xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 3b49f96a08d19738f4d6d5931585bcc3c1253d7a)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
86214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
104a2ae208SSatish Balay #undef __FUNCT__
114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
127087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
13a30f8f8cSSatish Balay {
14f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
15dfbe8321SBarry Smith   PetscErrorCode ierr;
16a30f8f8cSSatish Balay 
17a30f8f8cSSatish Balay   PetscFunctionBegin;
18a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
19a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
20a30f8f8cSSatish Balay   PetscFunctionReturn(0);
21a30f8f8cSSatish Balay }
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
36d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
37a30f8f8cSSatish Balay   { \
38a30f8f8cSSatish Balay  \
39a30f8f8cSSatish Balay     brow = row/bs;  \
40a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
41a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
42a30f8f8cSSatish Balay     bcol = col/bs; \
43a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
44a30f8f8cSSatish Balay     low  = 0; high = nrow; \
45a30f8f8cSSatish Balay     while (high-low > 3) { \
46a30f8f8cSSatish Balay       t = (low+high)/2; \
47a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
48a30f8f8cSSatish Balay       else              low  = t; \
49a30f8f8cSSatish Balay     } \
50a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
51a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
52a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
53a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
54a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
55a30f8f8cSSatish Balay         else                    *bap  = value;  \
56a30f8f8cSSatish Balay         goto a_noinsert; \
57a30f8f8cSSatish Balay       } \
58a30f8f8cSSatish Balay     } \
59a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
60d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
61fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
62a30f8f8cSSatish Balay     N = nrow++ - 1;  \
63a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
64a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
65a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
66a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
67a30f8f8cSSatish Balay     } \
68a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
69a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
70a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
71e56f5c9eSBarry Smith     A->nonzerostate++;\
72a30f8f8cSSatish Balay a_noinsert:; \
73a30f8f8cSSatish Balay     ailen[brow] = nrow; \
74a30f8f8cSSatish Balay   }
75e5e170daSBarry Smith 
76d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
77a30f8f8cSSatish Balay   { \
78a30f8f8cSSatish Balay     brow = row/bs;  \
79a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
80a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
81a30f8f8cSSatish Balay     bcol = col/bs; \
82a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
83a30f8f8cSSatish Balay     low  = 0; high = nrow; \
84a30f8f8cSSatish Balay     while (high-low > 3) { \
85a30f8f8cSSatish Balay       t = (low+high)/2; \
86a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
87a30f8f8cSSatish Balay       else              low  = t; \
88a30f8f8cSSatish Balay     } \
89a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
90a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
91a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
92a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
93a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
94a30f8f8cSSatish Balay         else                    *bap  = value;  \
95a30f8f8cSSatish Balay         goto b_noinsert; \
96a30f8f8cSSatish Balay       } \
97a30f8f8cSSatish Balay     } \
98a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
99d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
100fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
101a30f8f8cSSatish Balay     N = nrow++ - 1;  \
102a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
103a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
104a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
105a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
106a30f8f8cSSatish Balay     } \
107a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
108a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
109a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
110e56f5c9eSBarry Smith     B->nonzerostate++;\
111a30f8f8cSSatish Balay b_noinsert:; \
112a30f8f8cSSatish Balay     bilen[brow] = nrow; \
113a30f8f8cSSatish Balay   }
114a30f8f8cSSatish Balay 
115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
116a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
117a30f8f8cSSatish Balay */
1184a2ae208SSatish Balay #undef __FUNCT__
119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
121a30f8f8cSSatish Balay {
122a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
123a30f8f8cSSatish Balay   MatScalar      value;
124ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
125dfbe8321SBarry Smith   PetscErrorCode ierr;
1261302d50aSBarry Smith   PetscInt       i,j,row,col;
127d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
128d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
129d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   /* Some Variables required in the macro */
132a30f8f8cSSatish Balay   Mat          A     = baij->A;
133a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1341302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
135a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
136a30f8f8cSSatish Balay 
137a30f8f8cSSatish Balay   Mat         B     = baij->B;
138a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1391302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
140a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
141a30f8f8cSSatish Balay 
1421302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1431302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
144a30f8f8cSSatish Balay   MatScalar *ap,*bap;
145a30f8f8cSSatish Balay 
146a30f8f8cSSatish Balay   /* for stash */
1470298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1480298fd71SBarry Smith   MatScalar *v_loc = NULL;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   PetscFunctionBegin;
151a30f8f8cSSatish Balay   if (!baij->donotstash) {
15259ffdab8SBarry Smith     if (n > baij->n_loc) {
15359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
15459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
155785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
156785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15726fbe8dcSKarl Rupp 
15859ffdab8SBarry Smith       baij->n_loc = n;
15959ffdab8SBarry Smith     }
16059ffdab8SBarry Smith     in_loc = baij->in_loc;
16159ffdab8SBarry Smith     v_loc  = baij->v_loc;
162a30f8f8cSSatish Balay   }
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
165a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
167e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
168a30f8f8cSSatish Balay #endif
169a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
170a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
171a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
17201b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
17301b2bd88SHong Zhang           if (a->ignore_ltriangular) {
17401b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
17526fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17601b2bd88SHong Zhang         }
177a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
178a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
179a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
180a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
181db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
182db4deed7SKarl Rupp           else             value = v[i+j*m];
183d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
184a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
185a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
187cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
188a30f8f8cSSatish Balay #endif
189a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
190a30f8f8cSSatish Balay           if (mat->was_assembled) {
191a30f8f8cSSatish Balay             if (!baij->colmap) {
192ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
193a30f8f8cSSatish Balay             }
194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
195a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19671730473SSatish Balay             col  = col - 1;
197a30f8f8cSSatish Balay #else
19871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
199a30f8f8cSSatish Balay #endif
200a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
201ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
202a30f8f8cSSatish Balay               col  =  in[j];
203a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
204a30f8f8cSSatish Balay               B    = baij->B;
205a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
206a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
207a30f8f8cSSatish Balay               ba   = b->a;
20871730473SSatish Balay             } else col += in[j]%bs;
209a30f8f8cSSatish Balay           } else col = in[j];
210db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
211db4deed7SKarl Rupp           else             value = v[i+j*m];
212d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
213a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
214a30f8f8cSSatish Balay         }
215a30f8f8cSSatish Balay       }
216a30f8f8cSSatish Balay     } else {  /* off processor entry */
2174cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
218a30f8f8cSSatish Balay       if (!baij->donotstash) {
2195080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
220a30f8f8cSSatish Balay         n_loc          = 0;
221a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
222f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
223a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
224a30f8f8cSSatish Balay           if (roworiented) {
225a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
226a30f8f8cSSatish Balay           } else {
227a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
228a30f8f8cSSatish Balay           }
229a30f8f8cSSatish Balay           n_loc++;
230a30f8f8cSSatish Balay         }
231b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     }
234a30f8f8cSSatish Balay   }
235a30f8f8cSSatish Balay   PetscFunctionReturn(0);
236a30f8f8cSSatish Balay }
237a30f8f8cSSatish Balay 
2384a2ae208SSatish Balay #undef __FUNCT__
23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined"
24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
24136bd2089SBarry Smith {
24236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
24336bd2089SBarry Smith   PetscErrorCode    ierr;
24436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
24536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
24636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
24736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
24836bd2089SBarry Smith   const PetscScalar *value     = v;
24936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
25036bd2089SBarry Smith 
25136bd2089SBarry Smith   PetscFunctionBegin;
25236bd2089SBarry Smith   if (col < row) {
25336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
25436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
25536bd2089SBarry Smith   }
25636bd2089SBarry Smith   rp   = aj + ai[row];
25736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
25836bd2089SBarry Smith   rmax = imax[row];
25936bd2089SBarry Smith   nrow = ailen[row];
26036bd2089SBarry Smith   value = v;
26136bd2089SBarry Smith   low   = 0;
26236bd2089SBarry Smith   high  = nrow;
26336bd2089SBarry Smith 
26436bd2089SBarry Smith   while (high-low > 7) {
26536bd2089SBarry Smith     t = (low+high)/2;
26636bd2089SBarry Smith     if (rp[t] > col) high = t;
26736bd2089SBarry Smith     else             low  = t;
26836bd2089SBarry Smith   }
26936bd2089SBarry Smith   for (i=low; i<high; i++) {
27036bd2089SBarry Smith     if (rp[i] > col) break;
27136bd2089SBarry Smith     if (rp[i] == col) {
27236bd2089SBarry Smith       bap = ap +  bs2*i;
27336bd2089SBarry Smith       if (roworiented) {
27436bd2089SBarry Smith         if (is == ADD_VALUES) {
27536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
27636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
27736bd2089SBarry Smith               bap[jj] += *value++;
27836bd2089SBarry Smith             }
27936bd2089SBarry Smith           }
28036bd2089SBarry Smith         } else {
28136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
28236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
28336bd2089SBarry Smith               bap[jj] = *value++;
28436bd2089SBarry Smith             }
28536bd2089SBarry Smith           }
28636bd2089SBarry Smith         }
28736bd2089SBarry Smith       } else {
28836bd2089SBarry Smith         if (is == ADD_VALUES) {
28936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29136bd2089SBarry Smith               *bap++ += *value++;
29236bd2089SBarry Smith             }
29336bd2089SBarry Smith           }
29436bd2089SBarry Smith         } else {
29536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29736bd2089SBarry Smith               *bap++  = *value++;
29836bd2089SBarry Smith             }
29936bd2089SBarry Smith           }
30036bd2089SBarry Smith         }
30136bd2089SBarry Smith       }
30236bd2089SBarry Smith       goto noinsert2;
30336bd2089SBarry Smith     }
30436bd2089SBarry Smith   }
30536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
30636bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
30736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
30836bd2089SBarry Smith   N = nrow++ - 1; high++;
30936bd2089SBarry Smith   /* shift up all the later entries in this row */
31036bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
31136bd2089SBarry Smith     rp[ii+1] = rp[ii];
31236bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
31336bd2089SBarry Smith   }
31436bd2089SBarry Smith   if (N >= i) {
31536bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
31636bd2089SBarry Smith   }
31736bd2089SBarry Smith   rp[i] = col;
31836bd2089SBarry Smith   bap   = ap +  bs2*i;
31936bd2089SBarry Smith   if (roworiented) {
32036bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32136bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
32236bd2089SBarry Smith         bap[jj] = *value++;
32336bd2089SBarry Smith       }
32436bd2089SBarry Smith     }
32536bd2089SBarry Smith   } else {
32636bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32736bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
32836bd2089SBarry Smith         *bap++ = *value++;
32936bd2089SBarry Smith       }
33036bd2089SBarry Smith     }
33136bd2089SBarry Smith   }
33236bd2089SBarry Smith   noinsert2:;
33336bd2089SBarry Smith   ailen[row] = nrow;
33436bd2089SBarry Smith   PetscFunctionReturn(0);
33536bd2089SBarry Smith }
33636bd2089SBarry Smith 
33736bd2089SBarry Smith #undef __FUNCT__
33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined"
33936bd2089SBarry Smith /*
34036bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
34136bd2089SBarry Smith */
34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34336bd2089SBarry Smith {
34436bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
34536bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34636bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
34736bd2089SBarry Smith   PetscErrorCode    ierr;
34836bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34936bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
35036bd2089SBarry Smith   const PetscScalar *value     = v;
35136bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35236bd2089SBarry Smith 
35336bd2089SBarry Smith   PetscFunctionBegin;
35436bd2089SBarry Smith   rp   = aj + ai[row];
35536bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35636bd2089SBarry Smith   rmax = imax[row];
35736bd2089SBarry Smith   nrow = ailen[row];
35836bd2089SBarry Smith   low  = 0;
35936bd2089SBarry Smith   high = nrow;
36036bd2089SBarry Smith   value = v;
36136bd2089SBarry Smith   while (high-low > 7) {
36236bd2089SBarry Smith     t = (low+high)/2;
36336bd2089SBarry Smith     if (rp[t] > col) high = t;
36436bd2089SBarry Smith     else             low  = t;
36536bd2089SBarry Smith   }
36636bd2089SBarry Smith   for (i=low; i<high; i++) {
36736bd2089SBarry Smith     if (rp[i] > col) break;
36836bd2089SBarry Smith     if (rp[i] == col) {
36936bd2089SBarry Smith       bap = ap +  bs2*i;
37036bd2089SBarry Smith       if (roworiented) {
37136bd2089SBarry Smith         if (is == ADD_VALUES) {
37236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37336bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37436bd2089SBarry Smith               bap[jj] += *value++;
37536bd2089SBarry Smith             }
37636bd2089SBarry Smith           }
37736bd2089SBarry Smith         } else {
37836bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37936bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38036bd2089SBarry Smith               bap[jj] = *value++;
38136bd2089SBarry Smith             }
38236bd2089SBarry Smith           }
38336bd2089SBarry Smith         }
38436bd2089SBarry Smith       } else {
38536bd2089SBarry Smith         if (is == ADD_VALUES) {
38636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
38736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38836bd2089SBarry Smith               bap[jj] += value[jj];
38936bd2089SBarry Smith             }
39036bd2089SBarry Smith             bap += bs;
39136bd2089SBarry Smith           }
39236bd2089SBarry Smith         } else {
39336bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
39436bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39536bd2089SBarry Smith               bap[jj]  = value[jj];
39636bd2089SBarry Smith             }
39736bd2089SBarry Smith             bap += bs;
39836bd2089SBarry Smith           }
39936bd2089SBarry Smith         }
40036bd2089SBarry Smith       }
40136bd2089SBarry Smith       goto noinsert2;
40236bd2089SBarry Smith     }
40336bd2089SBarry Smith   }
40436bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
40536bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
40636bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40736bd2089SBarry Smith   N = nrow++ - 1; high++;
40836bd2089SBarry Smith   /* shift up all the later entries in this row */
40936bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
41036bd2089SBarry Smith     rp[ii+1] = rp[ii];
41136bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
41236bd2089SBarry Smith   }
41336bd2089SBarry Smith   if (N >= i) {
41436bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
41536bd2089SBarry Smith   }
41636bd2089SBarry Smith   rp[i] = col;
41736bd2089SBarry Smith   bap   = ap +  bs2*i;
41836bd2089SBarry Smith   if (roworiented) {
41936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
42136bd2089SBarry Smith         bap[jj] = *value++;
42236bd2089SBarry Smith       }
42336bd2089SBarry Smith     }
42436bd2089SBarry Smith   } else {
42536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42736bd2089SBarry Smith         *bap++ = *value++;
42836bd2089SBarry Smith       }
42936bd2089SBarry Smith     }
43036bd2089SBarry Smith   }
43136bd2089SBarry Smith   noinsert2:;
43236bd2089SBarry Smith   ailen[row] = nrow;
43336bd2089SBarry Smith   PetscFunctionReturn(0);
43436bd2089SBarry Smith }
