xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 3964eb8815a373d98cd54ebd45324cfa27b228df)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
364a2ae208SSatish Balay #undef __FUNCT__
374a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
387087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
39a30f8f8cSSatish Balay {
40f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
41dfbe8321SBarry Smith   PetscErrorCode ierr;
42a30f8f8cSSatish Balay 
43a30f8f8cSSatish Balay   PetscFunctionBegin;
44a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
45a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
46a30f8f8cSSatish Balay   PetscFunctionReturn(0);
47a30f8f8cSSatish Balay }
48a30f8f8cSSatish Balay 
49a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
50a30f8f8cSSatish Balay   { \
51a30f8f8cSSatish Balay  \
52a30f8f8cSSatish Balay     brow = row/bs;  \
53a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
54a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
55a30f8f8cSSatish Balay     bcol = col/bs; \
56a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
57a30f8f8cSSatish Balay     low  = 0; high = nrow; \
58a30f8f8cSSatish Balay     while (high-low > 3) { \
59a30f8f8cSSatish Balay       t = (low+high)/2; \
60a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
61a30f8f8cSSatish Balay       else              low  = t; \
62a30f8f8cSSatish Balay     } \
63a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
64a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
65a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
66a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
67a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
68a30f8f8cSSatish Balay         else                    *bap  = value;  \
69a30f8f8cSSatish Balay         goto a_noinsert; \
70a30f8f8cSSatish Balay       } \
71a30f8f8cSSatish Balay     } \
72a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
73e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
74fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
75a30f8f8cSSatish Balay     N = nrow++ - 1;  \
76a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
77a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
78a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
79a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
80a30f8f8cSSatish Balay     } \
81a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
82a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
83a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
84a30f8f8cSSatish Balay a_noinsert:; \
85a30f8f8cSSatish Balay     ailen[brow] = nrow; \
86a30f8f8cSSatish Balay   }
87e5e170daSBarry Smith 
88a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
89a30f8f8cSSatish Balay   { \
90a30f8f8cSSatish Balay     brow = row/bs;  \
91a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
92a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
93a30f8f8cSSatish Balay     bcol = col/bs; \
94a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
95a30f8f8cSSatish Balay     low  = 0; high = nrow; \
96a30f8f8cSSatish Balay     while (high-low > 3) { \
97a30f8f8cSSatish Balay       t = (low+high)/2; \
98a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
99a30f8f8cSSatish Balay       else              low  = t; \
100a30f8f8cSSatish Balay     } \
101a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
102a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
103a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
104a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
105a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
106a30f8f8cSSatish Balay         else                    *bap  = value;  \
107a30f8f8cSSatish Balay         goto b_noinsert; \
108a30f8f8cSSatish Balay       } \
109a30f8f8cSSatish Balay     } \
110a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
111e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
112fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
113a30f8f8cSSatish Balay     N = nrow++ - 1;  \
114a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
115a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
116a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
117a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
118a30f8f8cSSatish Balay     } \
119a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
120a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
121a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
122a30f8f8cSSatish Balay b_noinsert:; \
123a30f8f8cSSatish Balay     bilen[brow] = nrow; \
124a30f8f8cSSatish Balay   }
125a30f8f8cSSatish Balay 
126a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
127a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
128a30f8f8cSSatish Balay */
1294a2ae208SSatish Balay #undef __FUNCT__
130dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
131dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
132a30f8f8cSSatish Balay {
133a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
134a30f8f8cSSatish Balay   MatScalar      value;
135ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
136dfbe8321SBarry Smith   PetscErrorCode ierr;
1371302d50aSBarry Smith   PetscInt       i,j,row,col;
138d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
139d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
140d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
141a30f8f8cSSatish Balay 
142a30f8f8cSSatish Balay   /* Some Variables required in the macro */
143a30f8f8cSSatish Balay   Mat          A     = baij->A;
144a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1451302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
146a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
147a30f8f8cSSatish Balay 
148a30f8f8cSSatish Balay   Mat         B     = baij->B;
149a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1501302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
151a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
152a30f8f8cSSatish Balay 
1531302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1541302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
155a30f8f8cSSatish Balay   MatScalar *ap,*bap;
156a30f8f8cSSatish Balay 
157a30f8f8cSSatish Balay   /* for stash */
1580298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1590298fd71SBarry Smith   MatScalar *v_loc = NULL;
160a30f8f8cSSatish Balay 
161a30f8f8cSSatish Balay   PetscFunctionBegin;
16271fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
163a30f8f8cSSatish Balay   if (!baij->donotstash) {
16459ffdab8SBarry Smith     if (n > baij->n_loc) {
16559ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
16659ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
16759ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
16859ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
16926fbe8dcSKarl Rupp 
17059ffdab8SBarry Smith       baij->n_loc = n;
17159ffdab8SBarry Smith     }
17259ffdab8SBarry Smith     in_loc = baij->in_loc;
17359ffdab8SBarry Smith     v_loc  = baij->v_loc;
174a30f8f8cSSatish Balay   }
175a30f8f8cSSatish Balay 
176a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
177a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1782515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
179e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
180a30f8f8cSSatish Balay #endif
181a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
182a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
183a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18401b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
18501b2bd88SHong Zhang           if (a->ignore_ltriangular) {
18601b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
18726fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
18801b2bd88SHong Zhang         }
189a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
190a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
191a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
192a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
193db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
194db4deed7SKarl Rupp           else             value = v[i+j*m];
195a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
196a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
197a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1982515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
199cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
200a30f8f8cSSatish Balay #endif
201a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
202a30f8f8cSSatish Balay           if (mat->was_assembled) {
203a30f8f8cSSatish Balay             if (!baij->colmap) {
204ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
205a30f8f8cSSatish Balay             }
206a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
207a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
20871730473SSatish Balay             col  = col - 1;
209a30f8f8cSSatish Balay #else
21071730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
211a30f8f8cSSatish Balay #endif
212a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
213ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
214a30f8f8cSSatish Balay               col  =  in[j];
215a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
216a30f8f8cSSatish Balay               B    = baij->B;
217a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
218a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
219a30f8f8cSSatish Balay               ba   = b->a;
22071730473SSatish Balay             } else col += in[j]%bs;
221a30f8f8cSSatish Balay           } else col = in[j];
222db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
223db4deed7SKarl Rupp           else             value = v[i+j*m];
224a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
225a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
226a30f8f8cSSatish Balay         }
227a30f8f8cSSatish Balay       }
228a30f8f8cSSatish Balay     } else {  /* off processor entry */
2294cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
230a30f8f8cSSatish Balay       if (!baij->donotstash) {
2315080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
232a30f8f8cSSatish Balay         n_loc          = 0;
233a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
234f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
235a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
236a30f8f8cSSatish Balay           if (roworiented) {
237a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
238a30f8f8cSSatish Balay           } else {
239a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
240a30f8f8cSSatish Balay           }
241a30f8f8cSSatish Balay           n_loc++;
242a30f8f8cSSatish Balay         }
243b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
244a30f8f8cSSatish Balay       }
245a30f8f8cSSatish Balay     }
246a30f8f8cSSatish Balay   }
247a30f8f8cSSatish Balay   PetscFunctionReturn(0);
248a30f8f8cSSatish Balay }
249a30f8f8cSSatish Balay 
2504a2ae208SSatish Balay #undef __FUNCT__
251dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
252dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
253a30f8f8cSSatish Balay {
2540880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
255f15d580aSBarry Smith   const MatScalar *value;
256f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
257ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
258dfbe8321SBarry Smith   PetscErrorCode  ierr;
259899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
260899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
261d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2620880e062SHong Zhang 
263a30f8f8cSSatish Balay   PetscFunctionBegin;
2640880e062SHong Zhang   if (!barray) {
2650880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2660880e062SHong Zhang     baij->barray = barray;
2670880e062SHong Zhang   }
2680880e062SHong Zhang 
2690880e062SHong Zhang   if (roworiented) {
2700880e062SHong Zhang     stepval = (n-1)*bs;
2710880e062SHong Zhang   } else {
2720880e062SHong Zhang     stepval = (m-1)*bs;
2730880e062SHong Zhang   }
2740880e062SHong Zhang   for (i=0; i<m; i++) {
2750880e062SHong Zhang     if (im[i] < 0) continue;
2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
277e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2780880e062SHong Zhang #endif
2790880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2800880e062SHong Zhang       row = im[i] - rstart;
2810880e062SHong Zhang       for (j=0; j<n; j++) {
282f3f98c53SJed Brown         if (im[i] > in[j]) {
283f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
284e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
285f3f98c53SJed Brown         }
2860880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2870880e062SHong Zhang         if ((roworiented) && (n == 1)) {
288f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2890880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
290f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2910880e062SHong Zhang         } else { /* Here a copy is required */
2920880e062SHong Zhang           if (roworiented) {
2930880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2940880e062SHong Zhang           } else {
2950880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2960880e062SHong Zhang           }
2970880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2980880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2990880e062SHong Zhang               *barray++ = *value++;
3000880e062SHong Zhang             }
3010880e062SHong Zhang           }
3020880e062SHong Zhang           barray -=bs2;
3030880e062SHong Zhang         }
3040880e062SHong Zhang 
3050880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
3060880e062SHong Zhang           col  = in[j] - cstart;
3070880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
30826fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3092515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
310cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3110880e062SHong Zhang #endif
3120880e062SHong Zhang         else {
3130880e062SHong Zhang           if (mat->was_assembled) {
3140880e062SHong Zhang             if (!baij->colmap) {
315ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3160880e062SHong Zhang             }
3170880e062SHong Zhang 
3182515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3190880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3201302d50aSBarry Smith             { PetscInt data;
3210880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
322e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3230880e062SHong Zhang             }
3240880e062SHong Zhang #else
325e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3260880e062SHong Zhang #endif
3270880e062SHong Zhang #endif
3280880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3290880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3300880e062SHong Zhang             col  = (col - 1)/bs;
3310880e062SHong Zhang #else
3320880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3330880e062SHong Zhang #endif
3340880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
335ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3360880e062SHong Zhang               col  = in[j];
3370880e062SHong Zhang             }
33826fbe8dcSKarl Rupp           } else col = in[j];
339e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3400880e062SHong Zhang         }
3410880e062SHong Zhang       }
3420880e062SHong Zhang     } else {
3434cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3440880e062SHong Zhang       if (!baij->donotstash) {
3450880e062SHong Zhang         if (roworiented) {
3460880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3470880e062SHong Zhang         } else {
3480880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3490880e062SHong Zhang         }
3500880e062SHong Zhang       }
3510880e062SHong Zhang     }
3520880e062SHong Zhang   }
3530880e062SHong Zhang   PetscFunctionReturn(0);
354a30f8f8cSSatish Balay }
355a30f8f8cSSatish Balay 
3564a2ae208SSatish Balay #undef __FUNCT__
3574a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3581302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
359a30f8f8cSSatish Balay {
360f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3616849ba73SBarry Smith   PetscErrorCode ierr;
362d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
363d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
364a30f8f8cSSatish Balay 
365a30f8f8cSSatish Balay   PetscFunctionBegin;
366a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
367e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
368e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
369a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
370a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
371a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
372e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
