Buschelman M*/ 1804209238afSKris Buschelman 1805209238afSKris Buschelman EXTERN_C_BEGIN 1806209238afSKris Buschelman #undef __FUNCT__ 1807209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1808be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1809dfbe8321SBarry Smith { 18106849ba73SBarry Smith PetscErrorCode ierr; 18111302d50aSBarry Smith PetscMPIInt size; 1812209238afSKris Buschelman 1813209238afSKris Buschelman PetscFunctionBegin; 1814209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1815209238afSKris Buschelman if (size == 1) { 1816209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1817209238afSKris Buschelman } else { 1818209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1819209238afSKris Buschelman } 1820209238afSKris Buschelman PetscFunctionReturn(0); 1821209238afSKris Buschelman } 1822209238afSKris Buschelman EXTERN_C_END 1823209238afSKris Buschelman 18244a2ae208SSatish Balay #undef __FUNCT__ 18254a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1826b5df2d14SHong Zhang /*@C 1827b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1828b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1829b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1830b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1831b5df2d14SHong Zhang 1832b5df2d14SHong Zhang Collective on Mat 1833b5df2d14SHong Zhang 1834b5df2d14SHong Zhang Input Parameters: 1835b5df2d14SHong Zhang + A - the matrix 1836b5df2d14SHong Zhang . bs - size of blockk 1837b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1838b5df2d14SHong Zhang submatrix (same for all local rows) 1839b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18406d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18416d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18426d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1843b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1844b5df2d14SHong Zhang submatrix (same for all local rows). 1845b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1846b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1847b5df2d14SHong Zhang each block row) or PETSC_NULL. 1848b5df2d14SHong Zhang 1849b5df2d14SHong Zhang 1850b5df2d14SHong Zhang Options Database Keys: 1851b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1852b5df2d14SHong Zhang block calculations (much slower) 1853b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1854b5df2d14SHong Zhang 1855b5df2d14SHong Zhang Notes: 1856b5df2d14SHong Zhang 1857b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1858b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1859b5df2d14SHong Zhang 186049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 186149a6f317SBarry Smith 1862b5df2d14SHong Zhang Storage Information: 1863b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1864b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1865b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1866b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1867b5df2d14SHong Zhang 1868b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1869b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1870b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1871b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1872b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1873b5df2d14SHong Zhang 1874b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1875b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1876b5df2d14SHong Zhang 1877b5df2d14SHong Zhang .vb 1878b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1879b5df2d14SHong Zhang ------------------- 1880b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1881b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1882b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1883b5df2d14SHong Zhang ------------------- 1884b5df2d14SHong Zhang .ve 1885b5df2d14SHong Zhang 1886b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1887b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18886d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18896d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1890b5df2d14SHong Zhang 18916d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18926d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1893b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1894b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1895b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1896b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1897b5df2d14SHong Zhang matrices. 1898b5df2d14SHong Zhang 1899b5df2d14SHong Zhang Level: intermediate 1900b5df2d14SHong Zhang 1901b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1902b5df2d14SHong Zhang 1903b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1904b5df2d14SHong Zhang @*/ 1905be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1906b5df2d14SHong Zhang { 19071302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1908b5df2d14SHong Zhang 1909b5df2d14SHong Zhang PetscFunctionBegin; 1910a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1911a23d5eceSKris Buschelman if (f) { 1912a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1913b5df2d14SHong Zhang } 1914b5df2d14SHong Zhang PetscFunctionReturn(0); 1915b5df2d14SHong Zhang } 1916b5df2d14SHong Zhang 19174a2ae208SSatish Balay #undef __FUNCT__ 19184a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1919a30f8f8cSSatish Balay /*@C 1920a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1921a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1922a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1923a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1924a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1925a30f8f8cSSatish Balay 1926a30f8f8cSSatish Balay Collective on MPI_Comm 1927a30f8f8cSSatish Balay 1928a30f8f8cSSatish Balay Input Parameters: 1929a30f8f8cSSatish Balay + comm - MPI communicator 1930a30f8f8cSSatish Balay . bs - size of blockk 1931a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1932a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1933a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1934a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1935a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1936a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1937a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1938a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1939a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1940a30f8f8cSSatish Balay submatrix (same for all local rows) 1941a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19426d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19436d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19446d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1945a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1946a30f8f8cSSatish Balay submatrix (same for all local rows). 