1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 387087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 39a30f8f8cSSatish Balay { 40f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 41dfbe8321SBarry Smith PetscErrorCode ierr; 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay PetscFunctionBegin; 44a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 45a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 46a30f8f8cSSatish Balay PetscFunctionReturn(0); 47a30f8f8cSSatish Balay } 48a30f8f8cSSatish Balay 49a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 50a30f8f8cSSatish Balay { \ 51a30f8f8cSSatish Balay \ 52a30f8f8cSSatish Balay brow = row/bs; \ 53a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 54a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 55a30f8f8cSSatish Balay bcol = col/bs; \ 56a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 57a30f8f8cSSatish Balay low = 0; high = nrow; \ 58a30f8f8cSSatish Balay while (high-low > 3) { \ 59a30f8f8cSSatish Balay t = (low+high)/2; \ 60a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 61a30f8f8cSSatish Balay else low = t; \ 62a30f8f8cSSatish Balay } \ 63a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 64a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 65a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 66a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 67a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 68a30f8f8cSSatish Balay else *bap = value; \ 69a30f8f8cSSatish Balay goto a_noinsert; \ 70a30f8f8cSSatish Balay } \ 71a30f8f8cSSatish Balay } \ 72a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 73e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 74fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 75a30f8f8cSSatish Balay N = nrow++ - 1; \ 76a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 77a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 78a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 79a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 80a30f8f8cSSatish Balay } \ 81a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 82a30f8f8cSSatish Balay rp[_i] = bcol; \ 83a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 84a30f8f8cSSatish Balay a_noinsert:; \ 85a30f8f8cSSatish Balay ailen[brow] = nrow; \ 86a30f8f8cSSatish Balay } 87e5e170daSBarry Smith 88a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 89a30f8f8cSSatish Balay { \ 90a30f8f8cSSatish Balay brow = row/bs; \ 91a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 92a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 93a30f8f8cSSatish Balay bcol = col/bs; \ 94a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 95a30f8f8cSSatish Balay low = 0; high = nrow; \ 96a30f8f8cSSatish Balay while (high-low > 3) { \ 97a30f8f8cSSatish Balay t = (low+high)/2; \ 98a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 99a30f8f8cSSatish Balay else low = t; \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 102a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 103a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 104a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 105a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 106a30f8f8cSSatish Balay else *bap = value; \ 107a30f8f8cSSatish Balay goto b_noinsert; \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 111e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 112fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 113a30f8f8cSSatish Balay N = nrow++ - 1; \ 114a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 115a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 116a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 117a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 118a30f8f8cSSatish Balay } \ 119a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 120a30f8f8cSSatish Balay rp[_i] = bcol; \ 121a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 122a30f8f8cSSatish Balay b_noinsert:; \ 123a30f8f8cSSatish Balay bilen[brow] = nrow; \ 124a30f8f8cSSatish Balay } 125a30f8f8cSSatish Balay 126a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 127a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 128a30f8f8cSSatish Balay */ 1294a2ae208SSatish Balay #undef __FUNCT__ 130dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 131dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 132a30f8f8cSSatish Balay { 133a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 134a30f8f8cSSatish Balay MatScalar value; 135ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 136dfbe8321SBarry Smith PetscErrorCode ierr; 1371302d50aSBarry Smith PetscInt i,j,row,col; 138d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 139d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 140d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 141a30f8f8cSSatish Balay 142a30f8f8cSSatish Balay /* Some Variables required in the macro */ 143a30f8f8cSSatish Balay Mat A = baij->A; 144a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1451302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 146a30f8f8cSSatish Balay MatScalar *aa =a->a; 147a30f8f8cSSatish Balay 148a30f8f8cSSatish Balay Mat B = baij->B; 149a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1501302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 151a30f8f8cSSatish Balay MatScalar *ba =b->a; 152a30f8f8cSSatish Balay 1531302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1541302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 155a30f8f8cSSatish Balay MatScalar *ap,*bap; 156a30f8f8cSSatish Balay 157a30f8f8cSSatish Balay /* for stash */ 1580298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1590298fd71SBarry Smith MatScalar *v_loc = NULL; 160a30f8f8cSSatish Balay 161a30f8f8cSSatish Balay PetscFunctionBegin; 16271fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 163a30f8f8cSSatish Balay if (!baij->donotstash) { 16459ffdab8SBarry Smith if (n > baij->n_loc) { 16559ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 16659ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 16759ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 16859ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 16926fbe8dcSKarl Rupp 17059ffdab8SBarry Smith baij->n_loc = n; 17159ffdab8SBarry Smith } 17259ffdab8SBarry Smith in_loc = baij->in_loc; 17359ffdab8SBarry Smith v_loc = baij->v_loc; 174a30f8f8cSSatish Balay } 175a30f8f8cSSatish Balay 176a30f8f8cSSatish Balay for (i=0; i<m; i++) { 177a30f8f8cSSatish Balay if (im[i] < 0) continue; 1782515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 179e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 180a30f8f8cSSatish Balay #endif 181a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 182a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 183a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18401b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 18501b2bd88SHong Zhang if (a->ignore_ltriangular) { 18601b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 18726fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 18801b2bd88SHong Zhang } 189a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 190a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 191a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 192a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 193db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 194db4deed7SKarl Rupp else value = v[i+j*m]; 195a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 196a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 197a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1982515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 199cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 200a30f8f8cSSatish Balay #endif 201a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 202a30f8f8cSSatish Balay if (mat->was_assembled) { 203a30f8f8cSSatish Balay if (!baij->colmap) { 204ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 205a30f8f8cSSatish Balay } 206a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 207a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 20871730473SSatish Balay col = col - 1; 209a30f8f8cSSatish Balay #else 21071730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 211a30f8f8cSSatish Balay #endif 212a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 213ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 214a30f8f8cSSatish Balay col = in[j]; 215a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 216a30f8f8cSSatish Balay B = baij->B; 217a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 218a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 219a30f8f8cSSatish Balay ba = b->a; 22071730473SSatish Balay } else col += in[j]%bs; 221a30f8f8cSSatish Balay } else col = in[j]; 222db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 223db4deed7SKarl Rupp else value = v[i+j*m]; 224a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 225a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 226a30f8f8cSSatish Balay } 227a30f8f8cSSatish Balay } 228a30f8f8cSSatish Balay } else { /* off processor entry */ 2294cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 230a30f8f8cSSatish Balay if (!baij->donotstash) { 2315080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 232a30f8f8cSSatish Balay n_loc = 0; 233a30f8f8cSSatish Balay for (j=0; j<n; j++) { 234f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 235a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 236a30f8f8cSSatish Balay if (roworiented) { 237a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 238a30f8f8cSSatish Balay } else { 239a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 240a30f8f8cSSatish Balay } 241a30f8f8cSSatish Balay n_loc++; 242a30f8f8cSSatish Balay } 243b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay PetscFunctionReturn(0); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay 2504a2ae208SSatish Balay #undef __FUNCT__ 251dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 252dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 253a30f8f8cSSatish Balay { 2540880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 255f15d580aSBarry Smith const MatScalar *value; 256f15d580aSBarry Smith MatScalar *barray =baij->barray; 257ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 258dfbe8321SBarry Smith PetscErrorCode ierr; 259899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 260899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 261d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2620880e062SHong Zhang 263a30f8f8cSSatish Balay PetscFunctionBegin; 2640880e062SHong Zhang if (!barray) { 2650880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2660880e062SHong Zhang baij->barray = barray; 2670880e062SHong Zhang } 2680880e062SHong Zhang 2690880e062SHong Zhang if (roworiented) { 2700880e062SHong Zhang stepval = (n-1)*bs; 2710880e062SHong Zhang } else { 2720880e062SHong Zhang stepval = (m-1)*bs; 2730880e062SHong Zhang } 2740880e062SHong Zhang for (i=0; i<m; i++) { 2750880e062SHong Zhang if (im[i] < 0) continue; 2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 277e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2780880e062SHong Zhang #endif 2790880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2800880e062SHong Zhang row = im[i] - rstart; 2810880e062SHong Zhang for (j=0; j<n; j++) { 282f3f98c53SJed Brown if (im[i] > in[j]) { 283f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 284e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 285f3f98c53SJed Brown } 2860880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2870880e062SHong Zhang if ((roworiented) && (n == 1)) { 288f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2890880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 290f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2910880e062SHong Zhang } else { /* Here a copy is required */ 2920880e062SHong Zhang if (roworiented) { 2930880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2940880e062SHong Zhang } else { 2950880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2960880e062SHong Zhang } 2970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2980880e062SHong Zhang for (jj=0; jj<bs; jj++) { 2990880e062SHong Zhang *barray++ = *value++; 3000880e062SHong Zhang } 3010880e062SHong Zhang } 3020880e062SHong Zhang barray -=bs2; 3030880e062SHong Zhang } 3040880e062SHong Zhang 3050880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 3060880e062SHong Zhang col = in[j] - cstart; 3070880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 30826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3092515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 310cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3110880e062SHong Zhang #endif 3120880e062SHong Zhang else { 3130880e062SHong Zhang if (mat->was_assembled) { 3140880e062SHong Zhang if (!baij->colmap) { 315ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3160880e062SHong Zhang } 3170880e062SHong Zhang 3182515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3190880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3201302d50aSBarry Smith { PetscInt data; 3210880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 322e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3230880e062SHong Zhang } 3240880e062SHong Zhang #else 325e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3260880e062SHong Zhang #endif 3270880e062SHong Zhang #endif 3280880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3290880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3300880e062SHong Zhang col = (col - 1)/bs; 3310880e062SHong Zhang #else 3320880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3330880e062SHong Zhang #endif 3340880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 335ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3360880e062SHong Zhang col = in[j]; 3370880e062SHong Zhang } 33826fbe8dcSKarl Rupp } else col = in[j]; 339e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3400880e062SHong Zhang } 3410880e062SHong Zhang } 3420880e062SHong Zhang } else { 3434cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3440880e062SHong Zhang if (!baij->donotstash) { 3450880e062SHong Zhang if (roworiented) { 3460880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3470880e062SHong Zhang } else { 3480880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3490880e062SHong Zhang } 3500880e062SHong Zhang } 3510880e062SHong Zhang } 3520880e062SHong Zhang } 3530880e062SHong Zhang PetscFunctionReturn(0); 354a30f8f8cSSatish Balay } 355a30f8f8cSSatish Balay 3564a2ae208SSatish Balay #undef __FUNCT__ 3574a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3581302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 359a30f8f8cSSatish Balay { 360f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3616849ba73SBarry Smith PetscErrorCode ierr; 362d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 363d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 364a30f8f8cSSatish Balay 365a30f8f8cSSatish Balay PetscFunctionBegin; 366a30f8f8cSSatish Balay for (i=0; i<m; i++) { 367e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 368e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 369a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 370a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 371a30f8f8cSSatish Balay for (j=0; j<n; j++) { 372e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 373e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 374a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 375a30f8f8cSSatish Balay col = idxn[j] - bscstart; 376c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 377a30f8f8cSSatish Balay } else { 378a30f8f8cSSatish Balay if (!baij->colmap) { 379ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 382a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 383a30f8f8cSSatish Balay data--; 384a30f8f8cSSatish Balay #else 385a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 386a30f8f8cSSatish Balay #endif 387a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 388a30f8f8cSSatish Balay else { 389a30f8f8cSSatish Balay col = data + idxn[j]%bs; 