373e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
374a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
375a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
376c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
377a30f8f8cSSatish Balay         } else {
378a30f8f8cSSatish Balay           if (!baij->colmap) {
379ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
380a30f8f8cSSatish Balay           }
381a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
382a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
383a30f8f8cSSatish Balay           data--;
384a30f8f8cSSatish Balay #else
385a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
386a30f8f8cSSatish Balay #endif
387a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
388a30f8f8cSSatish Balay           else {
389a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
390e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
391a30f8f8cSSatish Balay           }
392a30f8f8cSSatish Balay         }
393a30f8f8cSSatish Balay       }
394f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
395a30f8f8cSSatish Balay   }
396a30f8f8cSSatish Balay   PetscFunctionReturn(0);
397a30f8f8cSSatish Balay }
398a30f8f8cSSatish Balay 
3994a2ae208SSatish Balay #undef __FUNCT__
4004a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
401dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
402a30f8f8cSSatish Balay {
403a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
404dfbe8321SBarry Smith   PetscErrorCode ierr;
405a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
406a30f8f8cSSatish Balay 
407a30f8f8cSSatish Balay   PetscFunctionBegin;
408a30f8f8cSSatish Balay   if (baij->size == 1) {
409a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
410a30f8f8cSSatish Balay   } else {
411a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
412f6275e2eSBarry Smith       ierr    = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
413a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
414a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
415a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
416a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
417ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4188f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
419a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
4200b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4210b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4220b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4230b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
424899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
425d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4260b8dc8d2SHong Zhang       MatScalar    *v;
4270b8dc8d2SHong Zhang 
42874ed9c26SBarry Smith       ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
429d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4300b8dc8d2SHong Zhang       /* Amat */
4310b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4320b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4330b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4340b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
4350b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4360b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4370b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4380b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4390b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4400b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4410b8dc8d2SHong Zhang               /* non-diagonal block */
4420b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4430b8dc8d2SHong Zhang             }
4440b8dc8d2SHong Zhang           }
4450b8dc8d2SHong Zhang         }
4460b8dc8d2SHong Zhang       }
4470b8dc8d2SHong Zhang       /* Bmat */
4480b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4490b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4500b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4510b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4520b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4530b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4540b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4550b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4560b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4570b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4580b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4590b8dc8d2SHong Zhang             }
4600b8dc8d2SHong Zhang           }
4610b8dc8d2SHong Zhang         }
4620b8dc8d2SHong Zhang       }
463ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4640b8dc8d2SHong Zhang       *norm = 0.0;
465d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4660b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4670b8dc8d2SHong Zhang       }
46874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
469f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
470a30f8f8cSSatish Balay   }
471a30f8f8cSSatish Balay   PetscFunctionReturn(0);
472a30f8f8cSSatish Balay }
473a30f8f8cSSatish Balay 
4744a2ae208SSatish Balay #undef __FUNCT__
4754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
476dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
477a30f8f8cSSatish Balay {
478a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
479dfbe8321SBarry Smith   PetscErrorCode ierr;
4801302d50aSBarry Smith   PetscInt       nstash,reallocs;
481a30f8f8cSSatish Balay   InsertMode     addv;
482a30f8f8cSSatish Balay 
483a30f8f8cSSatish Balay   PetscFunctionBegin;
48426fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
485a30f8f8cSSatish Balay 
486a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
487ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
488ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
489a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
490a30f8f8cSSatish Balay 
491d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
4921e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
493a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4941e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
495a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4961e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
497a30f8f8cSSatish Balay   PetscFunctionReturn(0);
498a30f8f8cSSatish Balay }
499a30f8f8cSSatish Balay 
5004a2ae208SSatish Balay #undef __FUNCT__
5014a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
502dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
503a30f8f8cSSatish Balay {
504a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
505a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
5066849ba73SBarry Smith   PetscErrorCode ierr;
50713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
508e44c0bd4SBarry Smith   PetscInt       *row,*col;
509ace3abfcSBarry Smith   PetscBool      other_disassembled;
51013f74950SBarry Smith   PetscMPIInt    n;
511ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
512a30f8f8cSSatish Balay   MatScalar      *val;
513a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
514a30f8f8cSSatish Balay 
51591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
516a30f8f8cSSatish Balay   PetscFunctionBegin;
5174cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
518a30f8f8cSSatish Balay     while (1) {
519a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
520a30f8f8cSSatish Balay       if (!flg) break;
521a30f8f8cSSatish Balay 
522a30f8f8cSSatish Balay       for (i=0; i<n;) {
523a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
52426fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
52526fbe8dcSKarl Rupp           if (row[j] != rstart) break;
52626fbe8dcSKarl Rupp         }
527a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
528a30f8f8cSSatish Balay         else       ncols = n-i;
529a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
530dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
531a30f8f8cSSatish Balay         i    = j;
532a30f8f8cSSatish Balay       }
533a30f8f8cSSatish Balay     }
534a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
535a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
536a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
537a30f8f8cSSatish Balay        restore the original flags */
538a30f8f8cSSatish Balay     r1 = baij->roworiented;
539a30f8f8cSSatish Balay     r2 = a->roworiented;
54091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
54126fbe8dcSKarl Rupp 
542a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
543a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
54426fbe8dcSKarl Rupp 
54591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
546a30f8f8cSSatish Balay     while (1) {
547a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
548a30f8f8cSSatish Balay       if (!flg) break;
549a30f8f8cSSatish Balay 
550a30f8f8cSSatish Balay       for (i=0; i<n;) {
551a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
55226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
55326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
55426fbe8dcSKarl Rupp         }
555a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
556a30f8f8cSSatish Balay         else       ncols = n-i;
557dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
558a30f8f8cSSatish Balay         i    = j;
559a30f8f8cSSatish Balay       }
560a30f8f8cSSatish Balay     }
561a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
56226fbe8dcSKarl Rupp 
563a30f8f8cSSatish Balay     baij->roworiented = r1;
564a30f8f8cSSatish Balay     a->roworiented    = r2;
56526fbe8dcSKarl Rupp 
56691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
567a30f8f8cSSatish Balay   }
568a30f8f8cSSatish Balay 
569a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
570a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
571a30f8f8cSSatish Balay 
572a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
573a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
574a30f8f8cSSatish Balay   /*
575a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
576a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
577a30f8f8cSSatish Balay   */
578a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
579ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
580a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
581ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
582a30f8f8cSSatish Balay     }
583a30f8f8cSSatish Balay   }
584a30f8f8cSSatish Balay 
585a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58640781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
587a30f8f8cSSatish Balay   }
588cd6b891eSBarry Smith   ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr);
589a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
590a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
591a30f8f8cSSatish Balay 
59274ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
59326fbe8dcSKarl Rupp 
594a30f8f8cSSatish Balay   baij->rowvalues = 0;
595a30f8f8cSSatish Balay   PetscFunctionReturn(0);
596a30f8f8cSSatish Balay }
597a30f8f8cSSatish Balay 
598dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
5999804daf3SBarry Smith #include <petscdraw.h>
6004a2ae208SSatish Balay #undef __FUNCT__
6014a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6026849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
603a30f8f8cSSatish Balay {
604a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
605dfbe8321SBarry Smith   PetscErrorCode    ierr;
606d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
6071302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
608ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
609b0a32e0cSBarry Smith   PetscViewer       sviewer;
610f3ef73ceSBarry Smith   PetscViewerFormat format;
611a30f8f8cSSatish Balay 
612a30f8f8cSSatish Balay   PetscFunctionBegin;
613251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
614251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
61532077d6dSBarry Smith   if (iascii) {
616b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
617456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
618a30f8f8cSSatish Balay       MatInfo info;
619ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
620a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6217b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6227b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
623a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
624e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
626e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
627b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6287b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
62907d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
630a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
631a30f8f8cSSatish Balay       PetscFunctionReturn(0);
632fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
634a30f8f8cSSatish Balay       PetscFunctionReturn(0);
635c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
636c1490034SHong Zhang       PetscFunctionReturn(0);
637a30f8f8cSSatish Balay     }
638a30f8f8cSSatish Balay   }
639a30f8f8cSSatish Balay 
640a30f8f8cSSatish Balay   if (isdraw) {
641b0a32e0cSBarry Smith     PetscDraw draw;
642ace3abfcSBarry Smith     PetscBool isnull;
643b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
644b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
645a30f8f8cSSatish Balay   }
646a30f8f8cSSatish Balay 
647a30f8f8cSSatish Balay   if (size == 1) {
6487adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
649a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
650a30f8f8cSSatish Balay   } else {
651a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
652a30f8f8cSSatish Balay     Mat          A;
65365d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65465d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
655d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
656a30f8f8cSSatish Balay     MatScalar    *a;
657a30f8f8cSSatish Balay 
658f204ca49SKris Buschelman     /* Should this be the same type as mat? */
659ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
660a30f8f8cSSatish Balay     if (!rank) {
661f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
662a30f8f8cSSatish Balay     } else {
663f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     }
665f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
6660298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
6672b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
66852e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
669a30f8f8cSSatish Balay 
670a30f8f8cSSatish Balay     /* copy over the A part */
67165d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
672a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
6731302d50aSBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
674a30f8f8cSSatish Balay 
675a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
676e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
67726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
678a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
679e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
680a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
681dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
68226fbe8dcSKarl Rupp           col++;
68326fbe8dcSKarl Rupp           a += bs;
684a30f8f8cSSatish Balay         }
685a30f8f8cSSatish Balay       }
686a30f8f8cSSatish Balay     }
687a30f8f8cSSatish Balay     /* copy over the B part */
68865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68965d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
690a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
691e9f7bc9eSHong Zhang 
692e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
69326fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
694a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
695a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
696a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
697799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
69826fbe8dcSKarl Rupp           col++;
69926fbe8dcSKarl Rupp           a += bs;
700a30f8f8cSSatish Balay         }
701a30f8f8cSSatish Balay       }
702a30f8f8cSSatish Balay     }
703a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     /*
707a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
708b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
709a30f8f8cSSatish Balay     */
710b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71165d70643SHong Zhang     if (!rank) {
7127adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7137566de4bSShri Abhyankar       /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/
7147566de4bSShri Abhyankar       PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ);
715a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
716a30f8f8cSSatish Balay     }