43536bd2089SBarry Smith 
43636bd2089SBarry Smith #undef __FUNCT__
437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
43836bd2089SBarry Smith /*
43936bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
44036bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
44136bd2089SBarry Smith */
442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
443a30f8f8cSSatish Balay {
4440880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
445f15d580aSBarry Smith   const MatScalar *value;
446f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
447ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
448dfbe8321SBarry Smith   PetscErrorCode  ierr;
449899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
450899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
451d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
4520880e062SHong Zhang 
453a30f8f8cSSatish Balay   PetscFunctionBegin;
4540880e062SHong Zhang   if (!barray) {
455785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
4560880e062SHong Zhang     baij->barray = barray;
4570880e062SHong Zhang   }
4580880e062SHong Zhang 
4590880e062SHong Zhang   if (roworiented) {
4600880e062SHong Zhang     stepval = (n-1)*bs;
4610880e062SHong Zhang   } else {
4620880e062SHong Zhang     stepval = (m-1)*bs;
4630880e062SHong Zhang   }
4640880e062SHong Zhang   for (i=0; i<m; i++) {
4650880e062SHong Zhang     if (im[i] < 0) continue;
4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
467bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
4680880e062SHong Zhang #endif
4690880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4700880e062SHong Zhang       row = im[i] - rstart;
4710880e062SHong Zhang       for (j=0; j<n; j++) {
472f3f98c53SJed Brown         if (im[i] > in[j]) {
473f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
474e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
475f3f98c53SJed Brown         }
4760880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4770880e062SHong Zhang         if ((roworiented) && (n == 1)) {
478f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4790880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
480f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4810880e062SHong Zhang         } else { /* Here a copy is required */
4820880e062SHong Zhang           if (roworiented) {
4830880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4840880e062SHong Zhang           } else {
4850880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4860880e062SHong Zhang           }
4870880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4880880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4890880e062SHong Zhang               *barray++ = *value++;
4900880e062SHong Zhang             }
4910880e062SHong Zhang           }
4920880e062SHong Zhang           barray -=bs2;
4930880e062SHong Zhang         }
4940880e062SHong Zhang 
4950880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
4960880e062SHong Zhang           col  = in[j] - cstart;
49736bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
49826fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
500bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5010880e062SHong Zhang #endif
5020880e062SHong Zhang         else {
5030880e062SHong Zhang           if (mat->was_assembled) {
5040880e062SHong Zhang             if (!baij->colmap) {
505ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5060880e062SHong Zhang             }
5070880e062SHong Zhang 
5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5101302d50aSBarry Smith             { PetscInt data;
5110880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
512e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5130880e062SHong Zhang             }
5140880e062SHong Zhang #else
515e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5160880e062SHong Zhang #endif
5170880e062SHong Zhang #endif
5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5190880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5200880e062SHong Zhang             col  = (col - 1)/bs;
5210880e062SHong Zhang #else
5220880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5230880e062SHong Zhang #endif
5240880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
525ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5260880e062SHong Zhang               col  = in[j];
5270880e062SHong Zhang             }
52826fbe8dcSKarl Rupp           } else col = in[j];
52936bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
5300880e062SHong Zhang         }
5310880e062SHong Zhang       }
5320880e062SHong Zhang     } else {
533bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
5340880e062SHong Zhang       if (!baij->donotstash) {
5350880e062SHong Zhang         if (roworiented) {
5360880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5370880e062SHong Zhang         } else {
5380880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5390880e062SHong Zhang         }
5400880e062SHong Zhang       }
5410880e062SHong Zhang     }
5420880e062SHong Zhang   }
5430880e062SHong Zhang   PetscFunctionReturn(0);
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5516849ba73SBarry Smith   PetscErrorCode ierr;
552d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
553d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
557e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
558e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
562e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
563e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
565a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data--;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
585a30f8f8cSSatish Balay   }
586a30f8f8cSSatish Balay   PetscFunctionReturn(0);
587a30f8f8cSSatish Balay }
588a30f8f8cSSatish Balay 
5894a2ae208SSatish Balay #undef __FUNCT__
5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
592a30f8f8cSSatish Balay {
593a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
594dfbe8321SBarry Smith   PetscErrorCode ierr;
595a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
596a30f8f8cSSatish Balay 
597a30f8f8cSSatish Balay   PetscFunctionBegin;
598a30f8f8cSSatish Balay   if (baij->size == 1) {
599a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
600a30f8f8cSSatish Balay   } else {
601a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
602785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
603a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
604a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
605a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
606a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
607ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6088f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
609a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6100b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6110b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6120b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6130b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
614899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
615d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6160b8dc8d2SHong Zhang       MatScalar    *v;
6170b8dc8d2SHong Zhang 
618dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
619d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6200b8dc8d2SHong Zhang       /* Amat */
6210b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6220b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6230b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6240b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6250b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6260b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6270b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6280b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6290b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6300b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6310b8dc8d2SHong Zhang               /* non-diagonal block */
6320b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
6330b8dc8d2SHong Zhang             }
6340b8dc8d2SHong Zhang           }
6350b8dc8d2SHong Zhang         }
6360b8dc8d2SHong Zhang       }
6370b8dc8d2SHong Zhang       /* Bmat */
6380b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
6390b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6400b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6410b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
6420b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6430b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
6440b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6450b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6460b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6470b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6480b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
6490b8dc8d2SHong Zhang             }
6500b8dc8d2SHong Zhang           }
6510b8dc8d2SHong Zhang         }
6520b8dc8d2SHong Zhang       }
653ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6540b8dc8d2SHong Zhang       *norm = 0.0;
655d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
6560b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
6570b8dc8d2SHong Zhang       }
65874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
659f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
660a30f8f8cSSatish Balay   }
661a30f8f8cSSatish Balay   PetscFunctionReturn(0);
662a30f8f8cSSatish Balay }
663a30f8f8cSSatish Balay 
6644a2ae208SSatish Balay #undef __FUNCT__
6654a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
666dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
667a30f8f8cSSatish Balay {
668a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
669dfbe8321SBarry Smith   PetscErrorCode ierr;
6701302d50aSBarry Smith   PetscInt       nstash,reallocs;
671a30f8f8cSSatish Balay 
672a30f8f8cSSatish Balay   PetscFunctionBegin;
67326fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
674a30f8f8cSSatish Balay 
675d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
6761e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
677a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6781e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
679a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6801e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
681a30f8f8cSSatish Balay   PetscFunctionReturn(0);
682a30f8f8cSSatish Balay }
683a30f8f8cSSatish Balay 
6844a2ae208SSatish Balay #undef __FUNCT__
6854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
686dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
687a30f8f8cSSatish Balay {
688a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
689a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
6906849ba73SBarry Smith   PetscErrorCode ierr;
69113f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
692e44c0bd4SBarry Smith   PetscInt       *row,*col;
693ace3abfcSBarry Smith   PetscBool      other_disassembled;
69413f74950SBarry Smith   PetscMPIInt    n;
695ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
696a30f8f8cSSatish Balay   MatScalar      *val;
697a30f8f8cSSatish Balay 
69891c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
699a30f8f8cSSatish Balay   PetscFunctionBegin;
7004cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
701a30f8f8cSSatish Balay     while (1) {
702a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
703a30f8f8cSSatish Balay       if (!flg) break;
704a30f8f8cSSatish Balay 
705a30f8f8cSSatish Balay       for (i=0; i<n;) {
706a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
70726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
70826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
70926fbe8dcSKarl Rupp         }
710a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
711a30f8f8cSSatish Balay         else       ncols = n-i;
712a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7134b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
714a30f8f8cSSatish Balay         i    = j;
715a30f8f8cSSatish Balay       }
716a30f8f8cSSatish Balay     }
717a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
718a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
719a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
720a30f8f8cSSatish Balay        restore the original flags */
721a30f8f8cSSatish Balay     r1 = baij->roworiented;
722a30f8f8cSSatish Balay     r2 = a->roworiented;
72391c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
72426fbe8dcSKarl Rupp 
725a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
726a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
72726fbe8dcSKarl Rupp 
72891c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
729a30f8f8cSSatish Balay     while (1) {
730a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
731a30f8f8cSSatish Balay       if (!flg) break;
732a30f8f8cSSatish Balay 
733a30f8f8cSSatish Balay       for (i=0; i<n;) {
734a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
73526fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
73626fbe8dcSKarl Rupp           if (row[j] != rstart) break;
73726fbe8dcSKarl Rupp         }
738a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
739a30f8f8cSSatish Balay         else       ncols = n-i;
7404b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
741a30f8f8cSSatish Balay         i    = j;
742a30f8f8cSSatish Balay       }
743a30f8f8cSSatish Balay     }
744a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
74526fbe8dcSKarl Rupp 
746a30f8f8cSSatish Balay     baij->roworiented = r1;
747a30f8f8cSSatish Balay     a->roworiented    = r2;
74826fbe8dcSKarl Rupp 
74991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
750a30f8f8cSSatish Balay   }
751a30f8f8cSSatish Balay 
752a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
754a30f8f8cSSatish Balay 
755a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
756a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
757a30f8f8cSSatish Balay   /*
758a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
759a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
760a30f8f8cSSatish Balay   */
761a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
762ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
763a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
764ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
765a30f8f8cSSatish Balay     }
766a30f8f8cSSatish Balay   }
767a30f8f8cSSatish Balay 
768a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
76940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
770a30f8f8cSSatish Balay   }
771a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
772a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
773a30f8f8cSSatish Balay 
77474ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77526fbe8dcSKarl Rupp 
776a30f8f8cSSatish Balay   baij->rowvalues = 0;
7774f9cfa9eSBarry Smith 
7784f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
7794f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
780e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
78109e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
782e56f5c9eSBarry Smith   }
783a30f8f8cSSatish Balay   PetscFunctionReturn(0);
784a30f8f8cSSatish Balay }
785a30f8f8cSSatish Balay 
7867da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
787dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
7889804daf3SBarry Smith #include <petscdraw.h>
7894a2ae208SSatish Balay #undef __FUNCT__
7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7916849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
792a30f8f8cSSatish Balay {
793a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
794dfbe8321SBarry Smith   PetscErrorCode    ierr;
795d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
7967da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
797ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
798b0a32e0cSBarry Smith   PetscViewer       sviewer;
799f3ef73ceSBarry Smith   PetscViewerFormat format;
800a30f8f8cSSatish Balay 
801a30f8f8cSSatish Balay   PetscFunctionBegin;
802251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
803251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
80432077d6dSBarry Smith   if (iascii) {
805b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
806456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
807a30f8f8cSSatish Balay       MatInfo info;
808ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
809a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8101575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
8117b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
812a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
813e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
814a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
815e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
816b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8171575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
81807d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
819a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
820a30f8f8cSSatish Balay       PetscFunctionReturn(0);
821fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
82277431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
823a30f8f8cSSatish Balay       PetscFunctionReturn(0);
824c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
825c1490034SHong Zhang       PetscFunctionReturn(0);
826a30f8f8cSSatish Balay     }
827a30f8f8cSSatish Balay   }
828a30f8f8cSSatish Balay 
829a30f8f8cSSatish Balay   if (isdraw) {
830b0a32e0cSBarry Smith     PetscDraw draw;
831ace3abfcSBarry Smith     PetscBool isnull;
832b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
833b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
834a30f8f8cSSatish Balay   }
835a30f8f8cSSatish Balay 
8367da1fb6eSBarry Smith   {
837a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
838a30f8f8cSSatish Balay     Mat          A;
83965d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84065d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
841d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
842a30f8f8cSSatish Balay     MatScalar    *a;
8433e219373SBarry Smith     const char   *matname;
844a30f8f8cSSatish Balay 
845f204ca49SKris Buschelman     /* Should this be the same type as mat? */
846ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
847a30f8f8cSSatish Balay     if (!rank) {
848f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
849a30f8f8cSSatish Balay     } else {
850f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
851a30f8f8cSSatish Balay     }
852f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
8530298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
8542b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
8553bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
856a30f8f8cSSatish Balay 
857a30f8f8cSSatish Balay     /* copy over the A part */
85865d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
859a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
860785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
861a30f8f8cSSatish Balay 
862a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
863e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
86426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
865a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
866e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
867a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
868dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
86926fbe8dcSKarl Rupp           col++;
87026fbe8dcSKarl Rupp           a += bs;
871a30f8f8cSSatish Balay         }
872a30f8f8cSSatish Balay       }
873a30f8f8cSSatish Balay     }
874a30f8f8cSSatish Balay     /* copy over the B part */