390e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay } 393a30f8f8cSSatish Balay } 394f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay PetscFunctionReturn(0); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay 3994a2ae208SSatish Balay #undef __FUNCT__ 4004a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 401dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 402a30f8f8cSSatish Balay { 403a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 404dfbe8321SBarry Smith PetscErrorCode ierr; 405a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 406a30f8f8cSSatish Balay 407a30f8f8cSSatish Balay PetscFunctionBegin; 408a30f8f8cSSatish Balay if (baij->size == 1) { 409a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 410a30f8f8cSSatish Balay } else { 411a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 412f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 413a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 414a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 415a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 416a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 417ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4188f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 419a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4200b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4210b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4220b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4230b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 424899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 425d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4260b8dc8d2SHong Zhang MatScalar *v; 4270b8dc8d2SHong Zhang 42874ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 429d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4300b8dc8d2SHong Zhang /* Amat */ 4310b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4320b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4330b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4340b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4350b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4360b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4370b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4380b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4390b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4400b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4410b8dc8d2SHong Zhang /* non-diagonal block */ 4420b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4430b8dc8d2SHong Zhang } 4440b8dc8d2SHong Zhang } 4450b8dc8d2SHong Zhang } 4460b8dc8d2SHong Zhang } 4470b8dc8d2SHong Zhang /* Bmat */ 4480b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4490b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4500b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4510b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4520b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4530b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4540b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4550b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4560b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4570b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4580b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4590b8dc8d2SHong Zhang } 4600b8dc8d2SHong Zhang } 4610b8dc8d2SHong Zhang } 4620b8dc8d2SHong Zhang } 463ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4640b8dc8d2SHong Zhang *norm = 0.0; 465d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4660b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4670b8dc8d2SHong Zhang } 46874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 469f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 470a30f8f8cSSatish Balay } 471a30f8f8cSSatish Balay PetscFunctionReturn(0); 472a30f8f8cSSatish Balay } 473a30f8f8cSSatish Balay 4744a2ae208SSatish Balay #undef __FUNCT__ 4754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 476dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 477a30f8f8cSSatish Balay { 478a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 479dfbe8321SBarry Smith PetscErrorCode ierr; 4801302d50aSBarry Smith PetscInt nstash,reallocs; 481a30f8f8cSSatish Balay InsertMode addv; 482a30f8f8cSSatish Balay 483a30f8f8cSSatish Balay PetscFunctionBegin; 48426fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 485a30f8f8cSSatish Balay 486a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 487ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 488ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 489a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 490a30f8f8cSSatish Balay 491d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4921e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 493a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4941e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 495a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4961e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 497a30f8f8cSSatish Balay PetscFunctionReturn(0); 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay 5004a2ae208SSatish Balay #undef __FUNCT__ 5014a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 502dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 503a30f8f8cSSatish Balay { 504a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 505a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 5066849ba73SBarry Smith PetscErrorCode ierr; 50713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 508e44c0bd4SBarry Smith PetscInt *row,*col; 509ace3abfcSBarry Smith PetscBool other_disassembled; 51013f74950SBarry Smith PetscMPIInt n; 511ace3abfcSBarry Smith PetscBool r1,r2,r3; 512a30f8f8cSSatish Balay MatScalar *val; 513a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 514a30f8f8cSSatish Balay 51591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 516a30f8f8cSSatish Balay PetscFunctionBegin; 5174cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 518a30f8f8cSSatish Balay while (1) { 519a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 520a30f8f8cSSatish Balay if (!flg) break; 521a30f8f8cSSatish Balay 522a30f8f8cSSatish Balay for (i=0; i<n;) { 523a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 52426fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 52526fbe8dcSKarl Rupp if (row[j] != rstart) break; 52626fbe8dcSKarl Rupp } 527a30f8f8cSSatish Balay if (j < n) ncols = j-i; 528a30f8f8cSSatish Balay else ncols = n-i; 529a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 530dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 531a30f8f8cSSatish Balay i = j; 532a30f8f8cSSatish Balay } 533a30f8f8cSSatish Balay } 534a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 535a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 536a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 537a30f8f8cSSatish Balay restore the original flags */ 538a30f8f8cSSatish Balay r1 = baij->roworiented; 539a30f8f8cSSatish Balay r2 = a->roworiented; 54091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 54126fbe8dcSKarl Rupp 542a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 543a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 54426fbe8dcSKarl Rupp 54591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 546a30f8f8cSSatish Balay while (1) { 547a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 548a30f8f8cSSatish Balay if (!flg) break; 549a30f8f8cSSatish Balay 550a30f8f8cSSatish Balay for (i=0; i<n;) { 551a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 55226fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 55326fbe8dcSKarl Rupp if (row[j] != rstart) break; 55426fbe8dcSKarl Rupp } 555a30f8f8cSSatish Balay if (j < n) ncols = j-i; 556a30f8f8cSSatish Balay else ncols = n-i; 557dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 558a30f8f8cSSatish Balay i = j; 559a30f8f8cSSatish Balay } 560a30f8f8cSSatish Balay } 561a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 56226fbe8dcSKarl Rupp 563a30f8f8cSSatish Balay baij->roworiented = r1; 564a30f8f8cSSatish Balay a->roworiented = r2; 56526fbe8dcSKarl Rupp 56691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay 569a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 570a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 571a30f8f8cSSatish Balay 572a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 573a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 574a30f8f8cSSatish Balay /* 575a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 576a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 577a30f8f8cSSatish Balay */ 578a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 579ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 580a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 581ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay 585a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58640781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 587a30f8f8cSSatish Balay } 588cd6b891eSBarry Smith ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr); 589a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 590a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 591a30f8f8cSSatish Balay 59274ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 59326fbe8dcSKarl Rupp 594a30f8f8cSSatish Balay baij->rowvalues = 0; 595a30f8f8cSSatish Balay PetscFunctionReturn(0); 596a30f8f8cSSatish Balay } 597a30f8f8cSSatish Balay 598dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 5999804daf3SBarry Smith #include <petscdraw.h> 6004a2ae208SSatish Balay #undef __FUNCT__ 6014a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6026849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 603a30f8f8cSSatish Balay { 604a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 605dfbe8321SBarry Smith PetscErrorCode ierr; 606d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6071302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 608ace3abfcSBarry Smith PetscBool iascii,isdraw; 609b0a32e0cSBarry Smith PetscViewer sviewer; 610f3ef73ceSBarry Smith PetscViewerFormat format; 611a30f8f8cSSatish Balay 612a30f8f8cSSatish Balay PetscFunctionBegin; 613251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 614251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 61532077d6dSBarry Smith if (iascii) { 616b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 617456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 618a30f8f8cSSatish Balay MatInfo info; 619ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 620a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6217b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6227b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 623a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 624e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 625a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 626e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 627b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6287b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 62907d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 631a30f8f8cSSatish Balay PetscFunctionReturn(0); 632fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 634a30f8f8cSSatish Balay PetscFunctionReturn(0); 635c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 636c1490034SHong Zhang PetscFunctionReturn(0); 637a30f8f8cSSatish Balay } 638a30f8f8cSSatish Balay } 639a30f8f8cSSatish Balay 640a30f8f8cSSatish Balay if (isdraw) { 641b0a32e0cSBarry Smith PetscDraw draw; 642ace3abfcSBarry Smith PetscBool isnull; 643b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 644b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay 647a30f8f8cSSatish Balay if (size == 1) { 6487adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 649a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 650a30f8f8cSSatish Balay } else { 651a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 652a30f8f8cSSatish Balay Mat A; 65365d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65465d70643SHong Zhang Mat_SeqBAIJ *Bloc; 655d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 656a30f8f8cSSatish Balay MatScalar *a; 657a30f8f8cSSatish Balay 658f204ca49SKris Buschelman /* Should this be the same type as mat? */ 659ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 660a30f8f8cSSatish Balay if (!rank) { 661f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 662a30f8f8cSSatish Balay } else { 663f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 664a30f8f8cSSatish Balay } 665f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6660298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6672b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 66852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 669a30f8f8cSSatish Balay 670a30f8f8cSSatish Balay /* copy over the A part */ 67165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 672a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6731302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 676e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 67726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 678a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 679e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 680a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 681dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 68226fbe8dcSKarl Rupp col++; 68326fbe8dcSKarl Rupp a += bs; 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay /* copy over the B part */ 68865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 68965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 690a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 691e9f7bc9eSHong Zhang 692e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 69326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 694a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 695a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 696a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 697799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 69826fbe8dcSKarl Rupp col++; 69926fbe8dcSKarl Rupp a += bs; 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 704a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 705a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 706a30f8f8cSSatish Balay /* 707a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 708b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 709a30f8f8cSSatish Balay */ 710b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71165d70643SHong Zhang if (!rank) { 7127adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7137566de4bSShri Abhyankar /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/ 7147566de4bSShri Abhyankar PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ); 715a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 716a30f8f8cSSatish Balay } 717b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7186bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 719a30f8f8cSSatish Balay } 720a30f8f8cSSatish Balay PetscFunctionReturn(0); 721a30f8f8cSSatish Balay } 722a30f8f8cSSatish Balay 7234a2ae208SSatish Balay #undef __FUNCT__ 7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 725dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 726a30f8f8cSSatish Balay { 727dfbe8321SBarry Smith PetscErrorCode ierr; 728ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay PetscFunctionBegin; 731251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 732251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 733251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 734251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73532077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 736a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 737a30f8f8cSSatish Balay } 738a30f8f8cSSatish Balay PetscFunctionReturn(0); 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay 7414a2ae208SSatish Balay #undef __FUNCT__ 7424a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 743dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 744a30f8f8cSSatish Balay { 