717b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7186bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
719a30f8f8cSSatish Balay   }
720a30f8f8cSSatish Balay   PetscFunctionReturn(0);
721a30f8f8cSSatish Balay }
722a30f8f8cSSatish Balay 
7234a2ae208SSatish Balay #undef __FUNCT__
7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
725dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
726a30f8f8cSSatish Balay {
727dfbe8321SBarry Smith   PetscErrorCode ierr;
728ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
729a30f8f8cSSatish Balay 
730a30f8f8cSSatish Balay   PetscFunctionBegin;
731251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
732251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
733251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
734251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73532077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
736a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
737a30f8f8cSSatish Balay   }
738a30f8f8cSSatish Balay   PetscFunctionReturn(0);
739a30f8f8cSSatish Balay }
740a30f8f8cSSatish Balay 
7414a2ae208SSatish Balay #undef __FUNCT__
7424a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
743dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
744a30f8f8cSSatish Balay {
745a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
746dfbe8321SBarry Smith   PetscErrorCode ierr;
747a30f8f8cSSatish Balay 
748a30f8f8cSSatish Balay   PetscFunctionBegin;
749a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
750d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
751a30f8f8cSSatish Balay #endif
752a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7546bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7556bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
756a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
7576bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
758a30f8f8cSSatish Balay #else
75905b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
760a30f8f8cSSatish Balay #endif
76105b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7626bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7636bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7646bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7656bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7666bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7676bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7686bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7705755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77105b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77205b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7736bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7746bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7756bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
776ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
77705b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
778a30f8f8cSSatish Balay #endif
77959ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78059ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
781899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
782bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
783901853e0SKris Buschelman 
784dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
7850298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",NULL);CHKERRQ(ierr);
7860298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",NULL);CHKERRQ(ierr);
7870298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",NULL);CHKERRQ(ierr);
7880298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",NULL);CHKERRQ(ierr);
7890298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C","",NULL);CHKERRQ(ierr);
790a30f8f8cSSatish Balay   PetscFunctionReturn(0);
791a30f8f8cSSatish Balay }
792a30f8f8cSSatish Balay 
7934a2ae208SSatish Balay #undef __FUNCT__
794547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
795547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
796547795f9SHong Zhang {
797547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
798547795f9SHong Zhang   PetscErrorCode ierr;
799547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
800547795f9SHong Zhang   PetscScalar    *x,*from;
801547795f9SHong Zhang 
802547795f9SHong Zhang   PetscFunctionBegin;
803547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
804e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
805547795f9SHong Zhang 
806547795f9SHong Zhang   /* diagonal part */
807547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
808547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
809547795f9SHong Zhang 
810547795f9SHong Zhang   /* subdiagonal part */
811547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
812547795f9SHong Zhang 
813547795f9SHong Zhang   /* copy x into the vec slvec0 */
814547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
815547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
816547795f9SHong Zhang 
817547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
818547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
819547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
820547795f9SHong Zhang 
821547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
823547795f9SHong Zhang   /* supperdiagonal part */
824547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
825547795f9SHong Zhang   PetscFunctionReturn(0);
826547795f9SHong Zhang }
827547795f9SHong Zhang 
828547795f9SHong Zhang #undef __FUNCT__
829a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
830dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
831a9d4b620SHong Zhang {
832a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
833dfbe8321SBarry Smith   PetscErrorCode ierr;
834d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
835fa22f6d0SBarry Smith   PetscScalar    *x,*from;
836a9d4b620SHong Zhang 
837a9d4b620SHong Zhang   PetscFunctionBegin;
838a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
839e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
840a9d4b620SHong Zhang 
841a9d4b620SHong Zhang   /* diagonal part */
842a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
843fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
844a9d4b620SHong Zhang 
845a9d4b620SHong Zhang   /* subdiagonal part */
846a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
847fc165ae2SBarry Smith 
848a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8491ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8501ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
851a9d4b620SHong Zhang 
852fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
853fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8541ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
855fc165ae2SBarry Smith 
856fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
857ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
858a9d4b620SHong Zhang   /* supperdiagonal part */
859a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
860a9d4b620SHong Zhang   PetscFunctionReturn(0);
861a9d4b620SHong Zhang }
862a9d4b620SHong Zhang 
863a9d4b620SHong Zhang #undef __FUNCT__
86440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
865dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
866a30f8f8cSSatish Balay {
867a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
868dfbe8321SBarry Smith   PetscErrorCode ierr;
8691302d50aSBarry Smith   PetscInt       nt;
870a30f8f8cSSatish Balay 
871a30f8f8cSSatish Balay   PetscFunctionBegin;
872a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
873e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
874e7e72b3dSBarry Smith 
875a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
876e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
87765d70643SHong Zhang 
878ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
879b941877fSHong Zhang   /* do diagonal part */
880b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
881b941877fSHong Zhang   /* do supperdiagonal part */
882ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
883b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
884b941877fSHong Zhang   /* do subdiagonal part */
885b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
886ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
887ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
888a30f8f8cSSatish Balay   PetscFunctionReturn(0);
889a30f8f8cSSatish Balay }
890a30f8f8cSSatish Balay 
8914a2ae208SSatish Balay #undef __FUNCT__
8924a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
893dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
894a30f8f8cSSatish Balay {
895de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
896dfbe8321SBarry Smith   PetscErrorCode ierr;
897d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
898a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
899a9d4b620SHong Zhang 
900a9d4b620SHong Zhang   PetscFunctionBegin;
901a9d4b620SHong Zhang   /*
902ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
903ce94432eSBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A));
904a9d4b620SHong Zhang   */
905a9d4b620SHong Zhang   /* diagonal part */
906a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9072dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
908a9d4b620SHong Zhang 
909a9d4b620SHong Zhang   /* subdiagonal part */
910a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
911a9d4b620SHong Zhang 
912a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9131ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9141ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
915a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9161ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
917a9d4b620SHong Zhang 
918ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9191ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
920ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
921a9d4b620SHong Zhang 
922a9d4b620SHong Zhang   /* supperdiagonal part */
923a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
924a9d4b620SHong Zhang   PetscFunctionReturn(0);
925a9d4b620SHong Zhang }
926a9d4b620SHong Zhang 
927a9d4b620SHong Zhang #undef __FUNCT__
928a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
929dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
930a9d4b620SHong Zhang {
931a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
932dfbe8321SBarry Smith   PetscErrorCode ierr;
933a30f8f8cSSatish Balay 
934a30f8f8cSSatish Balay   PetscFunctionBegin;
935ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
936b941877fSHong Zhang   /* do diagonal part */
937b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
938b941877fSHong Zhang   /* do supperdiagonal part */
939ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
940de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
941de8b6608SHong Zhang 
942b941877fSHong Zhang   /* do subdiagonal part */
943a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
944ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
945ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
946a30f8f8cSSatish Balay   PetscFunctionReturn(0);
947a30f8f8cSSatish Balay }
948a30f8f8cSSatish Balay 
949a30f8f8cSSatish Balay /*
950a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
951a30f8f8cSSatish Balay    diagonal block
952a30f8f8cSSatish Balay */
9534a2ae208SSatish Balay #undef __FUNCT__
9544a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
955dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
956a30f8f8cSSatish Balay {
957a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
958dfbe8321SBarry Smith   PetscErrorCode ierr;
959a30f8f8cSSatish Balay 
960a30f8f8cSSatish Balay   PetscFunctionBegin;
961e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
962a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
963a30f8f8cSSatish Balay   PetscFunctionReturn(0);
964a30f8f8cSSatish Balay }
965a30f8f8cSSatish Balay 
9664a2ae208SSatish Balay #undef __FUNCT__
9674a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
968f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
969a30f8f8cSSatish Balay {
970a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
971dfbe8321SBarry Smith   PetscErrorCode ierr;
972a30f8f8cSSatish Balay 
973a30f8f8cSSatish Balay   PetscFunctionBegin;
974f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
975f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
976a30f8f8cSSatish Balay   PetscFunctionReturn(0);
977a30f8f8cSSatish Balay }
978a30f8f8cSSatish Balay 
9794a2ae208SSatish Balay #undef __FUNCT__
9804a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9811302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
982a30f8f8cSSatish Balay {
983d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
984d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
985d0d4cfc2SHong Zhang   PetscErrorCode ierr;
986d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
987d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
988899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
989d0d4cfc2SHong Zhang 
990a30f8f8cSSatish Balay   PetscFunctionBegin;
991e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
992d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
993d0d4cfc2SHong Zhang 
994d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
995d0d4cfc2SHong Zhang     /*
996d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
997d0d4cfc2SHong Zhang     */
998d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
999d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1000d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1001d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1002d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
100326fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1004d0d4cfc2SHong Zhang     }
100574ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1006d0d4cfc2SHong Zhang   }
1007d0d4cfc2SHong Zhang 
1008e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1009d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1010d0d4cfc2SHong Zhang 
1011d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1012d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1013d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1014d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1015d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1016d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1017d0d4cfc2SHong Zhang 
1018d0d4cfc2SHong Zhang   cmap = mat->garray;
1019d0d4cfc2SHong Zhang   if (v  || idx) {
1020d0d4cfc2SHong Zhang     if (nztot) {
1021d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1022d0d4cfc2SHong Zhang       PetscInt imark = -1;
1023d0d4cfc2SHong Zhang       if (v) {
1024d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1025d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1026d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1027d0d4cfc2SHong Zhang           else break;
1028d0d4cfc2SHong Zhang         }
1029d0d4cfc2SHong Zhang         imark = i;
1030d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1031d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1032d0d4cfc2SHong Zhang       }
1033d0d4cfc2SHong Zhang       if (idx) {
1034d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1035d0d4cfc2SHong Zhang         if (imark > -1) {
1036d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1037d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1038d0d4cfc2SHong Zhang           }
1039d0d4cfc2SHong Zhang         } else {
1040d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
104126fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1042d0d4cfc2SHong Zhang             else break;
1043d0d4cfc2SHong Zhang           }
1044d0d4cfc2SHong Zhang           imark = i;
1045d0d4cfc2SHong Zhang         }
1046d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1047d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1048d0d4cfc2SHong Zhang       }
1049d0d4cfc2SHong Zhang     } else {
1050d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1051d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1052d0d4cfc2SHong Zhang     }
1053d0d4cfc2SHong Zhang   }
1054d0d4cfc2SHong Zhang   *nz  = nztot;
1055d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1056d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1057a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1058a30f8f8cSSatish Balay }
1059a30f8f8cSSatish Balay 
10604a2ae208SSatish Balay #undef __FUNCT__
10614a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10621302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1063a30f8f8cSSatish Balay {
1064a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1065a30f8f8cSSatish Balay 
1066a30f8f8cSSatish Balay   PetscFunctionBegin;
1067e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1068a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1069a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1070a30f8f8cSSatish Balay }
1071a30f8f8cSSatish Balay 
10724a2ae208SSatish Balay #undef __FUNCT__