87565d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
87665d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
877a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
878e9f7bc9eSHong Zhang 
879e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
88026fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
881a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
882a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
883a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
884799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
88526fbe8dcSKarl Rupp           col++;
88626fbe8dcSKarl Rupp           a += bs;
887a30f8f8cSSatish Balay         }
888a30f8f8cSSatish Balay       }
889a30f8f8cSSatish Balay     }
890a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
891a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
892a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
893a30f8f8cSSatish Balay     /*
894a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
895b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
896a30f8f8cSSatish Balay     */
8973f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
898ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
8993e219373SBarry Smith     if (!rank) {
900ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
9017da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
902a30f8f8cSSatish Balay     }
9033f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9041575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9056bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
906a30f8f8cSSatish Balay   }
907a30f8f8cSSatish Balay   PetscFunctionReturn(0);
908a30f8f8cSSatish Balay }
909a30f8f8cSSatish Balay 
9104a2ae208SSatish Balay #undef __FUNCT__
9114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
912dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
913a30f8f8cSSatish Balay {
914dfbe8321SBarry Smith   PetscErrorCode ierr;
915ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
916a30f8f8cSSatish Balay 
917a30f8f8cSSatish Balay   PetscFunctionBegin;
918251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
919251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
920251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
921251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
92232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
923a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
924a30f8f8cSSatish Balay   }
925a30f8f8cSSatish Balay   PetscFunctionReturn(0);
926a30f8f8cSSatish Balay }
927a30f8f8cSSatish Balay 
9284a2ae208SSatish Balay #undef __FUNCT__
9294a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
930dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
931a30f8f8cSSatish Balay {
932a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
933dfbe8321SBarry Smith   PetscErrorCode ierr;
934a30f8f8cSSatish Balay 
935a30f8f8cSSatish Balay   PetscFunctionBegin;
936a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
937d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
938a30f8f8cSSatish Balay #endif
939a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
940a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
9416bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
9426bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
943a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
9446bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
945a30f8f8cSSatish Balay #else
94605b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
947a30f8f8cSSatish Balay #endif
94805b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
9496bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
9506bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
9516bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
9526bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
9536bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
9546bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
9556bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
9566bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
9575755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
95805b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
95905b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
9606bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
9616bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
9626bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
963ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
96405b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
965a30f8f8cSSatish Balay #endif
96659ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
96759ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
968899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
969bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
970901853e0SKris Buschelman 
971dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
972bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
973bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
974bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
975bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
976bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
9776214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
9786214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
9796214f412SHong Zhang #endif
980a30f8f8cSSatish Balay   PetscFunctionReturn(0);
981a30f8f8cSSatish Balay }
982a30f8f8cSSatish Balay 
9834a2ae208SSatish Balay #undef __FUNCT__
984547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
985547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
986547795f9SHong Zhang {
987547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
988547795f9SHong Zhang   PetscErrorCode    ierr;
989547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
9906de40e93SBarry Smith   PetscScalar       *from;
9916de40e93SBarry Smith   const PetscScalar *x;
992547795f9SHong Zhang 
993547795f9SHong Zhang   PetscFunctionBegin;
994547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
995e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
996547795f9SHong Zhang 
997547795f9SHong Zhang   /* diagonal part */
998547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
999547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1000547795f9SHong Zhang 
1001547795f9SHong Zhang   /* subdiagonal part */
1002547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1003547795f9SHong Zhang 
1004547795f9SHong Zhang   /* copy x into the vec slvec0 */
1005547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10066de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1007547795f9SHong Zhang 
1008547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1009547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
10106de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1011547795f9SHong Zhang 
1012547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1013547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1014547795f9SHong Zhang   /* supperdiagonal part */
1015547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1016547795f9SHong Zhang   PetscFunctionReturn(0);
1017547795f9SHong Zhang }
1018547795f9SHong Zhang 
1019547795f9SHong Zhang #undef __FUNCT__
1020a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
1021dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1022a9d4b620SHong Zhang {
1023a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1024dfbe8321SBarry Smith   PetscErrorCode    ierr;
1025d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1026d9ca1df4SBarry Smith   PetscScalar       *from;
1027d9ca1df4SBarry Smith   const PetscScalar *x;
1028a9d4b620SHong Zhang 
1029a9d4b620SHong Zhang   PetscFunctionBegin;
1030a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1031e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1032a9d4b620SHong Zhang 
1033a9d4b620SHong Zhang   /* diagonal part */
1034a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1035fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1036a9d4b620SHong Zhang 
1037a9d4b620SHong Zhang   /* subdiagonal part */
1038a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1039fc165ae2SBarry Smith 
1040a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10411ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1042d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1043a9d4b620SHong Zhang 
1044fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1045fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1046d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1047fc165ae2SBarry Smith 
1048fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1049ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1050a9d4b620SHong Zhang   /* supperdiagonal part */
1051a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1052a9d4b620SHong Zhang   PetscFunctionReturn(0);
1053a9d4b620SHong Zhang }
1054a9d4b620SHong Zhang 
1055a9d4b620SHong Zhang #undef __FUNCT__
105640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
1057dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1058a30f8f8cSSatish Balay {
1059a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1060dfbe8321SBarry Smith   PetscErrorCode ierr;
10611302d50aSBarry Smith   PetscInt       nt;
1062a30f8f8cSSatish Balay 
1063a30f8f8cSSatish Balay   PetscFunctionBegin;
1064a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1065e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1066e7e72b3dSBarry Smith 
1067a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1068e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
106965d70643SHong Zhang 
1070ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1071b941877fSHong Zhang   /* do diagonal part */
1072b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1073b941877fSHong Zhang   /* do supperdiagonal part */
1074ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1075b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1076b941877fSHong Zhang   /* do subdiagonal part */
1077b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1078ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1079ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1080a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1081a30f8f8cSSatish Balay }
1082a30f8f8cSSatish Balay 
10834a2ae208SSatish Balay #undef __FUNCT__
10844a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1085dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1086a30f8f8cSSatish Balay {
1087de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1088dfbe8321SBarry Smith   PetscErrorCode    ierr;
1089d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1090d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1091d9ca1df4SBarry Smith   const PetscScalar *x;
1092a9d4b620SHong Zhang 
1093a9d4b620SHong Zhang   PetscFunctionBegin;
1094a9d4b620SHong Zhang   /*
1095ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
10960ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1097a9d4b620SHong Zhang   */
1098a9d4b620SHong Zhang   /* diagonal part */
1099a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
11002dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1101a9d4b620SHong Zhang 
1102a9d4b620SHong Zhang   /* subdiagonal part */
1103a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1104a9d4b620SHong Zhang 
1105a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11061ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1107d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1108a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
11091ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1110a9d4b620SHong Zhang 
1111ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1112d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1113ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1114a9d4b620SHong Zhang 
1115a9d4b620SHong Zhang   /* supperdiagonal part */
1116a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1117a9d4b620SHong Zhang   PetscFunctionReturn(0);
1118a9d4b620SHong Zhang }
1119a9d4b620SHong Zhang 
1120a9d4b620SHong Zhang #undef __FUNCT__
1121a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1122dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1123a9d4b620SHong Zhang {
1124a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1125dfbe8321SBarry Smith   PetscErrorCode ierr;
1126a30f8f8cSSatish Balay 
1127a30f8f8cSSatish Balay   PetscFunctionBegin;
1128ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1129b941877fSHong Zhang   /* do diagonal part */
1130b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1131b941877fSHong Zhang   /* do supperdiagonal part */
1132ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1133de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1134de8b6608SHong Zhang 
1135b941877fSHong Zhang   /* do subdiagonal part */
1136a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1137ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1138ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1139a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1140a30f8f8cSSatish Balay }
1141a30f8f8cSSatish Balay 
1142a30f8f8cSSatish Balay /*
1143a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1144a30f8f8cSSatish Balay    diagonal block
1145a30f8f8cSSatish Balay */
11464a2ae208SSatish Balay #undef __FUNCT__
11474a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1148dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1149a30f8f8cSSatish Balay {
1150a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1151dfbe8321SBarry Smith   PetscErrorCode ierr;
1152a30f8f8cSSatish Balay 
1153a30f8f8cSSatish Balay   PetscFunctionBegin;
1154e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1155a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1156a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1157a30f8f8cSSatish Balay }
1158a30f8f8cSSatish Balay 
11594a2ae208SSatish Balay #undef __FUNCT__
11604a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1161f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1162a30f8f8cSSatish Balay {
1163a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1164dfbe8321SBarry Smith   PetscErrorCode ierr;
1165a30f8f8cSSatish Balay 
1166a30f8f8cSSatish Balay   PetscFunctionBegin;
1167f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1168f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1169a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1170a30f8f8cSSatish Balay }
1171a30f8f8cSSatish Balay 
11724a2ae208SSatish Balay #undef __FUNCT__
11734a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11741302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1175a30f8f8cSSatish Balay {
1176d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1177d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1178d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1179d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1180d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1181899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1182d0d4cfc2SHong Zhang 
1183a30f8f8cSSatish Balay   PetscFunctionBegin;
1184e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1185d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1186d0d4cfc2SHong Zhang 
1187d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1188d0d4cfc2SHong Zhang     /*
1189d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1190d0d4cfc2SHong Zhang     */
1191d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1192d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1193d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1194d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1195d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
119626fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1197d0d4cfc2SHong Zhang     }
1198dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1199d0d4cfc2SHong Zhang   }
1200d0d4cfc2SHong Zhang 
1201e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1202d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1203d0d4cfc2SHong Zhang 
1204d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1205d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1206d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1207d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1208d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1209d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1210d0d4cfc2SHong Zhang 
1211d0d4cfc2SHong Zhang   cmap = mat->garray;
1212d0d4cfc2SHong Zhang   if (v  || idx) {
1213d0d4cfc2SHong Zhang     if (nztot) {
1214d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1215d0d4cfc2SHong Zhang       PetscInt imark = -1;
1216d0d4cfc2SHong Zhang       if (v) {
1217d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1218d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1219d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1220d0d4cfc2SHong Zhang           else break;
1221d0d4cfc2SHong Zhang         }
1222d0d4cfc2SHong Zhang         imark = i;
1223d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1224d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1225d0d4cfc2SHong Zhang       }
1226d0d4cfc2SHong Zhang       if (idx) {
1227d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1228d0d4cfc2SHong Zhang         if (imark > -1) {
1229d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1230d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1231d0d4cfc2SHong Zhang           }
1232d0d4cfc2SHong Zhang         } else {
1233d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
123426fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1235d0d4cfc2SHong Zhang             else break;
1236d0d4cfc2SHong Zhang           }
1237d0d4cfc2SHong Zhang           imark = i;
1238d0d4cfc2SHong Zhang         }
1239d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1240d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1241d0d4cfc2SHong Zhang       }
1242d0d4cfc2SHong Zhang     } else {
1243d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1244d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1245d0d4cfc2SHong Zhang     }
1246d0d4cfc2SHong Zhang   }
1247d0d4cfc2SHong Zhang   *nz  = nztot;
1248d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1249d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1250a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1251a30f8f8cSSatish Balay }
1252a30f8f8cSSatish Balay 
12534a2ae208SSatish Balay #undef __FUNCT__
12544a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
12551302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1256a30f8f8cSSatish Balay {
1257a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1258a30f8f8cSSatish Balay 
1259a30f8f8cSSatish Balay   PetscFunctionBegin;
1260e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1261a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1262a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1263a30f8f8cSSatish Balay }
1264a30f8f8cSSatish Balay 
12654a2ae208SSatish Balay #undef __FUNCT__
1266d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1267d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1268d0d4cfc2SHong Zhang {
1269d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1270d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1271d0d4cfc2SHong Zhang 
1272d0d4cfc2SHong Zhang   PetscFunctionBegin;
1273d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1274d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1275d0d4cfc2SHong Zhang }
1276d0d4cfc2SHong Zhang #undef __FUNCT__
1277d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1278d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1279d0d4cfc2SHong Zhang {
1280d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1281d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1282d0d4cfc2SHong Zhang 
