1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 86214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 127087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 13a30f8f8cSSatish Balay { 14f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 15dfbe8321SBarry Smith PetscErrorCode ierr; 16a30f8f8cSSatish Balay 17a30f8f8cSSatish Balay PetscFunctionBegin; 18a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 19a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 20a30f8f8cSSatish Balay PetscFunctionReturn(0); 21a30f8f8cSSatish Balay } 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 36d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 37a30f8f8cSSatish Balay { \ 38a30f8f8cSSatish Balay \ 39a30f8f8cSSatish Balay brow = row/bs; \ 40a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 41a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 42a30f8f8cSSatish Balay bcol = col/bs; \ 43a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 44a30f8f8cSSatish Balay low = 0; high = nrow; \ 45a30f8f8cSSatish Balay while (high-low > 3) { \ 46a30f8f8cSSatish Balay t = (low+high)/2; \ 47a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 48a30f8f8cSSatish Balay else low = t; \ 49a30f8f8cSSatish Balay } \ 50a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 51a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 52a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 53a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 54a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 55a30f8f8cSSatish Balay else *bap = value; \ 56a30f8f8cSSatish Balay goto a_noinsert; \ 57a30f8f8cSSatish Balay } \ 58a30f8f8cSSatish Balay } \ 59a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 60d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 61fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 62a30f8f8cSSatish Balay N = nrow++ - 1; \ 63a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 64a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 65a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 66a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 69a30f8f8cSSatish Balay rp[_i] = bcol; \ 70a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 71e56f5c9eSBarry Smith A->nonzerostate++;\ 72a30f8f8cSSatish Balay a_noinsert:; \ 73a30f8f8cSSatish Balay ailen[brow] = nrow; \ 74a30f8f8cSSatish Balay } 75e5e170daSBarry Smith 76d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 77a30f8f8cSSatish Balay { \ 78a30f8f8cSSatish Balay brow = row/bs; \ 79a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 80a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 81a30f8f8cSSatish Balay bcol = col/bs; \ 82a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 83a30f8f8cSSatish Balay low = 0; high = nrow; \ 84a30f8f8cSSatish Balay while (high-low > 3) { \ 85a30f8f8cSSatish Balay t = (low+high)/2; \ 86a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 87a30f8f8cSSatish Balay else low = t; \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 90a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 91a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 92a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 93a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 94a30f8f8cSSatish Balay else *bap = value; \ 95a30f8f8cSSatish Balay goto b_noinsert; \ 96a30f8f8cSSatish Balay } \ 97a30f8f8cSSatish Balay } \ 98a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 99d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 100fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 101a30f8f8cSSatish Balay N = nrow++ - 1; \ 102a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 103a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 104a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 105a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 108a30f8f8cSSatish Balay rp[_i] = bcol; \ 109a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110e56f5c9eSBarry Smith B->nonzerostate++;\ 111a30f8f8cSSatish Balay b_noinsert:; \ 112a30f8f8cSSatish Balay bilen[brow] = nrow; \ 113a30f8f8cSSatish Balay } 114a30f8f8cSSatish Balay 115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 116a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 117a30f8f8cSSatish Balay */ 1184a2ae208SSatish Balay #undef __FUNCT__ 119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 121a30f8f8cSSatish Balay { 122a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 123a30f8f8cSSatish Balay MatScalar value; 124ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 125dfbe8321SBarry Smith PetscErrorCode ierr; 1261302d50aSBarry Smith PetscInt i,j,row,col; 127d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 128d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 129d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Some Variables required in the macro */ 132a30f8f8cSSatish Balay Mat A = baij->A; 133a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1341302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 135a30f8f8cSSatish Balay MatScalar *aa =a->a; 136a30f8f8cSSatish Balay 137a30f8f8cSSatish Balay Mat B = baij->B; 138a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1391302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 140a30f8f8cSSatish Balay MatScalar *ba =b->a; 141a30f8f8cSSatish Balay 1421302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1431302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 144a30f8f8cSSatish Balay MatScalar *ap,*bap; 145a30f8f8cSSatish Balay 146a30f8f8cSSatish Balay /* for stash */ 1470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1480298fd71SBarry Smith MatScalar *v_loc = NULL; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay PetscFunctionBegin; 151a30f8f8cSSatish Balay if (!baij->donotstash) { 15259ffdab8SBarry Smith if (n > baij->n_loc) { 15359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 155785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 156785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15726fbe8dcSKarl Rupp 15859ffdab8SBarry Smith baij->n_loc = n; 15959ffdab8SBarry Smith } 16059ffdab8SBarry Smith in_loc = baij->in_loc; 16159ffdab8SBarry Smith v_loc = baij->v_loc; 162a30f8f8cSSatish Balay } 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay for (i=0; i<m; i++) { 165a30f8f8cSSatish Balay if (im[i] < 0) continue; 1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 167e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 168a30f8f8cSSatish Balay #endif 169a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 170a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 171a30f8f8cSSatish Balay for (j=0; j<n; j++) { 17201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17301b2bd88SHong Zhang if (a->ignore_ltriangular) { 17401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17526fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17601b2bd88SHong Zhang } 177a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 178a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 179a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 180a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 181db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 182db4deed7SKarl Rupp else value = v[i+j*m]; 183d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 184a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 185a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 187cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 188a30f8f8cSSatish Balay #endif 189a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 190a30f8f8cSSatish Balay if (mat->was_assembled) { 191a30f8f8cSSatish Balay if (!baij->colmap) { 192ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 193a30f8f8cSSatish Balay } 194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 195a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19671730473SSatish Balay col = col - 1; 197a30f8f8cSSatish Balay #else 19871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 199a30f8f8cSSatish Balay #endif 200a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 201ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 202a30f8f8cSSatish Balay col = in[j]; 203a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 204a30f8f8cSSatish Balay B = baij->B; 205a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 206a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 207a30f8f8cSSatish Balay ba = b->a; 20871730473SSatish Balay } else col += in[j]%bs; 209a30f8f8cSSatish Balay } else col = in[j]; 210db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 211db4deed7SKarl Rupp else value = v[i+j*m]; 212d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 213a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 214a30f8f8cSSatish Balay } 215a30f8f8cSSatish Balay } 216a30f8f8cSSatish Balay } else { /* off processor entry */ 2174cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 218a30f8f8cSSatish Balay if (!baij->donotstash) { 2195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 220a30f8f8cSSatish Balay n_loc = 0; 221a30f8f8cSSatish Balay for (j=0; j<n; j++) { 222f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 223a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 224a30f8f8cSSatish Balay if (roworiented) { 225a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 226a30f8f8cSSatish Balay } else { 227a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay n_loc++; 230a30f8f8cSSatish Balay } 231b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay PetscFunctionReturn(0); 236a30f8f8cSSatish Balay } 237a30f8f8cSSatish Balay 2384a2ae208SSatish Balay #undef __FUNCT__ 23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined" 24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 24136bd2089SBarry Smith { 24236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 24336bd2089SBarry Smith PetscErrorCode ierr; 24436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 24536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 24636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 24736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 24836bd2089SBarry Smith const PetscScalar *value = v; 24936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 25036bd2089SBarry Smith 25136bd2089SBarry Smith PetscFunctionBegin; 25236bd2089SBarry Smith if (col < row) { 25336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 25436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 25536bd2089SBarry Smith } 25636bd2089SBarry Smith rp = aj + ai[row]; 25736bd2089SBarry Smith ap = aa + bs2*ai[row]; 25836bd2089SBarry Smith rmax = imax[row]; 25936bd2089SBarry Smith nrow = ailen[row]; 26036bd2089SBarry Smith value = v; 26136bd2089SBarry Smith low = 0; 26236bd2089SBarry Smith high = nrow; 26336bd2089SBarry Smith 26436bd2089SBarry Smith while (high-low > 7) { 26536bd2089SBarry Smith t = (low+high)/2; 26636bd2089SBarry Smith if (rp[t] > col) high = t; 26736bd2089SBarry Smith else low = t; 26836bd2089SBarry Smith } 26936bd2089SBarry Smith for (i=low; i<high; i++) { 27036bd2089SBarry Smith if (rp[i] > col) break; 27136bd2089SBarry Smith if (rp[i] == col) { 27236bd2089SBarry Smith bap = ap + bs2*i; 27336bd2089SBarry Smith if (roworiented) { 27436bd2089SBarry Smith if (is == ADD_VALUES) { 27536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 27636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 27736bd2089SBarry Smith bap[jj] += *value++; 27836bd2089SBarry Smith } 27936bd2089SBarry Smith } 28036bd2089SBarry Smith } else { 28136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 28236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 28336bd2089SBarry Smith bap[jj] = *value++; 28436bd2089SBarry Smith } 28536bd2089SBarry Smith } 28636bd2089SBarry Smith } 28736bd2089SBarry Smith } else { 28836bd2089SBarry Smith if (is == ADD_VALUES) { 28936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29136bd2089SBarry Smith *bap++ += *value++; 29236bd2089SBarry Smith } 29336bd2089SBarry Smith } 29436bd2089SBarry Smith } else { 29536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29736bd2089SBarry Smith *bap++ = *value++; 29836bd2089SBarry Smith } 29936bd2089SBarry Smith } 30036bd2089SBarry Smith } 30136bd2089SBarry Smith } 30236bd2089SBarry Smith goto noinsert2; 30336bd2089SBarry Smith } 30436bd2089SBarry Smith } 30536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 30636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 30736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 30836bd2089SBarry Smith N = nrow++ - 1; high++; 30936bd2089SBarry Smith /* shift up all the later entries in this row */ 31036bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 31136bd2089SBarry Smith rp[ii+1] = rp[ii]; 31236bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 31336bd2089SBarry Smith } 31436bd2089SBarry Smith if (N >= i) { 31536bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 31636bd2089SBarry Smith } 31736bd2089SBarry Smith rp[i] = col; 31836bd2089SBarry Smith bap = ap + bs2*i; 31936bd2089SBarry Smith if (roworiented) { 32036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32136bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 32236bd2089SBarry Smith bap[jj] = *value++; 32336bd2089SBarry Smith } 32436bd2089SBarry Smith } 32536bd2089SBarry Smith } else { 32636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 32836bd2089SBarry Smith *bap++ = *value++; 32936bd2089SBarry Smith } 33036bd2089SBarry Smith } 33136bd2089SBarry Smith } 33236bd2089SBarry Smith noinsert2:; 33336bd2089SBarry Smith ailen[row] = nrow; 33436bd2089SBarry Smith PetscFunctionReturn(0); 33536bd2089SBarry Smith } 33636bd2089SBarry Smith 33736bd2089SBarry Smith #undef __FUNCT__ 33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined" 33936bd2089SBarry Smith /* 34036bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 34136bd2089SBarry Smith */ 34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34336bd2089SBarry Smith { 34436bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 34536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34636bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 34736bd2089SBarry Smith PetscErrorCode ierr; 34836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 35036bd2089SBarry Smith const PetscScalar *value = v; 35136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35236bd2089SBarry Smith 35336bd2089SBarry Smith PetscFunctionBegin; 35436bd2089SBarry Smith rp = aj + ai[row]; 35536bd2089SBarry Smith ap = aa + bs2*ai[row]; 35636bd2089SBarry Smith rmax = imax[row]; 35736bd2089SBarry Smith nrow = ailen[row]; 35836bd2089SBarry Smith low = 0; 35936bd2089SBarry Smith high = nrow; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith while (high-low > 7) { 36236bd2089SBarry Smith t = (low+high)/2; 36336bd2089SBarry Smith if (rp[t] > col) high = t; 36436bd2089SBarry Smith else low = t; 36536bd2089SBarry Smith } 36636bd2089SBarry Smith for (i=low; i<high; i++) { 36736bd2089SBarry Smith if (rp[i] > col) break; 36836bd2089SBarry Smith if (rp[i] == col) { 36936bd2089SBarry Smith bap = ap + bs2*i; 37036bd2089SBarry Smith if (roworiented) { 37136bd2089SBarry Smith if (is == ADD_VALUES) { 37236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37436bd2089SBarry Smith bap[jj] += *value++; 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } 37736bd2089SBarry Smith } else { 37836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38036bd2089SBarry Smith bap[jj] = *value++; 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith if (is == ADD_VALUES) { 38636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 38736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38836bd2089SBarry Smith bap[jj] += value[jj]; 38936bd2089SBarry Smith } 39036bd2089SBarry Smith bap += bs; 39136bd2089SBarry Smith } 39236bd2089SBarry Smith } else { 39336bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 39436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39536bd2089SBarry Smith bap[jj] = value[jj]; 39636bd2089SBarry Smith } 39736bd2089SBarry Smith bap += bs; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith goto noinsert2; 40236bd2089SBarry Smith } 40336bd2089SBarry Smith } 40436bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40536bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 40636bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40736bd2089SBarry Smith N = nrow++ - 1; high++; 40836bd2089SBarry Smith /* shift up all the later entries in this row */ 40936bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 41036bd2089SBarry Smith rp[ii+1] = rp[ii]; 41136bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 41236bd2089SBarry Smith } 41336bd2089SBarry Smith if (N >= i) { 41436bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp[i] = col; 41736bd2089SBarry Smith bap = ap + bs2*i; 41836bd2089SBarry Smith if (roworiented) { 41936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 42136bd2089SBarry Smith bap[jj] = *value++; 42236bd2089SBarry Smith } 42336bd2089SBarry Smith } 42436bd2089SBarry Smith } else { 42536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42736bd2089SBarry Smith *bap++ = *value++; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith } 43036bd2089SBarry Smith } 43136bd2089SBarry Smith noinsert2:; 43236bd2089SBarry Smith ailen[row] = nrow; 43336bd2089SBarry Smith PetscFunctionReturn(0); 43436bd2089SBarry Smith } 43536bd2089SBarry Smith 43636bd2089SBarry Smith #undef __FUNCT__ 437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 43836bd2089SBarry Smith /* 43936bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 44036bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 44136bd2089SBarry Smith */ 442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 443a30f8f8cSSatish Balay { 4440880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 445f15d580aSBarry Smith const MatScalar *value; 446f15d580aSBarry Smith MatScalar *barray =baij->barray; 447ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 