1073d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1074d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1075d0d4cfc2SHong Zhang {
1076d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1077d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1078d0d4cfc2SHong Zhang 
1079d0d4cfc2SHong Zhang   PetscFunctionBegin;
1080d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1081d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1082d0d4cfc2SHong Zhang }
1083d0d4cfc2SHong Zhang #undef __FUNCT__
1084d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1085d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1086d0d4cfc2SHong Zhang {
1087d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1088d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1089d0d4cfc2SHong Zhang 
1090d0d4cfc2SHong Zhang   PetscFunctionBegin;
1091d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1092d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1093d0d4cfc2SHong Zhang }
1094d0d4cfc2SHong Zhang 
1095d0d4cfc2SHong Zhang #undef __FUNCT__
109699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
109799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
109899cafbc1SBarry Smith {
109999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110099cafbc1SBarry Smith   PetscErrorCode ierr;
110199cafbc1SBarry Smith 
110299cafbc1SBarry Smith   PetscFunctionBegin;
110399cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
110499cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
110599cafbc1SBarry Smith   PetscFunctionReturn(0);
110699cafbc1SBarry Smith }
110799cafbc1SBarry Smith 
110899cafbc1SBarry Smith #undef __FUNCT__
110999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111199cafbc1SBarry Smith {
111299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111399cafbc1SBarry Smith   PetscErrorCode ierr;
111499cafbc1SBarry Smith 
111599cafbc1SBarry Smith   PetscFunctionBegin;
111699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
111799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
111899cafbc1SBarry Smith   PetscFunctionReturn(0);
111999cafbc1SBarry Smith }
112099cafbc1SBarry Smith 
112199cafbc1SBarry Smith #undef __FUNCT__
11224a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1123dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1124a30f8f8cSSatish Balay {
1125a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1126dfbe8321SBarry Smith   PetscErrorCode ierr;
1127a30f8f8cSSatish Balay 
1128a30f8f8cSSatish Balay   PetscFunctionBegin;
1129a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1130a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1131a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1132a30f8f8cSSatish Balay }
1133a30f8f8cSSatish Balay 
11344a2ae208SSatish Balay #undef __FUNCT__
11354a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1136dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1137a30f8f8cSSatish Balay {
1138a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1139a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1140dfbe8321SBarry Smith   PetscErrorCode ierr;
1141a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1142a30f8f8cSSatish Balay 
1143a30f8f8cSSatish Balay   PetscFunctionBegin;
1144d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
114526fbe8dcSKarl Rupp 
1146a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
114726fbe8dcSKarl Rupp 
1148a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1149a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
115026fbe8dcSKarl Rupp 
1151a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
115226fbe8dcSKarl Rupp 
1153a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1154a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1155a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1156a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1157a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1158a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1159a30f8f8cSSatish Balay     info->memory       = isend[3];
1160a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1161a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1162ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
116326fbe8dcSKarl Rupp 
1164a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1165a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1166a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1167a30f8f8cSSatish Balay     info->memory       = irecv[3];
1168a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1169a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1170ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
117126fbe8dcSKarl Rupp 
1172a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1173a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1174a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1175a30f8f8cSSatish Balay     info->memory       = irecv[3];
1176a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1177f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1178a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1179a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1180a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1181a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1182a30f8f8cSSatish Balay }
1183a30f8f8cSSatish Balay 
11844a2ae208SSatish Balay #undef __FUNCT__
11854a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1186ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1187a30f8f8cSSatish Balay {
1188a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1189d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1190dfbe8321SBarry Smith   PetscErrorCode ierr;
1191a30f8f8cSSatish Balay 
1192a30f8f8cSSatish Balay   PetscFunctionBegin;
1193e98b92d7SKris Buschelman   switch (op) {
1194512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1195e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
119628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1197a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1198e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
11994e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12004e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1201e98b92d7SKris Buschelman     break;
1202e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12034e0d8c25SBarry Smith     a->roworiented = flg;
120426fbe8dcSKarl Rupp 
12054e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12064e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1207e98b92d7SKris Buschelman     break;
12084e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1209290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1210e98b92d7SKris Buschelman     break;
1211e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12124e0d8c25SBarry Smith     a->donotstash = flg;
1213e98b92d7SKris Buschelman     break;
1214e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12154e0d8c25SBarry Smith     a->ht_flag = flg;
1216e98b92d7SKris Buschelman     break;
12179a4540c5SBarry Smith   case MAT_HERMITIAN:
1218e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1219eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
122026fbe8dcSKarl Rupp 
1221547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1222eeffb40dSHong Zhang     break;
1223ffa07934SHong Zhang   case MAT_SPD:
1224ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1225ffa07934SHong Zhang     A->spd     = flg;
1226ffa07934SHong Zhang     if (flg) {
1227ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1228ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1229ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1230ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1231ffa07934SHong Zhang     }
1232ffa07934SHong Zhang     break;
123377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1234eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1235eeffb40dSHong Zhang     break;
123677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1237eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1238eeffb40dSHong Zhang     break;
12399a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1240e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1241290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124277e54ba9SKris Buschelman     break;
1243d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12444e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1245d0d4cfc2SHong Zhang     break;
1246d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12474e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1248d0d4cfc2SHong Zhang     break;
1249d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12504e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1251d0d4cfc2SHong Zhang     break;
1252e98b92d7SKris Buschelman   default:
1253e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1254a30f8f8cSSatish Balay   }
1255a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1256a30f8f8cSSatish Balay }
1257a30f8f8cSSatish Balay 
12584a2ae208SSatish Balay #undef __FUNCT__
12598115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1260fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1261a30f8f8cSSatish Balay {
1262dfbe8321SBarry Smith   PetscErrorCode ierr;
12636e111a19SKarl Rupp 
1264a30f8f8cSSatish Balay   PetscFunctionBegin;
1265815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1266999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1267fc4dec0aSBarry Smith   }
12688115998fSBarry Smith   PetscFunctionReturn(0);
1269a30f8f8cSSatish Balay }
1270a30f8f8cSSatish Balay 
12714a2ae208SSatish Balay #undef __FUNCT__
12724a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1273dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1274a30f8f8cSSatish Balay {
1275a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1276a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1277dfbe8321SBarry Smith   PetscErrorCode ierr;
12785e90f9d9SHong Zhang   PetscInt       nv,m,n;
1279ace3abfcSBarry Smith   PetscBool      flg;
1280a30f8f8cSSatish Balay 
1281a30f8f8cSSatish Balay   PetscFunctionBegin;
1282a30f8f8cSSatish Balay   if (ll != rr) {
1283b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1284e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1285a30f8f8cSSatish Balay   }
1286b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1287b3bf805bSHong Zhang 
12885e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1289e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1290b3bf805bSHong Zhang 
12915e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1292e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12935e90f9d9SHong Zhang 
1294ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12955e90f9d9SHong Zhang 
12965e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
12970298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
12985e90f9d9SHong Zhang 
12995e90f9d9SHong Zhang   /* scale the diagonal part */
1300a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1301a30f8f8cSSatish Balay 
13025e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1303ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13040298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1305a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1306a30f8f8cSSatish Balay }
1307a30f8f8cSSatish Balay 
13084a2ae208SSatish Balay #undef __FUNCT__
13094a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1310dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1311a30f8f8cSSatish Balay {
1312f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1313dfbe8321SBarry Smith   PetscErrorCode ierr;
1314a30f8f8cSSatish Balay 
1315a30f8f8cSSatish Balay   PetscFunctionBegin;
1316a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1317a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1318a30f8f8cSSatish Balay }
1319a30f8f8cSSatish Balay 
13206849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1321a30f8f8cSSatish Balay 
13224a2ae208SSatish Balay #undef __FUNCT__
13234a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1324ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1325a30f8f8cSSatish Balay {
1326a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1327a30f8f8cSSatish Balay   Mat            a,b,c,d;
1328ace3abfcSBarry Smith   PetscBool      flg;
1329dfbe8321SBarry Smith   PetscErrorCode ierr;
1330a30f8f8cSSatish Balay 
1331a30f8f8cSSatish Balay   PetscFunctionBegin;
1332a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1333a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1334a30f8f8cSSatish Balay 
1335a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1336abc0a331SBarry Smith   if (flg) {
1337a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1338a30f8f8cSSatish Balay   }
1339ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1340a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1341a30f8f8cSSatish Balay }
1342a30f8f8cSSatish Balay 
13434a2ae208SSatish Balay #undef __FUNCT__
13443c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13453c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13463c896bc6SHong Zhang {
13473c896bc6SHong Zhang   PetscErrorCode ierr;
13483c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
13493c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
13503c896bc6SHong Zhang 
13513c896bc6SHong Zhang   PetscFunctionBegin;
13523c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13533c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1354d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13553c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1356d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13573c896bc6SHong Zhang   } else {
13583c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13593c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13603c896bc6SHong Zhang   }
13613c896bc6SHong Zhang   PetscFunctionReturn(0);
13623c896bc6SHong Zhang }
13633c896bc6SHong Zhang 
13643c896bc6SHong Zhang #undef __FUNCT__
13654994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
13664994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1367273d9f13SBarry Smith {
1368dfbe8321SBarry Smith   PetscErrorCode ierr;
1369273d9f13SBarry Smith 
1370273d9f13SBarry Smith   PetscFunctionBegin;
1371535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1372273d9f13SBarry Smith   PetscFunctionReturn(0);
1373273d9f13SBarry Smith }
1374a5e6ed63SBarry Smith 
13754fe895cdSHong Zhang #undef __FUNCT__
13764fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13774fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13784fe895cdSHong Zhang {
13794fe895cdSHong Zhang   PetscErrorCode ierr;
13804fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
13814fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13824fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13834fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13844fe895cdSHong Zhang 
13854fe895cdSHong Zhang   PetscFunctionBegin;
13864fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13874fe895cdSHong Zhang     PetscScalar alpha = a;
13884fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
13894fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1390c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
1391a83cb05cSBarry Smith     PetscStackCall("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
13924fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
13934fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1394c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
1395a83cb05cSBarry Smith     PetscStackCall("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
13964fe895cdSHong Zhang   } else {
1397d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13984fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1399d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14004fe895cdSHong Zhang   }
14014fe895cdSHong Zhang   PetscFunctionReturn(0);
14024fe895cdSHong Zhang }
14034fe895cdSHong Zhang 
1404a5e6ed63SBarry Smith #undef __FUNCT__
1405a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14061302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1407a5e6ed63SBarry Smith {
14086849ba73SBarry Smith   PetscErrorCode ierr;
14091302d50aSBarry Smith   PetscInt       i;
1410ace3abfcSBarry Smith   PetscBool      flg;
1411a5e6ed63SBarry Smith 
14126849ba73SBarry Smith   PetscFunctionBegin;
1413a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1414a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1415e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1416a5e6ed63SBarry Smith   }
1417a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1418a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1419a5e6ed63SBarry Smith }
1420a5e6ed63SBarry Smith 
1421a5e6ed63SBarry Smith 
1422a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1423*3964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1424a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1425a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1426a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