1283d0d4cfc2SHong Zhang   PetscFunctionBegin;
1284d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1285d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1286d0d4cfc2SHong Zhang }
1287d0d4cfc2SHong Zhang 
1288d0d4cfc2SHong Zhang #undef __FUNCT__
128999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
129099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
129199cafbc1SBarry Smith {
129299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
129399cafbc1SBarry Smith   PetscErrorCode ierr;
129499cafbc1SBarry Smith 
129599cafbc1SBarry Smith   PetscFunctionBegin;
129699cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
129799cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
129899cafbc1SBarry Smith   PetscFunctionReturn(0);
129999cafbc1SBarry Smith }
130099cafbc1SBarry Smith 
130199cafbc1SBarry Smith #undef __FUNCT__
130299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
130399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
130499cafbc1SBarry Smith {
130599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
130699cafbc1SBarry Smith   PetscErrorCode ierr;
130799cafbc1SBarry Smith 
130899cafbc1SBarry Smith   PetscFunctionBegin;
130999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
131099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
131199cafbc1SBarry Smith   PetscFunctionReturn(0);
131299cafbc1SBarry Smith }
131399cafbc1SBarry Smith 
131436032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ()
131536032a97SHong Zhang    Input: isrow       - distributed(parallel),
131636032a97SHong Zhang           iscol_local - locally owned (seq)
131736032a97SHong Zhang */
131899cafbc1SBarry Smith #undef __FUNCT__
131936032a97SHong Zhang #define __FUNCT__ "ISEqual_private"
132036032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13218f46ffcaSHong Zhang {
13228f46ffcaSHong Zhang   PetscErrorCode ierr;
13238f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13248f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
132536032a97SHong Zhang 
132636032a97SHong Zhang   PetscFunctionBegin;
13278f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
13288f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
13291098a8e8SHong Zhang   if (sz1 > sz2) {
13301098a8e8SHong Zhang     *flg = PETSC_FALSE;
13311098a8e8SHong Zhang     PetscFunctionReturn(0);
13321098a8e8SHong Zhang   }
13338f46ffcaSHong Zhang 
13348f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
13358f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13368f46ffcaSHong Zhang 
13378f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
13388f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
13398f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
13408f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
13418f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
13428f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
13438f46ffcaSHong Zhang 
13448f46ffcaSHong Zhang   nmatch=0;
13458f46ffcaSHong Zhang   k     = 0;
13468f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
13478f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
13488f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13498f46ffcaSHong Zhang         k = j; nmatch++;
13508f46ffcaSHong Zhang         break;
13518f46ffcaSHong Zhang       }
13528f46ffcaSHong Zhang     }
13538f46ffcaSHong Zhang   }
13548f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
13558f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13568f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
13578f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
13581098a8e8SHong Zhang   if (nmatch < sz1) {
13591098a8e8SHong Zhang     *flg = PETSC_FALSE;
13601098a8e8SHong Zhang   } else {
13611098a8e8SHong Zhang     *flg = PETSC_TRUE;
13621098a8e8SHong Zhang   }
136336032a97SHong Zhang   PetscFunctionReturn(0);
13648f46ffcaSHong Zhang }
136536032a97SHong Zhang 
136636032a97SHong Zhang #undef __FUNCT__
136736032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
136836032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
136936032a97SHong Zhang {
137036032a97SHong Zhang   PetscErrorCode ierr;
137136032a97SHong Zhang   IS             iscol_local;
137236032a97SHong Zhang   PetscInt       csize;
137336032a97SHong Zhang   PetscBool      isequal;
137436032a97SHong Zhang 
137536032a97SHong Zhang   PetscFunctionBegin;
137636032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
137736032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
137836032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
137936032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
138036032a97SHong Zhang   } else {
138136032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
138236032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
138336032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
13848f46ffcaSHong Zhang   }
13858f46ffcaSHong Zhang 
13868f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
138736032a97SHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
13888f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
13898f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
13908f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
13918f46ffcaSHong Zhang   }
13928f46ffcaSHong Zhang   PetscFunctionReturn(0);
13938f46ffcaSHong Zhang }
13948f46ffcaSHong Zhang 
13958f46ffcaSHong Zhang #undef __FUNCT__
13964a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1397dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1398a30f8f8cSSatish Balay {
1399a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1400dfbe8321SBarry Smith   PetscErrorCode ierr;
1401a30f8f8cSSatish Balay 
1402a30f8f8cSSatish Balay   PetscFunctionBegin;
1403a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1404a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1405a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1406a30f8f8cSSatish Balay }
1407a30f8f8cSSatish Balay 
14084a2ae208SSatish Balay #undef __FUNCT__
14094a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1410dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1411a30f8f8cSSatish Balay {
1412a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1413a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1414dfbe8321SBarry Smith   PetscErrorCode ierr;
1415a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1416a30f8f8cSSatish Balay 
1417a30f8f8cSSatish Balay   PetscFunctionBegin;
1418d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
141926fbe8dcSKarl Rupp 
1420a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
142126fbe8dcSKarl Rupp 
1422a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1423a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
142426fbe8dcSKarl Rupp 
1425a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
142626fbe8dcSKarl Rupp 
1427a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1428a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1429a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1430a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1431a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1432a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1433a30f8f8cSSatish Balay     info->memory       = isend[3];
1434a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1435a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1436ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
143726fbe8dcSKarl Rupp 
1438a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1439a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1440a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1441a30f8f8cSSatish Balay     info->memory       = irecv[3];
1442a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1443a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1444ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
144526fbe8dcSKarl Rupp 
1446a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1447a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1448a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1449a30f8f8cSSatish Balay     info->memory       = irecv[3];
1450a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1451f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1452a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1453a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1454a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1455a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1456a30f8f8cSSatish Balay }
1457a30f8f8cSSatish Balay 
14584a2ae208SSatish Balay #undef __FUNCT__
14594a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1460ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1461a30f8f8cSSatish Balay {
1462a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1463d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1464dfbe8321SBarry Smith   PetscErrorCode ierr;
1465a30f8f8cSSatish Balay 
1466a30f8f8cSSatish Balay   PetscFunctionBegin;
1467e98b92d7SKris Buschelman   switch (op) {
1468512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1469e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1471a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1472e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14734e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14744e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1475e98b92d7SKris Buschelman     break;
1476e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
14774e0d8c25SBarry Smith     a->roworiented = flg;
147826fbe8dcSKarl Rupp 
14794e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14804e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1481e98b92d7SKris Buschelman     break;
14824e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1483290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1484e98b92d7SKris Buschelman     break;
1485e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14864e0d8c25SBarry Smith     a->donotstash = flg;
1487e98b92d7SKris Buschelman     break;
1488e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
14894e0d8c25SBarry Smith     a->ht_flag = flg;
1490e98b92d7SKris Buschelman     break;
14919a4540c5SBarry Smith   case MAT_HERMITIAN:
1492e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1493eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
149426fbe8dcSKarl Rupp 
1495547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1496eeffb40dSHong Zhang     break;
1497ffa07934SHong Zhang   case MAT_SPD:
1498ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1499ffa07934SHong Zhang     A->spd     = flg;
1500ffa07934SHong Zhang     if (flg) {
1501ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1502ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1503ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1504ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1505ffa07934SHong Zhang     }
1506ffa07934SHong Zhang     break;
150777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1508eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1509eeffb40dSHong Zhang     break;
151077e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1511eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1512eeffb40dSHong Zhang     break;
15139a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1514e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1515290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
151677e54ba9SKris Buschelman     break;
1517d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15184e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1519d0d4cfc2SHong Zhang     break;
1520d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15214e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1522d0d4cfc2SHong Zhang     break;
1523d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15244e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1525d0d4cfc2SHong Zhang     break;
1526e98b92d7SKris Buschelman   default:
1527e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1528a30f8f8cSSatish Balay   }
1529a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1530a30f8f8cSSatish Balay }
1531a30f8f8cSSatish Balay 
15324a2ae208SSatish Balay #undef __FUNCT__
15338115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1534fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1535a30f8f8cSSatish Balay {
1536dfbe8321SBarry Smith   PetscErrorCode ierr;
15376e111a19SKarl Rupp 
1538a30f8f8cSSatish Balay   PetscFunctionBegin;
1539815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1540999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1541fc4dec0aSBarry Smith   }
15428115998fSBarry Smith   PetscFunctionReturn(0);
1543a30f8f8cSSatish Balay }
1544a30f8f8cSSatish Balay 
15454a2ae208SSatish Balay #undef __FUNCT__
15464a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1547dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1548a30f8f8cSSatish Balay {
1549a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1550a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1551dfbe8321SBarry Smith   PetscErrorCode ierr;
15525e90f9d9SHong Zhang   PetscInt       nv,m,n;
1553ace3abfcSBarry Smith   PetscBool      flg;
1554a30f8f8cSSatish Balay 
1555a30f8f8cSSatish Balay   PetscFunctionBegin;
1556a30f8f8cSSatish Balay   if (ll != rr) {
1557b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1558e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1559a30f8f8cSSatish Balay   }
1560b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1561b3bf805bSHong Zhang 
15625e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1563e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1564b3bf805bSHong Zhang 
15655e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1566e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
15675e90f9d9SHong Zhang 
1568ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15695e90f9d9SHong Zhang 
15705e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
15710298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
15725e90f9d9SHong Zhang 
15735e90f9d9SHong Zhang   /* scale the diagonal part */
1574a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1575a30f8f8cSSatish Balay 
15765e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1577ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15780298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1579a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1580a30f8f8cSSatish Balay }
1581a30f8f8cSSatish Balay 
15824a2ae208SSatish Balay #undef __FUNCT__
15834a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1584dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1585a30f8f8cSSatish Balay {
1586f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1587dfbe8321SBarry Smith   PetscErrorCode ierr;
1588a30f8f8cSSatish Balay 
1589a30f8f8cSSatish Balay   PetscFunctionBegin;
1590a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1591a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1592a30f8f8cSSatish Balay }
1593a30f8f8cSSatish Balay 
15946849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1595a30f8f8cSSatish Balay 
15964a2ae208SSatish Balay #undef __FUNCT__
15974a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1598ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1599a30f8f8cSSatish Balay {
1600a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1601a30f8f8cSSatish Balay   Mat            a,b,c,d;
1602ace3abfcSBarry Smith   PetscBool      flg;
1603dfbe8321SBarry Smith   PetscErrorCode ierr;
1604a30f8f8cSSatish Balay 
1605a30f8f8cSSatish Balay   PetscFunctionBegin;
1606a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1607a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1608a30f8f8cSSatish Balay 
1609a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1610abc0a331SBarry Smith   if (flg) {
1611a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1612a30f8f8cSSatish Balay   }
1613ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1614a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1615a30f8f8cSSatish Balay }
1616a30f8f8cSSatish Balay 
16174a2ae208SSatish Balay #undef __FUNCT__
16183c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
16193c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16203c896bc6SHong Zhang {
16213c896bc6SHong Zhang   PetscErrorCode ierr;
16223c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
16233c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
16243c896bc6SHong Zhang 
16253c896bc6SHong Zhang   PetscFunctionBegin;
16263c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16273c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1628d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
16293c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1630d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
16313c896bc6SHong Zhang   } else {
16323c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
16333c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
16343c896bc6SHong Zhang   }
16353c896bc6SHong Zhang   PetscFunctionReturn(0);
16363c896bc6SHong Zhang }
16373c896bc6SHong Zhang 
16383c896bc6SHong Zhang #undef __FUNCT__
16394994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
16404994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1641273d9f13SBarry Smith {
1642dfbe8321SBarry Smith   PetscErrorCode ierr;
1643273d9f13SBarry Smith 
1644273d9f13SBarry Smith   PetscFunctionBegin;
1645535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1646273d9f13SBarry Smith   PetscFunctionReturn(0);
1647273d9f13SBarry Smith }
1648a5e6ed63SBarry Smith 
16494fe895cdSHong Zhang #undef __FUNCT__
16504fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
16514fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16524fe895cdSHong Zhang {
16534fe895cdSHong Zhang   PetscErrorCode ierr;
16544fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16554fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16564fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
16574fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
16584fe895cdSHong Zhang 
16594fe895cdSHong Zhang   PetscFunctionBegin;
16604fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16614fe895cdSHong Zhang     PetscScalar alpha = a;
16624fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
16634fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1664c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
16658b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
16664fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
16674fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1668c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
16698b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1670a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1671ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1672ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1673ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1674ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
16754fe895cdSHong Zhang   } else {
16764de5dceeSHong Zhang     Mat      B;
16774de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
16784de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1679d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
16804de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
16814de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
16824de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
16834de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
16844de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
16854de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
16864de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
16874de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
16884de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
16894de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
16904de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