450899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 451d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 4520880e062SHong Zhang 453a30f8f8cSSatish Balay PetscFunctionBegin; 4540880e062SHong Zhang if (!barray) { 455785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 4560880e062SHong Zhang baij->barray = barray; 4570880e062SHong Zhang } 4580880e062SHong Zhang 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang stepval = (n-1)*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang stepval = (m-1)*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (i=0; i<m; i++) { 4650880e062SHong Zhang if (im[i] < 0) continue; 4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 467bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 4680880e062SHong Zhang #endif 4690880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4700880e062SHong Zhang row = im[i] - rstart; 4710880e062SHong Zhang for (j=0; j<n; j++) { 472f3f98c53SJed Brown if (im[i] > in[j]) { 473f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 474e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 475f3f98c53SJed Brown } 4760880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4770880e062SHong Zhang if ((roworiented) && (n == 1)) { 478f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4790880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 480f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4810880e062SHong Zhang } else { /* Here a copy is required */ 4820880e062SHong Zhang if (roworiented) { 4830880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4840880e062SHong Zhang } else { 4850880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4860880e062SHong Zhang } 4870880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4880880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4890880e062SHong Zhang *barray++ = *value++; 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang barray -=bs2; 4930880e062SHong Zhang } 4940880e062SHong Zhang 4950880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 4960880e062SHong Zhang col = in[j] - cstart; 49736bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 49826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 500bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5010880e062SHong Zhang #endif 5020880e062SHong Zhang else { 5030880e062SHong Zhang if (mat->was_assembled) { 5040880e062SHong Zhang if (!baij->colmap) { 505ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5060880e062SHong Zhang } 5070880e062SHong Zhang 5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5101302d50aSBarry Smith { PetscInt data; 5110880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 512e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5130880e062SHong Zhang } 5140880e062SHong Zhang #else 515e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5160880e062SHong Zhang #endif 5170880e062SHong Zhang #endif 5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5190880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5200880e062SHong Zhang col = (col - 1)/bs; 5210880e062SHong Zhang #else 5220880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5230880e062SHong Zhang #endif 5240880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 525ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5260880e062SHong Zhang col = in[j]; 5270880e062SHong Zhang } 52826fbe8dcSKarl Rupp } else col = in[j]; 52936bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 5300880e062SHong Zhang } 5310880e062SHong Zhang } 5320880e062SHong Zhang } else { 533bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 5340880e062SHong Zhang if (!baij->donotstash) { 5350880e062SHong Zhang if (roworiented) { 5360880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5370880e062SHong Zhang } else { 5380880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5390880e062SHong Zhang } 5400880e062SHong Zhang } 5410880e062SHong Zhang } 5420880e062SHong Zhang } 5430880e062SHong Zhang PetscFunctionReturn(0); 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 553d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 558e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 563e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data--; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 594dfbe8321SBarry Smith PetscErrorCode ierr; 595a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay if (baij->size == 1) { 599a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 600a30f8f8cSSatish Balay } else { 601a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 602785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 603a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 604a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 605a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 607ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6088f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 609a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6100b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6110b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6120b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6130b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 614899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 615d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6160b8dc8d2SHong Zhang MatScalar *v; 6170b8dc8d2SHong Zhang 618dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 619d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6200b8dc8d2SHong Zhang /* Amat */ 6210b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6220b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6230b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6240b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6250b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6260b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6270b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6280b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6290b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6300b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6310b8dc8d2SHong Zhang /* non-diagonal block */ 6320b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 6330b8dc8d2SHong Zhang } 6340b8dc8d2SHong Zhang } 6350b8dc8d2SHong Zhang } 6360b8dc8d2SHong Zhang } 6370b8dc8d2SHong Zhang /* Bmat */ 6380b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 6390b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6400b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6410b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 6420b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6430b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 6440b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6450b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6460b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6470b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6480b8dc8d2SHong Zhang rsum[grow+row] += vabs; 6490b8dc8d2SHong Zhang } 6500b8dc8d2SHong Zhang } 6510b8dc8d2SHong Zhang } 6520b8dc8d2SHong Zhang } 653ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6540b8dc8d2SHong Zhang *norm = 0.0; 655d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 6560b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 6570b8dc8d2SHong Zhang } 65874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 659f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 660a30f8f8cSSatish Balay } 661a30f8f8cSSatish Balay PetscFunctionReturn(0); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 6644a2ae208SSatish Balay #undef __FUNCT__ 6654a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 666dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 667a30f8f8cSSatish Balay { 668a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 669dfbe8321SBarry Smith PetscErrorCode ierr; 6701302d50aSBarry Smith PetscInt nstash,reallocs; 671a30f8f8cSSatish Balay 672a30f8f8cSSatish Balay PetscFunctionBegin; 67326fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 674a30f8f8cSSatish Balay 675d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 6761e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 677a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6781e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 679a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6801e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 681a30f8f8cSSatish Balay PetscFunctionReturn(0); 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay 6844a2ae208SSatish Balay #undef __FUNCT__ 6854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 686dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 687a30f8f8cSSatish Balay { 688a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 689a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 6906849ba73SBarry Smith PetscErrorCode ierr; 69113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 692e44c0bd4SBarry Smith PetscInt *row,*col; 693ace3abfcSBarry Smith PetscBool other_disassembled; 69413f74950SBarry Smith PetscMPIInt n; 695ace3abfcSBarry Smith PetscBool r1,r2,r3; 696a30f8f8cSSatish Balay MatScalar *val; 697a30f8f8cSSatish Balay 69891c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 699a30f8f8cSSatish Balay PetscFunctionBegin; 7004cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 701a30f8f8cSSatish Balay while (1) { 702a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 703a30f8f8cSSatish Balay if (!flg) break; 704a30f8f8cSSatish Balay 705a30f8f8cSSatish Balay for (i=0; i<n;) { 706a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 70726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 70826fbe8dcSKarl Rupp if (row[j] != rstart) break; 70926fbe8dcSKarl Rupp } 710a30f8f8cSSatish Balay if (j < n) ncols = j-i; 711a30f8f8cSSatish Balay else ncols = n-i; 712a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7134b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 714a30f8f8cSSatish Balay i = j; 715a30f8f8cSSatish Balay } 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 718a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 719a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 720a30f8f8cSSatish Balay restore the original flags */ 721a30f8f8cSSatish Balay r1 = baij->roworiented; 722a30f8f8cSSatish Balay r2 = a->roworiented; 72391c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 72426fbe8dcSKarl Rupp 725a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 726a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 72726fbe8dcSKarl Rupp 72891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 729a30f8f8cSSatish Balay while (1) { 730a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 731a30f8f8cSSatish Balay if (!flg) break; 732a30f8f8cSSatish Balay 733a30f8f8cSSatish Balay for (i=0; i<n;) { 734a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 73526fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 73626fbe8dcSKarl Rupp if (row[j] != rstart) break; 73726fbe8dcSKarl Rupp } 738a30f8f8cSSatish Balay if (j < n) ncols = j-i; 739a30f8f8cSSatish Balay else ncols = n-i; 7404b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 741a30f8f8cSSatish Balay i = j; 742a30f8f8cSSatish Balay } 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 74526fbe8dcSKarl Rupp 746a30f8f8cSSatish Balay baij->roworiented = r1; 747a30f8f8cSSatish Balay a->roworiented = r2; 74826fbe8dcSKarl Rupp 74991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 750a30f8f8cSSatish Balay } 751a30f8f8cSSatish Balay 752a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 756a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 757a30f8f8cSSatish Balay /* 758a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 759a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 760a30f8f8cSSatish Balay */ 761a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 762ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 763a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 764ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 765a30f8f8cSSatish Balay } 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay 768a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 76940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 772a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 773a30f8f8cSSatish Balay 77474ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77526fbe8dcSKarl Rupp 776a30f8f8cSSatish Balay baij->rowvalues = 0; 7774f9cfa9eSBarry Smith 7784f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 7794f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 780e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 78109e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 782e56f5c9eSBarry Smith } 783a30f8f8cSSatish Balay PetscFunctionReturn(0); 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay 7867da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 787dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 7889804daf3SBarry Smith #include <petscdraw.h> 7894a2ae208SSatish Balay #undef __FUNCT__ 7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7916849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 792a30f8f8cSSatish Balay { 793a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 794dfbe8321SBarry Smith PetscErrorCode ierr; 795d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 7967da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 797ace3abfcSBarry Smith PetscBool iascii,isdraw; 798b0a32e0cSBarry Smith PetscViewer sviewer; 799f3ef73ceSBarry Smith PetscViewerFormat format; 800a30f8f8cSSatish Balay 801a30f8f8cSSatish Balay PetscFunctionBegin; 802251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 803251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 80432077d6dSBarry Smith if (iascii) { 805b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 806456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 807a30f8f8cSSatish Balay MatInfo info; 808ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 809a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8101575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 8117b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 812a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 813e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 815e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 816b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8171575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 81807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 819a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 820a30f8f8cSSatish Balay PetscFunctionReturn(0); 821fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 82277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 823a30f8f8cSSatish Balay PetscFunctionReturn(0); 824c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 825c1490034SHong Zhang PetscFunctionReturn(0); 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay } 828a30f8f8cSSatish Balay 829a30f8f8cSSatish Balay if (isdraw) { 830b0a32e0cSBarry Smith PetscDraw draw; 831ace3abfcSBarry Smith PetscBool isnull; 832b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 833b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 834a30f8f8cSSatish Balay } 835a30f8f8cSSatish Balay 8367da1fb6eSBarry Smith { 837a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 838a30f8f8cSSatish Balay Mat A; 83965d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 84065d70643SHong Zhang Mat_SeqBAIJ *Bloc; 841d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 842a30f8f8cSSatish Balay MatScalar *a; 8433e219373SBarry Smith const char *matname; 844a30f8f8cSSatish Balay 845f204ca49SKris Buschelman /* Should this be the same type as mat? */ 846ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 847a30f8f8cSSatish Balay if (!rank) { 848f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 849a30f8f8cSSatish Balay } else { 850f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 851a30f8f8cSSatish Balay } 852f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 8530298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 8542b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 8553bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 856a30f8f8cSSatish Balay 857a30f8f8cSSatish Balay /* copy over the A part */ 85865d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 859a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 860785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 861a30f8f8cSSatish Balay 862a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 863e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 86426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 865a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 866e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 867a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 868dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 86926fbe8dcSKarl Rupp col++; 87026fbe8dcSKarl Rupp a += bs; 871a30f8f8cSSatish Balay } 872a30f8f8cSSatish Balay } 873a30f8f8cSSatish Balay } 874a30f8f8cSSatish Balay /* copy over the B part */ 87565d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 87665d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 877a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 878e9f7bc9eSHong Zhang 879e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 88026fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 881a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 882a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 883a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 884799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 88526fbe8dcSKarl Rupp col++; 88626fbe8dcSKarl Rupp a += bs; 887a30f8f8cSSatish Balay } 888a30f8f8cSSatish Balay } 889a30f8f8cSSatish Balay } 890a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 891a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 892a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 893a30f8f8cSSatish Balay /* 894a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 