142797304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1428431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1429431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1430a30f8f8cSSatish Balay                                        0,
1431a30f8f8cSSatish Balay                                        0,
1432a30f8f8cSSatish Balay                                        0,
143397304618SKris Buschelman                                /* 10*/ 0,
1434a30f8f8cSSatish Balay                                        0,
1435a30f8f8cSSatish Balay                                        0,
143641f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1437a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
143897304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1439a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1440a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1441a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1442a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
144397304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1444a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1445a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1446a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1447d519adbfSMatthew Knepley                                /* 24*/ 0,
1448a30f8f8cSSatish Balay                                        0,
1449a30f8f8cSSatish Balay                                        0,
1450a30f8f8cSSatish Balay                                        0,
1451a30f8f8cSSatish Balay                                        0,
14524994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1453b5df2d14SHong Zhang                                        0,
1454a30f8f8cSSatish Balay                                        0,
1455a30f8f8cSSatish Balay                                        0,
1456a30f8f8cSSatish Balay                                        0,
1457d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1458a30f8f8cSSatish Balay                                        0,
1459a30f8f8cSSatish Balay                                        0,
1460a30f8f8cSSatish Balay                                        0,
1461a30f8f8cSSatish Balay                                        0,
1462d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1463a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1464d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1465a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
14663c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1467d519adbfSMatthew Knepley                                /* 44*/ 0,
1468a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1469a30f8f8cSSatish Balay                                        0,
1470a30f8f8cSSatish Balay                                        0,
1471a30f8f8cSSatish Balay                                        0,
1472f73d5cc4SBarry Smith                                /* 49*/ 0,
1473a30f8f8cSSatish Balay                                        0,
1474a30f8f8cSSatish Balay                                        0,
1475a30f8f8cSSatish Balay                                        0,
1476a30f8f8cSSatish Balay                                        0,
1477d519adbfSMatthew Knepley                                /* 54*/ 0,
1478a30f8f8cSSatish Balay                                        0,
1479a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1480a30f8f8cSSatish Balay                                        0,
1481a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
1482d519adbfSMatthew Knepley                                /* 59*/ 0,
1483a30f8f8cSSatish Balay                                        0,
1484a30f8f8cSSatish Balay                                        0,
1485357abbc8SBarry Smith                                        0,
148624d5174aSHong Zhang                                        0,
1487d519adbfSMatthew Knepley                                /* 64*/ 0,
148824d5174aSHong Zhang                                        0,
148924d5174aSHong Zhang                                        0,
149024d5174aSHong Zhang                                        0,
149124d5174aSHong Zhang                                        0,
1492d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
149324d5174aSHong Zhang                                        0,
149497304618SKris Buschelman                                        0,
149597304618SKris Buschelman                                        0,
149697304618SKris Buschelman                                        0,
1497d519adbfSMatthew Knepley                                /* 74*/ 0,
149897304618SKris Buschelman                                        0,
149997304618SKris Buschelman                                        0,
150097304618SKris Buschelman                                        0,
150197304618SKris Buschelman                                        0,
1502d519adbfSMatthew Knepley                                /* 79*/ 0,
150397304618SKris Buschelman                                        0,
150497304618SKris Buschelman                                        0,
150597304618SKris Buschelman                                        0,
15065bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1507d519adbfSMatthew Knepley                                /* 84*/ 0,
1508865e5f61SKris Buschelman                                        0,
1509865e5f61SKris Buschelman                                        0,
1510865e5f61SKris Buschelman                                        0,
1511865e5f61SKris Buschelman                                        0,
1512d519adbfSMatthew Knepley                                /* 89*/ 0,
1513865e5f61SKris Buschelman                                        0,
1514865e5f61SKris Buschelman                                        0,
1515865e5f61SKris Buschelman                                        0,
1516865e5f61SKris Buschelman                                        0,
1517d519adbfSMatthew Knepley                                /* 94*/ 0,
1518865e5f61SKris Buschelman                                        0,
1519865e5f61SKris Buschelman                                        0,
152099cafbc1SBarry Smith                                        0,
152199cafbc1SBarry Smith                                        0,
1522d519adbfSMatthew Knepley                                /* 99*/ 0,
152399cafbc1SBarry Smith                                        0,
152499cafbc1SBarry Smith                                        0,
152599cafbc1SBarry Smith                                        0,
152699cafbc1SBarry Smith                                        0,
1527d519adbfSMatthew Knepley                                /*104*/ 0,
152899cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1529d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1530d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
153195936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
153295936485SShri Abhyankar                                /*109*/ 0,
153395936485SShri Abhyankar                                        0,
153495936485SShri Abhyankar                                        0,
153595936485SShri Abhyankar                                        0,
153695936485SShri Abhyankar                                        0,
153795936485SShri Abhyankar                                /*114*/ 0,
153895936485SShri Abhyankar                                        0,
153995936485SShri Abhyankar                                        0,
154095936485SShri Abhyankar                                        0,
154195936485SShri Abhyankar                                        0,
154295936485SShri Abhyankar                                /*119*/ 0,
154395936485SShri Abhyankar                                        0,
154495936485SShri Abhyankar                                        0,
1545*3964eb88SJed Brown                                        0,
1546*3964eb88SJed Brown                                        0,
1547*3964eb88SJed Brown                                /*124*/ 0,
1548*3964eb88SJed Brown                                        0,
1549*3964eb88SJed Brown                                        0,
1550*3964eb88SJed Brown                                        0,
1551*3964eb88SJed Brown                                        0,
1552*3964eb88SJed Brown                                /*129*/ 0,
1553*3964eb88SJed Brown                                        0,
1554*3964eb88SJed Brown                                        0,
1555*3964eb88SJed Brown                                        0,
1556*3964eb88SJed Brown                                        0,
1557*3964eb88SJed Brown                                /*134*/ 0,
1558*3964eb88SJed Brown                                        0,
1559*3964eb88SJed Brown                                        0,
1560*3964eb88SJed Brown                                        0,
1561*3964eb88SJed Brown                                        0,
1562*3964eb88SJed Brown                                /*139*/ 0,
15635bba2384SShri Abhyankar                                        0
156499cafbc1SBarry Smith };
1565a30f8f8cSSatish Balay 
1566a30f8f8cSSatish Balay 
15674a2ae208SSatish Balay #undef __FUNCT__
15684a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
156911bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1570a30f8f8cSSatish Balay {
1571a30f8f8cSSatish Balay   PetscFunctionBegin;
1572a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1573a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1574a30f8f8cSSatish Balay }
1575a30f8f8cSSatish Balay 
15764a2ae208SSatish Balay #undef __FUNCT__
1577a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1578b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1579a23d5eceSKris Buschelman {
1580a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1581dfbe8321SBarry Smith   PetscErrorCode ierr;
1582535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1583a23d5eceSKris Buschelman 
1584a23d5eceSKris Buschelman   PetscFunctionBegin;
1585a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1586a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1587e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1588e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1589899cda47SBarry Smith 
1590535b19f3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1591535b19f3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
159226283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
159326283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1594e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1595899cda47SBarry Smith 
1596a23d5eceSKris Buschelman   if (d_nnz) {
1597d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1598e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1599a23d5eceSKris Buschelman     }
1600a23d5eceSKris Buschelman   }
1601a23d5eceSKris Buschelman   if (o_nnz) {
1602d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1603e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1604a23d5eceSKris Buschelman     }
1605a23d5eceSKris Buschelman   }
1606a23d5eceSKris Buschelman 
1607a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1608d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1609d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1610c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1611a23d5eceSKris Buschelman 
1612d0f46423SBarry Smith   B->rmap->bs = bs;
1613a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1614a23d5eceSKris Buschelman   b->mbs      = mbs;
1615a23d5eceSKris Buschelman   b->nbs      = mbs;
1616a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1617a23d5eceSKris Buschelman   b->Nbs      = Mbs;
1618a23d5eceSKris Buschelman 
1619a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1620d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1621a23d5eceSKris Buschelman   }
1622d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1623d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1624a23d5eceSKris Buschelman 
1625d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1626d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1627a23d5eceSKris Buschelman 
1628526dfc15SBarry Smith   if (!B->preallocated) {
1629f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1630d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16319c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
163252e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1633f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1634d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16354aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
163652e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1637ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1638526dfc15SBarry Smith   }
1639a23d5eceSKris Buschelman 
1640526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1641526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
164226fbe8dcSKarl Rupp 
1643526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1644a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1645a23d5eceSKris Buschelman }
1646a23d5eceSKris Buschelman 
1647dfb205c3SBarry Smith #undef __FUNCT__
1648dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1649dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1650dfb205c3SBarry Smith {
1651dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1652dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1653dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1654dfb205c3SBarry Smith   PetscScalar    *values=0;
1655dfb205c3SBarry Smith   PetscErrorCode ierr;
1656dfb205c3SBarry Smith 
1657dfb205c3SBarry Smith   PetscFunctionBegin;
1658ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1659dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1660dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1661dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1662dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1663e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1664dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1665dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1666dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1667dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1668dfb205c3SBarry Smith 
1669dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1670dfb205c3SBarry Smith   ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
1671dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1672dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1673dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1674dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1675dfb205c3SBarry Smith     JJ     = jj + ii[i];
1676dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1677dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1678dfb205c3SBarry Smith       JJ++;
1679dfb205c3SBarry Smith     }
1680dfb205c3SBarry Smith     d = 0;
1681dfb205c3SBarry Smith     for (; j<nz; j++) {
1682dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1683dfb205c3SBarry Smith       d++;
1684dfb205c3SBarry Smith     }
1685dfb205c3SBarry Smith     d_nnz[i] = d;
1686dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1687dfb205c3SBarry Smith   }
1688dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1689dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1690dfb205c3SBarry Smith 
1691dfb205c3SBarry Smith   values = (PetscScalar*)V;
1692dfb205c3SBarry Smith   if (!values) {
1693dfb205c3SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
1694dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1695dfb205c3SBarry Smith   }
1696dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1697dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1698dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1699dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1700dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1701dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1702dfb205c3SBarry Smith   }
1703dfb205c3SBarry Smith 
1704dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1705dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1706dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17077827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1708dfb205c3SBarry Smith   PetscFunctionReturn(0);
1709dfb205c3SBarry Smith }
1710dfb205c3SBarry Smith 
1711611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
17128cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1713611f576cSBarry Smith #endif
1714b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
17158cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1716b5e56a35SBarry Smith #endif
17175c9eb25fSBarry Smith 
17180bad9183SKris Buschelman /*MC
1719fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1720828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1721828413b8SBarry Smith    the matrix is stored.