16914de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
169228be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
16934de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
16944de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1695d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
16964de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
16974fe895cdSHong Zhang   }
16984fe895cdSHong Zhang   PetscFunctionReturn(0);
16994fe895cdSHong Zhang }
17004fe895cdSHong Zhang 
1701a5e6ed63SBarry Smith #undef __FUNCT__
1702a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
17031302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1704a5e6ed63SBarry Smith {
17056849ba73SBarry Smith   PetscErrorCode ierr;
17061302d50aSBarry Smith   PetscInt       i;
170768906dc2SToby Isaac   PetscBool      flg,sorted;
1708a5e6ed63SBarry Smith 
17096849ba73SBarry Smith   PetscFunctionBegin;
171068906dc2SToby Isaac   for (i = 0; i < n; i++) {
171168906dc2SToby Isaac     ierr = ISSorted(irow[i],&sorted);CHKERRQ(ierr);
171268906dc2SToby Isaac     if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Row index set %d not sorted",i);
171368906dc2SToby Isaac     ierr = ISSorted(icol[i],&sorted);CHKERRQ(ierr);
171468906dc2SToby Isaac     if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Column index set %d not sorted",i);
171568906dc2SToby Isaac   }
17164dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1717a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1718a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
17194dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
17204dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1721a5e6ed63SBarry Smith     }
17224dcd73b1SHong Zhang   }
1723a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1724a5e6ed63SBarry Smith }
1725a5e6ed63SBarry Smith 
17267d68702bSBarry Smith #undef __FUNCT__
17277d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ"
17287d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17297d68702bSBarry Smith {
17307d68702bSBarry Smith   PetscErrorCode ierr;
17317d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17326f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
17337d68702bSBarry Smith 
17347d68702bSBarry Smith   PetscFunctionBegin;
17356f33a894SBarry Smith   if (!Y->preallocated) {
17367d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
17376f33a894SBarry Smith   } else if (!aij->nz) {
17386f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
17397d68702bSBarry Smith   }
17407d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
17417d68702bSBarry Smith   PetscFunctionReturn(0);
17427d68702bSBarry Smith }
17437d68702bSBarry Smith 
1744*3b49f96aSBarry Smith #undef __FUNCT__
1745*3b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPISBAIJ"
1746*3b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
1747*3b49f96aSBarry Smith {
1748*3b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1749*3b49f96aSBarry Smith   PetscErrorCode ierr;
1750*3b49f96aSBarry Smith 
1751*3b49f96aSBarry Smith   PetscFunctionBegin;
1752*3b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
1753*3b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
1754*3b49f96aSBarry Smith   if (d) {
1755*3b49f96aSBarry Smith     PetscInt rstart;
1756*3b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
1757*3b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
1758*3b49f96aSBarry Smith 
1759*3b49f96aSBarry Smith   }
1760*3b49f96aSBarry Smith   PetscFunctionReturn(0);
1761*3b49f96aSBarry Smith }
1762*3b49f96aSBarry Smith 
1763*3b49f96aSBarry Smith 
1764a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17653964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1766a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1767a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1768a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
176997304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1770431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1771431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1772a30f8f8cSSatish Balay                                        0,
1773a30f8f8cSSatish Balay                                        0,
1774a30f8f8cSSatish Balay                                        0,
177597304618SKris Buschelman                                /* 10*/ 0,
1776a30f8f8cSSatish Balay                                        0,
1777a30f8f8cSSatish Balay                                        0,
177841f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1779a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
178097304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1781a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1782a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1783a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1784a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
178597304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1786a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1787a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1788a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1789d519adbfSMatthew Knepley                                /* 24*/ 0,
1790a30f8f8cSSatish Balay                                        0,
1791a30f8f8cSSatish Balay                                        0,
1792a30f8f8cSSatish Balay                                        0,
1793a30f8f8cSSatish Balay                                        0,
17944994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1795b5df2d14SHong Zhang                                        0,
1796a30f8f8cSSatish Balay                                        0,
1797a30f8f8cSSatish Balay                                        0,
1798a30f8f8cSSatish Balay                                        0,
1799d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1800a30f8f8cSSatish Balay                                        0,
1801a30f8f8cSSatish Balay                                        0,
1802a30f8f8cSSatish Balay                                        0,
1803a30f8f8cSSatish Balay                                        0,
1804d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1805a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1806d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1807a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18083c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1809d519adbfSMatthew Knepley                                /* 44*/ 0,
1810a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18117d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1812a30f8f8cSSatish Balay                                        0,
1813a30f8f8cSSatish Balay                                        0,
1814f73d5cc4SBarry Smith                                /* 49*/ 0,
1815a30f8f8cSSatish Balay                                        0,
1816a30f8f8cSSatish Balay                                        0,
1817a30f8f8cSSatish Balay                                        0,
1818a30f8f8cSSatish Balay                                        0,
1819d519adbfSMatthew Knepley                                /* 54*/ 0,
1820a30f8f8cSSatish Balay                                        0,
1821a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1822a30f8f8cSSatish Balay                                        0,
1823a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18248f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
1825a30f8f8cSSatish Balay                                        0,
1826a30f8f8cSSatish Balay                                        0,
1827357abbc8SBarry Smith                                        0,
182824d5174aSHong Zhang                                        0,
1829d519adbfSMatthew Knepley                                /* 64*/ 0,
183024d5174aSHong Zhang                                        0,
183124d5174aSHong Zhang                                        0,
183224d5174aSHong Zhang                                        0,
183324d5174aSHong Zhang                                        0,
1834d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
183524d5174aSHong Zhang                                        0,
183697304618SKris Buschelman                                        0,
183797304618SKris Buschelman                                        0,
183897304618SKris Buschelman                                        0,
1839d519adbfSMatthew Knepley                                /* 74*/ 0,
184097304618SKris Buschelman                                        0,
184197304618SKris Buschelman                                        0,
184297304618SKris Buschelman                                        0,
184397304618SKris Buschelman                                        0,
1844d519adbfSMatthew Knepley                                /* 79*/ 0,
184597304618SKris Buschelman                                        0,
184697304618SKris Buschelman                                        0,
184797304618SKris Buschelman                                        0,
18485bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1849d519adbfSMatthew Knepley                                /* 84*/ 0,
1850865e5f61SKris Buschelman                                        0,
1851865e5f61SKris Buschelman                                        0,
1852865e5f61SKris Buschelman                                        0,
1853865e5f61SKris Buschelman                                        0,
1854d519adbfSMatthew Knepley                                /* 89*/ 0,
1855865e5f61SKris Buschelman                                        0,
1856865e5f61SKris Buschelman                                        0,
1857865e5f61SKris Buschelman                                        0,
1858865e5f61SKris Buschelman                                        0,
1859d519adbfSMatthew Knepley                                /* 94*/ 0,
1860865e5f61SKris Buschelman                                        0,
1861865e5f61SKris Buschelman                                        0,
186299cafbc1SBarry Smith                                        0,
186399cafbc1SBarry Smith                                        0,
1864d519adbfSMatthew Knepley                                /* 99*/ 0,
186599cafbc1SBarry Smith                                        0,
186699cafbc1SBarry Smith                                        0,
186799cafbc1SBarry Smith                                        0,
186899cafbc1SBarry Smith                                        0,
1869d519adbfSMatthew Knepley                                /*104*/ 0,
187099cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1871d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1872d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
187395936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
187495936485SShri Abhyankar                                /*109*/ 0,
187595936485SShri Abhyankar                                        0,
187695936485SShri Abhyankar                                        0,
187795936485SShri Abhyankar                                        0,
1878*3b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
187995936485SShri Abhyankar                                /*114*/ 0,
188095936485SShri Abhyankar                                        0,
188195936485SShri Abhyankar                                        0,
188295936485SShri Abhyankar                                        0,
188395936485SShri Abhyankar                                        0,
188495936485SShri Abhyankar                                /*119*/ 0,
188595936485SShri Abhyankar                                        0,
188695936485SShri Abhyankar                                        0,
18873964eb88SJed Brown                                        0,
18883964eb88SJed Brown                                        0,
18893964eb88SJed Brown                                /*124*/ 0,
18903964eb88SJed Brown                                        0,
18913964eb88SJed Brown                                        0,
18923964eb88SJed Brown                                        0,
18933964eb88SJed Brown                                        0,
18943964eb88SJed Brown                                /*129*/ 0,
18953964eb88SJed Brown                                        0,
18963964eb88SJed Brown                                        0,
18973964eb88SJed Brown                                        0,
18983964eb88SJed Brown                                        0,
18993964eb88SJed Brown                                /*134*/ 0,
19003964eb88SJed Brown                                        0,
19013964eb88SJed Brown                                        0,
19023964eb88SJed Brown                                        0,
19033964eb88SJed Brown                                        0,
19043964eb88SJed Brown                                /*139*/ 0,
1905f9426fe0SMark Adams                                        0,
190659f5e6ceSHong Zhang                                        0,
190759f5e6ceSHong Zhang                                        0,
190859f5e6ceSHong Zhang                                        0,
190959f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
191099cafbc1SBarry Smith };
1911a30f8f8cSSatish Balay 
19124a2ae208SSatish Balay #undef __FUNCT__
19134a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
191411bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1915a30f8f8cSSatish Balay {
1916a30f8f8cSSatish Balay   PetscFunctionBegin;
1917a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1918a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1919a30f8f8cSSatish Balay }
1920a30f8f8cSSatish Balay 
19214a2ae208SSatish Balay #undef __FUNCT__
1922a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1923b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1924a23d5eceSKris Buschelman {
1925a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1926dfbe8321SBarry Smith   PetscErrorCode ierr;
1927535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1928a23d5eceSKris Buschelman 
1929a23d5eceSKris Buschelman   PetscFunctionBegin;
193033d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
193126283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
193226283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1933e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1934899cda47SBarry Smith 
1935a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1936d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1937d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1938c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1939a23d5eceSKris Buschelman 
1940d0f46423SBarry Smith   B->rmap->bs = bs;
1941a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1942a23d5eceSKris Buschelman   b->mbs      = mbs;
1943a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1944de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1945de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1946a23d5eceSKris Buschelman 
1947a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1948d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1949a23d5eceSKris Buschelman   }
1950d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1951d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1952a23d5eceSKris Buschelman 
1953d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1954d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1955a23d5eceSKris Buschelman 
1956526dfc15SBarry Smith   if (!B->preallocated) {
1957f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1958d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
19599c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
19603bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1961f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1962d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
19634aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
19643bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1965ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1966526dfc15SBarry Smith   }
1967a23d5eceSKris Buschelman 
1968526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1969526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
197026fbe8dcSKarl Rupp 
1971526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1972a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1973a23d5eceSKris Buschelman }
1974a23d5eceSKris Buschelman 
1975dfb205c3SBarry Smith #undef __FUNCT__
1976dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1977dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1978dfb205c3SBarry Smith {
1979dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1980dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1981dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1982dfb205c3SBarry Smith   PetscScalar    *values=0;
1983dfb205c3SBarry Smith   PetscErrorCode ierr;
1984dfb205c3SBarry Smith 
1985dfb205c3SBarry Smith   PetscFunctionBegin;
1986ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1987dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1988dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1989dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1990dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1991e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1992dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1993dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1994dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1995dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1996dfb205c3SBarry Smith 
1997dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1998dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1999dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2000dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2001dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2002dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
2003dfb205c3SBarry Smith     JJ     = jj + ii[i];
2004dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
2005dfb205c3SBarry Smith       if (*JJ >= cstart) break;
2006dfb205c3SBarry Smith       JJ++;
2007dfb205c3SBarry Smith     }
2008dfb205c3SBarry Smith     d = 0;
2009dfb205c3SBarry Smith     for (; j<nz; j++) {
2010dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2011dfb205c3SBarry Smith       d++;
2012dfb205c3SBarry Smith     }
2013dfb205c3SBarry Smith     d_nnz[i] = d;
2014dfb205c3SBarry Smith     o_nnz[i] = nz - d;
2015dfb205c3SBarry Smith   }
2016dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2017dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2018dfb205c3SBarry Smith 
2019dfb205c3SBarry Smith   values = (PetscScalar*)V;
2020dfb205c3SBarry Smith   if (!values) {
2021785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2022dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2023dfb205c3SBarry Smith   }
2024dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2025dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2026dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2027dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2028dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2029dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2030dfb205c3SBarry Smith   }
2031dfb205c3SBarry Smith 
2032dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2033dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2034dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20357827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2036dfb205c3SBarry Smith   PetscFunctionReturn(0);
2037dfb205c3SBarry Smith }
2038dfb205c3SBarry Smith 
20390bad9183SKris Buschelman /*MC
2040fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2041828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2042828413b8SBarry Smith    the matrix is stored.