895b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 896a30f8f8cSSatish Balay */ 8973f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 898ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 8993e219373SBarry Smith if (!rank) { 900ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 9017da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 902a30f8f8cSSatish Balay } 9033f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9041575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9056bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 906a30f8f8cSSatish Balay } 907a30f8f8cSSatish Balay PetscFunctionReturn(0); 908a30f8f8cSSatish Balay } 909a30f8f8cSSatish Balay 9104a2ae208SSatish Balay #undef __FUNCT__ 9114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 912dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 913a30f8f8cSSatish Balay { 914dfbe8321SBarry Smith PetscErrorCode ierr; 915ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 916a30f8f8cSSatish Balay 917a30f8f8cSSatish Balay PetscFunctionBegin; 918251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 919251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 920251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 921251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 92232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 923a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 924a30f8f8cSSatish Balay } 925a30f8f8cSSatish Balay PetscFunctionReturn(0); 926a30f8f8cSSatish Balay } 927a30f8f8cSSatish Balay 9284a2ae208SSatish Balay #undef __FUNCT__ 9294a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 930dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 931a30f8f8cSSatish Balay { 932a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 933dfbe8321SBarry Smith PetscErrorCode ierr; 934a30f8f8cSSatish Balay 935a30f8f8cSSatish Balay PetscFunctionBegin; 936a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 937d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 938a30f8f8cSSatish Balay #endif 939a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 940a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 9416bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 9426bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 943a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 9446bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 945a30f8f8cSSatish Balay #else 94605b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 947a30f8f8cSSatish Balay #endif 94805b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 9496bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 9506bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 9516bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 9526bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 9536bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 9546bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 9556bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 9566bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 9575755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 95805b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 95905b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 9606bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 9616bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 9626bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 963ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 96405b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 965a30f8f8cSSatish Balay #endif 96659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 96759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 968899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 969bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 970901853e0SKris Buschelman 971dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 972bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 973bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 974bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 975bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 976bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 9776214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 9786214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 9796214f412SHong Zhang #endif 980a30f8f8cSSatish Balay PetscFunctionReturn(0); 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay 9834a2ae208SSatish Balay #undef __FUNCT__ 984547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 985547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 986547795f9SHong Zhang { 987547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 988547795f9SHong Zhang PetscErrorCode ierr; 989547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 9906de40e93SBarry Smith PetscScalar *from; 9916de40e93SBarry Smith const PetscScalar *x; 992547795f9SHong Zhang 993547795f9SHong Zhang PetscFunctionBegin; 994547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 995e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 996547795f9SHong Zhang 997547795f9SHong Zhang /* diagonal part */ 998547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 999547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1000547795f9SHong Zhang 1001547795f9SHong Zhang /* subdiagonal part */ 1002547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1003547795f9SHong Zhang 1004547795f9SHong Zhang /* copy x into the vec slvec0 */ 1005547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10066de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1007547795f9SHong Zhang 1008547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1009547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 10106de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1011547795f9SHong Zhang 1012547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1013547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1014547795f9SHong Zhang /* supperdiagonal part */ 1015547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1016547795f9SHong Zhang PetscFunctionReturn(0); 1017547795f9SHong Zhang } 1018547795f9SHong Zhang 1019547795f9SHong Zhang #undef __FUNCT__ 1020a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 1021dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1022a9d4b620SHong Zhang { 1023a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1024dfbe8321SBarry Smith PetscErrorCode ierr; 1025d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1026d9ca1df4SBarry Smith PetscScalar *from; 1027d9ca1df4SBarry Smith const PetscScalar *x; 1028a9d4b620SHong Zhang 1029a9d4b620SHong Zhang PetscFunctionBegin; 1030a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1031e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1032a9d4b620SHong Zhang 1033a9d4b620SHong Zhang /* diagonal part */ 1034a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1035fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1036a9d4b620SHong Zhang 1037a9d4b620SHong Zhang /* subdiagonal part */ 1038a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1039fc165ae2SBarry Smith 1040a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10411ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1042d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1043a9d4b620SHong Zhang 1044fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1045fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1046d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1047fc165ae2SBarry Smith 1048fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1049ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1050a9d4b620SHong Zhang /* supperdiagonal part */ 1051a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1052a9d4b620SHong Zhang PetscFunctionReturn(0); 1053a9d4b620SHong Zhang } 1054a9d4b620SHong Zhang 1055a9d4b620SHong Zhang #undef __FUNCT__ 105640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 1057dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1058a30f8f8cSSatish Balay { 1059a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1060dfbe8321SBarry Smith PetscErrorCode ierr; 10611302d50aSBarry Smith PetscInt nt; 1062a30f8f8cSSatish Balay 1063a30f8f8cSSatish Balay PetscFunctionBegin; 1064a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1065e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1066e7e72b3dSBarry Smith 1067a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1068e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 106965d70643SHong Zhang 1070ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1071b941877fSHong Zhang /* do diagonal part */ 1072b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1073b941877fSHong Zhang /* do supperdiagonal part */ 1074ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1075b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1076b941877fSHong Zhang /* do subdiagonal part */ 1077b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1078ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1079ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1080a30f8f8cSSatish Balay PetscFunctionReturn(0); 1081a30f8f8cSSatish Balay } 1082a30f8f8cSSatish Balay 10834a2ae208SSatish Balay #undef __FUNCT__ 10844a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1085dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1086a30f8f8cSSatish Balay { 1087de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1088dfbe8321SBarry Smith PetscErrorCode ierr; 1089d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1090d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1091d9ca1df4SBarry Smith const PetscScalar *x; 1092a9d4b620SHong Zhang 1093a9d4b620SHong Zhang PetscFunctionBegin; 1094a9d4b620SHong Zhang /* 1095ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 10960ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1097a9d4b620SHong Zhang */ 1098a9d4b620SHong Zhang /* diagonal part */ 1099a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11002dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1101a9d4b620SHong Zhang 1102a9d4b620SHong Zhang /* subdiagonal part */ 1103a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1104a9d4b620SHong Zhang 1105a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11061ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1107d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1108a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 11091ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1110a9d4b620SHong Zhang 1111ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1112d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1113ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1114a9d4b620SHong Zhang 1115a9d4b620SHong Zhang /* supperdiagonal part */ 1116a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1117a9d4b620SHong Zhang PetscFunctionReturn(0); 1118a9d4b620SHong Zhang } 1119a9d4b620SHong Zhang 1120a9d4b620SHong Zhang #undef __FUNCT__ 1121a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1122dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1123a9d4b620SHong Zhang { 1124a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1125dfbe8321SBarry Smith PetscErrorCode ierr; 1126a30f8f8cSSatish Balay 1127a30f8f8cSSatish Balay PetscFunctionBegin; 1128ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1129b941877fSHong Zhang /* do diagonal part */ 1130b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1131b941877fSHong Zhang /* do supperdiagonal part */ 1132ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1133de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1134de8b6608SHong Zhang 1135b941877fSHong Zhang /* do subdiagonal part */ 1136a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1137ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1138ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay PetscFunctionReturn(0); 1140a30f8f8cSSatish Balay } 1141a30f8f8cSSatish Balay 1142a30f8f8cSSatish Balay /* 1143a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1144a30f8f8cSSatish Balay diagonal block 1145a30f8f8cSSatish Balay */ 11464a2ae208SSatish Balay #undef __FUNCT__ 11474a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1148dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1149a30f8f8cSSatish Balay { 1150a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1151dfbe8321SBarry Smith PetscErrorCode ierr; 1152a30f8f8cSSatish Balay 1153a30f8f8cSSatish Balay PetscFunctionBegin; 1154e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1155a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1156a30f8f8cSSatish Balay PetscFunctionReturn(0); 1157a30f8f8cSSatish Balay } 1158a30f8f8cSSatish Balay 11594a2ae208SSatish Balay #undef __FUNCT__ 11604a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1161f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1162a30f8f8cSSatish Balay { 1163a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1164dfbe8321SBarry Smith PetscErrorCode ierr; 1165a30f8f8cSSatish Balay 1166a30f8f8cSSatish Balay PetscFunctionBegin; 1167f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1168f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1169a30f8f8cSSatish Balay PetscFunctionReturn(0); 1170a30f8f8cSSatish Balay } 1171a30f8f8cSSatish Balay 11724a2ae208SSatish Balay #undef __FUNCT__ 11734a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11741302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1175a30f8f8cSSatish Balay { 1176d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1177d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1178d0d4cfc2SHong Zhang PetscErrorCode ierr; 1179d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1180d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1181899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1182d0d4cfc2SHong Zhang 1183a30f8f8cSSatish Balay PetscFunctionBegin; 1184e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1185d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1186d0d4cfc2SHong Zhang 1187d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1188d0d4cfc2SHong Zhang /* 1189d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1190d0d4cfc2SHong Zhang */ 1191d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1192d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1193d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1194d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1195d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 119626fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1197d0d4cfc2SHong Zhang } 1198dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1199d0d4cfc2SHong Zhang } 1200d0d4cfc2SHong Zhang 1201e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1202d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1203d0d4cfc2SHong Zhang 1204d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1205d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1206d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1207d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1208d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1209d0d4cfc2SHong Zhang nztot = nzA + nzB; 1210d0d4cfc2SHong Zhang 1211d0d4cfc2SHong Zhang cmap = mat->garray; 1212d0d4cfc2SHong Zhang if (v || idx) { 1213d0d4cfc2SHong Zhang if (nztot) { 1214d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1215d0d4cfc2SHong Zhang PetscInt imark = -1; 1216d0d4cfc2SHong Zhang if (v) { 1217d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1218d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1219d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1220d0d4cfc2SHong Zhang else break; 1221d0d4cfc2SHong Zhang } 1222d0d4cfc2SHong Zhang imark = i; 1223d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1224d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1225d0d4cfc2SHong Zhang } 1226d0d4cfc2SHong Zhang if (idx) { 1227d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1228d0d4cfc2SHong Zhang if (imark > -1) { 1229d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1230d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1231d0d4cfc2SHong Zhang } 1232d0d4cfc2SHong Zhang } else { 1233d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 123426fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1235d0d4cfc2SHong Zhang else break; 1236d0d4cfc2SHong Zhang } 1237d0d4cfc2SHong Zhang imark = i; 1238d0d4cfc2SHong Zhang } 1239d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1240d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1241d0d4cfc2SHong Zhang } 1242d0d4cfc2SHong Zhang } else { 1243d0d4cfc2SHong Zhang if (idx) *idx = 0; 1244d0d4cfc2SHong Zhang if (v) *v = 0; 1245d0d4cfc2SHong Zhang } 1246d0d4cfc2SHong Zhang } 1247d0d4cfc2SHong Zhang *nz = nztot; 1248d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1249d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1250a30f8f8cSSatish Balay PetscFunctionReturn(0); 1251a30f8f8cSSatish Balay } 1252a30f8f8cSSatish Balay 12534a2ae208SSatish Balay #undef __FUNCT__ 12544a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 12551302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1256a30f8f8cSSatish Balay { 1257a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1258a30f8f8cSSatish Balay 1259a30f8f8cSSatish Balay PetscFunctionBegin; 1260e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1261a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1262a30f8f8cSSatish Balay PetscFunctionReturn(0); 1263a30f8f8cSSatish Balay } 1264a30f8f8cSSatish Balay 12654a2ae208SSatish Balay #undef __FUNCT__ 1266d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1267d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1268d0d4cfc2SHong Zhang { 1269d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1270d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1271d0d4cfc2SHong Zhang 1272d0d4cfc2SHong Zhang PetscFunctionBegin; 1273d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1274d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1275d0d4cfc2SHong Zhang } 1276d0d4cfc2SHong Zhang #undef __FUNCT__ 