745a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 746dfbe8321SBarry Smith PetscErrorCode ierr; 747a30f8f8cSSatish Balay 748a30f8f8cSSatish Balay PetscFunctionBegin; 749a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 750d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 751a30f8f8cSSatish Balay #endif 752a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7546bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7556bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 756a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7576bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 758a30f8f8cSSatish Balay #else 75905b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 760a30f8f8cSSatish Balay #endif 76105b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7626bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7636bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7646bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7656bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7666bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7676bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7686bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7705755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77105b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77205b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7736bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7746bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7756bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 776ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 77705b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 778a30f8f8cSSatish Balay #endif 77959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 781899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 782bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 783901853e0SKris Buschelman 784dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 7850298fd71SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",NULL);CHKERRQ(ierr); 7860298fd71SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",NULL);CHKERRQ(ierr); 7870298fd71SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",NULL);CHKERRQ(ierr); 7880298fd71SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",NULL);CHKERRQ(ierr); 7890298fd71SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C","",NULL);CHKERRQ(ierr); 790a30f8f8cSSatish Balay PetscFunctionReturn(0); 791a30f8f8cSSatish Balay } 792a30f8f8cSSatish Balay 7934a2ae208SSatish Balay #undef __FUNCT__ 794547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 795547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 796547795f9SHong Zhang { 797547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 798547795f9SHong Zhang PetscErrorCode ierr; 799547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 800547795f9SHong Zhang PetscScalar *x,*from; 801547795f9SHong Zhang 802547795f9SHong Zhang PetscFunctionBegin; 803547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 804e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 805547795f9SHong Zhang 806547795f9SHong Zhang /* diagonal part */ 807547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 808547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 809547795f9SHong Zhang 810547795f9SHong Zhang /* subdiagonal part */ 811547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 812547795f9SHong Zhang 813547795f9SHong Zhang /* copy x into the vec slvec0 */ 814547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 815547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 816547795f9SHong Zhang 817547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 818547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 819547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 820547795f9SHong Zhang 821547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 823547795f9SHong Zhang /* supperdiagonal part */ 824547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 825547795f9SHong Zhang PetscFunctionReturn(0); 826547795f9SHong Zhang } 827547795f9SHong Zhang 828547795f9SHong Zhang #undef __FUNCT__ 829a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 830dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 831a9d4b620SHong Zhang { 832a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 833dfbe8321SBarry Smith PetscErrorCode ierr; 834d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 835fa22f6d0SBarry Smith PetscScalar *x,*from; 836a9d4b620SHong Zhang 837a9d4b620SHong Zhang PetscFunctionBegin; 838a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 839e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 840a9d4b620SHong Zhang 841a9d4b620SHong Zhang /* diagonal part */ 842a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 843fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 844a9d4b620SHong Zhang 845a9d4b620SHong Zhang /* subdiagonal part */ 846a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 847fc165ae2SBarry Smith 848a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8491ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8501ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 851a9d4b620SHong Zhang 852fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 853fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8541ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 855fc165ae2SBarry Smith 856fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 857ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 858a9d4b620SHong Zhang /* supperdiagonal part */ 859a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 860a9d4b620SHong Zhang PetscFunctionReturn(0); 861a9d4b620SHong Zhang } 862a9d4b620SHong Zhang 863a9d4b620SHong Zhang #undef __FUNCT__ 86440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 865dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 866a30f8f8cSSatish Balay { 867a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 868dfbe8321SBarry Smith PetscErrorCode ierr; 8691302d50aSBarry Smith PetscInt nt; 870a30f8f8cSSatish Balay 871a30f8f8cSSatish Balay PetscFunctionBegin; 872a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 873e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 874e7e72b3dSBarry Smith 875a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 876e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 87765d70643SHong Zhang 878ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 879b941877fSHong Zhang /* do diagonal part */ 880b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 881b941877fSHong Zhang /* do supperdiagonal part */ 882ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 883b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 884b941877fSHong Zhang /* do subdiagonal part */ 885b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 886ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 887ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 888a30f8f8cSSatish Balay PetscFunctionReturn(0); 889a30f8f8cSSatish Balay } 890a30f8f8cSSatish Balay 8914a2ae208SSatish Balay #undef __FUNCT__ 8924a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 893dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 894a30f8f8cSSatish Balay { 895de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 896dfbe8321SBarry Smith PetscErrorCode ierr; 897d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 898a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 899a9d4b620SHong Zhang 900a9d4b620SHong Zhang PetscFunctionBegin; 901a9d4b620SHong Zhang /* 902ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 903ce94432eSBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A)); 904a9d4b620SHong Zhang */ 905a9d4b620SHong Zhang /* diagonal part */ 906a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9072dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 908a9d4b620SHong Zhang 909a9d4b620SHong Zhang /* subdiagonal part */ 910a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 911a9d4b620SHong Zhang 912a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9131ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9141ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 915a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9161ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 917a9d4b620SHong Zhang 918ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9191ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 920ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 921a9d4b620SHong Zhang 922a9d4b620SHong Zhang /* supperdiagonal part */ 923a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 924a9d4b620SHong Zhang PetscFunctionReturn(0); 925a9d4b620SHong Zhang } 926a9d4b620SHong Zhang 927a9d4b620SHong Zhang #undef __FUNCT__ 928a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 929dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 930a9d4b620SHong Zhang { 931a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 932dfbe8321SBarry Smith PetscErrorCode ierr; 933a30f8f8cSSatish Balay 934a30f8f8cSSatish Balay PetscFunctionBegin; 935ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 936b941877fSHong Zhang /* do diagonal part */ 937b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 938b941877fSHong Zhang /* do supperdiagonal part */ 939ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 940de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 941de8b6608SHong Zhang 942b941877fSHong Zhang /* do subdiagonal part */ 943a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 944ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 945ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 946a30f8f8cSSatish Balay PetscFunctionReturn(0); 947a30f8f8cSSatish Balay } 948a30f8f8cSSatish Balay 949a30f8f8cSSatish Balay /* 950a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 951a30f8f8cSSatish Balay diagonal block 952a30f8f8cSSatish Balay */ 9534a2ae208SSatish Balay #undef __FUNCT__ 9544a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 955dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 956a30f8f8cSSatish Balay { 957a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 958dfbe8321SBarry Smith PetscErrorCode ierr; 959a30f8f8cSSatish Balay 960a30f8f8cSSatish Balay PetscFunctionBegin; 961e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 962a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 963a30f8f8cSSatish Balay PetscFunctionReturn(0); 964a30f8f8cSSatish Balay } 965a30f8f8cSSatish Balay 9664a2ae208SSatish Balay #undef __FUNCT__ 9674a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 968f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 969a30f8f8cSSatish Balay { 970a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 971dfbe8321SBarry Smith PetscErrorCode ierr; 972a30f8f8cSSatish Balay 973a30f8f8cSSatish Balay PetscFunctionBegin; 974f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 975f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 976a30f8f8cSSatish Balay PetscFunctionReturn(0); 977a30f8f8cSSatish Balay } 978a30f8f8cSSatish Balay 9794a2ae208SSatish Balay #undef __FUNCT__ 9804a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9811302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 982a30f8f8cSSatish Balay { 983d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 984d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 985d0d4cfc2SHong Zhang PetscErrorCode ierr; 986d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 987d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 988899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 989d0d4cfc2SHong Zhang 990a30f8f8cSSatish Balay PetscFunctionBegin; 991e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 992d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 993d0d4cfc2SHong Zhang 994d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 995d0d4cfc2SHong Zhang /* 996d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 997d0d4cfc2SHong Zhang */ 998d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 999d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1000d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1001d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1002d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 100326fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1004d0d4cfc2SHong Zhang } 100574ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1006d0d4cfc2SHong Zhang } 1007d0d4cfc2SHong Zhang 1008e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1009d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1010d0d4cfc2SHong Zhang 1011d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1012d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1013d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1014d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1015d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1016d0d4cfc2SHong Zhang nztot = nzA + nzB; 1017d0d4cfc2SHong Zhang 1018d0d4cfc2SHong Zhang cmap = mat->garray; 1019d0d4cfc2SHong Zhang if (v || idx) { 1020d0d4cfc2SHong Zhang if (nztot) { 1021d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1022d0d4cfc2SHong Zhang PetscInt imark = -1; 1023d0d4cfc2SHong Zhang if (v) { 1024d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1025d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1026d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1027d0d4cfc2SHong Zhang else break; 1028d0d4cfc2SHong Zhang } 1029d0d4cfc2SHong Zhang imark = i; 1030d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1031d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1032d0d4cfc2SHong Zhang } 1033d0d4cfc2SHong Zhang if (idx) { 1034d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1035d0d4cfc2SHong Zhang if (imark > -1) { 1036d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1037d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1038d0d4cfc2SHong Zhang } 1039d0d4cfc2SHong Zhang } else { 1040d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 104126fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1042d0d4cfc2SHong Zhang else break; 1043d0d4cfc2SHong Zhang } 1044d0d4cfc2SHong Zhang imark = i; 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1047d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1048d0d4cfc2SHong Zhang } 1049d0d4cfc2SHong Zhang } else { 1050d0d4cfc2SHong Zhang if (idx) *idx = 0; 1051d0d4cfc2SHong Zhang if (v) *v = 0; 1052d0d4cfc2SHong Zhang } 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang *nz = nztot; 1055d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1056d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1057a30f8f8cSSatish Balay PetscFunctionReturn(0); 1058a30f8f8cSSatish Balay } 1059a30f8f8cSSatish Balay 10604a2ae208SSatish Balay #undef __FUNCT__ 10614a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10621302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1063a30f8f8cSSatish Balay { 1064a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1065a30f8f8cSSatish Balay 1066a30f8f8cSSatish Balay PetscFunctionBegin; 1067e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1068a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1069a30f8f8cSSatish Balay PetscFunctionReturn(0); 1070a30f8f8cSSatish Balay } 1071a30f8f8cSSatish Balay 10724a2ae208SSatish Balay #undef __FUNCT__ 1073d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1074d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1075d0d4cfc2SHong Zhang { 1076d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1077d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1078d0d4cfc2SHong Zhang 1079d0d4cfc2SHong Zhang PetscFunctionBegin; 1080d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1081d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1082d0d4cfc2SHong Zhang } 1083d0d4cfc2SHong Zhang #undef __FUNCT__ 1084d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1085d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1086d0d4cfc2SHong Zhang { 1087d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1088d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1089d0d4cfc2SHong Zhang 1090d0d4cfc2SHong Zhang PetscFunctionBegin; 