2043828413b8SBarry Smith 
2044828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2045828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
20460bad9183SKris Buschelman 
20470bad9183SKris Buschelman    Options Database Keys:
20480bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
20490bad9183SKris Buschelman 
20500bad9183SKris Buschelman   Level: beginner
20510bad9183SKris Buschelman 
20520bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
20530bad9183SKris Buschelman M*/
20540bad9183SKris Buschelman 
20558cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
2056aa5a9175SDahai Guo 
2057a23d5eceSKris Buschelman #undef __FUNCT__
20584a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
20598cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2060b5df2d14SHong Zhang {
2061b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2062dfbe8321SBarry Smith   PetscErrorCode ierr;
206394ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2064b5df2d14SHong Zhang 
2065b5df2d14SHong Zhang   PetscFunctionBegin;
2066b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2067b0a32e0cSBarry Smith   B->data = (void*)b;
2068b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2069b5df2d14SHong Zhang 
2070b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2071b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2072b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2073b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
207426fbe8dcSKarl Rupp 
2075ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2076ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2077b5df2d14SHong Zhang 
2078b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2079854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2080b5df2d14SHong Zhang 
2081b5df2d14SHong Zhang   /* build cache for off array entries formed */
2082ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
208326fbe8dcSKarl Rupp 
2084b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
20850298fd71SBarry Smith   b->colmap      = NULL;
20860298fd71SBarry Smith   b->garray      = NULL;
2087b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2088b5df2d14SHong Zhang 
2089b5df2d14SHong Zhang   /* stuff used in block assembly */
2090b5df2d14SHong Zhang   b->barray = 0;
2091b5df2d14SHong Zhang 
2092b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2093b5df2d14SHong Zhang   b->lvec    = 0;
2094b5df2d14SHong Zhang   b->Mvctx   = 0;
209540781036SHong Zhang   b->slvec0  = 0;
209640781036SHong Zhang   b->slvec0b = 0;
209740781036SHong Zhang   b->slvec1  = 0;
209840781036SHong Zhang   b->slvec1a = 0;
209940781036SHong Zhang   b->slvec1b = 0;
210040781036SHong Zhang   b->sMvctx  = 0;
2101b5df2d14SHong Zhang 
2102b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2103b5df2d14SHong Zhang   b->rowindices   = 0;
2104b5df2d14SHong Zhang   b->rowvalues    = 0;
2105b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2106b5df2d14SHong Zhang 
2107b5df2d14SHong Zhang   /* hash table stuff */
2108b5df2d14SHong Zhang   b->ht           = 0;
2109b5df2d14SHong Zhang   b->hd           = 0;
2110b5df2d14SHong Zhang   b->ht_size      = 0;
2111b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2112b5df2d14SHong Zhang   b->ht_fact      = 0;
2113b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2114b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2115b5df2d14SHong Zhang 
21167a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
21177a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21187a868f3eSHong Zhang 
211959ffdab8SBarry Smith   b->in_loc = 0;
212059ffdab8SBarry Smith   b->v_loc  = 0;
212159ffdab8SBarry Smith   b->n_loc  = 0;
212294ae4db5SBarry Smith 
2123bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2124bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2125bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
2126bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2127bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
2128bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
21296214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21306214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
21316214f412SHong Zhang #endif
2132aa5a9175SDahai Guo 
213323ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
213423ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
213523ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
213623ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
213726fbe8dcSKarl Rupp 
213817667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
213994ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
214094ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
214194ae4db5SBarry Smith   if (flg) {
214294ae4db5SBarry Smith     PetscReal fact = 1.39;
214394ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
214494ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
214594ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
214694ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
214794ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
214894ae4db5SBarry Smith   }
214994ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2150b5df2d14SHong Zhang   PetscFunctionReturn(0);
2151b5df2d14SHong Zhang }
2152b5df2d14SHong Zhang 
2153209238afSKris Buschelman /*MC
2154002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2155209238afSKris Buschelman 
2156209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2157209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2158209238afSKris Buschelman 
2159209238afSKris Buschelman    Options Database Keys:
2160209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2161209238afSKris Buschelman 
2162209238afSKris Buschelman   Level: beginner
2163209238afSKris Buschelman 
2164209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2165209238afSKris Buschelman M*/
2166209238afSKris Buschelman 
21674a2ae208SSatish Balay #undef __FUNCT__
21684a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
2169b5df2d14SHong Zhang /*@C
2170b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2171b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2172b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2173b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2174b5df2d14SHong Zhang 
2175b5df2d14SHong Zhang    Collective on Mat
2176b5df2d14SHong Zhang 
2177b5df2d14SHong Zhang    Input Parameters:
21781c4f3114SJed Brown +  B - the matrix
2179bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2180bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2181b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2182b5df2d14SHong Zhang            submatrix  (same for all local rows)
2183b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
21846d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
21850298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
218695742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2187b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2188b5df2d14SHong Zhang            submatrix (same for all local rows).
2189b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2190c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
21910298fd71SBarry Smith            (possibly different for each block row) or NULL.
2192b5df2d14SHong Zhang 
2193b5df2d14SHong Zhang 
2194b5df2d14SHong Zhang    Options Database Keys:
2195b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
2196b5df2d14SHong Zhang                      block calculations (much slower)
2197b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
2198b5df2d14SHong Zhang 
2199b5df2d14SHong Zhang    Notes:
2200b5df2d14SHong Zhang 
2201b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2202b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2203b5df2d14SHong Zhang 
220449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
220549a6f317SBarry Smith 
2206b5df2d14SHong Zhang    Storage Information:
2207b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2208b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2209b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2210b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2211b5df2d14SHong Zhang 
2212b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2213b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
22140298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2215b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2216b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2217b5df2d14SHong Zhang 
2218aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2219aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2220aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2221aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2222aa95bbe8SBarry Smith 
2223b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2224b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2225b5df2d14SHong Zhang 
2226b5df2d14SHong Zhang .vb
2227b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2228a4b1a0f6SJed Brown           --------------------------
2229c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2230c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2231c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2232a4b1a0f6SJed Brown           --------------------------
2233b5df2d14SHong Zhang .ve
2234b5df2d14SHong Zhang 
2235b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2236b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
22376d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
22386d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2239b5df2d14SHong Zhang 
22406d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22416d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2242c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2243c2fc9fa9SBarry Smith 
2244b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2245b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2246b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2247b5df2d14SHong Zhang    matrices.
2248b5df2d14SHong Zhang 
2249b5df2d14SHong Zhang    Level: intermediate
2250b5df2d14SHong Zhang 
2251b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2252b5df2d14SHong Zhang 
2253ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2254b5df2d14SHong Zhang @*/
22557087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2256b5df2d14SHong Zhang {
22574ac538c5SBarry Smith   PetscErrorCode ierr;
2258b5df2d14SHong Zhang 
2259b5df2d14SHong Zhang   PetscFunctionBegin;
22606ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22616ba663aaSJed Brown   PetscValidType(B,1);
22626ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
22634ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2264b5df2d14SHong Zhang   PetscFunctionReturn(0);
2265b5df2d14SHong Zhang }
2266b5df2d14SHong Zhang 
22674a2ae208SSatish Balay #undef __FUNCT__
226869b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2269a30f8f8cSSatish Balay /*@C
227069b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2271a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2272a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2273a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2274a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2275a30f8f8cSSatish Balay 
2276a30f8f8cSSatish Balay    Collective on MPI_Comm
2277a30f8f8cSSatish Balay 
2278a30f8f8cSSatish Balay    Input Parameters:
2279a30f8f8cSSatish Balay +  comm - MPI communicator
2280bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2281bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2282a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2283a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2284a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2285a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2286a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2287a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2288a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2289a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2290a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2291a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2292a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
22936d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
22940298fd71SBarry Smith            (possibly different for each block block row) or NULL.
229595742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
229695742e49SBarry Smith            set its value even if it is zero.
2297a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2298a30f8f8cSSatish Balay            submatrix (same for all local rows).
2299a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2300a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23010298fd71SBarry Smith            each block row) or NULL.
2302a30f8f8cSSatish Balay 
2303a30f8f8cSSatish Balay    Output Parameter:
2304a30f8f8cSSatish Balay .  A - the matrix
2305a30f8f8cSSatish Balay 
2306a30f8f8cSSatish Balay    Options Database Keys:
2307a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2308a30f8f8cSSatish Balay                      block calculations (much slower)
2309a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2310a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2311a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2312a30f8f8cSSatish Balay 
2313175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2314ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2315175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2316175b88e8SBarry Smith 
2317a30f8f8cSSatish Balay    Notes:
2318d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
23196d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2320d1be2dadSMatthew Knepley 
2321a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2322a30f8f8cSSatish Balay    (possibly both).
2323a30f8f8cSSatish Balay 
2324a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2325a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2326a30f8f8cSSatish Balay 
232749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
232849a6f317SBarry Smith 
2329a30f8f8cSSatish Balay    Storage Information:
2330a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2331a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2332a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2333a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2334a30f8f8cSSatish Balay 
2335a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2336a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
23370298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2338a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2339a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2340a30f8f8cSSatish Balay 
2341a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2342a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2343a30f8f8cSSatish Balay 
2344a30f8f8cSSatish Balay .vb
2345a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2346a4b1a0f6SJed Brown           --------------------------
2347c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2348c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2349c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2350a4b1a0f6SJed Brown           --------------------------
2351a30f8f8cSSatish Balay .ve
2352a30f8f8cSSatish Balay 
2353a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2354a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
23556d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23566d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2357a30f8f8cSSatish Balay 
23586d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23596d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2360a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2361a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2362a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2363a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2364a30f8f8cSSatish Balay    matrices.