1277d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1278d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1279d0d4cfc2SHong Zhang { 1280d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1281d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1282d0d4cfc2SHong Zhang 1283d0d4cfc2SHong Zhang PetscFunctionBegin; 1284d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1285d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1286d0d4cfc2SHong Zhang } 1287d0d4cfc2SHong Zhang 1288d0d4cfc2SHong Zhang #undef __FUNCT__ 128999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 129099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 129199cafbc1SBarry Smith { 129299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 129399cafbc1SBarry Smith PetscErrorCode ierr; 129499cafbc1SBarry Smith 129599cafbc1SBarry Smith PetscFunctionBegin; 129699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 129799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 129899cafbc1SBarry Smith PetscFunctionReturn(0); 129999cafbc1SBarry Smith } 130099cafbc1SBarry Smith 130199cafbc1SBarry Smith #undef __FUNCT__ 130299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 130399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 130499cafbc1SBarry Smith { 130599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 130699cafbc1SBarry Smith PetscErrorCode ierr; 130799cafbc1SBarry Smith 130899cafbc1SBarry Smith PetscFunctionBegin; 130999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 131099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 131199cafbc1SBarry Smith PetscFunctionReturn(0); 131299cafbc1SBarry Smith } 131399cafbc1SBarry Smith 131436032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 131536032a97SHong Zhang Input: isrow - distributed(parallel), 131636032a97SHong Zhang iscol_local - locally owned (seq) 131736032a97SHong Zhang */ 131899cafbc1SBarry Smith #undef __FUNCT__ 131936032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 132036032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13218f46ffcaSHong Zhang { 13228f46ffcaSHong Zhang PetscErrorCode ierr; 13238f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13248f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 132536032a97SHong Zhang 132636032a97SHong Zhang PetscFunctionBegin; 13278f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13288f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13291098a8e8SHong Zhang if (sz1 > sz2) { 13301098a8e8SHong Zhang *flg = PETSC_FALSE; 13311098a8e8SHong Zhang PetscFunctionReturn(0); 13321098a8e8SHong Zhang } 13338f46ffcaSHong Zhang 13348f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 13358f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13368f46ffcaSHong Zhang 13378f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 13388f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 13398f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 13408f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 13418f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 13428f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 13438f46ffcaSHong Zhang 13448f46ffcaSHong Zhang nmatch=0; 13458f46ffcaSHong Zhang k = 0; 13468f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 13478f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 13488f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13498f46ffcaSHong Zhang k = j; nmatch++; 13508f46ffcaSHong Zhang break; 13518f46ffcaSHong Zhang } 13528f46ffcaSHong Zhang } 13538f46ffcaSHong Zhang } 13548f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 13558f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13568f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 13578f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 13581098a8e8SHong Zhang if (nmatch < sz1) { 13591098a8e8SHong Zhang *flg = PETSC_FALSE; 13601098a8e8SHong Zhang } else { 13611098a8e8SHong Zhang *flg = PETSC_TRUE; 13621098a8e8SHong Zhang } 136336032a97SHong Zhang PetscFunctionReturn(0); 13648f46ffcaSHong Zhang } 136536032a97SHong Zhang 136636032a97SHong Zhang #undef __FUNCT__ 136736032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 136836032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 136936032a97SHong Zhang { 137036032a97SHong Zhang PetscErrorCode ierr; 137136032a97SHong Zhang IS iscol_local; 137236032a97SHong Zhang PetscInt csize; 137336032a97SHong Zhang PetscBool isequal; 137436032a97SHong Zhang 137536032a97SHong Zhang PetscFunctionBegin; 137636032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 137736032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 137836032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 137936032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 138036032a97SHong Zhang } else { 138136032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 138236032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 138336032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 13848f46ffcaSHong Zhang } 13858f46ffcaSHong Zhang 13868f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 138736032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 13888f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 13898f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 13908f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 13918f46ffcaSHong Zhang } 13928f46ffcaSHong Zhang PetscFunctionReturn(0); 13938f46ffcaSHong Zhang } 13948f46ffcaSHong Zhang 13958f46ffcaSHong Zhang #undef __FUNCT__ 13964a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1397dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1398a30f8f8cSSatish Balay { 1399a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1400dfbe8321SBarry Smith PetscErrorCode ierr; 1401a30f8f8cSSatish Balay 1402a30f8f8cSSatish Balay PetscFunctionBegin; 1403a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1404a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1405a30f8f8cSSatish Balay PetscFunctionReturn(0); 1406a30f8f8cSSatish Balay } 1407a30f8f8cSSatish Balay 14084a2ae208SSatish Balay #undef __FUNCT__ 14094a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1410dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1411a30f8f8cSSatish Balay { 1412a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1413a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1414dfbe8321SBarry Smith PetscErrorCode ierr; 1415a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1416a30f8f8cSSatish Balay 1417a30f8f8cSSatish Balay PetscFunctionBegin; 1418d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141926fbe8dcSKarl Rupp 1420a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 142126fbe8dcSKarl Rupp 1422a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1423a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 142426fbe8dcSKarl Rupp 1425a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 142626fbe8dcSKarl Rupp 1427a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1428a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1429a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1430a30f8f8cSSatish Balay info->nz_used = isend[0]; 1431a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1432a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1433a30f8f8cSSatish Balay info->memory = isend[3]; 1434a30f8f8cSSatish Balay info->mallocs = isend[4]; 1435a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1436ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 143726fbe8dcSKarl Rupp 1438a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1439a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1440a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1441a30f8f8cSSatish Balay info->memory = irecv[3]; 1442a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1443a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1444ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 144526fbe8dcSKarl Rupp 1446a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1447a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1448a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1449a30f8f8cSSatish Balay info->memory = irecv[3]; 1450a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1451f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1452a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1453a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1454a30f8f8cSSatish Balay info->factor_mallocs = 0; 1455a30f8f8cSSatish Balay PetscFunctionReturn(0); 1456a30f8f8cSSatish Balay } 1457a30f8f8cSSatish Balay 14584a2ae208SSatish Balay #undef __FUNCT__ 14594a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1460ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1461a30f8f8cSSatish Balay { 1462a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1463d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1464dfbe8321SBarry Smith PetscErrorCode ierr; 1465a30f8f8cSSatish Balay 1466a30f8f8cSSatish Balay PetscFunctionBegin; 1467e98b92d7SKris Buschelman switch (op) { 1468512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1469e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1471a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1472e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14734e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14744e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1475e98b92d7SKris Buschelman break; 1476e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 14774e0d8c25SBarry Smith a->roworiented = flg; 147826fbe8dcSKarl Rupp 14794e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14804e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1481e98b92d7SKris Buschelman break; 14824e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1483290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1484e98b92d7SKris Buschelman break; 1485e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14864e0d8c25SBarry Smith a->donotstash = flg; 1487e98b92d7SKris Buschelman break; 1488e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 14894e0d8c25SBarry Smith a->ht_flag = flg; 1490e98b92d7SKris Buschelman break; 14919a4540c5SBarry Smith case MAT_HERMITIAN: 1492e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1493eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 149426fbe8dcSKarl Rupp 1495547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1496eeffb40dSHong Zhang break; 1497ffa07934SHong Zhang case MAT_SPD: 1498ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1499ffa07934SHong Zhang A->spd = flg; 1500ffa07934SHong Zhang if (flg) { 1501ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1502ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1503ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1504ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1505ffa07934SHong Zhang } 1506ffa07934SHong Zhang break; 150777e54ba9SKris Buschelman case MAT_SYMMETRIC: 1508eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1509eeffb40dSHong Zhang break; 151077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1511eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1512eeffb40dSHong Zhang break; 15139a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1514e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1515290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 151677e54ba9SKris Buschelman break; 1517d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15184e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1519d0d4cfc2SHong Zhang break; 1520d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15214e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1522d0d4cfc2SHong Zhang break; 1523d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15244e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1525d0d4cfc2SHong Zhang break; 1526e98b92d7SKris Buschelman default: 1527e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1528a30f8f8cSSatish Balay } 1529a30f8f8cSSatish Balay PetscFunctionReturn(0); 1530a30f8f8cSSatish Balay } 1531a30f8f8cSSatish Balay 15324a2ae208SSatish Balay #undef __FUNCT__ 15338115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1534fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1535a30f8f8cSSatish Balay { 1536dfbe8321SBarry Smith PetscErrorCode ierr; 15376e111a19SKarl Rupp 1538a30f8f8cSSatish Balay PetscFunctionBegin; 1539815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1540999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1541fc4dec0aSBarry Smith } 15428115998fSBarry Smith PetscFunctionReturn(0); 1543a30f8f8cSSatish Balay } 1544a30f8f8cSSatish Balay 15454a2ae208SSatish Balay #undef __FUNCT__ 15464a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1547dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1548a30f8f8cSSatish Balay { 1549a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1550a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1551dfbe8321SBarry Smith PetscErrorCode ierr; 15525e90f9d9SHong Zhang PetscInt nv,m,n; 1553ace3abfcSBarry Smith PetscBool flg; 1554a30f8f8cSSatish Balay 1555a30f8f8cSSatish Balay PetscFunctionBegin; 1556a30f8f8cSSatish Balay if (ll != rr) { 1557b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1558e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1559a30f8f8cSSatish Balay } 1560b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1561b3bf805bSHong Zhang 15625e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1563e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1564b3bf805bSHong Zhang 15655e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1566e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 15675e90f9d9SHong Zhang 1568ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15695e90f9d9SHong Zhang 15705e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 15710298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 15725e90f9d9SHong Zhang 15735e90f9d9SHong Zhang /* scale the diagonal part */ 1574a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1575a30f8f8cSSatish Balay 15765e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1577ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15780298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1579a30f8f8cSSatish Balay PetscFunctionReturn(0); 1580a30f8f8cSSatish Balay } 1581a30f8f8cSSatish Balay 15824a2ae208SSatish Balay #undef __FUNCT__ 15834a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1584dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1585a30f8f8cSSatish Balay { 1586f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1587dfbe8321SBarry Smith PetscErrorCode ierr; 1588a30f8f8cSSatish Balay 1589a30f8f8cSSatish Balay PetscFunctionBegin; 1590a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1591a30f8f8cSSatish Balay PetscFunctionReturn(0); 1592a30f8f8cSSatish Balay } 1593a30f8f8cSSatish Balay 15946849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1595a30f8f8cSSatish Balay 15964a2ae208SSatish Balay #undef __FUNCT__ 15974a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1598ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1599a30f8f8cSSatish Balay { 1600a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1601a30f8f8cSSatish Balay Mat a,b,c,d; 1602ace3abfcSBarry Smith PetscBool flg; 1603dfbe8321SBarry Smith PetscErrorCode ierr; 1604a30f8f8cSSatish Balay 1605a30f8f8cSSatish Balay PetscFunctionBegin; 1606a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1607a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1608a30f8f8cSSatish Balay 1609a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1610abc0a331SBarry Smith if (flg) { 1611a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1612a30f8f8cSSatish Balay } 1613ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1614a30f8f8cSSatish Balay PetscFunctionReturn(0); 1615a30f8f8cSSatish Balay } 1616a30f8f8cSSatish Balay 16174a2ae208SSatish Balay #undef __FUNCT__ 16183c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 16193c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16203c896bc6SHong Zhang { 16213c896bc6SHong Zhang PetscErrorCode ierr; 16223c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16233c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16243c896bc6SHong Zhang 16253c896bc6SHong Zhang PetscFunctionBegin; 16263c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16273c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1628d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16293c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1630d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16313c896bc6SHong Zhang } else { 16323c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16333c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 16343c896bc6SHong Zhang } 16353c896bc6SHong Zhang PetscFunctionReturn(0); 16363c896bc6SHong Zhang } 16373c896bc6SHong Zhang 16383c896bc6SHong Zhang #undef __FUNCT__ 16394994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 16404994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1641273d9f13SBarry Smith { 1642dfbe8321SBarry Smith PetscErrorCode ierr; 1643273d9f13SBarry Smith 1644273d9f13SBarry Smith PetscFunctionBegin; 1645535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1646273d9f13SBarry Smith PetscFunctionReturn(0); 1647273d9f13SBarry Smith } 1648a5e6ed63SBarry Smith 16494fe895cdSHong Zhang #undef __FUNCT__ 16504fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 16514fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16524fe895cdSHong Zhang { 16534fe895cdSHong Zhang PetscErrorCode ierr; 16544fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16554fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16564fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16574fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16584fe895cdSHong Zhang 16594fe895cdSHong Zhang PetscFunctionBegin; 16604fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16614fe895cdSHong Zhang PetscScalar alpha = a; 16624fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 16634fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1664c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 