1091d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1092d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1093d0d4cfc2SHong Zhang } 1094d0d4cfc2SHong Zhang 1095d0d4cfc2SHong Zhang #undef __FUNCT__ 109699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 109799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 109899cafbc1SBarry Smith { 109999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110099cafbc1SBarry Smith PetscErrorCode ierr; 110199cafbc1SBarry Smith 110299cafbc1SBarry Smith PetscFunctionBegin; 110399cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 110499cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 110599cafbc1SBarry Smith PetscFunctionReturn(0); 110699cafbc1SBarry Smith } 110799cafbc1SBarry Smith 110899cafbc1SBarry Smith #undef __FUNCT__ 110999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111199cafbc1SBarry Smith { 111299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111399cafbc1SBarry Smith PetscErrorCode ierr; 111499cafbc1SBarry Smith 111599cafbc1SBarry Smith PetscFunctionBegin; 111699cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 111799cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 111899cafbc1SBarry Smith PetscFunctionReturn(0); 111999cafbc1SBarry Smith } 112099cafbc1SBarry Smith 112199cafbc1SBarry Smith #undef __FUNCT__ 11224a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1123dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1124a30f8f8cSSatish Balay { 1125a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1126dfbe8321SBarry Smith PetscErrorCode ierr; 1127a30f8f8cSSatish Balay 1128a30f8f8cSSatish Balay PetscFunctionBegin; 1129a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1130a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1131a30f8f8cSSatish Balay PetscFunctionReturn(0); 1132a30f8f8cSSatish Balay } 1133a30f8f8cSSatish Balay 11344a2ae208SSatish Balay #undef __FUNCT__ 11354a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1136dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1137a30f8f8cSSatish Balay { 1138a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1139a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1140dfbe8321SBarry Smith PetscErrorCode ierr; 1141a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1142a30f8f8cSSatish Balay 1143a30f8f8cSSatish Balay PetscFunctionBegin; 1144d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 114526fbe8dcSKarl Rupp 1146a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 114726fbe8dcSKarl Rupp 1148a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1149a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 115026fbe8dcSKarl Rupp 1151a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 115226fbe8dcSKarl Rupp 1153a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1154a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1155a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1156a30f8f8cSSatish Balay info->nz_used = isend[0]; 1157a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1158a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1159a30f8f8cSSatish Balay info->memory = isend[3]; 1160a30f8f8cSSatish Balay info->mallocs = isend[4]; 1161a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1162ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 116326fbe8dcSKarl Rupp 1164a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1165a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1166a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1167a30f8f8cSSatish Balay info->memory = irecv[3]; 1168a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1169a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1170ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 117126fbe8dcSKarl Rupp 1172a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1173a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1174a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1175a30f8f8cSSatish Balay info->memory = irecv[3]; 1176a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1177f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1178a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1179a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1180a30f8f8cSSatish Balay info->factor_mallocs = 0; 1181a30f8f8cSSatish Balay PetscFunctionReturn(0); 1182a30f8f8cSSatish Balay } 1183a30f8f8cSSatish Balay 11844a2ae208SSatish Balay #undef __FUNCT__ 11854a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1186ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1187a30f8f8cSSatish Balay { 1188a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1189d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1190dfbe8321SBarry Smith PetscErrorCode ierr; 1191a30f8f8cSSatish Balay 1192a30f8f8cSSatish Balay PetscFunctionBegin; 1193e98b92d7SKris Buschelman switch (op) { 1194512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1195e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 119628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1197a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1198e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 11994e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12004e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1201e98b92d7SKris Buschelman break; 1202e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12034e0d8c25SBarry Smith a->roworiented = flg; 120426fbe8dcSKarl Rupp 12054e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12064e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1207e98b92d7SKris Buschelman break; 12084e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1209290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1210e98b92d7SKris Buschelman break; 1211e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12124e0d8c25SBarry Smith a->donotstash = flg; 1213e98b92d7SKris Buschelman break; 1214e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12154e0d8c25SBarry Smith a->ht_flag = flg; 1216e98b92d7SKris Buschelman break; 12179a4540c5SBarry Smith case MAT_HERMITIAN: 1218e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1219eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 122026fbe8dcSKarl Rupp 1221547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1222eeffb40dSHong Zhang break; 1223ffa07934SHong Zhang case MAT_SPD: 1224ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1225ffa07934SHong Zhang A->spd = flg; 1226ffa07934SHong Zhang if (flg) { 1227ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1228ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1229ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1230ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1231ffa07934SHong Zhang } 1232ffa07934SHong Zhang break; 123377e54ba9SKris Buschelman case MAT_SYMMETRIC: 1234eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1235eeffb40dSHong Zhang break; 123677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1237eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1238eeffb40dSHong Zhang break; 12399a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1240e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1241290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124277e54ba9SKris Buschelman break; 1243d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12444e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1245d0d4cfc2SHong Zhang break; 1246d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12474e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1248d0d4cfc2SHong Zhang break; 1249d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12504e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1251d0d4cfc2SHong Zhang break; 1252e98b92d7SKris Buschelman default: 1253e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1254a30f8f8cSSatish Balay } 1255a30f8f8cSSatish Balay PetscFunctionReturn(0); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay 12584a2ae208SSatish Balay #undef __FUNCT__ 12598115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1260fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1261a30f8f8cSSatish Balay { 1262dfbe8321SBarry Smith PetscErrorCode ierr; 12636e111a19SKarl Rupp 1264a30f8f8cSSatish Balay PetscFunctionBegin; 1265815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1266999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1267fc4dec0aSBarry Smith } 12688115998fSBarry Smith PetscFunctionReturn(0); 1269a30f8f8cSSatish Balay } 1270a30f8f8cSSatish Balay 12714a2ae208SSatish Balay #undef __FUNCT__ 12724a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1273dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1274a30f8f8cSSatish Balay { 1275a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1276a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1277dfbe8321SBarry Smith PetscErrorCode ierr; 12785e90f9d9SHong Zhang PetscInt nv,m,n; 1279ace3abfcSBarry Smith PetscBool flg; 1280a30f8f8cSSatish Balay 1281a30f8f8cSSatish Balay PetscFunctionBegin; 1282a30f8f8cSSatish Balay if (ll != rr) { 1283b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1284e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1285a30f8f8cSSatish Balay } 1286b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1287b3bf805bSHong Zhang 12885e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1289e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1290b3bf805bSHong Zhang 12915e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1292e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12935e90f9d9SHong Zhang 1294ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12955e90f9d9SHong Zhang 12965e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 12970298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 12985e90f9d9SHong Zhang 12995e90f9d9SHong Zhang /* scale the diagonal part */ 1300a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1301a30f8f8cSSatish Balay 13025e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1303ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13040298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay PetscFunctionReturn(0); 1306a30f8f8cSSatish Balay } 1307a30f8f8cSSatish Balay 13084a2ae208SSatish Balay #undef __FUNCT__ 13094a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1310dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1311a30f8f8cSSatish Balay { 1312f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1313dfbe8321SBarry Smith PetscErrorCode ierr; 1314a30f8f8cSSatish Balay 1315a30f8f8cSSatish Balay PetscFunctionBegin; 1316a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1317a30f8f8cSSatish Balay PetscFunctionReturn(0); 1318a30f8f8cSSatish Balay } 1319a30f8f8cSSatish Balay 13206849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1321a30f8f8cSSatish Balay 13224a2ae208SSatish Balay #undef __FUNCT__ 13234a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1324ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1325a30f8f8cSSatish Balay { 1326a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1327a30f8f8cSSatish Balay Mat a,b,c,d; 1328ace3abfcSBarry Smith PetscBool flg; 1329dfbe8321SBarry Smith PetscErrorCode ierr; 1330a30f8f8cSSatish Balay 1331a30f8f8cSSatish Balay PetscFunctionBegin; 1332a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1333a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1334a30f8f8cSSatish Balay 1335a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1336abc0a331SBarry Smith if (flg) { 1337a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1338a30f8f8cSSatish Balay } 1339ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1340a30f8f8cSSatish Balay PetscFunctionReturn(0); 1341a30f8f8cSSatish Balay } 1342a30f8f8cSSatish Balay 13434a2ae208SSatish Balay #undef __FUNCT__ 13443c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13453c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13463c896bc6SHong Zhang { 13473c896bc6SHong Zhang PetscErrorCode ierr; 13483c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 13493c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 13503c896bc6SHong Zhang 13513c896bc6SHong Zhang PetscFunctionBegin; 13523c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13533c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1354d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13553c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1356d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13573c896bc6SHong Zhang } else { 13583c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13593c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13603c896bc6SHong Zhang } 13613c896bc6SHong Zhang PetscFunctionReturn(0); 13623c896bc6SHong Zhang } 13633c896bc6SHong Zhang 13643c896bc6SHong Zhang #undef __FUNCT__ 13654994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 13664994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1367273d9f13SBarry Smith { 1368dfbe8321SBarry Smith PetscErrorCode ierr; 1369273d9f13SBarry Smith 1370273d9f13SBarry Smith PetscFunctionBegin; 1371535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1372273d9f13SBarry Smith PetscFunctionReturn(0); 1373273d9f13SBarry Smith } 1374a5e6ed63SBarry Smith 13754fe895cdSHong Zhang #undef __FUNCT__ 13764fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13774fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13784fe895cdSHong Zhang { 13794fe895cdSHong Zhang PetscErrorCode ierr; 13804fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 13814fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13824fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13834fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13844fe895cdSHong Zhang 13854fe895cdSHong Zhang PetscFunctionBegin; 13864fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13874fe895cdSHong Zhang PetscScalar alpha = a; 13884fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 13894fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1390c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 1391a83cb05cSBarry Smith PetscStackCall("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 13924fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 13934fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1394c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 1395a83cb05cSBarry Smith PetscStackCall("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 13964fe895cdSHong Zhang } else { 1397d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13984fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1399d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14004fe895cdSHong Zhang } 14014fe895cdSHong Zhang PetscFunctionReturn(0); 14024fe895cdSHong Zhang } 14034fe895cdSHong Zhang 1404a5e6ed63SBarry Smith #undef __FUNCT__ 1405a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14061302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1407a5e6ed63SBarry Smith { 14086849ba73SBarry Smith PetscErrorCode ierr; 14091302d50aSBarry Smith PetscInt i; 1410ace3abfcSBarry Smith PetscBool flg; 1411a5e6ed63SBarry Smith 14126849ba73SBarry Smith PetscFunctionBegin; 1413a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1414a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1415e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1416a5e6ed63SBarry Smith } 1417a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1418a5e6ed63SBarry Smith PetscFunctionReturn(0); 1419a5e6ed63SBarry Smith } 1420a5e6ed63SBarry Smith 1421a5e6ed63SBarry Smith 1422a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1423*3964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1424a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1425a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1426a9d4b620SHong Zhang MatMult_MPISBAIJ, 142797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1428431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1429431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1430a30f8f8cSSatish Balay 0, 1431a30f8f8cSSatish Balay 0, 1432a30f8f8cSSatish Balay 0, 143397304618SKris Buschelman /* 10*/ 0, 1434a30f8f8cSSatish Balay 0, 1435a30f8f8cSSatish Balay 0, 143641f059aeSBarry Smith MatSOR_MPISBAIJ, 1437a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 