1722828413b8SBarry Smith 
1723828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1724828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17250bad9183SKris Buschelman 
17260bad9183SKris Buschelman    Options Database Keys:
17270bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17280bad9183SKris Buschelman 
17290bad9183SKris Buschelman   Level: beginner
17300bad9183SKris Buschelman 
17310bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17320bad9183SKris Buschelman M*/
17330bad9183SKris Buschelman 
17348cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1735aa5a9175SDahai Guo 
1736a23d5eceSKris Buschelman #undef __FUNCT__
17374a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17388cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1739b5df2d14SHong Zhang {
1740b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1741dfbe8321SBarry Smith   PetscErrorCode ierr;
1742ace3abfcSBarry Smith   PetscBool      flg;
1743b5df2d14SHong Zhang 
1744b5df2d14SHong Zhang   PetscFunctionBegin;
174538f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1746b0a32e0cSBarry Smith   B->data = (void*)b;
1747b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1748b5df2d14SHong Zhang 
1749b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
1750b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
1751b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
1752b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
175326fbe8dcSKarl Rupp 
1754ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
1755ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
1756b5df2d14SHong Zhang 
1757b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1758899cda47SBarry Smith   ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1759b5df2d14SHong Zhang 
1760b5df2d14SHong Zhang   /* build cache for off array entries formed */
1761ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
176226fbe8dcSKarl Rupp 
1763b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
17640298fd71SBarry Smith   b->colmap      = NULL;
17650298fd71SBarry Smith   b->garray      = NULL;
1766b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1767b5df2d14SHong Zhang 
1768b5df2d14SHong Zhang   /* stuff used in block assembly */
1769b5df2d14SHong Zhang   b->barray = 0;
1770b5df2d14SHong Zhang 
1771b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1772b5df2d14SHong Zhang   b->lvec    = 0;
1773b5df2d14SHong Zhang   b->Mvctx   = 0;
177440781036SHong Zhang   b->slvec0  = 0;
177540781036SHong Zhang   b->slvec0b = 0;
177640781036SHong Zhang   b->slvec1  = 0;
177740781036SHong Zhang   b->slvec1a = 0;
177840781036SHong Zhang   b->slvec1b = 0;
177940781036SHong Zhang   b->sMvctx  = 0;
1780b5df2d14SHong Zhang 
1781b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1782b5df2d14SHong Zhang   b->rowindices   = 0;
1783b5df2d14SHong Zhang   b->rowvalues    = 0;
1784b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1785b5df2d14SHong Zhang 
1786b5df2d14SHong Zhang   /* hash table stuff */
1787b5df2d14SHong Zhang   b->ht           = 0;
1788b5df2d14SHong Zhang   b->hd           = 0;
1789b5df2d14SHong Zhang   b->ht_size      = 0;
1790b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1791b5df2d14SHong Zhang   b->ht_fact      = 0;
1792b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1793b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1794b5df2d14SHong Zhang 
17957a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
17967a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
17977a868f3eSHong Zhang 
179859ffdab8SBarry Smith   b->in_loc = 0;
179959ffdab8SBarry Smith   b->v_loc  = 0;
180059ffdab8SBarry Smith   b->n_loc  = 0;
1801ce94432eSBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
18020298fd71SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr);
1803b5df2d14SHong Zhang   if (flg) {
1804f6275e2eSBarry Smith     PetscReal fact = 1.39;
18054e0d8c25SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
18060298fd71SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
1807b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1808b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
18091e2582c4SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1810b5df2d14SHong Zhang   }
18118c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
18128c07d4e3SBarry Smith 
1813b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
181400de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C","MatGetFactor_mpisbaij_pastix",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1815b5e56a35SBarry Smith #endif
1816611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
181700de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C","MatGetFactor_sbaij_mumps",MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1818611f576cSBarry Smith #endif
181900de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C","MatStoreValues_MPISBAIJ",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
182000de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C","MatRetrieveValues_MPISBAIJ",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
182100de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C","MatGetDiagonalBlock_MPISBAIJ",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
182200de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C","MatMPISBAIJSetPreallocation_MPISBAIJ",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
182300de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C","MatMPISBAIJSetPreallocationCSR_MPISBAIJ",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
182400de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C","MatConvert_MPISBAIJ_MPISBSTRM",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
1825aa5a9175SDahai Guo 
182623ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
182723ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
182823ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
182923ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
183026fbe8dcSKarl Rupp 
183117667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1832b5df2d14SHong Zhang   PetscFunctionReturn(0);
1833b5df2d14SHong Zhang }
1834b5df2d14SHong Zhang 
1835209238afSKris Buschelman /*MC
1836002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1837209238afSKris Buschelman 
1838209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1839209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1840209238afSKris Buschelman 
1841209238afSKris Buschelman    Options Database Keys:
1842209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1843209238afSKris Buschelman 
1844209238afSKris Buschelman   Level: beginner
1845209238afSKris Buschelman 
1846209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1847209238afSKris Buschelman M*/
1848209238afSKris Buschelman 
18494a2ae208SSatish Balay #undef __FUNCT__
18504a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1851b5df2d14SHong Zhang /*@C
1852b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1853b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1854b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1855b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1856b5df2d14SHong Zhang 
1857b5df2d14SHong Zhang    Collective on Mat
1858b5df2d14SHong Zhang 
1859b5df2d14SHong Zhang    Input Parameters:
1860b5df2d14SHong Zhang +  A - the matrix
1861b5df2d14SHong Zhang .  bs   - size of blockk
1862b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1863b5df2d14SHong Zhang            submatrix  (same for all local rows)
1864b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18656d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18660298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
186795742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1868b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1869b5df2d14SHong Zhang            submatrix (same for all local rows).
1870b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1871c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
18720298fd71SBarry Smith            (possibly different for each block row) or NULL.
1873b5df2d14SHong Zhang 
1874b5df2d14SHong Zhang 
1875b5df2d14SHong Zhang    Options Database Keys:
1876b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1877b5df2d14SHong Zhang                      block calculations (much slower)
1878b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1879b5df2d14SHong Zhang 
1880b5df2d14SHong Zhang    Notes:
1881b5df2d14SHong Zhang 
1882b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1883b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1884b5df2d14SHong Zhang 
188549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
188649a6f317SBarry Smith 
1887b5df2d14SHong Zhang    Storage Information:
1888b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1889b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1890b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1891b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1892b5df2d14SHong Zhang 
1893b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1894b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
18950298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
1896b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1897b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1898b5df2d14SHong Zhang 
1899aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1900aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1901aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1902aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1903aa95bbe8SBarry Smith 
1904b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1905b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1906b5df2d14SHong Zhang 
1907b5df2d14SHong Zhang .vb
1908b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1909b5df2d14SHong Zhang           -------------------
1910c2fc9fa9SBarry Smith    row 3  |  . . . d d d o o o o o o
1911c2fc9fa9SBarry Smith    row 4  |  . . . d d d o o o o o o
1912c2fc9fa9SBarry Smith    row 5  |  . . . d d d o o o o o o
1913b5df2d14SHong Zhang           -------------------
1914b5df2d14SHong Zhang .ve
1915b5df2d14SHong Zhang 
1916b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1917b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19186d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19196d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1920b5df2d14SHong Zhang 
19216d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19226d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1923c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
1924c2fc9fa9SBarry Smith 
1925b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1926b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1927b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1928b5df2d14SHong Zhang    matrices.
1929b5df2d14SHong Zhang 
1930b5df2d14SHong Zhang    Level: intermediate
1931b5df2d14SHong Zhang 
1932b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1933b5df2d14SHong Zhang 
1934ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
1935b5df2d14SHong Zhang @*/
19367087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1937b5df2d14SHong Zhang {
19384ac538c5SBarry Smith   PetscErrorCode ierr;
1939b5df2d14SHong Zhang 
1940b5df2d14SHong Zhang   PetscFunctionBegin;
19416ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
19426ba663aaSJed Brown   PetscValidType(B,1);
19436ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
19444ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1945b5df2d14SHong Zhang   PetscFunctionReturn(0);
1946b5df2d14SHong Zhang }
1947b5df2d14SHong Zhang 
19484a2ae208SSatish Balay #undef __FUNCT__
194969b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
1950a30f8f8cSSatish Balay /*@C
195169b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1952a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1953a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1954a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1955a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1956a30f8f8cSSatish Balay 
1957a30f8f8cSSatish Balay    Collective on MPI_Comm
1958a30f8f8cSSatish Balay 
1959a30f8f8cSSatish Balay    Input Parameters:
1960a30f8f8cSSatish Balay +  comm - MPI communicator
1961a30f8f8cSSatish Balay .  bs   - size of blockk
1962a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1963a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1964a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1965a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1966a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1967a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1968a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1969a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1970a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1971a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1972a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19736d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19740298fd71SBarry Smith            (possibly different for each block block row) or NULL.
197595742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
197695742e49SBarry Smith            set its value even if it is zero.
1977a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1978a30f8f8cSSatish Balay            submatrix (same for all local rows).
1979a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1980a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
19810298fd71SBarry Smith            each block row) or NULL.
1982a30f8f8cSSatish Balay 
1983a30f8f8cSSatish Balay    Output Parameter:
1984a30f8f8cSSatish Balay .  A - the matrix
1985a30f8f8cSSatish Balay 
1986a30f8f8cSSatish Balay    Options Database Keys:
1987a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1988a30f8f8cSSatish Balay                      block calculations (much slower)
1989a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1990a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1991a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1992a30f8f8cSSatish Balay 
1993175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1994ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1995175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1996175b88e8SBarry Smith 
1997a30f8f8cSSatish Balay    Notes:
1998d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19996d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2000d1be2dadSMatthew Knepley 
2001a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2002a30f8f8cSSatish Balay    (possibly both).
2003a30f8f8cSSatish Balay 
2004a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2005a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2006a30f8f8cSSatish Balay 
200749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
200849a6f317SBarry Smith 
2009a30f8f8cSSatish Balay    Storage Information:
2010a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2011a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2012a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2013a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2014a30f8f8cSSatish Balay 
2015a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2016a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
20170298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2018a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2019a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2020a30f8f8cSSatish Balay 
2021a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2022a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2023a30f8f8cSSatish Balay 
2024a30f8f8cSSatish Balay .vb
2025a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2026a30f8f8cSSatish Balay           -------------------
2027c2fc9fa9SBarry Smith    row 3  |  . . . d d d o o o o o o
2028c2fc9fa9SBarry Smith    row 4  |  . . . d d d o o o o o o
2029c2fc9fa9SBarry Smith    row 5  |  . . . d d d o o o o o o
2030a30f8f8cSSatish Balay           -------------------
2031a30f8f8cSSatish Balay .ve
2032a30f8f8cSSatish Balay 
2033a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2034a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20356d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20366d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2037a30f8f8cSSatish Balay 
20386d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20396d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2040a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2041a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2042a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2043a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2044a30f8f8cSSatish Balay    matrices.