16658b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 16664fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 16674fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1668c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 16698b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1670a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1671ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1672ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1673ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1674ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 16754fe895cdSHong Zhang } else { 16764de5dceeSHong Zhang Mat B; 16774de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 16784de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1679d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 16804de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 16814de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 16824de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 16834de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 16844de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 16854de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 16864de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 16874de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 16884de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 16894de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 16904de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 16914de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 169228be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 16934de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 16944de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1695d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 16964de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 16974fe895cdSHong Zhang } 16984fe895cdSHong Zhang PetscFunctionReturn(0); 16994fe895cdSHong Zhang } 17004fe895cdSHong Zhang 1701a5e6ed63SBarry Smith #undef __FUNCT__ 1702a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 17031302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1704a5e6ed63SBarry Smith { 17056849ba73SBarry Smith PetscErrorCode ierr; 17061302d50aSBarry Smith PetscInt i; 170768906dc2SToby Isaac PetscBool flg,sorted; 1708a5e6ed63SBarry Smith 17096849ba73SBarry Smith PetscFunctionBegin; 171068906dc2SToby Isaac for (i = 0; i < n; i++) { 171168906dc2SToby Isaac ierr = ISSorted(irow[i],&sorted);CHKERRQ(ierr); 171268906dc2SToby Isaac if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Row index set %d not sorted",i); 171368906dc2SToby Isaac ierr = ISSorted(icol[i],&sorted);CHKERRQ(ierr); 171468906dc2SToby Isaac if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Column index set %d not sorted",i); 171568906dc2SToby Isaac } 17164dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1717a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1718a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 17194dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 17204dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1721a5e6ed63SBarry Smith } 17224dcd73b1SHong Zhang } 1723a5e6ed63SBarry Smith PetscFunctionReturn(0); 1724a5e6ed63SBarry Smith } 1725a5e6ed63SBarry Smith 17267d68702bSBarry Smith #undef __FUNCT__ 17277d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ" 17287d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17297d68702bSBarry Smith { 17307d68702bSBarry Smith PetscErrorCode ierr; 17317d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17326f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17337d68702bSBarry Smith 17347d68702bSBarry Smith PetscFunctionBegin; 17356f33a894SBarry Smith if (!Y->preallocated) { 17367d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 17376f33a894SBarry Smith } else if (!aij->nz) { 17386f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 17397d68702bSBarry Smith } 17407d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 17417d68702bSBarry Smith PetscFunctionReturn(0); 17427d68702bSBarry Smith } 17437d68702bSBarry Smith 1744*3b49f96aSBarry Smith #undef __FUNCT__ 1745*3b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPISBAIJ" 1746*3b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 1747*3b49f96aSBarry Smith { 1748*3b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1749*3b49f96aSBarry Smith PetscErrorCode ierr; 1750*3b49f96aSBarry Smith 1751*3b49f96aSBarry Smith PetscFunctionBegin; 1752*3b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 1753*3b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 1754*3b49f96aSBarry Smith if (d) { 1755*3b49f96aSBarry Smith PetscInt rstart; 1756*3b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 1757*3b49f96aSBarry Smith *d += rstart/A->rmap->bs; 1758*3b49f96aSBarry Smith 1759*3b49f96aSBarry Smith } 1760*3b49f96aSBarry Smith PetscFunctionReturn(0); 1761*3b49f96aSBarry Smith } 1762*3b49f96aSBarry Smith 1763*3b49f96aSBarry Smith 1764a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17653964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1766a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1767a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1768a9d4b620SHong Zhang MatMult_MPISBAIJ, 176997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1770431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1771431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1772a30f8f8cSSatish Balay 0, 1773a30f8f8cSSatish Balay 0, 1774a30f8f8cSSatish Balay 0, 177597304618SKris Buschelman /* 10*/ 0, 1776a30f8f8cSSatish Balay 0, 1777a30f8f8cSSatish Balay 0, 177841f059aeSBarry Smith MatSOR_MPISBAIJ, 1779a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 178097304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1781a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1782a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1783a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1784a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 178597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1786a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1787a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1788a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1789d519adbfSMatthew Knepley /* 24*/ 0, 1790a30f8f8cSSatish Balay 0, 1791a30f8f8cSSatish Balay 0, 1792a30f8f8cSSatish Balay 0, 1793a30f8f8cSSatish Balay 0, 17944994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1795b5df2d14SHong Zhang 0, 1796a30f8f8cSSatish Balay 0, 1797a30f8f8cSSatish Balay 0, 1798a30f8f8cSSatish Balay 0, 1799d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1800a30f8f8cSSatish Balay 0, 1801a30f8f8cSSatish Balay 0, 1802a30f8f8cSSatish Balay 0, 1803a30f8f8cSSatish Balay 0, 1804d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1805a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1806d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1807a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18083c896bc6SHong Zhang MatCopy_MPISBAIJ, 1809d519adbfSMatthew Knepley /* 44*/ 0, 1810a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18117d68702bSBarry Smith MatShift_MPISBAIJ, 1812a30f8f8cSSatish Balay 0, 1813a30f8f8cSSatish Balay 0, 1814f73d5cc4SBarry Smith /* 49*/ 0, 1815a30f8f8cSSatish Balay 0, 1816a30f8f8cSSatish Balay 0, 1817a30f8f8cSSatish Balay 0, 1818a30f8f8cSSatish Balay 0, 1819d519adbfSMatthew Knepley /* 54*/ 0, 1820a30f8f8cSSatish Balay 0, 1821a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1822a30f8f8cSSatish Balay 0, 1823a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18248f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 1825a30f8f8cSSatish Balay 0, 1826a30f8f8cSSatish Balay 0, 1827357abbc8SBarry Smith 0, 182824d5174aSHong Zhang 0, 1829d519adbfSMatthew Knepley /* 64*/ 0, 183024d5174aSHong Zhang 0, 183124d5174aSHong Zhang 0, 183224d5174aSHong Zhang 0, 183324d5174aSHong Zhang 0, 1834d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 183524d5174aSHong Zhang 0, 183697304618SKris Buschelman 0, 183797304618SKris Buschelman 0, 183897304618SKris Buschelman 0, 1839d519adbfSMatthew Knepley /* 74*/ 0, 184097304618SKris Buschelman 0, 184197304618SKris Buschelman 0, 184297304618SKris Buschelman 0, 184397304618SKris Buschelman 0, 1844d519adbfSMatthew Knepley /* 79*/ 0, 184597304618SKris Buschelman 0, 184697304618SKris Buschelman 0, 184797304618SKris Buschelman 0, 18485bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1849d519adbfSMatthew Knepley /* 84*/ 0, 1850865e5f61SKris Buschelman 0, 1851865e5f61SKris Buschelman 0, 1852865e5f61SKris Buschelman 0, 1853865e5f61SKris Buschelman 0, 1854d519adbfSMatthew Knepley /* 89*/ 0, 1855865e5f61SKris Buschelman 0, 1856865e5f61SKris Buschelman 0, 1857865e5f61SKris Buschelman 0, 1858865e5f61SKris Buschelman 0, 1859d519adbfSMatthew Knepley /* 94*/ 0, 1860865e5f61SKris Buschelman 0, 1861865e5f61SKris Buschelman 0, 186299cafbc1SBarry Smith 0, 186399cafbc1SBarry Smith 0, 1864d519adbfSMatthew Knepley /* 99*/ 0, 186599cafbc1SBarry Smith 0, 186699cafbc1SBarry Smith 0, 186799cafbc1SBarry Smith 0, 186899cafbc1SBarry Smith 0, 1869d519adbfSMatthew Knepley /*104*/ 0, 187099cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1871d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1872d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 187395936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 187495936485SShri Abhyankar /*109*/ 0, 187595936485SShri Abhyankar 0, 187695936485SShri Abhyankar 0, 187795936485SShri Abhyankar 0, 1878*3b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 187995936485SShri Abhyankar /*114*/ 0, 188095936485SShri Abhyankar 0, 188195936485SShri Abhyankar 0, 188295936485SShri Abhyankar 0, 188395936485SShri Abhyankar 0, 188495936485SShri Abhyankar /*119*/ 0, 188595936485SShri Abhyankar 0, 188695936485SShri Abhyankar 0, 18873964eb88SJed Brown 0, 18883964eb88SJed Brown 0, 18893964eb88SJed Brown /*124*/ 0, 18903964eb88SJed Brown 0, 18913964eb88SJed Brown 0, 18923964eb88SJed Brown 0, 18933964eb88SJed Brown 0, 18943964eb88SJed Brown /*129*/ 0, 18953964eb88SJed Brown 0, 18963964eb88SJed Brown 0, 18973964eb88SJed Brown 0, 18983964eb88SJed Brown 0, 18993964eb88SJed Brown /*134*/ 0, 19003964eb88SJed Brown 0, 19013964eb88SJed Brown 0, 19023964eb88SJed Brown 0, 19033964eb88SJed Brown 0, 19043964eb88SJed Brown /*139*/ 0, 1905f9426fe0SMark Adams 0, 190659f5e6ceSHong Zhang 0, 190759f5e6ceSHong Zhang 0, 190859f5e6ceSHong Zhang 0, 190959f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 191099cafbc1SBarry Smith }; 1911a30f8f8cSSatish Balay 19124a2ae208SSatish Balay #undef __FUNCT__ 19134a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 191411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1915a30f8f8cSSatish Balay { 1916a30f8f8cSSatish Balay PetscFunctionBegin; 1917a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1918a30f8f8cSSatish Balay PetscFunctionReturn(0); 1919a30f8f8cSSatish Balay } 1920a30f8f8cSSatish Balay 19214a2ae208SSatish Balay #undef __FUNCT__ 1922a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1923b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1924a23d5eceSKris Buschelman { 1925a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1926dfbe8321SBarry Smith PetscErrorCode ierr; 1927535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1928a23d5eceSKris Buschelman 1929a23d5eceSKris Buschelman PetscFunctionBegin; 193033d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 193126283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 193226283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1933e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1934899cda47SBarry Smith 1935a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1936d0f46423SBarry Smith mbs = B->rmap->n/bs; 1937d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1938c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1939a23d5eceSKris Buschelman 1940d0f46423SBarry Smith B->rmap->bs = bs; 1941a23d5eceSKris Buschelman b->bs2 = bs*bs; 1942a23d5eceSKris Buschelman b->mbs = mbs; 1943a23d5eceSKris Buschelman b->Mbs = Mbs; 1944de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1945de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1946a23d5eceSKris Buschelman 1947a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1948d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1949a23d5eceSKris Buschelman } 1950d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1951d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1952a23d5eceSKris Buschelman 1953d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1954d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1955a23d5eceSKris Buschelman 1956526dfc15SBarry Smith if (!B->preallocated) { 1957f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1958d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 19599c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 19603bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1961f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1962d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 19634aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 19643bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1965ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1966526dfc15SBarry Smith } 1967a23d5eceSKris Buschelman 1968526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1969526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 197026fbe8dcSKarl Rupp 1971526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1972a23d5eceSKris Buschelman PetscFunctionReturn(0); 1973a23d5eceSKris Buschelman } 1974a23d5eceSKris Buschelman 1975dfb205c3SBarry Smith #undef __FUNCT__ 1976dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1977dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1978dfb205c3SBarry Smith { 1979dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1980dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1981dfb205c3SBarry Smith const PetscInt *JJ =0; 1982dfb205c3SBarry Smith PetscScalar *values=0; 1983dfb205c3SBarry Smith PetscErrorCode ierr; 1984dfb205c3SBarry Smith 1985dfb205c3SBarry Smith PetscFunctionBegin; 1986ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1987dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1988dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1989dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1990dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1991e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1992dfb205c3SBarry Smith m = B->rmap->n/bs; 1993dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1994dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1995dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1996dfb205c3SBarry Smith 1997dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1998dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1999dfb205c3SBarry Smith for (i=0; i<m; i++) { 2000dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2001dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2002dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 2003dfb205c3SBarry Smith JJ = jj + ii[i]; 2004dfb205c3SBarry Smith for (j=0; j<nz; j++) { 2005dfb205c3SBarry Smith if (*JJ >= cstart) break; 2006dfb205c3SBarry Smith JJ++; 2007dfb205c3SBarry Smith } 2008dfb205c3SBarry Smith d = 0; 2009dfb205c3SBarry Smith for (; j<nz; j++) { 2010dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2011dfb205c3SBarry Smith d++; 2012dfb205c3SBarry Smith } 2013dfb205c3SBarry Smith d_nnz[i] = d; 2014dfb205c3SBarry Smith o_nnz[i] = nz - d; 2015dfb205c3SBarry Smith } 2016dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2017dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2018dfb205c3SBarry Smith 2019dfb205c3SBarry Smith values = (PetscScalar*)V; 2020dfb205c3SBarry Smith if (!values) { 2021785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2022dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2023dfb205c3SBarry Smith } 2024dfb205c3SBarry Smith for (i=0; i<m; i++) { 2025dfb205c3SBarry Smith PetscInt row = i + rstart; 2026dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2027dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2028dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2029dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2030dfb205c3SBarry Smith } 2031dfb205c3SBarry Smith 2032dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2033dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2034dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20357827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2036dfb205c3SBarry Smith PetscFunctionReturn(0); 2037dfb205c3SBarry Smith } 2038dfb205c3SBarry Smith 20390bad9183SKris Buschelman /*MC 2040fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2041828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2042828413b8SBarry Smith the matrix is stored. 