143897304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1439a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1440a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1441a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1442a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 144397304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1444a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1445a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1446a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1447d519adbfSMatthew Knepley /* 24*/ 0, 1448a30f8f8cSSatish Balay 0, 1449a30f8f8cSSatish Balay 0, 1450a30f8f8cSSatish Balay 0, 1451a30f8f8cSSatish Balay 0, 14524994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1453b5df2d14SHong Zhang 0, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 1456a30f8f8cSSatish Balay 0, 1457d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 1462d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1463a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1464d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1465a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14663c896bc6SHong Zhang MatCopy_MPISBAIJ, 1467d519adbfSMatthew Knepley /* 44*/ 0, 1468a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 1472f73d5cc4SBarry Smith /* 49*/ 0, 1473a30f8f8cSSatish Balay 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477d519adbfSMatthew Knepley /* 54*/ 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1482d519adbfSMatthew Knepley /* 59*/ 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485357abbc8SBarry Smith 0, 148624d5174aSHong Zhang 0, 1487d519adbfSMatthew Knepley /* 64*/ 0, 148824d5174aSHong Zhang 0, 148924d5174aSHong Zhang 0, 149024d5174aSHong Zhang 0, 149124d5174aSHong Zhang 0, 1492d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 149324d5174aSHong Zhang 0, 149497304618SKris Buschelman 0, 149597304618SKris Buschelman 0, 149697304618SKris Buschelman 0, 1497d519adbfSMatthew Knepley /* 74*/ 0, 149897304618SKris Buschelman 0, 149997304618SKris Buschelman 0, 150097304618SKris Buschelman 0, 150197304618SKris Buschelman 0, 1502d519adbfSMatthew Knepley /* 79*/ 0, 150397304618SKris Buschelman 0, 150497304618SKris Buschelman 0, 150597304618SKris Buschelman 0, 15065bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1507d519adbfSMatthew Knepley /* 84*/ 0, 1508865e5f61SKris Buschelman 0, 1509865e5f61SKris Buschelman 0, 1510865e5f61SKris Buschelman 0, 1511865e5f61SKris Buschelman 0, 1512d519adbfSMatthew Knepley /* 89*/ 0, 1513865e5f61SKris Buschelman 0, 1514865e5f61SKris Buschelman 0, 1515865e5f61SKris Buschelman 0, 1516865e5f61SKris Buschelman 0, 1517d519adbfSMatthew Knepley /* 94*/ 0, 1518865e5f61SKris Buschelman 0, 1519865e5f61SKris Buschelman 0, 152099cafbc1SBarry Smith 0, 152199cafbc1SBarry Smith 0, 1522d519adbfSMatthew Knepley /* 99*/ 0, 152399cafbc1SBarry Smith 0, 152499cafbc1SBarry Smith 0, 152599cafbc1SBarry Smith 0, 152699cafbc1SBarry Smith 0, 1527d519adbfSMatthew Knepley /*104*/ 0, 152899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1529d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1530d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 153195936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 153295936485SShri Abhyankar /*109*/ 0, 153395936485SShri Abhyankar 0, 153495936485SShri Abhyankar 0, 153595936485SShri Abhyankar 0, 153695936485SShri Abhyankar 0, 153795936485SShri Abhyankar /*114*/ 0, 153895936485SShri Abhyankar 0, 153995936485SShri Abhyankar 0, 154095936485SShri Abhyankar 0, 154195936485SShri Abhyankar 0, 154295936485SShri Abhyankar /*119*/ 0, 154395936485SShri Abhyankar 0, 154495936485SShri Abhyankar 0, 1545*3964eb88SJed Brown 0, 1546*3964eb88SJed Brown 0, 1547*3964eb88SJed Brown /*124*/ 0, 1548*3964eb88SJed Brown 0, 1549*3964eb88SJed Brown 0, 1550*3964eb88SJed Brown 0, 1551*3964eb88SJed Brown 0, 1552*3964eb88SJed Brown /*129*/ 0, 1553*3964eb88SJed Brown 0, 1554*3964eb88SJed Brown 0, 1555*3964eb88SJed Brown 0, 1556*3964eb88SJed Brown 0, 1557*3964eb88SJed Brown /*134*/ 0, 1558*3964eb88SJed Brown 0, 1559*3964eb88SJed Brown 0, 1560*3964eb88SJed Brown 0, 1561*3964eb88SJed Brown 0, 1562*3964eb88SJed Brown /*139*/ 0, 15635bba2384SShri Abhyankar 0 156499cafbc1SBarry Smith }; 1565a30f8f8cSSatish Balay 1566a30f8f8cSSatish Balay 15674a2ae208SSatish Balay #undef __FUNCT__ 15684a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 156911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1570a30f8f8cSSatish Balay { 1571a30f8f8cSSatish Balay PetscFunctionBegin; 1572a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1573a30f8f8cSSatish Balay PetscFunctionReturn(0); 1574a30f8f8cSSatish Balay } 1575a30f8f8cSSatish Balay 15764a2ae208SSatish Balay #undef __FUNCT__ 1577a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1578b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1579a23d5eceSKris Buschelman { 1580a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1581dfbe8321SBarry Smith PetscErrorCode ierr; 1582535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1583a23d5eceSKris Buschelman 1584a23d5eceSKris Buschelman PetscFunctionBegin; 1585a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1586a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1587e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1588e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1589899cda47SBarry Smith 1590535b19f3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1591535b19f3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 159226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 159326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1594e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1595899cda47SBarry Smith 1596a23d5eceSKris Buschelman if (d_nnz) { 1597d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1598e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1599a23d5eceSKris Buschelman } 1600a23d5eceSKris Buschelman } 1601a23d5eceSKris Buschelman if (o_nnz) { 1602d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1603e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1604a23d5eceSKris Buschelman } 1605a23d5eceSKris Buschelman } 1606a23d5eceSKris Buschelman 1607a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1608d0f46423SBarry Smith mbs = B->rmap->n/bs; 1609d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1610c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1611a23d5eceSKris Buschelman 1612d0f46423SBarry Smith B->rmap->bs = bs; 1613a23d5eceSKris Buschelman b->bs2 = bs*bs; 1614a23d5eceSKris Buschelman b->mbs = mbs; 1615a23d5eceSKris Buschelman b->nbs = mbs; 1616a23d5eceSKris Buschelman b->Mbs = Mbs; 1617a23d5eceSKris Buschelman b->Nbs = Mbs; 1618a23d5eceSKris Buschelman 1619a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1620d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1621a23d5eceSKris Buschelman } 1622d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1623d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1624a23d5eceSKris Buschelman 1625d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1626d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1627a23d5eceSKris Buschelman 1628526dfc15SBarry Smith if (!B->preallocated) { 1629f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1630d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16319c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 163252e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1633f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1634d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16354aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 163652e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1637ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1638526dfc15SBarry Smith } 1639a23d5eceSKris Buschelman 1640526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1641526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 164226fbe8dcSKarl Rupp 1643526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1644a23d5eceSKris Buschelman PetscFunctionReturn(0); 1645a23d5eceSKris Buschelman } 1646a23d5eceSKris Buschelman 1647dfb205c3SBarry Smith #undef __FUNCT__ 1648dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1649dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1650dfb205c3SBarry Smith { 1651dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1652dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1653dfb205c3SBarry Smith const PetscInt *JJ =0; 1654dfb205c3SBarry Smith PetscScalar *values=0; 1655dfb205c3SBarry Smith PetscErrorCode ierr; 1656dfb205c3SBarry Smith 1657dfb205c3SBarry Smith PetscFunctionBegin; 1658ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1659dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1660dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1661dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1662dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1663e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1664dfb205c3SBarry Smith m = B->rmap->n/bs; 1665dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1666dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1667dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1668dfb205c3SBarry Smith 1669dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1670dfb205c3SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 1671dfb205c3SBarry Smith for (i=0; i<m; i++) { 1672dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1673dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1674dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1675dfb205c3SBarry Smith JJ = jj + ii[i]; 1676dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1677dfb205c3SBarry Smith if (*JJ >= cstart) break; 1678dfb205c3SBarry Smith JJ++; 1679dfb205c3SBarry Smith } 1680dfb205c3SBarry Smith d = 0; 1681dfb205c3SBarry Smith for (; j<nz; j++) { 1682dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1683dfb205c3SBarry Smith d++; 1684dfb205c3SBarry Smith } 1685dfb205c3SBarry Smith d_nnz[i] = d; 1686dfb205c3SBarry Smith o_nnz[i] = nz - d; 1687dfb205c3SBarry Smith } 1688dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1689dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1690dfb205c3SBarry Smith 1691dfb205c3SBarry Smith values = (PetscScalar*)V; 1692dfb205c3SBarry Smith if (!values) { 1693dfb205c3SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 1694dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1695dfb205c3SBarry Smith } 1696dfb205c3SBarry Smith for (i=0; i<m; i++) { 1697dfb205c3SBarry Smith PetscInt row = i + rstart; 1698dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1699dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1700dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1701dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1702dfb205c3SBarry Smith } 1703dfb205c3SBarry Smith 1704dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1705dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1706dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17077827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1708dfb205c3SBarry Smith PetscFunctionReturn(0); 1709dfb205c3SBarry Smith } 1710dfb205c3SBarry Smith 1711611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 17128cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1713611f576cSBarry Smith #endif 1714b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 17158cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1716b5e56a35SBarry Smith #endif 17175c9eb25fSBarry Smith 17180bad9183SKris Buschelman /*MC 1719fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1720828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1721828413b8SBarry Smith the matrix is stored. 1722828413b8SBarry Smith 1723828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1724828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17250bad9183SKris Buschelman 17260bad9183SKris Buschelman Options Database Keys: 17270bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17280bad9183SKris Buschelman 17290bad9183SKris Buschelman Level: beginner 17300bad9183SKris Buschelman 17310bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17320bad9183SKris Buschelman M*/ 17330bad9183SKris Buschelman 17348cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1735aa5a9175SDahai Guo 1736a23d5eceSKris Buschelman #undef __FUNCT__ 17374a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17388cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1739b5df2d14SHong Zhang { 1740b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1741dfbe8321SBarry Smith PetscErrorCode ierr; 1742ace3abfcSBarry Smith PetscBool flg; 1743b5df2d14SHong Zhang 1744b5df2d14SHong Zhang PetscFunctionBegin; 174538f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1746b0a32e0cSBarry Smith B->data = (void*)b; 1747b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1748b5df2d14SHong Zhang 1749b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1750b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1751b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1752b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 175326fbe8dcSKarl Rupp 1754ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1755ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1756b5df2d14SHong Zhang 1757b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1758899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1759b5df2d14SHong Zhang 1760b5df2d14SHong Zhang /* build cache for off array entries formed */ 1761ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 176226fbe8dcSKarl Rupp 1763b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 17640298fd71SBarry Smith b->colmap = NULL; 17650298fd71SBarry Smith b->garray = NULL; 1766b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1767b5df2d14SHong Zhang 1768b5df2d14SHong Zhang /* stuff used in block assembly */ 1769b5df2d14SHong Zhang b->barray = 0; 1770b5df2d14SHong Zhang 1771b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1772b5df2d14SHong Zhang b->lvec = 0; 1773b5df2d14SHong Zhang b->Mvctx = 0; 177440781036SHong Zhang b->slvec0 = 0; 177540781036SHong Zhang b->slvec0b = 0; 177640781036SHong Zhang b->slvec1 = 0; 177740781036SHong Zhang b->slvec1a = 0; 177840781036SHong Zhang b->slvec1b = 0; 177940781036SHong Zhang b->sMvctx = 0; 1780b5df2d14SHong Zhang 1781b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1782b5df2d14SHong Zhang b->rowindices = 0; 1783b5df2d14SHong Zhang b->rowvalues = 0; 1784b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1785b5df2d14SHong Zhang 1786b5df2d14SHong Zhang /* hash table stuff */ 1787b5df2d14SHong Zhang b->ht = 0; 1788b5df2d14SHong Zhang b->hd = 0; 1789b5df2d14SHong Zhang b->ht_size = 0; 1790b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1791b5df2d14SHong Zhang b->ht_fact = 0; 1792b5df2d14SHong Zhang b->ht_total_ct = 0; 1793b5df2d14SHong Zhang b->ht_insert_ct = 0; 1794b5df2d14SHong Zhang 17957a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 17967a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 17977a868f3eSHong Zhang 179859ffdab8SBarry Smith b->in_loc = 0; 179959ffdab8SBarry Smith b->v_loc = 0; 180059ffdab8SBarry Smith b->n_loc = 0; 1801ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 18020298fd71SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr); 1803b5df2d14SHong Zhang if (flg) { 1804f6275e2eSBarry Smith PetscReal fact = 1.39; 18054e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 18060298fd71SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 1807b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1808b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 18091e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1810b5df2d14SHong Zhang } 18118c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 18128c07d4e3SBarry Smith 1813b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 181400de8ff0SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C","MatGetFactor_mpisbaij_pastix",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1815b5e56a35SBarry Smith #endif 1816611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 181700de8ff0SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C","MatGetFactor_sbaij_mumps",MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1818611f576cSBarry Smith #endif 181900de8ff0SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C","MatStoreValues_MPISBAIJ",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 182000de8ff0SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C","MatRetrieveValues_MPISBAIJ",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 182100de8ff0SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C","MatGetDiagonalBlock_MPISBAIJ",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 182200de8ff0SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C","MatMPISBAIJSetPreallocation_MPISBAIJ",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 182300de8ff0SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C","MatMPISBAIJSetPreallocationCSR_MPISBAIJ",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 182400de8ff0SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C","MatConvert_MPISBAIJ_MPISBSTRM",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1825aa5a9175SDahai Guo 182623ce1328SBarry Smith B->symmetric = PETSC_TRUE; 182723ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 182823ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 182923ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 183026fbe8dcSKarl Rupp 183117667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1832b5df2d14SHong Zhang PetscFunctionReturn(0); 1833b5df2d14SHong Zhang } 1834b5df2d14SHong Zhang 1835209238afSKris Buschelman /*MC 1836002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1837209238afSKris Buschelman 1838209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1839209238afSKris Buschelman and MATMPISBAIJ otherwise. 