1947a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1948a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1949a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1950a30f8f8cSSatish Balay 1951a30f8f8cSSatish Balay Output Parameter: 1952a30f8f8cSSatish Balay . A - the matrix 1953a30f8f8cSSatish Balay 1954a30f8f8cSSatish Balay Options Database Keys: 1955a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1956a30f8f8cSSatish Balay block calculations (much slower) 1957a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1958a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1959a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1960a30f8f8cSSatish Balay 1961a30f8f8cSSatish Balay Notes: 1962d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19636d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1964d1be2dadSMatthew Knepley 1965a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1966a30f8f8cSSatish Balay (possibly both). 1967a30f8f8cSSatish Balay 1968a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1969a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1970a30f8f8cSSatish Balay 197149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 197249a6f317SBarry Smith 1973a30f8f8cSSatish Balay Storage Information: 1974a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1975a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1976a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1977a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1978a30f8f8cSSatish Balay 1979a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1980a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1981a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1982a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1983a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1984a30f8f8cSSatish Balay 1985a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1986a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1987a30f8f8cSSatish Balay 1988a30f8f8cSSatish Balay .vb 1989a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1990a30f8f8cSSatish Balay ------------------- 1991a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1992a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1993a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1994a30f8f8cSSatish Balay ------------------- 1995a30f8f8cSSatish Balay .ve 1996a30f8f8cSSatish Balay 1997a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1998a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19996d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20006d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2001a30f8f8cSSatish Balay 20026d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20036d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2004a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2005a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2006a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2007a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2008a30f8f8cSSatish Balay matrices. 2009a30f8f8cSSatish Balay 2010a30f8f8cSSatish Balay Level: intermediate 2011a30f8f8cSSatish Balay 2012a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2013a30f8f8cSSatish Balay 2014a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2015a30f8f8cSSatish Balay @*/ 2016a30f8f8cSSatish Balay 2017be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2018a30f8f8cSSatish Balay { 20196849ba73SBarry Smith PetscErrorCode ierr; 20201302d50aSBarry Smith PetscMPIInt size; 2021a30f8f8cSSatish Balay 2022a30f8f8cSSatish Balay PetscFunctionBegin; 2023f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2024f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2025273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2026273d9f13SBarry Smith if (size > 1) { 2027b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2028b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2029273d9f13SBarry Smith } else { 2030273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2031273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2032273d9f13SBarry Smith } 2033a30f8f8cSSatish Balay PetscFunctionReturn(0); 2034a30f8f8cSSatish Balay } 2035a30f8f8cSSatish Balay 2036a30f8f8cSSatish Balay 20374a2ae208SSatish Balay #undef __FUNCT__ 20384a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20396849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2040a30f8f8cSSatish Balay { 2041a30f8f8cSSatish Balay Mat mat; 2042a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2043dfbe8321SBarry Smith PetscErrorCode ierr; 2044899cda47SBarry Smith PetscInt len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs; 2045387bc808SHong Zhang PetscScalar *array; 2046a30f8f8cSSatish Balay 2047a30f8f8cSSatish Balay PetscFunctionBegin; 2048a30f8f8cSSatish Balay *newmat = 0; 2049f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2050899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 2051be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20521d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2053899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 2054899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2055e1b6402fSHong Zhang 205682327fa8SHong Zhang mat->factor = matin->factor; 2057273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 205882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20597fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20607fff6886SHong Zhang 2061b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2062a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2063a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2064a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2065a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2066a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2067a30f8f8cSSatish