2045a30f8f8cSSatish Balay 
2046a30f8f8cSSatish Balay    Level: intermediate
2047a30f8f8cSSatish Balay 
2048a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2049a30f8f8cSSatish Balay 
205069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2051a30f8f8cSSatish Balay @*/
2052a30f8f8cSSatish Balay 
205369b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2054a30f8f8cSSatish Balay {
20556849ba73SBarry Smith   PetscErrorCode ierr;
20561302d50aSBarry Smith   PetscMPIInt    size;
2057a30f8f8cSSatish Balay 
2058a30f8f8cSSatish Balay   PetscFunctionBegin;
2059f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2060f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2061273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2062273d9f13SBarry Smith   if (size > 1) {
2063b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2064b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2065273d9f13SBarry Smith   } else {
2066273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2067273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2068273d9f13SBarry Smith   }
2069a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2070a30f8f8cSSatish Balay }
2071a30f8f8cSSatish Balay 
2072a30f8f8cSSatish Balay 
20734a2ae208SSatish Balay #undef __FUNCT__
20744a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20756849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2076a30f8f8cSSatish Balay {
2077a30f8f8cSSatish Balay   Mat            mat;
2078a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2079dfbe8321SBarry Smith   PetscErrorCode ierr;
2080d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2081387bc808SHong Zhang   PetscScalar    *array;
2082a30f8f8cSSatish Balay 
2083a30f8f8cSSatish Balay   PetscFunctionBegin;
2084a30f8f8cSSatish Balay   *newmat = 0;
208526fbe8dcSKarl Rupp 
2086ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2087d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20887adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20891d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
20901e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
20911e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2092e1b6402fSHong Zhang 
2093d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2094273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
209582327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20967fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20977fff6886SHong Zhang 
2098b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2099a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2100a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2101a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2102a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2103a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2104a30f8f8cSSatish Balay 
2105899cda47SBarry Smith 
2106a30f8f8cSSatish Balay   a->size         = oldmat->size;
2107a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2108a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2109a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2110a30f8f8cSSatish Balay   a->rowindices   = 0;
2111a30f8f8cSSatish Balay   a->rowvalues    = 0;
2112a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2113a30f8f8cSSatish Balay   a->barray       = 0;
2114899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2115899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2116899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2117899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2118a30f8f8cSSatish Balay 
2119a30f8f8cSSatish Balay   /* hash table stuff */
2120a30f8f8cSSatish Balay   a->ht           = 0;
2121a30f8f8cSSatish Balay   a->hd           = 0;
2122a30f8f8cSSatish Balay   a->ht_size      = 0;
2123a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2124a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2125a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2126a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2127a30f8f8cSSatish Balay 
2128899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2129a30f8f8cSSatish Balay   if (oldmat->colmap) {
2130a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2131a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2132a30f8f8cSSatish Balay #else
21331302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
213452e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21351302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2136a30f8f8cSSatish Balay #endif
2137a30f8f8cSSatish Balay   } else a->colmap = 0;
2138387bc808SHong Zhang 
2139a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21401302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
214152e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21421302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2143a30f8f8cSSatish Balay   } else a->garray = 0;
2144a30f8f8cSSatish Balay 
2145ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2146a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
214752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2148a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
214952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
215082327fa8SHong Zhang 
215182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
215252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
215382327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
215452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2155387bc808SHong Zhang 
2156387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21571ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2158778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2159778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21601ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21611ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2162778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21631ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
216452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
216552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
216652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
216752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
216852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2169387bc808SHong Zhang 
2170387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2171387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2172387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
217352e6d16bSBarry Smith   ierr      = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
217482327fa8SHong Zhang 
2175a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
217652e6d16bSBarry Smith   ierr    = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2177a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
217852e6d16bSBarry Smith   ierr    = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2179140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay   *newmat = mat;
2181a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2182a30f8f8cSSatish Balay }
2183a30f8f8cSSatish Balay 
21844a2ae208SSatish Balay #undef __FUNCT__
21855bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2186112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
218795936485SShri Abhyankar {
218895936485SShri Abhyankar   PetscErrorCode ierr;
218995936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
219095936485SShri Abhyankar   PetscScalar    *vals,*buf;
2191ce94432eSBarry Smith   MPI_Comm       comm;
219295936485SShri Abhyankar   MPI_Status     status;
2193adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2194adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
219595936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
219695936485SShri Abhyankar   PetscInt       bs       =1,Mbs,mbs,extra_rows;
219795936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
219895936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
219995936485SShri Abhyankar   int            fd;
220095936485SShri Abhyankar 
220195936485SShri Abhyankar   PetscFunctionBegin;
2202ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
22030298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
22040298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
220595936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
220695936485SShri Abhyankar 
220795936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
220895936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
220995936485SShri Abhyankar   if (!rank) {
221095936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
221195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
221295936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
221395936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
221495936485SShri Abhyankar   }
221595936485SShri Abhyankar 
221695936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
221795936485SShri Abhyankar 
221895936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
221926fbe8dcSKarl Rupp   M    = header[1];
222026fbe8dcSKarl Rupp   N    = header[2];
222195936485SShri Abhyankar 
222295936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
222395936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
222495936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
222595936485SShri Abhyankar 
222695936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
222795936485SShri Abhyankar   if (sizesset) {
222895936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
222995936485SShri Abhyankar   }
2230abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2231abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
223295936485SShri Abhyankar 
223395936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
223495936485SShri Abhyankar 
223595936485SShri Abhyankar   /*
223695936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
223795936485SShri Abhyankar      divisible by the blocksize
223895936485SShri Abhyankar   */
223995936485SShri Abhyankar   Mbs        = M/bs;
224095936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
224195936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
224295936485SShri Abhyankar   else                  Mbs++;
224395936485SShri Abhyankar   if (extra_rows &&!rank) {
224495936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
224595936485SShri Abhyankar   }
224695936485SShri Abhyankar 
224795936485SShri Abhyankar   /* determine ownership of all rows */
224895936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
224995936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
225095936485SShri Abhyankar     m   = mbs*bs;
225195936485SShri Abhyankar   } else { /* User Set */
225295936485SShri Abhyankar     m   = newmat->rmap->n;
225395936485SShri Abhyankar     mbs = m/bs;
225495936485SShri Abhyankar   }
225595936485SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
22564dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
225795936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
225895936485SShri Abhyankar   rowners[0] = 0;
225995936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
226095936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
226195936485SShri Abhyankar   rstart = rowners[rank];
226295936485SShri Abhyankar   rend   = rowners[rank+1];
226395936485SShri Abhyankar 
226495936485SShri Abhyankar   /* distribute row lengths to all processors */
2265adcec1e5SJed Brown   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
226695936485SShri Abhyankar   if (!rank) {
226795936485SShri Abhyankar     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
226895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
226995936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
227095936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
227195936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
227295936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
227395936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
227495936485SShri Abhyankar   } else {
227595936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
227695936485SShri Abhyankar   }
227795936485SShri Abhyankar 
227895936485SShri Abhyankar   if (!rank) {   /* procs[0] */
227995936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
228095936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
228195936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
228295936485SShri Abhyankar     for (i=0; i<size; i++) {
228395936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
228495936485SShri Abhyankar         procsnz[i] += rowlengths[j];
228595936485SShri Abhyankar       }
228695936485SShri Abhyankar     }
228795936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
228895936485SShri Abhyankar 
228995936485SShri Abhyankar     /* determine max buffer needed and allocate it */
229095936485SShri Abhyankar     maxnz = 0;
229195936485SShri Abhyankar     for (i=0; i<size; i++) {
229295936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
229395936485SShri Abhyankar     }
229495936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
229595936485SShri Abhyankar 
229695936485SShri Abhyankar     /* read in my part of the matrix column indices  */
229795936485SShri Abhyankar     nz     = procsnz[0];
229895936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
229995936485SShri Abhyankar     mycols = ibuf;
230095936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
230195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
230226fbe8dcSKarl Rupp     if (size == 1) {
230326fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
230426fbe8dcSKarl Rupp     }
230595936485SShri Abhyankar 
230695936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
230795936485SShri Abhyankar     for (i=1; i<size-1; i++) {
230895936485SShri Abhyankar       nz   = procsnz[i];
230995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
231095936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
231195936485SShri Abhyankar     }
231295936485SShri Abhyankar     /* read in the stuff for the last proc */
231395936485SShri Abhyankar     if (size != 1) {
231495936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
231595936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
231695936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
231795936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
231895936485SShri Abhyankar     }
231995936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
232095936485SShri Abhyankar   } else {  /* procs[i], i>0 */
232195936485SShri Abhyankar     /* determine buffer space needed for message */
232295936485SShri Abhyankar     nz = 0;
232326fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
232495936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
232595936485SShri Abhyankar     mycols = ibuf;
232695936485SShri Abhyankar     /* receive message of column indices*/
232795936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
232895936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
232995936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
233095936485SShri Abhyankar   }
233195936485SShri Abhyankar 
233295936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
233395936485SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
233495936485SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
233595936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
233695936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
233795936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
233895936485SShri Abhyankar   rowcount = 0;
233995936485SShri Abhyankar   nzcount  = 0;
234095936485SShri Abhyankar   for (i=0; i<mbs; i++) {
234195936485SShri Abhyankar     dcount  = 0;
234295936485SShri Abhyankar     odcount = 0;
234395936485SShri Abhyankar     for (j=0; j<bs; j++) {
234495936485SShri Abhyankar       kmax = locrowlens[rowcount];
234595936485SShri Abhyankar       for (k=0; k<kmax; k++) {
234695936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
234795936485SShri Abhyankar         if (!mask[tmp]) {
234895936485SShri Abhyankar           mask[tmp] = 1;
234995936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
235095936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
235195936485SShri Abhyankar         }
235295936485SShri Abhyankar       }
235395936485SShri Abhyankar       rowcount++;
235495936485SShri Abhyankar     }
235595936485SShri Abhyankar 
235695936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
235795936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
235895936485SShri Abhyankar 
235995936485SShri Abhyankar     /* zero out the mask elements we set */
236095936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
236195936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
236295936485SShri Abhyankar   }
236395936485SShri Abhyankar   if (!sizesset) {
236495936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
236595936485SShri Abhyankar   }
236695936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
23676816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
236895936485SShri Abhyankar 
236995936485SShri Abhyankar   if (!rank) {
237095936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
237195936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
237295936485SShri Abhyankar     nz     = procsnz[0];
237395936485SShri Abhyankar     vals   = buf;
237495936485SShri Abhyankar     mycols = ibuf;
237595936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
237695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
237726fbe8dcSKarl Rupp     if (size == 1) {
237826fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
237926fbe8dcSKarl Rupp     }
238095936485SShri Abhyankar 
238195936485SShri Abhyankar     /* insert into matrix */
238295936485SShri Abhyankar     jj = rstart*bs;
238395936485SShri Abhyankar     for (i=0; i<m; i++) {
238495936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
238595936485SShri Abhyankar       mycols += locrowlens[i];
238695936485SShri Abhyankar       vals   += locrowlens[i];
238795936485SShri Abhyankar       jj++;
238895936485SShri Abhyankar     }
238995936485SShri Abhyankar 
239095936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
239195936485SShri Abhyankar     for (i=1; i<size-1; i++) {
239295936485SShri Abhyankar       nz   = procsnz[i];
239395936485SShri Abhyankar       vals = buf;
239495936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
239595936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
239695936485SShri Abhyankar     }
239795936485SShri Abhyankar     /* the last proc */
239895936485SShri Abhyankar     if (size != 1) {
239995936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
240095936485SShri Abhyankar       vals = buf;
240195936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
240295936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
240395936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
240495936485SShri Abhyankar     }
240595936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
240695936485SShri Abhyankar 
240795936485SShri Abhyankar   } else {
240895936485SShri Abhyankar     /* receive numeric values */
240995936485SShri Abhyankar     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