1840209238afSKris Buschelman 1841209238afSKris Buschelman Options Database Keys: 1842209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1843209238afSKris Buschelman 1844209238afSKris Buschelman Level: beginner 1845209238afSKris Buschelman 1846209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1847209238afSKris Buschelman M*/ 1848209238afSKris Buschelman 18494a2ae208SSatish Balay #undef __FUNCT__ 18504a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1851b5df2d14SHong Zhang /*@C 1852b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1853b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1854b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1855b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1856b5df2d14SHong Zhang 1857b5df2d14SHong Zhang Collective on Mat 1858b5df2d14SHong Zhang 1859b5df2d14SHong Zhang Input Parameters: 1860b5df2d14SHong Zhang + A - the matrix 1861b5df2d14SHong Zhang . bs - size of blockk 1862b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1863b5df2d14SHong Zhang submatrix (same for all local rows) 1864b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18656d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18660298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 186795742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1868b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1869b5df2d14SHong Zhang submatrix (same for all local rows). 1870b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1871c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 18720298fd71SBarry Smith (possibly different for each block row) or NULL. 1873b5df2d14SHong Zhang 1874b5df2d14SHong Zhang 1875b5df2d14SHong Zhang Options Database Keys: 1876b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1877b5df2d14SHong Zhang block calculations (much slower) 1878b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1879b5df2d14SHong Zhang 1880b5df2d14SHong Zhang Notes: 1881b5df2d14SHong Zhang 1882b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1883b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1884b5df2d14SHong Zhang 188549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 188649a6f317SBarry Smith 1887b5df2d14SHong Zhang Storage Information: 1888b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1889b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1890b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1891b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1892b5df2d14SHong Zhang 1893b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1894b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 18950298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1896b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1897b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1898b5df2d14SHong Zhang 1899aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1900aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1901aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1902aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1903aa95bbe8SBarry Smith 1904b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1905b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1906b5df2d14SHong Zhang 1907b5df2d14SHong Zhang .vb 1908b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1909b5df2d14SHong Zhang ------------------- 1910c2fc9fa9SBarry Smith row 3 | . . . d d d o o o o o o 1911c2fc9fa9SBarry Smith row 4 | . . . d d d o o o o o o 1912c2fc9fa9SBarry Smith row 5 | . . . d d d o o o o o o 1913b5df2d14SHong Zhang ------------------- 1914b5df2d14SHong Zhang .ve 1915b5df2d14SHong Zhang 1916b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1917b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19186d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19196d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1920b5df2d14SHong Zhang 19216d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19226d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1923c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1924c2fc9fa9SBarry Smith 1925b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1926b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1927b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1928b5df2d14SHong Zhang matrices. 1929b5df2d14SHong Zhang 1930b5df2d14SHong Zhang Level: intermediate 1931b5df2d14SHong Zhang 1932b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1933b5df2d14SHong Zhang 1934ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 1935b5df2d14SHong Zhang @*/ 19367087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1937b5df2d14SHong Zhang { 19384ac538c5SBarry Smith PetscErrorCode ierr; 1939b5df2d14SHong Zhang 1940b5df2d14SHong Zhang PetscFunctionBegin; 19416ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19426ba663aaSJed Brown PetscValidType(B,1); 19436ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19444ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1945b5df2d14SHong Zhang PetscFunctionReturn(0); 1946b5df2d14SHong Zhang } 1947b5df2d14SHong Zhang 19484a2ae208SSatish Balay #undef __FUNCT__ 194969b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 1950a30f8f8cSSatish Balay /*@C 195169b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1952a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1953a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1954a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1955a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1956a30f8f8cSSatish Balay 1957a30f8f8cSSatish Balay Collective on MPI_Comm 1958a30f8f8cSSatish Balay 1959a30f8f8cSSatish Balay Input Parameters: 1960a30f8f8cSSatish Balay + comm - MPI communicator 1961a30f8f8cSSatish Balay . bs - size of blockk 1962a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1963a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1964a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1965a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1966a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1967a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1968a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1969a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1970a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1971a30f8f8cSSatish Balay submatrix (same for all local rows) 1972a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19736d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19740298fd71SBarry Smith (possibly different for each block block row) or NULL. 197595742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 197695742e49SBarry Smith set its value even if it is zero. 1977a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1978a30f8f8cSSatish Balay submatrix (same for all local rows). 1979a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1980a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 19810298fd71SBarry Smith each block row) or NULL. 1982a30f8f8cSSatish Balay 1983a30f8f8cSSatish Balay Output Parameter: 1984a30f8f8cSSatish Balay . A - the matrix 1985a30f8f8cSSatish Balay 1986a30f8f8cSSatish Balay Options Database Keys: 1987a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1988a30f8f8cSSatish Balay block calculations (much slower) 1989a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1990a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1991a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1992a30f8f8cSSatish Balay 1993175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1994ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1995175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1996175b88e8SBarry Smith 1997a30f8f8cSSatish Balay Notes: 1998d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19996d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2000d1be2dadSMatthew Knepley 2001a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2002a30f8f8cSSatish Balay (possibly both). 2003a30f8f8cSSatish Balay 2004a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2005a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2006a30f8f8cSSatish Balay 200749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 200849a6f317SBarry Smith 2009a30f8f8cSSatish Balay Storage Information: 2010a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2011a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2012a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2013a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2014a30f8f8cSSatish Balay 2015a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2016a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 20170298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2018a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2019a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2020a30f8f8cSSatish Balay 2021a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2022a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2023a30f8f8cSSatish Balay 2024a30f8f8cSSatish Balay .vb 2025a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2026a30f8f8cSSatish Balay ------------------- 2027c2fc9fa9SBarry Smith row 3 | . . . d d d o o o o o o 2028c2fc9fa9SBarry Smith row 4 | . . . d d d o o o o o o 2029c2fc9fa9SBarry Smith row 5 | . . . d d d o o o o o o 2030a30f8f8cSSatish Balay ------------------- 2031a30f8f8cSSatish Balay .ve 2032a30f8f8cSSatish Balay 2033a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2034a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20356d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20366d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2037a30f8f8cSSatish Balay 20386d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20396d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2040a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2041a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2042a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2043a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2044a30f8f8cSSatish Balay matrices. 2045a30f8f8cSSatish Balay 2046a30f8f8cSSatish Balay Level: intermediate 2047a30f8f8cSSatish Balay 2048a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2049a30f8f8cSSatish Balay 205069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2051a30f8f8cSSatish Balay @*/ 2052a30f8f8cSSatish Balay 205369b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2054a30f8f8cSSatish Balay { 20556849ba73SBarry Smith PetscErrorCode ierr; 20561302d50aSBarry Smith PetscMPIInt size; 2057a30f8f8cSSatish Balay 2058a30f8f8cSSatish Balay PetscFunctionBegin; 2059f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2060f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2061273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2062273d9f13SBarry Smith if (size > 1) { 2063b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2064b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2065273d9f13SBarry Smith } else { 2066273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2067273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2068273d9f13SBarry Smith } 2069a30f8f8cSSatish Balay PetscFunctionReturn(0); 2070a30f8f8cSSatish Balay } 2071a30f8f8cSSatish Balay 2072a30f8f8cSSatish Balay 20734a2ae208SSatish Balay #undef __FUNCT__ 20744a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20756849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2076a30f8f8cSSatish Balay { 2077a30f8f8cSSatish Balay Mat mat; 2078a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2079dfbe8321SBarry Smith PetscErrorCode ierr; 2080d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2081387bc808SHong Zhang PetscScalar *array; 2082a30f8f8cSSatish Balay 2083a30f8f8cSSatish Balay PetscFunctionBegin; 2084a30f8f8cSSatish Balay *newmat = 0; 208526fbe8dcSKarl Rupp 2086ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2087d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20887adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20891d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 20901e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 20911e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2092e1b6402fSHong Zhang 2093d5f3da31SBarry Smith mat->factortype = matin->factortype; 2094273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 209582327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20967fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20977fff6886SHong Zhang 2098b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2099a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2100a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2101a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2102a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2103a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2104a30f8f8cSSatish Balay 2105899cda47SBarry Smith 2106a30f8f8cSSatish Balay a->size = oldmat->size; 2107a30f8f8cSSatish Balay a->rank = oldmat->rank; 2108a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2109a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2110a30f8f8cSSatish Balay a->rowindices = 0; 2111a30f8f8cSSatish Balay a->rowvalues = 0; 2112a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2113a30f8f8cSSatish Balay a->barray = 0; 2114899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2115899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2116899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2117899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2118a30f8f8cSSatish Balay 2119a30f8f8cSSatish Balay /* hash table stuff */ 2120a30f8f8cSSatish Balay a->ht = 0; 2121a30f8f8cSSatish Balay a->hd = 0; 2122a30f8f8cSSatish Balay a->ht_size = 0; 2123a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2124a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2125a30f8f8cSSatish Balay a->ht_total_ct = 0; 2126a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2127a30f8f8cSSatish Balay 2128899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2129a30f8f8cSSatish Balay if (oldmat->colmap) { 2130a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2131a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2132a30f8f8cSSatish Balay #else 21331302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 213452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21351302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2136a30f8f8cSSatish Balay #endif 2137a30f8f8cSSatish Balay } else a->colmap = 0; 2138387bc808SHong Zhang 2139a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21401302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 