Balay 2068899cda47SBarry Smith 2069a30f8f8cSSatish Balay a->size = oldmat->size; 2070a30f8f8cSSatish Balay a->rank = oldmat->rank; 2071a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2072a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2073a30f8f8cSSatish Balay a->rowindices = 0; 2074a30f8f8cSSatish Balay a->rowvalues = 0; 2075a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2076a30f8f8cSSatish Balay a->barray = 0; 2077899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2078899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2079899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2080899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2081a30f8f8cSSatish Balay 2082a30f8f8cSSatish Balay /* hash table stuff */ 2083a30f8f8cSSatish Balay a->ht = 0; 2084a30f8f8cSSatish Balay a->hd = 0; 2085a30f8f8cSSatish Balay a->ht_size = 0; 2086a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2087a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2088a30f8f8cSSatish Balay a->ht_total_ct = 0; 2089a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2090a30f8f8cSSatish Balay 2091899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2092a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2093899cda47SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 2094a30f8f8cSSatish Balay if (oldmat->colmap) { 2095a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2096a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2097a30f8f8cSSatish Balay #else 20981302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 209952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21001302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2101a30f8f8cSSatish Balay #endif 2102a30f8f8cSSatish Balay } else a->colmap = 0; 2103387bc808SHong Zhang 2104a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21051302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 210652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21071302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2108a30f8f8cSSatish Balay } else a->garray = 0; 2109a30f8f8cSSatish Balay 2110a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 211152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2112a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 211352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 211482327fa8SHong Zhang 211582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 211652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 211782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 211852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2119387bc808SHong Zhang 2120387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21211ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2122387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2123387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21241ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21251ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2126387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21271ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 212852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 213052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 213152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 213252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2133387bc808SHong Zhang 2134387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2135387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2136387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 213752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 213882327fa8SHong Zhang 2139a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 214052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2141a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 214252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2143b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2144a30f8f8cSSatish Balay *newmat = mat; 2145a30f8f8cSSatish Balay PetscFunctionReturn(0); 2146a30f8f8cSSatish Balay } 2147a30f8f8cSSatish Balay 2148a30f8f8cSSatish Balay #include "petscsys.h" 2149a30f8f8cSSatish Balay 21504a2ae208SSatish Balay #undef __FUNCT__ 21514a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2152f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2153a30f8f8cSSatish Balay { 2154a30f8f8cSSatish Balay Mat A; 21556849ba73SBarry Smith PetscErrorCode ierr; 215613f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 215787828ca2SBarry Smith PetscScalar *vals,*buf; 2158a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2159a30f8f8cSSatish Balay MPI_Status status; 21602fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 216113f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21622fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21631302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21641302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21651302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 216613f74950SBarry Smith int fd; 2167a30f8f8cSSatish Balay 2168a30f8f8cSSatish Balay PetscFunctionBegin; 216977925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21708c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21718c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2172a30f8f8cSSatish Balay 2173a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2174a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2175a30f8f8cSSatish Balay if (!rank) { 2176b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2178552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2179a30f8f8cSSatish Balay if (header[3] < 0) { 218029bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2181a30f8f8cSSatish Balay } 2182a30f8f8cSSatish Balay } 2183a30f8f8cSSatish Balay 2184a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2186a30f8f8cSSatish Balay 218729bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2188a30f8f8cSSatish Balay 2189a30f8f8cSSatish Balay /* 2190a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2191a30f8f8cSSatish Balay divisible by the blocksize 2192a30f8f8cSSatish Balay */ 2193a30f8f8cSSatish Balay Mbs = M/bs; 2194a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2195a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2196a30f8f8cSSatish