241095936485SShri Abhyankar 
241195936485SShri Abhyankar     /* receive message of values*/
241295936485SShri Abhyankar     vals   = buf;
241395936485SShri Abhyankar     mycols = ibuf;
241495936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
241595936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
241695936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
241795936485SShri Abhyankar 
241895936485SShri Abhyankar     /* insert into matrix */
241995936485SShri Abhyankar     jj = rstart*bs;
242095936485SShri Abhyankar     for (i=0; i<m; i++) {
242195936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
242295936485SShri Abhyankar       mycols += locrowlens[i];
242395936485SShri Abhyankar       vals   += locrowlens[i];
242495936485SShri Abhyankar       jj++;
242595936485SShri Abhyankar     }
242695936485SShri Abhyankar   }
242795936485SShri Abhyankar 
242895936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
242995936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
243095936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
243195936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
243295936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
243395936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
243495936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
243595936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
243695936485SShri Abhyankar   PetscFunctionReturn(0);
243795936485SShri Abhyankar }
243895936485SShri Abhyankar 
243995936485SShri Abhyankar #undef __FUNCT__
24404a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2441dcf5cc72SBarry Smith /*XXXXX@
2442a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2443a30f8f8cSSatish Balay 
2444a30f8f8cSSatish Balay    Input Parameters:
2445a30f8f8cSSatish Balay .  mat  - the matrix
2446a30f8f8cSSatish Balay .  fact - factor
2447a30f8f8cSSatish Balay 
2448c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2449a30f8f8cSSatish Balay 
2450a30f8f8cSSatish Balay    Level: advanced
2451a30f8f8cSSatish Balay 
2452a30f8f8cSSatish Balay   Notes:
2453a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2454a30f8f8cSSatish Balay 
2455a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2456a30f8f8cSSatish Balay 
2457a30f8f8cSSatish Balay .seealso: MatSetOption()
2458dcf5cc72SBarry Smith @XXXXX*/
2459dcf5cc72SBarry Smith 
246024d5174aSHong Zhang 
24614a2ae208SSatish Balay #undef __FUNCT__
2462985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2463985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
246424d5174aSHong Zhang {
246524d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2466f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2467ca54ac64SHong Zhang   PetscReal      atmp;
246887828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2469dfbe8321SBarry Smith   PetscErrorCode ierr;
24701302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24711302d50aSBarry Smith   PetscMPIInt    rank,size;
24721302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
247387828ca2SBarry Smith   PetscScalar    *va;
24748a1c53f2SBarry Smith   MatScalar      *ba;
2475f4c0e9e4SHong Zhang   MPI_Status     stat;
247624d5174aSHong Zhang 
247724d5174aSHong Zhang   PetscFunctionBegin;
2478e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
24790298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
24801ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2481f4c0e9e4SHong Zhang 
2482ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2483ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2484f4c0e9e4SHong Zhang 
2485d0f46423SBarry Smith   bs  = A->rmap->bs;
2486f4c0e9e4SHong Zhang   mbs = a->mbs;
2487f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2488f4c0e9e4SHong Zhang   ba  = b->a;
2489f4c0e9e4SHong Zhang   bi  = b->i;
2490f4c0e9e4SHong Zhang   bj  = b->j;
2491f4c0e9e4SHong Zhang 
2492f4c0e9e4SHong Zhang   /* find ownerships */
2493d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2494f4c0e9e4SHong Zhang 
2495f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
249682502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2497ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2498f4c0e9e4SHong Zhang 
2499f4c0e9e4SHong Zhang   /* row_max for B */
2500b8475685SHong Zhang   if (rank != size-1) {
2501f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2502f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2503f4c0e9e4SHong Zhang       brow  = bs*i;
2504f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2505f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2506f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2507ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
250804d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2509f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2510f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2511ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2512ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2513f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2514f4c0e9e4SHong Zhang           }
2515f4c0e9e4SHong Zhang         }
2516f4c0e9e4SHong Zhang         bj++;
2517f4c0e9e4SHong Zhang       }
2518f4c0e9e4SHong Zhang     }
2519f4c0e9e4SHong Zhang 
2520f4c0e9e4SHong Zhang     /* send values to its owners */
2521f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2522f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2523ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2524ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2525ca54ac64SHong Zhang     }
2526f4c0e9e4SHong Zhang   }
2527f4c0e9e4SHong Zhang 
2528f4c0e9e4SHong Zhang   /* receive values */
2529ca54ac64SHong Zhang   if (rank) {
2530f4c0e9e4SHong Zhang     rvalues = work;
2531ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2532f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2533ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2534f4c0e9e4SHong Zhang       /* process values */
2535f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2536ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2537f4c0e9e4SHong Zhang       }
2538f4c0e9e4SHong Zhang     }
2539ca54ac64SHong Zhang   }
2540f4c0e9e4SHong Zhang 
25411ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2542ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
254324d5174aSHong Zhang   PetscFunctionReturn(0);
254424d5174aSHong Zhang }
25452798e883SHong Zhang 
25462798e883SHong Zhang #undef __FUNCT__
254741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
254841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25492798e883SHong Zhang {
25502798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2551dfbe8321SBarry Smith   PetscErrorCode    ierr;
2552d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25533649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2554ffe4fb16SHong Zhang   Vec               bb1;
25553649974fSBarry Smith   const PetscScalar *b;
2556ffe4fb16SHong Zhang 
2557ffe4fb16SHong Zhang   PetscFunctionBegin;
2558e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2559e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2560ffe4fb16SHong Zhang 
2561a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
256241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2563a2b30743SBarry Smith     PetscFunctionReturn(0);
2564a2b30743SBarry Smith   }
2565a2b30743SBarry Smith 
2566ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2567ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
256841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2569ffe4fb16SHong Zhang       its--;
2570ffe4fb16SHong Zhang     }
2571ffe4fb16SHong Zhang 
2572ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2573ffe4fb16SHong Zhang     while (its--) {
2574ffe4fb16SHong Zhang 
2575ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2576ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2577ffe4fb16SHong Zhang 
2578ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25791ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25801ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2581ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25821ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2583ffe4fb16SHong Zhang 
2584efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2585ffe4fb16SHong Zhang 
2586ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25871ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25883649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2589ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25901ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2591ffe4fb16SHong Zhang 
2592ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2593fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2594ffe4fb16SHong Zhang 
2595ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25961ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2597a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2598ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2599ffe4fb16SHong Zhang 
2600ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2601ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2602ffe4fb16SHong Zhang 
2603ffe4fb16SHong Zhang       /* local diagonal sweep */
260441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2605ffe4fb16SHong Zhang     }
26066bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2607fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
260841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2609fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
261041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2611fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2612fa22f6d0SBarry Smith     Vec               xx1;
2613ace3abfcSBarry Smith     PetscBool         hasop;
261420f1ed55SBarry Smith     const PetscScalar *diag;
2615887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
261620f1ed55SBarry Smith     PetscInt          i,n;
2617fa22f6d0SBarry Smith 
2618fa22f6d0SBarry Smith     if (!mat->xx1) {
2619fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2620fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2621fa22f6d0SBarry Smith     }
2622fa22f6d0SBarry Smith     xx1 = mat->xx1;
2623fa22f6d0SBarry Smith     bb1 = mat->bb1;
2624fa22f6d0SBarry Smith 
262541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2626fa22f6d0SBarry Smith 
2627fa22f6d0SBarry Smith     if (!mat->diag) {
2628effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26290298fd71SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2630fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2631fa22f6d0SBarry Smith     }
2632fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2633fa22f6d0SBarry Smith 
2634fa22f6d0SBarry Smith     if (hasop) {
2635fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2636887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
263720f1ed55SBarry Smith     } else {
263820f1ed55SBarry Smith       /*
263920f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
264020f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2641887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
264220f1ed55SBarry Smith       */
264320f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26443649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26453649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
264620f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
264720f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2648887ee2caSBarry Smith       if (omega == 1.0) {
264926fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
265020f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2651887ee2caSBarry Smith       } else {
265226fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2653887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2654887ee2caSBarry Smith       }
265520f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26563649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26573649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
265820f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
265920f1ed55SBarry Smith     }
2660fa22f6d0SBarry Smith 
2661fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2662fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2663fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2664fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2665fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2666fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2667fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2668fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2669fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2670fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2671effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2672fa22f6d0SBarry Smith 
2673fa22f6d0SBarry Smith     /* local sweep */
267441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2675fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2676f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2677ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2678ffe4fb16SHong Zhang }
2679ffe4fb16SHong Zhang 
2680ffe4fb16SHong Zhang #undef __FUNCT__
268141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
268241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2683ffe4fb16SHong Zhang {
2684ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2685dfbe8321SBarry Smith   PetscErrorCode ierr;
26862798e883SHong Zhang   Vec            lvec1,bb1;
26872798e883SHong Zhang 
26882798e883SHong Zhang   PetscFunctionBegin;
2689e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2690e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26912798e883SHong Zhang 
2692c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
26932798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
269441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26952798e883SHong Zhang       its--;
26962798e883SHong Zhang     }
26972798e883SHong Zhang 
26982798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26992798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27002798e883SHong Zhang     while (its--) {
2701ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27022798e883SHong Zhang 
27032798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27042798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2705efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27062798e883SHong Zhang 
2707ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27082798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2709ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27102798e883SHong Zhang 
27112798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2712efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27132798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27142798e883SHong Zhang 
2715ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27162798e883SHong Zhang 
2717c14dc6b6SHong Zhang       /* diagonal sweep */
271841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27192798e883SHong Zhang     }
27206bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27216bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27226bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27232798e883SHong Zhang   PetscFunctionReturn(0);
27242798e883SHong Zhang }
27252798e883SHong Zhang 
2726dfb205c3SBarry Smith #undef __FUNCT__
2727dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2728dfb205c3SBarry Smith /*@
2729dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2730dfb205c3SBarry Smith          CSR format the local rows.
2731dfb205c3SBarry Smith 
2732dfb205c3SBarry Smith    Collective on MPI_Comm
2733dfb205c3SBarry Smith 
2734dfb205c3SBarry Smith    Input Parameters:
2735dfb205c3SBarry Smith +  comm - MPI communicator
2736dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2737dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2738dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2739dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2740dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2741dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2742dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2743dfb205c3SBarry Smith .   i - row indices
2744dfb205c3SBarry Smith .   j - column indices
2745dfb205c3SBarry Smith -   a - matrix values
2746dfb205c3SBarry Smith 
2747dfb205c3SBarry Smith    Output Parameter:
2748dfb205c3SBarry Smith .   mat - the matrix
2749dfb205c3SBarry Smith 
2750dfb205c3SBarry Smith    Level: intermediate
2751dfb205c3SBarry Smith 
2752dfb205c3SBarry Smith    Notes:
2753dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2754dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2755dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2756dfb205c3SBarry Smith 
2757dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2758dfb205c3SBarry Smith 
2759dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2760dfb205c3SBarry Smith 
2761dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
276269b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2763dfb205c3SBarry Smith @*/
27647087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2765dfb205c3SBarry Smith {
2766dfb205c3SBarry Smith   PetscErrorCode ierr;
2767dfb205c3SBarry Smith 
2768dfb205c3SBarry Smith 
2769dfb205c3SBarry Smith   PetscFunctionBegin;
2770f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2771dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2772dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2773dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2774dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2775dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2776dfb205c3SBarry Smith   PetscFunctionReturn(0);
2777dfb205c3SBarry Smith }
2778dfb205c3SBarry Smith 
2779dfb205c3SBarry Smith 
2780dfb205c3SBarry Smith #undef __FUNCT__
2781dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2782dfb205c3SBarry Smith /*@C
2783dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2784dfb205c3SBarry Smith    (the default parallel PETSc format).
2785dfb205c3SBarry Smith 
2786dfb205c3SBarry Smith    Collective on MPI_Comm
2787dfb205c3SBarry Smith 
2788dfb205c3SBarry Smith    Input Parameters:
2789dfb205c3SBarry Smith +  A - the matrix
2790dfb205c3SBarry Smith .  bs - the block size
2791dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2792dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2793dfb205c3SBarry Smith -  v - optional values in the matrix
2794dfb205c3SBarry Smith 
2795dfb205c3SBarry Smith    Level: developer
2796dfb205c3SBarry Smith 
2797dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2798dfb205c3SBarry Smith 
279969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2800dfb205c3SBarry Smith @*/
28017087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2802dfb205c3SBarry Smith {
28034ac538c5SBarry Smith   PetscErrorCode ierr;
2804dfb205c3SBarry Smith 
2805dfb205c3SBarry Smith   PetscFunctionBegin;
28064ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2807dfb205c3SBarry Smith   PetscFunctionReturn(0);
2808dfb205c3SBarry Smith }
2809dfb205c3SBarry Smith 
2810dfb205c3SBarry Smith 
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