214152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21421302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2143a30f8f8cSSatish Balay } else a->garray = 0; 2144a30f8f8cSSatish Balay 2145ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 214752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2148a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 214952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 215082327fa8SHong Zhang 215182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 215252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 215382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 215452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2155387bc808SHong Zhang 2156387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21571ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2158778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2159778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21601ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21611ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2162778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21631ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 216452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 216552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 216652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 216752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 216852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2169387bc808SHong Zhang 2170387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2171387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2172387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 217352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 217482327fa8SHong Zhang 2175a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 217652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 217852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2179140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay *newmat = mat; 2181a30f8f8cSSatish Balay PetscFunctionReturn(0); 2182a30f8f8cSSatish Balay } 2183a30f8f8cSSatish Balay 21844a2ae208SSatish Balay #undef __FUNCT__ 21855bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2186112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 218795936485SShri Abhyankar { 218895936485SShri Abhyankar PetscErrorCode ierr; 218995936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 219095936485SShri Abhyankar PetscScalar *vals,*buf; 2191ce94432eSBarry Smith MPI_Comm comm; 219295936485SShri Abhyankar MPI_Status status; 2193adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2194adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 219595936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 219695936485SShri Abhyankar PetscInt bs =1,Mbs,mbs,extra_rows; 219795936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 219895936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 219995936485SShri Abhyankar int fd; 220095936485SShri Abhyankar 220195936485SShri Abhyankar PetscFunctionBegin; 2202ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 22030298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 22040298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 220595936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 220695936485SShri Abhyankar 220795936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 220895936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 220995936485SShri Abhyankar if (!rank) { 221095936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 221195936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 221295936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 221395936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 221495936485SShri Abhyankar } 221595936485SShri Abhyankar 221695936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 221795936485SShri Abhyankar 221895936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 221926fbe8dcSKarl Rupp M = header[1]; 222026fbe8dcSKarl Rupp N = header[2]; 222195936485SShri Abhyankar 222295936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 222395936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 222495936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 222595936485SShri Abhyankar 222695936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 222795936485SShri Abhyankar if (sizesset) { 222895936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 222995936485SShri Abhyankar } 2230abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2231abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 223295936485SShri Abhyankar 223395936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 223495936485SShri Abhyankar 223595936485SShri Abhyankar /* 223695936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 223795936485SShri Abhyankar divisible by the blocksize 223895936485SShri Abhyankar */ 223995936485SShri Abhyankar Mbs = M/bs; 224095936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 224195936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 224295936485SShri Abhyankar else Mbs++; 224395936485SShri Abhyankar if (extra_rows &&!rank) { 224495936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 224595936485SShri Abhyankar } 224695936485SShri Abhyankar 224795936485SShri Abhyankar /* determine ownership of all rows */ 224895936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 224995936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 225095936485SShri Abhyankar m = mbs*bs; 225195936485SShri Abhyankar } else { /* User Set */ 225295936485SShri Abhyankar m = newmat->rmap->n; 225395936485SShri Abhyankar mbs = m/bs; 225495936485SShri Abhyankar } 225595936485SShri Abhyankar ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 22564dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 225795936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 225895936485SShri Abhyankar rowners[0] = 0; 225995936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 226095936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 226195936485SShri Abhyankar rstart = rowners[rank]; 226295936485SShri Abhyankar rend = rowners[rank+1]; 226395936485SShri Abhyankar 226495936485SShri Abhyankar /* distribute row lengths to all processors */ 2265adcec1e5SJed Brown ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 226695936485SShri Abhyankar if (!rank) { 226795936485SShri Abhyankar ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 226895936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 226995936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 227095936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 227195936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 227295936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 227395936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 227495936485SShri Abhyankar } else { 227595936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 227695936485SShri Abhyankar } 227795936485SShri Abhyankar 227895936485SShri Abhyankar if (!rank) { /* procs[0] */ 227995936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 228095936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 228195936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 228295936485SShri Abhyankar for (i=0; i<size; i++) { 228395936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 228495936485SShri Abhyankar procsnz[i] += rowlengths[j]; 228595936485SShri Abhyankar } 228695936485SShri Abhyankar } 228795936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 228895936485SShri Abhyankar 228995936485SShri Abhyankar /* determine max buffer needed and allocate it */ 229095936485SShri Abhyankar maxnz = 0; 229195936485SShri Abhyankar for (i=0; i<size; i++) { 229295936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 229395936485SShri Abhyankar } 229495936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 229595936485SShri Abhyankar 229695936485SShri Abhyankar /* read in my part of the matrix column indices */ 229795936485SShri Abhyankar nz = procsnz[0]; 229895936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 229995936485SShri Abhyankar mycols = ibuf; 230095936485SShri Abhyankar if (size == 1) nz -= extra_rows; 230195936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 230226fbe8dcSKarl Rupp if (size == 1) { 230326fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 230426fbe8dcSKarl Rupp } 230595936485SShri Abhyankar 230695936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 230795936485SShri Abhyankar for (i=1; i<size-1; i++) { 230895936485SShri Abhyankar nz = procsnz[i]; 230995936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 231095936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 231195936485SShri Abhyankar } 231295936485SShri Abhyankar /* read in the stuff for the last proc */ 231395936485SShri Abhyankar if (size != 1) { 231495936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 231595936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 231695936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 231795936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 231895936485SShri Abhyankar } 231995936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 232095936485SShri Abhyankar } else { /* procs[i], i>0 */ 232195936485SShri Abhyankar /* determine buffer space needed for message */ 232295936485SShri Abhyankar nz = 0; 232326fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 232495936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 232595936485SShri Abhyankar mycols = ibuf; 232695936485SShri Abhyankar /* receive message of column indices*/ 232795936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 232895936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 232995936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 233095936485SShri Abhyankar } 233195936485SShri Abhyankar 233295936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 233395936485SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 233495936485SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 233595936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 233695936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 233795936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 233895936485SShri Abhyankar rowcount = 0; 233995936485SShri Abhyankar nzcount = 0; 234095936485SShri Abhyankar for (i=0; i<mbs; i++) { 234195936485SShri Abhyankar dcount = 0; 234295936485SShri Abhyankar odcount = 0; 234395936485SShri Abhyankar for (j=0; j<bs; j++) { 234495936485SShri Abhyankar kmax = locrowlens[rowcount]; 234595936485SShri Abhyankar for (k=0; k<kmax; k++) { 234695936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 234795936485SShri Abhyankar if (!mask[tmp]) { 234895936485SShri Abhyankar mask[tmp] = 1; 234995936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 235095936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 235195936485SShri Abhyankar } 235295936485SShri Abhyankar } 235395936485SShri Abhyankar rowcount++; 235495936485SShri Abhyankar } 235595936485SShri Abhyankar 235695936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 235795936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 235895936485SShri Abhyankar 235995936485SShri Abhyankar /* zero out the mask elements we set */ 236095936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 236195936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 236295936485SShri Abhyankar } 236395936485SShri Abhyankar if (!sizesset) { 236495936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 236595936485SShri Abhyankar } 236695936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 23676816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 236895936485SShri Abhyankar 236995936485SShri Abhyankar if (!rank) { 237095936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 237195936485SShri Abhyankar /* read in my part of the matrix numerical values */ 237295936485SShri Abhyankar nz = procsnz[0]; 237395936485SShri Abhyankar vals = buf; 237495936485SShri Abhyankar mycols = ibuf; 237595936485SShri Abhyankar if (size == 1) nz -= extra_rows; 237695936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 237726fbe8dcSKarl Rupp if (size == 1) { 237826fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 237926fbe8dcSKarl Rupp } 238095936485SShri Abhyankar 238195936485SShri Abhyankar /* insert into matrix */ 238295936485SShri Abhyankar jj = rstart*bs; 238395936485SShri Abhyankar for (i=0; i<m; i++) { 238495936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 238595936485SShri Abhyankar mycols += locrowlens[i]; 238695936485SShri Abhyankar vals += locrowlens[i]; 238795936485SShri Abhyankar jj++; 238895936485SShri Abhyankar } 238995936485SShri Abhyankar 239095936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 239195936485SShri Abhyankar for (i=1; i<size-1; i++) { 239295936485SShri Abhyankar nz = procsnz[i]; 239395936485SShri Abhyankar vals = buf; 239495936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 239595936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 239695936485SShri Abhyankar } 239795936485SShri Abhyankar /* the last proc */ 239895936485SShri Abhyankar if (size != 1) { 239995936485SShri Abhyankar nz = procsnz[i] - extra_rows; 240095936485SShri Abhyankar vals = buf; 240195936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 240295936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 240395936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 240495936485SShri Abhyankar } 240595936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 240695936485SShri Abhyankar 240795936485SShri Abhyankar } else { 240895936485SShri Abhyankar /* receive numeric values */ 240995936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 241095936485SShri Abhyankar 241195936485SShri Abhyankar /* receive message of values*/ 241295936485SShri Abhyankar vals = buf; 241395936485SShri Abhyankar mycols = ibuf; 241495936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 241595936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 241695936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 241795936485SShri Abhyankar 241895936485SShri Abhyankar /* insert into matrix */ 241995936485SShri Abhyankar jj = rstart*bs; 242095936485SShri Abhyankar for (i=0; i<m; i++) { 242195936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 242295936485SShri Abhyankar mycols += locrowlens[i]; 242395936485SShri Abhyankar vals += locrowlens[i]; 242495936485SShri Abhyankar jj++; 242595936485SShri Abhyankar } 242695936485SShri Abhyankar } 242795936485SShri Abhyankar 242895936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 242995936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 243095936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 243195936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 243295936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 243395936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 243495936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 243595936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 243695936485SShri Abhyankar PetscFunctionReturn(0); 243795936485SShri Abhyankar } 243895936485SShri Abhyankar 243995936485SShri Abhyankar #undef __FUNCT__ 24404a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2441dcf5cc72SBarry Smith /*XXXXX@ 2442a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2443a30f8f8cSSatish Balay 2444a30f8f8cSSatish Balay Input Parameters: 2445a30f8f8cSSatish Balay . mat - the matrix 2446a30f8f8cSSatish Balay . fact - factor 2447a30f8f8cSSatish Balay 2448c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2449a30f8f8cSSatish Balay 2450a30f8f8cSSatish Balay Level: advanced 2451a30f8f8cSSatish Balay 2452a30f8f8cSSatish Balay Notes: 2453a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2454a30f8f8cSSatish Balay 2455a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2456a30f8f8cSSatish Balay 2457a30f8f8cSSatish Balay .seealso: MatSetOption() 2458dcf5cc72SBarry Smith @XXXXX*/ 2459dcf5cc72SBarry Smith 246024d5174aSHong Zhang 24614a2ae208SSatish Balay #undef __FUNCT__ 