Balay else Mbs++; 2197a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2198ae15b995SBarry Smith ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2199a30f8f8cSSatish Balay } 2200a30f8f8cSSatish Balay 2201a30f8f8cSSatish Balay /* determine ownership of all rows */ 2202a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2203a30f8f8cSSatish Balay m = mbs*bs; 2204a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay browners = rowners + size + 1; 2206a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay rowners[0] = 0; 2208a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2209a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2210a30f8f8cSSatish Balay rstart = rowners[rank]; 2211a30f8f8cSSatish Balay rend = rowners[rank+1]; 2212a30f8f8cSSatish Balay 2213a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22142fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay if (!rank) { 22161302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2217a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2218a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2219a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2221a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay } else { 2224a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay } 2226a30f8f8cSSatish Balay 22270222edb1SHong Zhang if (!rank) { /* procs[0] */ 2228a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22291302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22301302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2231a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2232a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2233a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2234a30f8f8cSSatish Balay } 2235a30f8f8cSSatish Balay } 2236a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2237a30f8f8cSSatish Balay 2238a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2239a30f8f8cSSatish Balay maxnz = 0; 2240a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2241a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2242a30f8f8cSSatish Balay } 22431302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2244a30f8f8cSSatish Balay 2245a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2246a30f8f8cSSatish Balay nz = procsnz[0]; 22471302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2248a30f8f8cSSatish Balay mycols = ibuf; 2249a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2250a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2252a30f8f8cSSatish Balay 2253a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2254a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2255a30f8f8cSSatish Balay nz = procsnz[i]; 2256a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2257a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2258a30f8f8cSSatish Balay } 2259a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2260a30f8f8cSSatish Balay if (size != 1) { 2261a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2262a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2264a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay } 2266a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22670222edb1SHong Zhang } else { /* procs[i], i>0 */ 2268a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2269a30f8f8cSSatish Balay nz = 0; 2270a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2271a30f8f8cSSatish Balay nz += locrowlens[i]; 2272a30f8f8cSSatish Balay } 22731302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2274a30f8f8cSSatish Balay mycols = ibuf; 2275a30f8f8cSSatish Balay /* receive message of column indices*/ 2276a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2277a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 227829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2279a30f8f8cSSatish Balay } 2280a30f8f8cSSatish Balay 2281a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22821302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2283a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22841302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22851302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2286a30f8f8cSSatish Balay masked1 = mask + Mbs; 2287a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2288a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2289a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2290a30f8f8cSSatish Balay dcount = 0; 2291a30f8f8cSSatish Balay odcount = 0; 2292a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2293a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2294a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22950222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2296a30f8f8cSSatish Balay if (!mask[tmp]) { 2297a30f8f8cSSatish Balay mask[tmp] = 1; 22980222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22990222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2300a30f8f8cSSatish Balay } 2301a30f8f8cSSatish Balay } 2302a30f8f8cSSatish Balay rowcount++; 2303a30f8f8cSSatish Balay } 2304a30f8f8cSSatish Balay 23050222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23060222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2307a30f8f8cSSatish Balay 2308a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2309a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2310a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2311a30f8f8cSSatish Balay } 2312a30f8f8cSSatish Balay 2313a30f8f8cSSatish Balay /* create our matrix */ 2314f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2315f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 231622191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 231722191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2318273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2319a30f8f8cSSatish Balay 2320a30f8f8cSSatish Balay if (!rank) { 232187828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2322a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2323a30f8f8cSSatish Balay nz = procsnz[0]; 2324a30f8f8cSSatish Balay vals = buf; 2325a30f8f8cSSatish Balay mycols = ibuf; 2326a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2327a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2328a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2329a30f8f8cSSatish