2365a30f8f8cSSatish Balay 
2366a30f8f8cSSatish Balay    Level: intermediate
2367a30f8f8cSSatish Balay 
2368a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2369a30f8f8cSSatish Balay 
237069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2371a30f8f8cSSatish Balay @*/
2372a30f8f8cSSatish Balay 
237369b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2374a30f8f8cSSatish Balay {
23756849ba73SBarry Smith   PetscErrorCode ierr;
23761302d50aSBarry Smith   PetscMPIInt    size;
2377a30f8f8cSSatish Balay 
2378a30f8f8cSSatish Balay   PetscFunctionBegin;
2379f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2380f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2381273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2382273d9f13SBarry Smith   if (size > 1) {
2383b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2384b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2385273d9f13SBarry Smith   } else {
2386273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2387273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2388273d9f13SBarry Smith   }
2389a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2390a30f8f8cSSatish Balay }
2391a30f8f8cSSatish Balay 
2392a30f8f8cSSatish Balay 
23934a2ae208SSatish Balay #undef __FUNCT__
23944a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
23956849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2396a30f8f8cSSatish Balay {
2397a30f8f8cSSatish Balay   Mat            mat;
2398a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2399dfbe8321SBarry Smith   PetscErrorCode ierr;
2400d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2401387bc808SHong Zhang   PetscScalar    *array;
2402a30f8f8cSSatish Balay 
2403a30f8f8cSSatish Balay   PetscFunctionBegin;
2404a30f8f8cSSatish Balay   *newmat = 0;
240526fbe8dcSKarl Rupp 
2406ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2407d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
24087adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
24091d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
24101e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
24111e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2412e1b6402fSHong Zhang 
2413d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2414273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
241582327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24167fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24177fff6886SHong Zhang 
2418b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2419a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2420a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2421a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2422a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2423a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2424a30f8f8cSSatish Balay 
2425899cda47SBarry Smith 
2426a30f8f8cSSatish Balay   a->size         = oldmat->size;
2427a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2428a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2429a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2430a30f8f8cSSatish Balay   a->rowindices   = 0;
2431a30f8f8cSSatish Balay   a->rowvalues    = 0;
2432a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2433a30f8f8cSSatish Balay   a->barray       = 0;
2434899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2435899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2436899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2437899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2438a30f8f8cSSatish Balay 
2439a30f8f8cSSatish Balay   /* hash table stuff */
2440a30f8f8cSSatish Balay   a->ht           = 0;
2441a30f8f8cSSatish Balay   a->hd           = 0;
2442a30f8f8cSSatish Balay   a->ht_size      = 0;
2443a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2444a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2445a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2446a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2447a30f8f8cSSatish Balay 
2448899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2449a30f8f8cSSatish Balay   if (oldmat->colmap) {
2450a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2451a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2452a30f8f8cSSatish Balay #else
2453854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
24543bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
24551302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2456a30f8f8cSSatish Balay #endif
2457a30f8f8cSSatish Balay   } else a->colmap = 0;
2458387bc808SHong Zhang 
2459a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2460785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
24613bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
24621302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2463a30f8f8cSSatish Balay   } else a->garray = 0;
2464a30f8f8cSSatish Balay 
2465ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2466a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
24673bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2468a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
24693bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
247082327fa8SHong Zhang 
247182327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
24723bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
247382327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
24743bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2475387bc808SHong Zhang 
2476387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
24771ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2478778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2479778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
24801ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
24811ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2482778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
24831ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
24843bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
24853bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
24863bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
24873bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
24883bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2489387bc808SHong Zhang 
2490387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2491387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2492387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
24933bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
249482327fa8SHong Zhang 
2495a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
24963bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2497a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
24983bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2499140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2500a30f8f8cSSatish Balay   *newmat = mat;
2501a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2502a30f8f8cSSatish Balay }
2503a30f8f8cSSatish Balay 
25044a2ae208SSatish Balay #undef __FUNCT__
25055bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2506112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
250795936485SShri Abhyankar {
250895936485SShri Abhyankar   PetscErrorCode ierr;
250995936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
251095936485SShri Abhyankar   PetscScalar    *vals,*buf;
2511ce94432eSBarry Smith   MPI_Comm       comm;
251295936485SShri Abhyankar   MPI_Status     status;
2513adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2514adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
251595936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
25163059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
251795936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2518461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
251995936485SShri Abhyankar   int            fd;
252095936485SShri Abhyankar 
252195936485SShri Abhyankar   PetscFunctionBegin;
2522c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2523c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2524ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
25250298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
25260298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
252795936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
25283059b6faSBarry Smith   if (bs < 0) bs = 1;
252995936485SShri Abhyankar 
253095936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
253195936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
253295936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
25335872f025SBarry Smith   if (!rank) {
253495936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
253595936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
253695936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
253795936485SShri Abhyankar   }
253895936485SShri Abhyankar 
253995936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
254026fbe8dcSKarl Rupp   M    = header[1];
254126fbe8dcSKarl Rupp   N    = header[2];
254295936485SShri Abhyankar 
254395936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2544461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2545461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
254695936485SShri Abhyankar 
254795936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
254895936485SShri Abhyankar 
254995936485SShri Abhyankar   /*
255095936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
255195936485SShri Abhyankar      divisible by the blocksize
255295936485SShri Abhyankar   */
255395936485SShri Abhyankar   Mbs        = M/bs;
255495936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
255595936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
255695936485SShri Abhyankar   else                  Mbs++;
255795936485SShri Abhyankar   if (extra_rows &&!rank) {
255895936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
255995936485SShri Abhyankar   }
256095936485SShri Abhyankar 
256195936485SShri Abhyankar   /* determine ownership of all rows */
256295936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
256395936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
256495936485SShri Abhyankar     m   = mbs*bs;
256595936485SShri Abhyankar   } else { /* User Set */
256695936485SShri Abhyankar     m   = newmat->rmap->n;
256795936485SShri Abhyankar     mbs = m/bs;
256895936485SShri Abhyankar   }
2569dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
25704dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
257195936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
257295936485SShri Abhyankar   rowners[0] = 0;
257395936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
257495936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
257595936485SShri Abhyankar   rstart = rowners[rank];
257695936485SShri Abhyankar   rend   = rowners[rank+1];
257795936485SShri Abhyankar 
257895936485SShri Abhyankar   /* distribute row lengths to all processors */
2579785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
258095936485SShri Abhyankar   if (!rank) {
2581854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
258295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
258395936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2584785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
258595936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
258695936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
258795936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
258895936485SShri Abhyankar   } else {
258995936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
259095936485SShri Abhyankar   }
259195936485SShri Abhyankar 
259295936485SShri Abhyankar   if (!rank) {   /* procs[0] */
259395936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2594785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
259595936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
259695936485SShri Abhyankar     for (i=0; i<size; i++) {
259795936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
259895936485SShri Abhyankar         procsnz[i] += rowlengths[j];
259995936485SShri Abhyankar       }
260095936485SShri Abhyankar     }
260195936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
260295936485SShri Abhyankar 
260395936485SShri Abhyankar     /* determine max buffer needed and allocate it */
260495936485SShri Abhyankar     maxnz = 0;
260595936485SShri Abhyankar     for (i=0; i<size; i++) {
260695936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
260795936485SShri Abhyankar     }
2608785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
260995936485SShri Abhyankar 
261095936485SShri Abhyankar     /* read in my part of the matrix column indices  */
261195936485SShri Abhyankar     nz     = procsnz[0];
2612785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
261395936485SShri Abhyankar     mycols = ibuf;
261495936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
261595936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
261626fbe8dcSKarl Rupp     if (size == 1) {
261726fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
261826fbe8dcSKarl Rupp     }
261995936485SShri Abhyankar 
262095936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
262195936485SShri Abhyankar     for (i=1; i<size-1; i++) {
262295936485SShri Abhyankar       nz   = procsnz[i];
262395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
262495936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
262595936485SShri Abhyankar     }
262695936485SShri Abhyankar     /* read in the stuff for the last proc */
262795936485SShri Abhyankar     if (size != 1) {
262895936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
262995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
263095936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
263195936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
263295936485SShri Abhyankar     }
263395936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
263495936485SShri Abhyankar   } else {  /* procs[i], i>0 */
263595936485SShri Abhyankar     /* determine buffer space needed for message */
263695936485SShri Abhyankar     nz = 0;
263726fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2638785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
263995936485SShri Abhyankar     mycols = ibuf;
264095936485SShri Abhyankar     /* receive message of column indices*/
264195936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
264295936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
264395936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
264495936485SShri Abhyankar   }
264595936485SShri Abhyankar 
264695936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2647dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2648dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
264995936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
265095936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
265195936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
265295936485SShri Abhyankar   rowcount = 0;
265395936485SShri Abhyankar   nzcount  = 0;
265495936485SShri Abhyankar   for (i=0; i<mbs; i++) {
265595936485SShri Abhyankar     dcount  = 0;
265695936485SShri Abhyankar     odcount = 0;
265795936485SShri Abhyankar     for (j=0; j<bs; j++) {
265895936485SShri Abhyankar       kmax = locrowlens[rowcount];
265995936485SShri Abhyankar       for (k=0; k<kmax; k++) {
266095936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
266195936485SShri Abhyankar         if (!mask[tmp]) {
266295936485SShri Abhyankar           mask[tmp] = 1;
266395936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
266495936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
266595936485SShri Abhyankar         }
266695936485SShri Abhyankar       }
266795936485SShri Abhyankar       rowcount++;
266895936485SShri Abhyankar     }
266995936485SShri Abhyankar 
267095936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
267195936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
267295936485SShri Abhyankar 
267395936485SShri Abhyankar     /* zero out the mask elements we set */
267495936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
267595936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
267695936485SShri Abhyankar   }
267795936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
267895936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
26796816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
268095936485SShri Abhyankar 
268195936485SShri Abhyankar   if (!rank) {
2682785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
268395936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
268495936485SShri Abhyankar     nz     = procsnz[0];
268595936485SShri Abhyankar     vals   = buf;
268695936485SShri Abhyankar     mycols = ibuf;
268795936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
268895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
268926fbe8dcSKarl Rupp     if (size == 1) {
269026fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
269126fbe8dcSKarl Rupp     }
269295936485SShri Abhyankar 
269395936485SShri Abhyankar     /* insert into matrix */
269495936485SShri Abhyankar     jj = rstart*bs;
269595936485SShri Abhyankar     for (i=0; i<m; i++) {
269695936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
269795936485SShri Abhyankar       mycols += locrowlens[i];
269895936485SShri Abhyankar       vals   += locrowlens[i];
269995936485SShri Abhyankar       jj++;
270095936485SShri Abhyankar     }
270195936485SShri Abhyankar 
270295936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
270395936485SShri Abhyankar     for (i=1; i<size-1; i++) {
270495936485SShri Abhyankar       nz   = procsnz[i];
270595936485SShri Abhyankar       vals = buf;
270695936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
270795936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
270895936485SShri Abhyankar     }
270995936485SShri Abhyankar     /* the last proc */
271095936485SShri Abhyankar     if (size != 1) {
271195936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
271295936485SShri Abhyankar       vals = buf;
271395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
271495936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
271595936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
271695936485SShri Abhyankar     }
271795936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
271895936485SShri Abhyankar 
271995936485SShri Abhyankar   } else {
272095936485SShri Abhyankar     /* receive numeric values */
2721785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
272295936485SShri Abhyankar 
272395936485SShri Abhyankar     /* receive message of values*/
272495936485SShri Abhyankar     vals   = buf;
272595936485SShri Abhyankar     mycols = ibuf;
272695936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
272795936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
272895936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
272995936485SShri Abhyankar 
273095936485SShri Abhyankar     /* insert into matrix */
273195936485SShri Abhyankar     jj = rstart*bs;
273295936485SShri Abhyankar     for (i=0; i<m; i++) {
273395936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
273495936485SShri Abhyankar       mycols += locrowlens[i];
273595936485SShri Abhyankar       vals   += locrowlens[i];
273695936485SShri Abhyankar       jj++;
273795936485SShri Abhyankar     }
273895936485SShri Abhyankar   }
273995936485SShri Abhyankar 
274095936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
274195936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
274295936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
274395936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
274495936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
274595936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
274695936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
274795936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
274895936485SShri Abhyankar   PetscFunctionReturn(0);
274995936485SShri Abhyankar }
275095936485SShri Abhyankar 
275195936485SShri Abhyankar #undef __FUNCT__
27524a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2753dcf5cc72SBarry Smith /*XXXXX@
2754a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2755a30f8f8cSSatish Balay 
2756a30f8f8cSSatish Balay    Input Parameters:
2757a30f8f8cSSatish Balay .  mat  - the matrix
2758a30f8f8cSSatish Balay .  fact - factor
2759a30f8f8cSSatish Balay 
2760c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2761a30f8f8cSSatish Balay 