2462985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2463985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 246424d5174aSHong Zhang { 246524d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2466f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2467ca54ac64SHong Zhang PetscReal atmp; 246887828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2469dfbe8321SBarry Smith PetscErrorCode ierr; 24701302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24711302d50aSBarry Smith PetscMPIInt rank,size; 24721302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 247387828ca2SBarry Smith PetscScalar *va; 24748a1c53f2SBarry Smith MatScalar *ba; 2475f4c0e9e4SHong Zhang MPI_Status stat; 247624d5174aSHong Zhang 247724d5174aSHong Zhang PetscFunctionBegin; 2478e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 24790298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 24801ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2481f4c0e9e4SHong Zhang 2482ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2483ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2484f4c0e9e4SHong Zhang 2485d0f46423SBarry Smith bs = A->rmap->bs; 2486f4c0e9e4SHong Zhang mbs = a->mbs; 2487f4c0e9e4SHong Zhang Mbs = a->Mbs; 2488f4c0e9e4SHong Zhang ba = b->a; 2489f4c0e9e4SHong Zhang bi = b->i; 2490f4c0e9e4SHong Zhang bj = b->j; 2491f4c0e9e4SHong Zhang 2492f4c0e9e4SHong Zhang /* find ownerships */ 2493d0f46423SBarry Smith rowners_bs = A->rmap->range; 2494f4c0e9e4SHong Zhang 2495f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 249682502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2497ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2498f4c0e9e4SHong Zhang 2499f4c0e9e4SHong Zhang /* row_max for B */ 2500b8475685SHong Zhang if (rank != size-1) { 2501f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2502f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2503f4c0e9e4SHong Zhang brow = bs*i; 2504f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2505f4c0e9e4SHong Zhang bcol = bs*(*bj); 2506f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2507ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 250804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2509f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2510f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2511ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2512ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2513f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2514f4c0e9e4SHong Zhang } 2515f4c0e9e4SHong Zhang } 2516f4c0e9e4SHong Zhang bj++; 2517f4c0e9e4SHong Zhang } 2518f4c0e9e4SHong Zhang } 2519f4c0e9e4SHong Zhang 2520f4c0e9e4SHong Zhang /* send values to its owners */ 2521f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2522f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2523ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2524ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2525ca54ac64SHong Zhang } 2526f4c0e9e4SHong Zhang } 2527f4c0e9e4SHong Zhang 2528f4c0e9e4SHong Zhang /* receive values */ 2529ca54ac64SHong Zhang if (rank) { 2530f4c0e9e4SHong Zhang rvalues = work; 2531ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2532f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2533ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2534f4c0e9e4SHong Zhang /* process values */ 2535f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2536ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2537f4c0e9e4SHong Zhang } 2538f4c0e9e4SHong Zhang } 2539ca54ac64SHong Zhang } 2540f4c0e9e4SHong Zhang 25411ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2542ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 254324d5174aSHong Zhang PetscFunctionReturn(0); 254424d5174aSHong Zhang } 25452798e883SHong Zhang 25462798e883SHong Zhang #undef __FUNCT__ 254741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 254841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25492798e883SHong Zhang { 25502798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2551dfbe8321SBarry Smith PetscErrorCode ierr; 2552d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25533649974fSBarry Smith PetscScalar *x,*ptr,*from; 2554ffe4fb16SHong Zhang Vec bb1; 25553649974fSBarry Smith const PetscScalar *b; 2556ffe4fb16SHong Zhang 2557ffe4fb16SHong Zhang PetscFunctionBegin; 2558e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2559e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2560ffe4fb16SHong Zhang 2561a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 256241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2563a2b30743SBarry Smith PetscFunctionReturn(0); 2564a2b30743SBarry Smith } 2565a2b30743SBarry Smith 2566ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2567ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 256841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2569ffe4fb16SHong Zhang its--; 2570ffe4fb16SHong Zhang } 2571ffe4fb16SHong Zhang 2572ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2573ffe4fb16SHong Zhang while (its--) { 2574ffe4fb16SHong Zhang 2575ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2576ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2577ffe4fb16SHong Zhang 2578ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25791ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25801ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2581ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25821ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2583ffe4fb16SHong Zhang 2584efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2585ffe4fb16SHong Zhang 2586ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25871ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25883649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2589ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25901ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2591ffe4fb16SHong Zhang 2592ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2593fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2594ffe4fb16SHong Zhang 2595ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25961ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2597a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2598ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2599ffe4fb16SHong Zhang 2600ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2601ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2602ffe4fb16SHong Zhang 2603ffe4fb16SHong Zhang /* local diagonal sweep */ 260441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2605ffe4fb16SHong Zhang } 26066bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2607fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 260841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2609fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 261041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2611fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2612fa22f6d0SBarry Smith Vec xx1; 2613ace3abfcSBarry Smith PetscBool hasop; 261420f1ed55SBarry Smith const PetscScalar *diag; 2615887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 261620f1ed55SBarry Smith PetscInt i,n; 2617fa22f6d0SBarry Smith 2618fa22f6d0SBarry Smith if (!mat->xx1) { 2619fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2620fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2621fa22f6d0SBarry Smith } 2622fa22f6d0SBarry Smith xx1 = mat->xx1; 2623fa22f6d0SBarry Smith bb1 = mat->bb1; 2624fa22f6d0SBarry Smith 262541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2626fa22f6d0SBarry Smith 2627fa22f6d0SBarry Smith if (!mat->diag) { 2628effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26290298fd71SBarry Smith ierr = MatGetVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2630fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2631fa22f6d0SBarry Smith } 2632fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2633fa22f6d0SBarry Smith 2634fa22f6d0SBarry Smith if (hasop) { 2635fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2636887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 263720f1ed55SBarry Smith } else { 263820f1ed55SBarry Smith /* 263920f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 264020f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2641887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 264220f1ed55SBarry Smith */ 264320f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26443649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26453649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 264620f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 264720f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2648887ee2caSBarry Smith if (omega == 1.0) { 264926fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 265020f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2651887ee2caSBarry Smith } else { 265226fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2653887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2654887ee2caSBarry Smith } 265520f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26563649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26573649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 265820f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 265920f1ed55SBarry Smith } 2660fa22f6d0SBarry Smith 2661fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2662fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2663fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2664fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2665fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2666fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2667fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2668fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2669fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2670fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2671effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2672fa22f6d0SBarry Smith 2673fa22f6d0SBarry Smith /* local sweep */ 267441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2675fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2676f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2677ffe4fb16SHong Zhang PetscFunctionReturn(0); 2678ffe4fb16SHong Zhang } 2679ffe4fb16SHong Zhang 2680ffe4fb16SHong Zhang #undef __FUNCT__ 268141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 268241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2683ffe4fb16SHong Zhang { 2684ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2685dfbe8321SBarry Smith PetscErrorCode ierr; 26862798e883SHong Zhang Vec lvec1,bb1; 26872798e883SHong Zhang 26882798e883SHong Zhang PetscFunctionBegin; 2689e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2690e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26912798e883SHong Zhang 2692c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 26932798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 269441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26952798e883SHong Zhang its--; 26962798e883SHong Zhang } 26972798e883SHong Zhang 26982798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26992798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27002798e883SHong Zhang while (its--) { 2701ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27022798e883SHong Zhang 27032798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27042798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2705efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27062798e883SHong Zhang 2707ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27082798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2709ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27102798e883SHong Zhang 27112798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2712efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 27132798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27142798e883SHong Zhang 2715ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27162798e883SHong Zhang 2717c14dc6b6SHong Zhang /* diagonal sweep */ 271841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27192798e883SHong Zhang } 27206bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27216bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27226bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27232798e883SHong Zhang PetscFunctionReturn(0); 27242798e883SHong Zhang } 27252798e883SHong Zhang 2726dfb205c3SBarry Smith #undef __FUNCT__ 2727dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2728dfb205c3SBarry Smith /*@ 2729dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2730dfb205c3SBarry Smith CSR format the local rows. 2731dfb205c3SBarry Smith 2732dfb205c3SBarry Smith Collective on MPI_Comm 2733dfb205c3SBarry Smith 2734dfb205c3SBarry Smith Input Parameters: 2735dfb205c3SBarry Smith + comm - MPI communicator 2736dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2737dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2738dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2739dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2740dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2741dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2742dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2743dfb205c3SBarry Smith . i - row indices 2744dfb205c3SBarry Smith . j - column indices 2745dfb205c3SBarry Smith - a - matrix values 2746dfb205c3SBarry Smith 2747dfb205c3SBarry Smith Output Parameter: 2748dfb205c3SBarry Smith . mat - the matrix 2749dfb205c3SBarry Smith 2750dfb205c3SBarry Smith Level: intermediate 2751dfb205c3SBarry Smith 2752dfb205c3SBarry Smith Notes: 2753dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2754dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2755dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2756dfb205c3SBarry Smith 2757dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2758dfb205c3SBarry Smith 2759dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2760dfb205c3SBarry Smith 2761dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 276269b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2763dfb205c3SBarry Smith @*/ 27647087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2765dfb205c3SBarry Smith { 2766dfb205c3SBarry Smith PetscErrorCode ierr; 2767dfb205c3SBarry Smith 2768dfb205c3SBarry Smith 2769dfb205c3SBarry Smith PetscFunctionBegin; 2770f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2771dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2772dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2773dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2774dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2775dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2776dfb205c3SBarry Smith PetscFunctionReturn(0); 2777dfb205c3SBarry Smith } 2778dfb205c3SBarry Smith 2779dfb205c3SBarry Smith 2780dfb205c3SBarry Smith #undef __FUNCT__ 2781dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2782dfb205c3SBarry Smith /*@C 2783dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2784dfb205c3SBarry Smith (the default parallel PETSc format). 2785dfb205c3SBarry Smith 2786dfb205c3SBarry Smith Collective on MPI_Comm 2787dfb205c3SBarry Smith 2788dfb205c3SBarry Smith Input Parameters: 2789dfb205c3SBarry Smith + A - the matrix 2790dfb205c3SBarry Smith . bs - the block size 2791dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2792dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2793dfb205c3SBarry Smith - v - optional values in the matrix 2794dfb205c3SBarry Smith 2795dfb205c3SBarry Smith Level: developer 2796dfb205c3SBarry Smith 2797dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2798dfb205c3SBarry Smith 279969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2800dfb205c3SBarry Smith @*/ 28017087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2802dfb205c3SBarry Smith { 28034ac538c5SBarry Smith PetscErrorCode ierr; 2804dfb205c3SBarry Smith 2805dfb205c3SBarry Smith PetscFunctionBegin; 28064ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2807dfb205c3SBarry Smith PetscFunctionReturn(0); 2808dfb205c3SBarry Smith } 2809dfb205c3SBarry Smith 2810dfb205c3SBarry Smith 2811