Balay 2330a30f8f8cSSatish Balay /* insert into matrix */ 2331a30f8f8cSSatish Balay jj = rstart*bs; 2332a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23337e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2334a30f8f8cSSatish Balay mycols += locrowlens[i]; 2335a30f8f8cSSatish Balay vals += locrowlens[i]; 2336a30f8f8cSSatish Balay jj++; 2337a30f8f8cSSatish Balay } 23387e06b45fSHong Zhang 2339a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2340a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2341a30f8f8cSSatish Balay nz = procsnz[i]; 2342a30f8f8cSSatish Balay vals = buf; 2343a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2344a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2345a30f8f8cSSatish Balay } 2346a30f8f8cSSatish Balay /* the last proc */ 2347a30f8f8cSSatish Balay if (size != 1){ 2348a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2349a30f8f8cSSatish Balay vals = buf; 2350a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2351a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2352a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2353a30f8f8cSSatish Balay } 2354a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23557e06b45fSHong Zhang 2356a30f8f8cSSatish Balay } else { 2357a30f8f8cSSatish Balay /* receive numeric values */ 235887828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2359a30f8f8cSSatish Balay 2360a30f8f8cSSatish Balay /* receive message of values*/ 2361a30f8f8cSSatish Balay vals = buf; 2362a30f8f8cSSatish Balay mycols = ibuf; 2363a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2364a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 236529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2366a30f8f8cSSatish Balay 2367a30f8f8cSSatish Balay /* insert into matrix */ 2368a30f8f8cSSatish Balay jj = rstart*bs; 2369a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2370a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay mycols += locrowlens[i]; 2372a30f8f8cSSatish Balay vals += locrowlens[i]; 2373a30f8f8cSSatish Balay jj++; 2374a30f8f8cSSatish Balay } 2375a30f8f8cSSatish Balay } 23767e06b45fSHong Zhang 2377a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2378a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2379a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2380a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2381a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2382a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2383a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2384a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238522191285SKris Buschelman *newmat = A; 2386a30f8f8cSSatish Balay PetscFunctionReturn(0); 2387a30f8f8cSSatish Balay } 2388a30f8f8cSSatish Balay 23894a2ae208SSatish Balay #undef __FUNCT__ 23904a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2391dcf5cc72SBarry Smith /*XXXXX@ 2392a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2393a30f8f8cSSatish Balay 2394a30f8f8cSSatish Balay Input Parameters: 2395a30f8f8cSSatish Balay . mat - the matrix 2396a30f8f8cSSatish Balay . fact - factor 2397a30f8f8cSSatish Balay 2398a30f8f8cSSatish Balay Collective on Mat 2399a30f8f8cSSatish Balay 2400a30f8f8cSSatish Balay Level: advanced 2401a30f8f8cSSatish Balay 2402a30f8f8cSSatish Balay Notes: 2403a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2404a30f8f8cSSatish Balay 2405a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2406a30f8f8cSSatish Balay 2407a30f8f8cSSatish Balay .seealso: MatSetOption() 2408dcf5cc72SBarry Smith @XXXXX*/ 2409dcf5cc72SBarry Smith 241024d5174aSHong Zhang 24114a2ae208SSatish Balay #undef __FUNCT__ 2412985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2413985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 241424d5174aSHong Zhang { 241524d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2416f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2417ca54ac64SHong Zhang PetscReal atmp; 241887828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2419dfbe8321SBarry Smith PetscErrorCode ierr; 24201302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24211302d50aSBarry Smith PetscMPIInt rank,size; 24221302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 242387828ca2SBarry Smith PetscScalar *va; 24248a1c53f2SBarry Smith MatScalar *ba; 2425f4c0e9e4SHong Zhang MPI_Status stat; 242624d5174aSHong Zhang 242724d5174aSHong Zhang PetscFunctionBegin; 2428985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2429985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24301ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2431f4c0e9e4SHong Zhang 243256faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 243356faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2434f4c0e9e4SHong Zhang 2435899cda47SBarry Smith bs = A->rmap.bs; 2436f4c0e9e4SHong Zhang mbs = a->mbs; 2437f4c0e9e4SHong Zhang Mbs = a->Mbs; 2438f4c0e9e4SHong Zhang ba = b->a; 2439f4c0e9e4SHong Zhang bi = b->i; 2440f4c0e9e4SHong Zhang bj = b->j; 2441f4c0e9e4SHong Zhang 2442f4c0e9e4SHong Zhang /* find ownerships */ 2443899cda47SBarry Smith rowners_bs = A->rmap.range; 2444f4c0e9e4SHong Zhang 2445f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 244682502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2447ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2448f4c0e9e4SHong Zhang 2449f4c0e9e4SHong Zhang /* row_max for B */ 2450b8475685SHong Zhang if (rank != size-1){ 2451f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2452f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2453f4c0e9e4SHong Zhang brow = bs*i; 2454f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2455f4c0e9e4SHong Zhang bcol = bs*(*bj); 2456f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2457ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 245804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2459f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2460f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2461ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2462ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2463f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2464f4c0e9e4SHong Zhang } 2465f4c0e9e4SHong Zhang } 2466f4c0e9e4SHong Zhang bj++; 2467f4c0e9e4SHong Zhang } 2468f4c0e9e4SHong