2762a30f8f8cSSatish Balay    Level: advanced
2763a30f8f8cSSatish Balay 
2764a30f8f8cSSatish Balay   Notes:
2765a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2766a30f8f8cSSatish Balay 
2767a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2768a30f8f8cSSatish Balay 
2769a30f8f8cSSatish Balay .seealso: MatSetOption()
2770dcf5cc72SBarry Smith @XXXXX*/
2771dcf5cc72SBarry Smith 
277224d5174aSHong Zhang 
27734a2ae208SSatish Balay #undef __FUNCT__
2774985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2775985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
277624d5174aSHong Zhang {
277724d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2778f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2779ca54ac64SHong Zhang   PetscReal      atmp;
278087828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2781dfbe8321SBarry Smith   PetscErrorCode ierr;
27821302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
27831302d50aSBarry Smith   PetscMPIInt    rank,size;
27841302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
278587828ca2SBarry Smith   PetscScalar    *va;
27868a1c53f2SBarry Smith   MatScalar      *ba;
2787f4c0e9e4SHong Zhang   MPI_Status     stat;
278824d5174aSHong Zhang 
278924d5174aSHong Zhang   PetscFunctionBegin;
2790e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
27910298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
27921ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2793f4c0e9e4SHong Zhang 
2794ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2795ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2796f4c0e9e4SHong Zhang 
2797d0f46423SBarry Smith   bs  = A->rmap->bs;
2798f4c0e9e4SHong Zhang   mbs = a->mbs;
2799f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2800f4c0e9e4SHong Zhang   ba  = b->a;
2801f4c0e9e4SHong Zhang   bi  = b->i;
2802f4c0e9e4SHong Zhang   bj  = b->j;
2803f4c0e9e4SHong Zhang 
2804f4c0e9e4SHong Zhang   /* find ownerships */
2805d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2806f4c0e9e4SHong Zhang 
2807f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2808785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2809ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2810f4c0e9e4SHong Zhang 
2811f4c0e9e4SHong Zhang   /* row_max for B */
2812b8475685SHong Zhang   if (rank != size-1) {
2813f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2814f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2815f4c0e9e4SHong Zhang       brow  = bs*i;
2816f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2817f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2818f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2819ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
282004d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2821f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2822f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2823ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2824ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2825f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2826f4c0e9e4SHong Zhang           }
2827f4c0e9e4SHong Zhang         }
2828f4c0e9e4SHong Zhang         bj++;
2829f4c0e9e4SHong Zhang       }
2830f4c0e9e4SHong Zhang     }
2831f4c0e9e4SHong Zhang 
2832f4c0e9e4SHong Zhang     /* send values to its owners */
2833f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2834f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2835ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2836ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2837ca54ac64SHong Zhang     }
2838f4c0e9e4SHong Zhang   }
2839f4c0e9e4SHong Zhang 
2840f4c0e9e4SHong Zhang   /* receive values */
2841ca54ac64SHong Zhang   if (rank) {
2842f4c0e9e4SHong Zhang     rvalues = work;
2843ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2844f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2845ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2846f4c0e9e4SHong Zhang       /* process values */
2847f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2848ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2849f4c0e9e4SHong Zhang       }
2850f4c0e9e4SHong Zhang     }
2851ca54ac64SHong Zhang   }
2852f4c0e9e4SHong Zhang 
28531ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2854ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
285524d5174aSHong Zhang   PetscFunctionReturn(0);
285624d5174aSHong Zhang }
28572798e883SHong Zhang 
28582798e883SHong Zhang #undef __FUNCT__
285941f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
286041f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
28612798e883SHong Zhang {
28622798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2863dfbe8321SBarry Smith   PetscErrorCode    ierr;
2864d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
28653649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2866ffe4fb16SHong Zhang   Vec               bb1;
28673649974fSBarry Smith   const PetscScalar *b;
2868ffe4fb16SHong Zhang 
2869ffe4fb16SHong Zhang   PetscFunctionBegin;
2870e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2871e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2872ffe4fb16SHong Zhang 
2873a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
287441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2875a2b30743SBarry Smith     PetscFunctionReturn(0);
2876a2b30743SBarry Smith   }
2877a2b30743SBarry Smith 
2878ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2879ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
288041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2881ffe4fb16SHong Zhang       its--;
2882ffe4fb16SHong Zhang     }
2883ffe4fb16SHong Zhang 
2884ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2885ffe4fb16SHong Zhang     while (its--) {
2886ffe4fb16SHong Zhang 
2887ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2888ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2889ffe4fb16SHong Zhang 
2890ffe4fb16SHong Zhang       /* copy xx into slvec0a */
28911ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
28921ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2893ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
28941ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2895ffe4fb16SHong Zhang 
2896efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2897ffe4fb16SHong Zhang 
2898ffe4fb16SHong Zhang       /* copy bb into slvec1a */
28991ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
29003649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2901ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
29021ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2903ffe4fb16SHong Zhang 
2904ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2905fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2906ffe4fb16SHong Zhang 
2907ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
29081ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2909a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2910ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2911ffe4fb16SHong Zhang 
2912ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2913ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2914ffe4fb16SHong Zhang 
2915ffe4fb16SHong Zhang       /* local diagonal sweep */
291641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2917ffe4fb16SHong Zhang     }
29186bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2919fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
292041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2921fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
292241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2923fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2924fa22f6d0SBarry Smith     Vec               xx1;
2925ace3abfcSBarry Smith     PetscBool         hasop;
292620f1ed55SBarry Smith     const PetscScalar *diag;
2927887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
292820f1ed55SBarry Smith     PetscInt          i,n;
2929fa22f6d0SBarry Smith 
2930fa22f6d0SBarry Smith     if (!mat->xx1) {
2931fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2932fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2933fa22f6d0SBarry Smith     }
2934fa22f6d0SBarry Smith     xx1 = mat->xx1;
2935fa22f6d0SBarry Smith     bb1 = mat->bb1;
2936fa22f6d0SBarry Smith 
293741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2938fa22f6d0SBarry Smith 
2939fa22f6d0SBarry Smith     if (!mat->diag) {
2940effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
29412a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2942fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2943fa22f6d0SBarry Smith     }
2944fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2945fa22f6d0SBarry Smith 
2946fa22f6d0SBarry Smith     if (hasop) {
2947fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2948887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
294920f1ed55SBarry Smith     } else {
295020f1ed55SBarry Smith       /*
295120f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
295220f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2953887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
295420f1ed55SBarry Smith       */
295520f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29563649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29573649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
295820f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
295920f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2960887ee2caSBarry Smith       if (omega == 1.0) {
296126fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
296220f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2963887ee2caSBarry Smith       } else {
296426fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2965887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2966887ee2caSBarry Smith       }
296720f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29683649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29693649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
297020f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
297120f1ed55SBarry Smith     }
2972fa22f6d0SBarry Smith 
2973fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2974fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2975fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2976fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2977fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2978fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2979fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2980fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2981fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2982fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2983effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2984fa22f6d0SBarry Smith 
2985fa22f6d0SBarry Smith     /* local sweep */
298641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2987fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2988f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2989ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2990ffe4fb16SHong Zhang }
2991ffe4fb16SHong Zhang 
2992ffe4fb16SHong Zhang #undef __FUNCT__
299341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
299441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2995ffe4fb16SHong Zhang {
2996ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2997dfbe8321SBarry Smith   PetscErrorCode ierr;
29982798e883SHong Zhang   Vec            lvec1,bb1;
29992798e883SHong Zhang 
30002798e883SHong Zhang   PetscFunctionBegin;
3001e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3002e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
30032798e883SHong Zhang 
3004c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
30052798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
300641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
30072798e883SHong Zhang       its--;
30082798e883SHong Zhang     }
30092798e883SHong Zhang 
30102798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
30112798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
30122798e883SHong Zhang     while (its--) {
3013ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
30142798e883SHong Zhang 
30152798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
30162798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3017efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
30182798e883SHong Zhang 
3019ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
30202798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3021ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30222798e883SHong Zhang 
30232798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3024efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
30252798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
30262798e883SHong Zhang 
3027ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30282798e883SHong Zhang 
3029c14dc6b6SHong Zhang       /* diagonal sweep */
303041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
30312798e883SHong Zhang     }
30326bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
30336bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
30346bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
30352798e883SHong Zhang   PetscFunctionReturn(0);
30362798e883SHong Zhang }
30372798e883SHong Zhang 
3038dfb205c3SBarry Smith #undef __FUNCT__
3039dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
3040dfb205c3SBarry Smith /*@
3041dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3042dfb205c3SBarry Smith          CSR format the local rows.
3043dfb205c3SBarry Smith 
3044dfb205c3SBarry Smith    Collective on MPI_Comm
3045dfb205c3SBarry Smith 
3046dfb205c3SBarry Smith    Input Parameters:
3047dfb205c3SBarry Smith +  comm - MPI communicator
3048dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3049dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3050dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3051dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3052dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3053dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3054dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3055dfb205c3SBarry Smith .   i - row indices
3056dfb205c3SBarry Smith .   j - column indices
3057dfb205c3SBarry Smith -   a - matrix values
3058dfb205c3SBarry Smith 
3059dfb205c3SBarry Smith    Output Parameter:
3060dfb205c3SBarry Smith .   mat - the matrix
3061dfb205c3SBarry Smith 
3062dfb205c3SBarry Smith    Level: intermediate
3063dfb205c3SBarry Smith 
3064dfb205c3SBarry Smith    Notes:
3065dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3066dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3067dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3068dfb205c3SBarry Smith 
3069dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3070dfb205c3SBarry Smith 
3071dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3072dfb205c3SBarry Smith 
3073dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
307469b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3075dfb205c3SBarry Smith @*/
30767087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3077dfb205c3SBarry Smith {
3078dfb205c3SBarry Smith   PetscErrorCode ierr;
3079dfb205c3SBarry Smith 
3080dfb205c3SBarry Smith 
3081dfb205c3SBarry Smith   PetscFunctionBegin;
3082f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3083dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3084dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3085dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3086dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3087dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3088dfb205c3SBarry Smith   PetscFunctionReturn(0);
3089dfb205c3SBarry Smith }
3090dfb205c3SBarry Smith 
3091dfb205c3SBarry Smith 
3092dfb205c3SBarry Smith #undef __FUNCT__
3093dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
3094dfb205c3SBarry Smith /*@C
3095dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
3096dfb205c3SBarry Smith    (the default parallel PETSc format).
3097dfb205c3SBarry Smith 
3098dfb205c3SBarry Smith    Collective on MPI_Comm
3099dfb205c3SBarry Smith 
3100dfb205c3SBarry Smith    Input Parameters:
31011c4f3114SJed Brown +  B - the matrix
3102dfb205c3SBarry Smith .  bs - the block size
3103dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3104dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3105dfb205c3SBarry Smith -  v - optional values in the matrix
3106dfb205c3SBarry Smith 
3107dfb205c3SBarry Smith    Level: developer
3108dfb205c3SBarry Smith 
3109dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3110dfb205c3SBarry Smith 
311169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3112dfb205c3SBarry Smith @*/
31137087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3114dfb205c3SBarry Smith {
31154ac538c5SBarry Smith   PetscErrorCode ierr;
3116dfb205c3SBarry Smith 
3117dfb205c3SBarry Smith   PetscFunctionBegin;
31184ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3119dfb205c3SBarry Smith   PetscFunctionReturn(0);
3120dfb205c3SBarry Smith }
3121dfb205c3SBarry Smith 
3122de4b53ebSHong Zhang #undef __FUNCT__
312310c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
312410c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
31254dcd73b1SHong Zhang {
31264dcd73b1SHong Zhang   PetscErrorCode ierr;
312710c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
312810c56fdeSHong Zhang   PetscInt       *indx;
312910c56fdeSHong Zhang   PetscScalar    *values;
3130dfb205c3SBarry Smith 
31314dcd73b1SHong Zhang   PetscFunctionBegin;
31324dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
313310c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
313410c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
313510c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
313610c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
31374dcd73b1SHong Zhang 
313810c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
313910c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
314010c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
314110c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
314210c56fdeSHong Zhang     }
314310c56fdeSHong Zhang     /* Check sum(n) = Nbs */
314410c56fdeSHong Zhang     ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
314510c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
314610c56fdeSHong Zhang 
314710c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
314810c56fdeSHong Zhang     rstart -= mbs;
31494dcd73b1SHong Zhang 
31504dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
315110c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3152e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
315310c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
31544dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
31554dcd73b1SHong Zhang       nnz = nnz/bs;
31564dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
31574dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
31584dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
31594dcd73b1SHong Zhang     }
3160e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
31614dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
31624dcd73b1SHong Zhang 
31634dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
316410c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
31654dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
31664dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
31674dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
31684dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
31694dcd73b1SHong Zhang   }
31704dcd73b1SHong Zhang 
317110c56fdeSHong Zhang   /* numeric phase */
31724dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
317310c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
31744dcd73b1SHong Zhang 
3175e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
31764dcd73b1SHong Zhang   for (i=0; i<m; i++) {
31774dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31784dcd73b1SHong Zhang     Ii   = i + rstart;
317910c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
31804dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31814dcd73b1SHong Zhang   }
3182e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
318310c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
318410c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
31854dcd73b1SHong Zhang   PetscFunctionReturn(0);
31864dcd73b1SHong Zhang }
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