2043828413b8SBarry Smith 2044828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2045828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20460bad9183SKris Buschelman 20470bad9183SKris Buschelman Options Database Keys: 20480bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 20490bad9183SKris Buschelman 20500bad9183SKris Buschelman Level: beginner 20510bad9183SKris Buschelman 20520bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 20530bad9183SKris Buschelman M*/ 20540bad9183SKris Buschelman 20558cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 2056aa5a9175SDahai Guo 2057a23d5eceSKris Buschelman #undef __FUNCT__ 20584a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 20598cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2060b5df2d14SHong Zhang { 2061b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2062dfbe8321SBarry Smith PetscErrorCode ierr; 206394ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2064b5df2d14SHong Zhang 2065b5df2d14SHong Zhang PetscFunctionBegin; 2066b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2067b0a32e0cSBarry Smith B->data = (void*)b; 2068b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2069b5df2d14SHong Zhang 2070b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2071b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2072b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2073b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 207426fbe8dcSKarl Rupp 2075ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2076ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2077b5df2d14SHong Zhang 2078b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2079854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2080b5df2d14SHong Zhang 2081b5df2d14SHong Zhang /* build cache for off array entries formed */ 2082ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 208326fbe8dcSKarl Rupp 2084b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 20850298fd71SBarry Smith b->colmap = NULL; 20860298fd71SBarry Smith b->garray = NULL; 2087b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2088b5df2d14SHong Zhang 2089b5df2d14SHong Zhang /* stuff used in block assembly */ 2090b5df2d14SHong Zhang b->barray = 0; 2091b5df2d14SHong Zhang 2092b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2093b5df2d14SHong Zhang b->lvec = 0; 2094b5df2d14SHong Zhang b->Mvctx = 0; 209540781036SHong Zhang b->slvec0 = 0; 209640781036SHong Zhang b->slvec0b = 0; 209740781036SHong Zhang b->slvec1 = 0; 209840781036SHong Zhang b->slvec1a = 0; 209940781036SHong Zhang b->slvec1b = 0; 210040781036SHong Zhang b->sMvctx = 0; 2101b5df2d14SHong Zhang 2102b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2103b5df2d14SHong Zhang b->rowindices = 0; 2104b5df2d14SHong Zhang b->rowvalues = 0; 2105b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2106b5df2d14SHong Zhang 2107b5df2d14SHong Zhang /* hash table stuff */ 2108b5df2d14SHong Zhang b->ht = 0; 2109b5df2d14SHong Zhang b->hd = 0; 2110b5df2d14SHong Zhang b->ht_size = 0; 2111b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2112b5df2d14SHong Zhang b->ht_fact = 0; 2113b5df2d14SHong Zhang b->ht_total_ct = 0; 2114b5df2d14SHong Zhang b->ht_insert_ct = 0; 2115b5df2d14SHong Zhang 21167a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 21177a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21187a868f3eSHong Zhang 211959ffdab8SBarry Smith b->in_loc = 0; 212059ffdab8SBarry Smith b->v_loc = 0; 212159ffdab8SBarry Smith b->n_loc = 0; 212294ae4db5SBarry Smith 2123bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2124bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2125bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 2126bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2127bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 2128bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 21296214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21306214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 21316214f412SHong Zhang #endif 2132aa5a9175SDahai Guo 213323ce1328SBarry Smith B->symmetric = PETSC_TRUE; 213423ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 213523ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 213623ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 213726fbe8dcSKarl Rupp 213817667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 213994ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 214094ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 214194ae4db5SBarry Smith if (flg) { 214294ae4db5SBarry Smith PetscReal fact = 1.39; 214394ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 214494ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 214594ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 214694ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 214794ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 214894ae4db5SBarry Smith } 214994ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2150b5df2d14SHong Zhang PetscFunctionReturn(0); 2151b5df2d14SHong Zhang } 2152b5df2d14SHong Zhang 2153209238afSKris Buschelman /*MC 2154002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2155209238afSKris Buschelman 2156209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2157209238afSKris Buschelman and MATMPISBAIJ otherwise. 2158209238afSKris Buschelman 2159209238afSKris Buschelman Options Database Keys: 2160209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2161209238afSKris Buschelman 2162209238afSKris Buschelman Level: beginner 2163209238afSKris Buschelman 2164209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2165209238afSKris Buschelman M*/ 2166209238afSKris Buschelman 21674a2ae208SSatish Balay #undef __FUNCT__ 21684a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 2169b5df2d14SHong Zhang /*@C 2170b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2171b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2172b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2173b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2174b5df2d14SHong Zhang 2175b5df2d14SHong Zhang Collective on Mat 2176b5df2d14SHong Zhang 2177b5df2d14SHong Zhang Input Parameters: 21781c4f3114SJed Brown + B - the matrix 2179bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2180bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2181b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2182b5df2d14SHong Zhang submatrix (same for all local rows) 2183b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 21846d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 21850298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 218695742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2187b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2188b5df2d14SHong Zhang submatrix (same for all local rows). 2189b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2190c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 21910298fd71SBarry Smith (possibly different for each block row) or NULL. 2192b5df2d14SHong Zhang 2193b5df2d14SHong Zhang 2194b5df2d14SHong Zhang Options Database Keys: 2195b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2196b5df2d14SHong Zhang block calculations (much slower) 2197b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 2198b5df2d14SHong Zhang 2199b5df2d14SHong Zhang Notes: 2200b5df2d14SHong Zhang 2201b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2202b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2203b5df2d14SHong Zhang 220449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 220549a6f317SBarry Smith 2206b5df2d14SHong Zhang Storage Information: 2207b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2208b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2209b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2210b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2211b5df2d14SHong Zhang 2212b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2213b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 22140298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2215b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2216b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2217b5df2d14SHong Zhang 2218aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2219aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2220aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2221aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2222aa95bbe8SBarry Smith 2223b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2224b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2225b5df2d14SHong Zhang 2226b5df2d14SHong Zhang .vb 2227b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2228a4b1a0f6SJed Brown -------------------------- 2229c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2230c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2231c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2232a4b1a0f6SJed Brown -------------------------- 2233b5df2d14SHong Zhang .ve 2234b5df2d14SHong Zhang 2235b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2236b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22376d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22386d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2239b5df2d14SHong Zhang 22406d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22416d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2242c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2243c2fc9fa9SBarry Smith 2244b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2245b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2246b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2247b5df2d14SHong Zhang matrices. 2248b5df2d14SHong Zhang 2249b5df2d14SHong Zhang Level: intermediate 2250b5df2d14SHong Zhang 2251b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2252b5df2d14SHong Zhang 2253ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2254b5df2d14SHong Zhang @*/ 22557087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2256b5df2d14SHong Zhang { 22574ac538c5SBarry Smith PetscErrorCode ierr; 2258b5df2d14SHong Zhang 2259b5df2d14SHong Zhang PetscFunctionBegin; 22606ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22616ba663aaSJed Brown PetscValidType(B,1); 22626ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 22634ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2264b5df2d14SHong Zhang PetscFunctionReturn(0); 2265b5df2d14SHong Zhang } 2266b5df2d14SHong Zhang 22674a2ae208SSatish Balay #undef __FUNCT__ 226869b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2269a30f8f8cSSatish Balay /*@C 227069b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2271a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2272a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2273a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2274a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2275a30f8f8cSSatish Balay 2276a30f8f8cSSatish Balay Collective on MPI_Comm 2277a30f8f8cSSatish Balay 2278a30f8f8cSSatish Balay Input Parameters: 2279a30f8f8cSSatish Balay + comm - MPI communicator 2280bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2281bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2282a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2283a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2284a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2285a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2286a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2287a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2288a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2289a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2290a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2291a30f8f8cSSatish Balay submatrix (same for all local rows) 2292a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 22936d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 22940298fd71SBarry Smith (possibly different for each block block row) or NULL. 229595742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 229695742e49SBarry Smith set its value even if it is zero. 2297a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2298a30f8f8cSSatish Balay submatrix (same for all local rows). 2299a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2300a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23010298fd71SBarry Smith each block row) or NULL. 2302a30f8f8cSSatish Balay 2303a30f8f8cSSatish Balay Output Parameter: 2304a30f8f8cSSatish Balay . A - the matrix 2305a30f8f8cSSatish Balay 2306a30f8f8cSSatish Balay Options Database Keys: 2307a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2308a30f8f8cSSatish Balay block calculations (much slower) 2309a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2310a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2311a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2312a30f8f8cSSatish Balay 2313175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2314ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2315175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2316175b88e8SBarry Smith 2317a30f8f8cSSatish Balay Notes: 2318d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23196d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2320d1be2dadSMatthew Knepley 2321a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2322a30f8f8cSSatish Balay (possibly both). 2323a30f8f8cSSatish Balay 2324a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2325a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2326a30f8f8cSSatish Balay 232749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 232849a6f317SBarry Smith 2329a30f8f8cSSatish Balay Storage Information: 2330a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2331a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2332a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2333a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2334a30f8f8cSSatish Balay 2335a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2336a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 23370298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2338a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2339a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2340a30f8f8cSSatish Balay 2341a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2342a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2343a30f8f8cSSatish Balay 2344a30f8f8cSSatish Balay .vb 2345a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2346a4b1a0f6SJed Brown -------------------------- 2347c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2348c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2349c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2350a4b1a0f6SJed Brown -------------------------- 2351a30f8f8cSSatish Balay .ve 2352a30f8f8cSSatish Balay 2353a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2354a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23556d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23566d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2357a30f8f8cSSatish Balay 23586d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23596d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2360a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2361a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2362a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2363a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2364a30f8f8cSSatish Balay matrices. 2365a30f8f8cSSatish Balay 2366a30f8f8cSSatish Balay Level: intermediate 2367a30f8f8cSSatish Balay 2368a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2369a30f8f8cSSatish Balay 237069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2371a30f8f8cSSatish Balay @*/ 2372a30f8f8cSSatish Balay 237369b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2374a30f8f8cSSatish Balay { 23756849ba73SBarry Smith PetscErrorCode ierr; 23761302d50aSBarry Smith PetscMPIInt size; 2377a30f8f8cSSatish Balay 2378a30f8f8cSSatish Balay PetscFunctionBegin; 2379f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2380f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2381273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2382273d9f13SBarry Smith if (size > 1) { 2383b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2384b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2385273d9f13SBarry Smith } else { 2386273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2387273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2388273d9f13SBarry Smith } 2389a30f8f8cSSatish Balay PetscFunctionReturn(0); 2390a30f8f8cSSatish Balay } 2391a30f8f8cSSatish Balay 2392a30f8f8cSSatish Balay 23934a2ae208SSatish Balay #undef __FUNCT__ 23944a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 23956849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2396a30f8f8cSSatish Balay { 2397a30f8f8cSSatish Balay Mat mat; 2398a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2399dfbe8321SBarry Smith PetscErrorCode ierr; 2400d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2401387bc808SHong Zhang PetscScalar *array; 2402a30f8f8cSSatish Balay 2403a30f8f8cSSatish Balay PetscFunctionBegin; 2404a30f8f8cSSatish Balay *newmat = 0; 240526fbe8dcSKarl Rupp 2406ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2407d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 24087adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 24091d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 24101e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 24111e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2412e1b6402fSHong Zhang 2413d5f3da31SBarry Smith mat->factortype = matin->factortype; 2414273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 241582327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24167fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24177fff6886SHong Zhang 2418b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2419a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2420a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2421a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2422a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2423a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2424a30f8f8cSSatish Balay 2425899cda47SBarry Smith 2426a30f8f8cSSatish Balay a->size = oldmat->size; 2427a30f8f8cSSatish Balay a->rank = oldmat->rank; 2428a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2429a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2430a30f8f8cSSatish Balay a->rowindices = 0; 2431a30f8f8cSSatish Balay a->rowvalues = 0; 2432a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2433a30f8f8cSSatish Balay a->barray = 0; 2434899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2435899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2436899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2437899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2438a30f8f8cSSatish Balay 2439a30f8f8cSSatish Balay /* hash table stuff */ 2440a30f8f8cSSatish Balay a->ht = 0; 2441a30f8f8cSSatish Balay a->hd = 0; 2442a30f8f8cSSatish Balay a->ht_size = 0; 