Zhang } 2469f4c0e9e4SHong Zhang 2470f4c0e9e4SHong Zhang /* send values to its owners */ 2471f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2472f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2473ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 247456faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2475ca54ac64SHong Zhang } 2476f4c0e9e4SHong Zhang } 2477f4c0e9e4SHong Zhang 2478f4c0e9e4SHong Zhang /* receive values */ 2479ca54ac64SHong Zhang if (rank){ 2480f4c0e9e4SHong Zhang rvalues = work; 2481ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2482f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 248356faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2484f4c0e9e4SHong Zhang /* process values */ 2485f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2486ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2487f4c0e9e4SHong Zhang } 2488f4c0e9e4SHong Zhang } 2489ca54ac64SHong Zhang } 2490f4c0e9e4SHong Zhang 24911ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2492ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 249324d5174aSHong Zhang PetscFunctionReturn(0); 249424d5174aSHong Zhang } 24952798e883SHong Zhang 24962798e883SHong Zhang #undef __FUNCT__ 24972798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24981302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24992798e883SHong Zhang { 25002798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2501dfbe8321SBarry Smith PetscErrorCode ierr; 2502899cda47SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap.bs; 2503efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2504ffe4fb16SHong Zhang Vec bb1; 2505ffe4fb16SHong Zhang 2506ffe4fb16SHong Zhang PetscFunctionBegin; 250777431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2508ffe4fb16SHong Zhang if (bs > 1) 2509ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2510ffe4fb16SHong Zhang 2511ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2512ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2513ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2514ffe4fb16SHong Zhang its--; 2515ffe4fb16SHong Zhang } 2516ffe4fb16SHong Zhang 2517ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2518ffe4fb16SHong Zhang while (its--){ 2519ffe4fb16SHong Zhang 2520ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2521ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2522ffe4fb16SHong Zhang 2523ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25241ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25251ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2526ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25271ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2528ffe4fb16SHong Zhang 2529efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2530ffe4fb16SHong Zhang 2531ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25321ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25331ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2534ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25351ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2536ffe4fb16SHong Zhang 2537ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25382dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2539ffe4fb16SHong Zhang 2540ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25411ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25421ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2543ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2544ffe4fb16SHong Zhang 2545ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2546ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2547ffe4fb16SHong Zhang 2548ffe4fb16SHong Zhang /* local diagonal sweep */ 2549ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2550ffe4fb16SHong Zhang } 2551ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2552ffe4fb16SHong Zhang } else { 2553ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2554ffe4fb16SHong Zhang } 2555ffe4fb16SHong Zhang PetscFunctionReturn(0); 2556ffe4fb16SHong Zhang } 2557ffe4fb16SHong Zhang 2558ffe4fb16SHong Zhang #undef __FUNCT__ 2559ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25601302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2561ffe4fb16SHong Zhang { 2562ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2563dfbe8321SBarry Smith PetscErrorCode ierr; 25642798e883SHong Zhang Vec lvec1,bb1; 25652798e883SHong Zhang 25662798e883SHong Zhang PetscFunctionBegin; 256777431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2568899cda47SBarry Smith if (matin->rmap.bs > 1) 25692798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25702798e883SHong Zhang 2571c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25722798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2573bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25742798e883SHong Zhang its--; 25752798e883SHong Zhang } 25762798e883SHong Zhang 25772798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25782798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25792798e883SHong Zhang while (its--){ 2580ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25812798e883SHong Zhang 25822798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25832798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2584efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25852798e883SHong Zhang 2586ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25872798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2588ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25892798e883SHong Zhang 25902798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2591efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25922798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25932798e883SHong Zhang 2594ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25952798e883SHong Zhang 2596c14dc6b6SHong Zhang /* diagonal sweep */ 2597bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25982798e883SHong Zhang } 25992798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26002798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2601c14dc6b6SHong Zhang } else { 2602c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2603c14dc6b6SHong Zhang } 26042798e883SHong Zhang PetscFunctionReturn(0); 26052798e883SHong Zhang } 26062798e883SHong Zhang 2607