2443a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2444a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2445a30f8f8cSSatish Balay a->ht_total_ct = 0; 2446a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2447a30f8f8cSSatish Balay 2448899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2449a30f8f8cSSatish Balay if (oldmat->colmap) { 2450a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2451a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2452a30f8f8cSSatish Balay #else 2453854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 24543bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 24551302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2456a30f8f8cSSatish Balay #endif 2457a30f8f8cSSatish Balay } else a->colmap = 0; 2458387bc808SHong Zhang 2459a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2460785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 24613bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 24621302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2463a30f8f8cSSatish Balay } else a->garray = 0; 2464a30f8f8cSSatish Balay 2465ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2466a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 24673bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2468a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 24693bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 247082327fa8SHong Zhang 247182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 24723bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 247382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 24743bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2475387bc808SHong Zhang 2476387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 24771ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2478778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2479778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 24801ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 24811ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2482778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 24831ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 24843bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 24853bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 24863bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 24873bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 24883bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2489387bc808SHong Zhang 2490387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2491387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2492387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 24933bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 249482327fa8SHong Zhang 2495a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 24963bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2497a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 24983bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2499140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2500a30f8f8cSSatish Balay *newmat = mat; 2501a30f8f8cSSatish Balay PetscFunctionReturn(0); 2502a30f8f8cSSatish Balay } 2503a30f8f8cSSatish Balay 25044a2ae208SSatish Balay #undef __FUNCT__ 25055bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2506112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 250795936485SShri Abhyankar { 250895936485SShri Abhyankar PetscErrorCode ierr; 250995936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 251095936485SShri Abhyankar PetscScalar *vals,*buf; 2511ce94432eSBarry Smith MPI_Comm comm; 251295936485SShri Abhyankar MPI_Status status; 2513adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2514adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 251595936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 25163059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 251795936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2518461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 251995936485SShri Abhyankar int fd; 252095936485SShri Abhyankar 252195936485SShri Abhyankar PetscFunctionBegin; 2522c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2523c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2524ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 25250298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 25260298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 252795936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 25283059b6faSBarry Smith if (bs < 0) bs = 1; 252995936485SShri Abhyankar 253095936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 253195936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 253295936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 25335872f025SBarry Smith if (!rank) { 253495936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 253595936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 253695936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 253795936485SShri Abhyankar } 253895936485SShri Abhyankar 253995936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 254026fbe8dcSKarl Rupp M = header[1]; 254126fbe8dcSKarl Rupp N = header[2]; 254295936485SShri Abhyankar 254395936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2544461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2545461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 254695936485SShri Abhyankar 254795936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 254895936485SShri Abhyankar 254995936485SShri Abhyankar /* 255095936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 255195936485SShri Abhyankar divisible by the blocksize 255295936485SShri Abhyankar */ 255395936485SShri Abhyankar Mbs = M/bs; 255495936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 255595936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 255695936485SShri Abhyankar else Mbs++; 255795936485SShri Abhyankar if (extra_rows &&!rank) { 255895936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 255995936485SShri Abhyankar } 256095936485SShri Abhyankar 256195936485SShri Abhyankar /* determine ownership of all rows */ 256295936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 256395936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 256495936485SShri Abhyankar m = mbs*bs; 256595936485SShri Abhyankar } else { /* User Set */ 256695936485SShri Abhyankar m = newmat->rmap->n; 256795936485SShri Abhyankar mbs = m/bs; 256895936485SShri Abhyankar } 2569dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 25704dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 257195936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 257295936485SShri Abhyankar rowners[0] = 0; 257395936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 257495936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 257595936485SShri Abhyankar rstart = rowners[rank]; 257695936485SShri Abhyankar rend = rowners[rank+1]; 257795936485SShri Abhyankar 257895936485SShri Abhyankar /* distribute row lengths to all processors */ 2579785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 258095936485SShri Abhyankar if (!rank) { 2581854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 258295936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 258395936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2584785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 258595936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 258695936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 258795936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 258895936485SShri Abhyankar } else { 258995936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 259095936485SShri Abhyankar } 259195936485SShri Abhyankar 259295936485SShri Abhyankar if (!rank) { /* procs[0] */ 259395936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2594785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 259595936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 259695936485SShri Abhyankar for (i=0; i<size; i++) { 259795936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 259895936485SShri Abhyankar procsnz[i] += rowlengths[j]; 259995936485SShri Abhyankar } 260095936485SShri Abhyankar } 260195936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 260295936485SShri Abhyankar 260395936485SShri Abhyankar /* determine max buffer needed and allocate it */ 260495936485SShri Abhyankar maxnz = 0; 260595936485SShri Abhyankar for (i=0; i<size; i++) { 260695936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 260795936485SShri Abhyankar } 2608785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 260995936485SShri Abhyankar 261095936485SShri Abhyankar /* read in my part of the matrix column indices */ 261195936485SShri Abhyankar nz = procsnz[0]; 2612785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 261395936485SShri Abhyankar mycols = ibuf; 261495936485SShri Abhyankar if (size == 1) nz -= extra_rows; 261595936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 261626fbe8dcSKarl Rupp if (size == 1) { 261726fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 261826fbe8dcSKarl Rupp } 261995936485SShri Abhyankar 262095936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 262195936485SShri Abhyankar for (i=1; i<size-1; i++) { 262295936485SShri Abhyankar nz = procsnz[i]; 262395936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 262495936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 262595936485SShri Abhyankar } 262695936485SShri Abhyankar /* read in the stuff for the last proc */ 262795936485SShri Abhyankar if (size != 1) { 262895936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 262995936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 263095936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 263195936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 263295936485SShri Abhyankar } 263395936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 263495936485SShri Abhyankar } else { /* procs[i], i>0 */ 263595936485SShri Abhyankar /* determine buffer space needed for message */ 263695936485SShri Abhyankar nz = 0; 263726fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2638785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 263995936485SShri Abhyankar mycols = ibuf; 264095936485SShri Abhyankar /* receive message of column indices*/ 264195936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 264295936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 264395936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 264495936485SShri Abhyankar } 264595936485SShri Abhyankar 264695936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2647dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2648dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 264995936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 265095936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 265195936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 265295936485SShri Abhyankar rowcount = 0; 265395936485SShri Abhyankar nzcount = 0; 265495936485SShri Abhyankar for (i=0; i<mbs; i++) { 265595936485SShri Abhyankar dcount = 0; 265695936485SShri Abhyankar odcount = 0; 265795936485SShri Abhyankar for (j=0; j<bs; j++) { 265895936485SShri Abhyankar kmax = locrowlens[rowcount]; 265995936485SShri Abhyankar for (k=0; k<kmax; k++) { 266095936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 266195936485SShri Abhyankar if (!mask[tmp]) { 266295936485SShri Abhyankar mask[tmp] = 1; 266395936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 266495936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 266595936485SShri Abhyankar } 266695936485SShri Abhyankar } 266795936485SShri Abhyankar rowcount++; 266895936485SShri Abhyankar } 266995936485SShri Abhyankar 267095936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 267195936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 267295936485SShri Abhyankar 267395936485SShri Abhyankar /* zero out the mask elements we set */ 267495936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 267595936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 267695936485SShri Abhyankar } 267795936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 267895936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 26796816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 268095936485SShri Abhyankar 268195936485SShri Abhyankar if (!rank) { 2682785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 268395936485SShri Abhyankar /* read in my part of the matrix numerical values */ 268495936485SShri Abhyankar nz = procsnz[0]; 268595936485SShri Abhyankar vals = buf; 268695936485SShri Abhyankar mycols = ibuf; 268795936485SShri Abhyankar if (size == 1) nz -= extra_rows; 268895936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 268926fbe8dcSKarl Rupp if (size == 1) { 269026fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 269126fbe8dcSKarl Rupp } 269295936485SShri Abhyankar 269395936485SShri Abhyankar /* insert into matrix */ 269495936485SShri Abhyankar jj = rstart*bs; 269595936485SShri Abhyankar for (i=0; i<m; i++) { 269695936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 269795936485SShri Abhyankar mycols += locrowlens[i]; 269895936485SShri Abhyankar vals += locrowlens[i]; 269995936485SShri Abhyankar jj++; 270095936485SShri Abhyankar } 270195936485SShri Abhyankar 270295936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 270395936485SShri Abhyankar for (i=1; i<size-1; i++) { 270495936485SShri Abhyankar nz = procsnz[i]; 270595936485SShri Abhyankar vals = buf; 270695936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 270795936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 270895936485SShri Abhyankar } 270995936485SShri Abhyankar /* the last proc */ 271095936485SShri Abhyankar if (size != 1) { 271195936485SShri Abhyankar nz = procsnz[i] - extra_rows; 271295936485SShri Abhyankar vals = buf; 271395936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 271495936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 271595936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 271695936485SShri Abhyankar } 271795936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 271895936485SShri Abhyankar 271995936485SShri Abhyankar } else { 272095936485SShri Abhyankar /* receive numeric values */ 2721785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 272295936485SShri Abhyankar 272395936485SShri Abhyankar /* receive message of values*/ 272495936485SShri Abhyankar vals = buf; 272595936485SShri Abhyankar mycols = ibuf; 272695936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 272795936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 272895936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 272995936485SShri Abhyankar 273095936485SShri Abhyankar /* insert into matrix */ 273195936485SShri Abhyankar jj = rstart*bs; 273295936485SShri Abhyankar for (i=0; i<m; i++) { 273395936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 273495936485SShri Abhyankar mycols += locrowlens[i]; 273595936485SShri Abhyankar vals += locrowlens[i]; 273695936485SShri Abhyankar jj++; 273795936485SShri Abhyankar } 273895936485SShri Abhyankar } 273995936485SShri Abhyankar 274095936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 274195936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 274295936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 274395936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 274495936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 274595936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 274695936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 274795936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 274895936485SShri Abhyankar PetscFunctionReturn(0); 274995936485SShri Abhyankar } 275095936485SShri Abhyankar 275195936485SShri Abhyankar #undef __FUNCT__ 27524a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2753dcf5cc72SBarry Smith /*XXXXX@ 2754a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2755a30f8f8cSSatish Balay 2756a30f8f8cSSatish Balay Input Parameters: 2757a30f8f8cSSatish Balay . mat - the matrix 2758a30f8f8cSSatish Balay . fact - factor 2759a30f8f8cSSatish Balay 2760c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2761a30f8f8cSSatish Balay 2762a30f8f8cSSatish Balay Level: advanced 2763a30f8f8cSSatish Balay 2764a30f8f8cSSatish Balay Notes: 2765a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2766a30f8f8cSSatish Balay 2767a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2768a30f8f8cSSatish Balay 2769a30f8f8cSSatish Balay .seealso: MatSetOption() 2770dcf5cc72SBarry Smith @XXXXX*/ 2771dcf5cc72SBarry Smith 277224d5174aSHong Zhang 27734a2ae208SSatish Balay #undef __FUNCT__ 2774985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2775985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 277624d5174aSHong Zhang { 277724d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2778f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2779ca54ac64SHong Zhang PetscReal atmp; 278087828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2781dfbe8321SBarry Smith PetscErrorCode ierr; 27821302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 27831302d50aSBarry Smith PetscMPIInt rank,size; 27841302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 278587828ca2SBarry Smith PetscScalar *va; 27868a1c53f2SBarry Smith MatScalar *ba; 2787f4c0e9e4SHong Zhang MPI_Status stat; 278824d5174aSHong Zhang 278924d5174aSHong Zhang PetscFunctionBegin; 2790e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 27910298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 27921ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2793f4c0e9e4SHong Zhang 2794ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2795ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2796f4c0e9e4SHong Zhang 2797d0f46423SBarry Smith bs = A->rmap->bs; 2798f4c0e9e4SHong Zhang mbs = a->mbs; 2799f4c0e9e4SHong Zhang Mbs = a->Mbs; 2800f4c0e9e4SHong Zhang ba = b->a; 2801f4c0e9e4SHong Zhang bi = b->i; 2802f4c0e9e4SHong Zhang bj = b->j; 2803f4c0e9e4SHong Zhang 2804f4c0e9e4SHong Zhang /* find ownerships */ 2805d0f46423SBarry Smith rowners_bs = A->rmap->range; 2806f4c0e9e4SHong Zhang 2807f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2808785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2809ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2810f4c0e9e4SHong Zhang 2811f4c0e9e4SHong Zhang /* row_max for B */ 2812b8475685SHong Zhang if (rank != size-1) { 2813f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2814f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2815f4c0e9e4SHong Zhang brow = bs*i; 2816f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2817f4c0e9e4SHong Zhang bcol = bs*(*bj); 2818f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2819ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 282004d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2821f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2822f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2823ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2824ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2825f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2826f4c0e9e4SHong Zhang } 2827f4c0e9e4SHong Zhang } 2828f4c0e9e4SHong Zhang bj++; 2829f4c0e9e4SHong Zhang } 2830f4c0e9e4SHong Zhang } 2831f4c0e9e4SHong Zhang 2832f4c0e9e4SHong Zhang /* send values to its owners */ 2833f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2834f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2835ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2836ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2837ca54ac64SHong Zhang } 2838f4c0e9e4SHong Zhang } 2839f4c0e9e4SHong Zhang 2840f4c0e9e4SHong Zhang /* receive values */ 2841ca54ac64SHong Zhang if (rank) { 2842f4c0e9e4SHong Zhang rvalues = work; 2843ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2844f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2845ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2846f4c0e9e4SHong Zhang /* process values */ 2847f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2848ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2849f4c0e9e4SHong Zhang } 2850f4c0e9e4SHong Zhang } 2851ca54ac64SHong Zhang } 2852f4c0e9e4SHong Zhang 28531ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2854ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 285524d5174aSHong Zhang PetscFunctionReturn(0); 285624d5174aSHong Zhang } 28572798e883SHong Zhang 28582798e883SHong Zhang #undef __FUNCT__ 285941f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 286041f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 28612798e883SHong Zhang { 28622798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2863dfbe8321SBarry Smith PetscErrorCode ierr; 2864d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 28653649974fSBarry Smith PetscScalar *x,*ptr,*from; 2866ffe4fb16SHong Zhang Vec bb1; 28673649974fSBarry Smith const PetscScalar *b; 2868ffe4fb16SHong Zhang 2869ffe4fb16SHong Zhang PetscFunctionBegin; 2870e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2871e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2872ffe4fb16SHong Zhang 2873a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 287441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2875a2b30743SBarry Smith PetscFunctionReturn(0); 2876a2b30743SBarry Smith } 2877a2b30743SBarry Smith 2878ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2879ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 288041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2881ffe4fb16SHong Zhang its--; 2882ffe4fb16SHong Zhang } 2883ffe4fb16SHong Zhang 2884ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2885ffe4fb16SHong Zhang while (its--) { 2886ffe4fb16SHong Zhang 2887ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2888ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2889ffe4fb16SHong Zhang 2890ffe4fb16SHong Zhang /* copy xx into slvec0a */ 28911ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 28921ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2893ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 28941ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2895ffe4fb16SHong Zhang 2896efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2897ffe4fb16SHong Zhang 2898ffe4fb16SHong Zhang /* copy bb into slvec1a */ 28991ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 29003649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2901ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 29021ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2903ffe4fb16SHong Zhang 2904ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2905fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2906ffe4fb16SHong Zhang 2907ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 29081ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2909a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2910ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2911ffe4fb16SHong Zhang 2912ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2913ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2914ffe4fb16SHong Zhang 2915ffe4fb16SHong Zhang /* local diagonal sweep */ 291641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2917ffe4fb16SHong Zhang } 29186bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2919fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 292041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2921fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 292241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2923fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2924fa22f6d0SBarry Smith Vec xx1; 2925ace3abfcSBarry Smith PetscBool hasop; 292620f1ed55SBarry Smith const PetscScalar *diag; 2927887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 292820f1ed55SBarry Smith PetscInt i,n; 2929fa22f6d0SBarry Smith 2930fa22f6d0SBarry Smith if (!mat->xx1) { 2931fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2932fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2933fa22f6d0SBarry Smith } 2934fa22f6d0SBarry Smith xx1 = mat->xx1; 2935fa22f6d0SBarry Smith bb1 = mat->bb1; 2936fa22f6d0SBarry Smith 293741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2938fa22f6d0SBarry Smith 2939fa22f6d0SBarry Smith if (!mat->diag) { 2940effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 29412a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2942fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2943fa22f6d0SBarry Smith } 2944fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2945fa22f6d0SBarry Smith 2946fa22f6d0SBarry Smith if (hasop) { 2947fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2948887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 294920f1ed55SBarry Smith } else { 295020f1ed55SBarry Smith /* 295120f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 295220f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2953887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 295420f1ed55SBarry Smith */ 295520f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29563649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29573649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 295820f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 295920f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2960887ee2caSBarry Smith if (omega == 1.0) { 296126fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 296220f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2963887ee2caSBarry Smith } else { 296426fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2965887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2966887ee2caSBarry Smith } 296720f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29683649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29693649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 297020f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 297120f1ed55SBarry Smith } 2972fa22f6d0SBarry Smith 2973fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2974fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2975fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2976fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2977fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2978fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2979fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2980fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2981fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2982fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2983effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2984fa22f6d0SBarry Smith 2985fa22f6d0SBarry Smith /* local sweep */ 298641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2987fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2988f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2989ffe4fb16SHong Zhang PetscFunctionReturn(0); 2990ffe4fb16SHong Zhang } 2991ffe4fb16SHong Zhang 2992ffe4fb16SHong Zhang #undef __FUNCT__ 299341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 299441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2995ffe4fb16SHong Zhang { 2996ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2997dfbe8321SBarry Smith PetscErrorCode ierr; 29982798e883SHong Zhang Vec lvec1,bb1; 29992798e883SHong Zhang 30002798e883SHong Zhang PetscFunctionBegin; 3001e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3002e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 30032798e883SHong Zhang 3004c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 30052798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 300641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 30072798e883SHong Zhang its--; 30082798e883SHong Zhang } 30092798e883SHong Zhang 30102798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 30112798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 30122798e883SHong Zhang while (its--) { 3013ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30142798e883SHong Zhang 30152798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 30162798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3017efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 30182798e883SHong Zhang 3019ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30202798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3021ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30222798e883SHong Zhang 30232798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3024efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 30252798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 30262798e883SHong Zhang 3027ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30282798e883SHong Zhang 3029c14dc6b6SHong Zhang /* diagonal sweep */ 303041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 30312798e883SHong Zhang } 30326bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 30336bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 30346bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 30352798e883SHong Zhang PetscFunctionReturn(0); 30362798e883SHong Zhang } 30372798e883SHong Zhang 3038dfb205c3SBarry Smith #undef __FUNCT__ 3039dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 3040dfb205c3SBarry Smith /*@ 3041dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3042dfb205c3SBarry Smith CSR format the local rows. 3043dfb205c3SBarry Smith 3044dfb205c3SBarry Smith Collective on MPI_Comm 3045dfb205c3SBarry Smith 3046dfb205c3SBarry Smith Input Parameters: 3047dfb205c3SBarry Smith + comm - MPI communicator 3048dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3049dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3050dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3051dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3052dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3053dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3054dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3055dfb205c3SBarry Smith . i - row indices 3056dfb205c3SBarry Smith . j - column indices 3057dfb205c3SBarry Smith - a - matrix values 3058dfb205c3SBarry Smith 3059dfb205c3SBarry Smith Output Parameter: 3060dfb205c3SBarry Smith . mat - the matrix 3061dfb205c3SBarry Smith 3062dfb205c3SBarry Smith Level: intermediate 3063dfb205c3SBarry Smith 3064dfb205c3SBarry Smith Notes: 3065dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3066dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3067dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3068dfb205c3SBarry Smith 3069dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3070dfb205c3SBarry Smith 3071dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3072dfb205c3SBarry Smith 3073dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 307469b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3075dfb205c3SBarry Smith @*/ 30767087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3077dfb205c3SBarry Smith { 3078dfb205c3SBarry Smith PetscErrorCode ierr; 3079dfb205c3SBarry Smith 3080dfb205c3SBarry Smith 3081dfb205c3SBarry Smith PetscFunctionBegin; 3082f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3083dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3084dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3085dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3086dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3087dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3088dfb205c3SBarry Smith PetscFunctionReturn(0); 3089dfb205c3SBarry Smith } 3090dfb205c3SBarry Smith 3091dfb205c3SBarry Smith 3092dfb205c3SBarry Smith #undef __FUNCT__ 3093dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 3094dfb205c3SBarry Smith /*@C 3095dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 3096dfb205c3SBarry Smith (the default parallel PETSc format). 3097dfb205c3SBarry Smith 3098dfb205c3SBarry Smith Collective on MPI_Comm 3099dfb205c3SBarry Smith 3100dfb205c3SBarry Smith Input Parameters: 31011c4f3114SJed Brown + B - the matrix 3102dfb205c3SBarry Smith . bs - the block size 3103dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3104dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3105dfb205c3SBarry Smith - v - optional values in the matrix 3106dfb205c3SBarry Smith 3107dfb205c3SBarry Smith Level: developer 3108dfb205c3SBarry Smith 3109dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3110dfb205c3SBarry Smith 311169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3112dfb205c3SBarry Smith @*/ 31137087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3114dfb205c3SBarry Smith { 31154ac538c5SBarry Smith PetscErrorCode ierr; 3116dfb205c3SBarry Smith 3117dfb205c3SBarry Smith PetscFunctionBegin; 31184ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3119dfb205c3SBarry Smith PetscFunctionReturn(0); 3120dfb205c3SBarry Smith } 3121dfb205c3SBarry Smith 3122de4b53ebSHong Zhang #undef __FUNCT__ 312310c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 312410c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 31254dcd73b1SHong Zhang { 31264dcd73b1SHong Zhang PetscErrorCode ierr; 312710c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 312810c56fdeSHong Zhang PetscInt *indx; 312910c56fdeSHong Zhang PetscScalar *values; 3130dfb205c3SBarry Smith 31314dcd73b1SHong Zhang PetscFunctionBegin; 31324dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 313310c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 313410c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 313510c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 313610c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 31374dcd73b1SHong Zhang 313810c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 313910c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 314010c56fdeSHong Zhang if (n == PETSC_DECIDE) { 314110c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 314210c56fdeSHong Zhang } 314310c56fdeSHong Zhang /* Check sum(n) = Nbs */ 314410c56fdeSHong Zhang ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 314510c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 314610c56fdeSHong Zhang 314710c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 314810c56fdeSHong Zhang rstart -= mbs; 31494dcd73b1SHong Zhang 31504dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 315110c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 3152e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 315310c56fdeSHong Zhang for (i=0; i<mbs; i++) { 31544dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 31554dcd73b1SHong Zhang nnz = nnz/bs; 31564dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 31574dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 31584dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 31594dcd73b1SHong Zhang } 3160e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 31614dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 31624dcd73b1SHong Zhang 31634dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 316410c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 31654dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 31664dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 31674dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 31684dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 31694dcd73b1SHong Zhang } 31704dcd73b1SHong Zhang 317110c56fdeSHong Zhang /* numeric phase */ 31724dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 317310c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 31744dcd73b1SHong Zhang 3175e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 31764dcd73b1SHong Zhang for (i=0; i<m; i++) { 31774dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31784dcd73b1SHong Zhang Ii = i + rstart; 317910c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 31804dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31814dcd73b1SHong Zhang } 3182e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 318310c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 318410c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31854dcd73b1SHong Zhang PetscFunctionReturn(0); 31864dcd73b1SHong Zhang } 3187