xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 3bd0feec79b03ea9962a396f7f5a3fd54ed2f2f5)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10b147fbf3SStefano Zampini 
11b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
12b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
13b147fbf3SStefano Zampini {
14b147fbf3SStefano Zampini   Mat            preallocator;
15b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
16b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
17b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
18b147fbf3SStefano Zampini   PetscErrorCode ierr;
19b147fbf3SStefano Zampini 
20b147fbf3SStefano Zampini   PetscFunctionBegin;
21b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
23b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
24b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
25b147fbf3SStefano Zampini     ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr);
26b147fbf3SStefano Zampini     if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
27b147fbf3SStefano Zampini   }
28b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
29b147fbf3SStefano Zampini   ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr);
30b147fbf3SStefano Zampini   ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr);
31b147fbf3SStefano Zampini   ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr);
32b147fbf3SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr);
33b147fbf3SStefano Zampini   ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr);
34b147fbf3SStefano Zampini   ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr);
35b147fbf3SStefano Zampini   ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr);
36b147fbf3SStefano Zampini   ierr = MatSetUp(preallocator);CHKERRQ(ierr);
37b147fbf3SStefano Zampini   ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr);
38b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
39b147fbf3SStefano Zampini     PetscInt          ncols;
40b147fbf3SStefano Zampini     const PetscInt    *row;
41b147fbf3SStefano Zampini     const PetscScalar *vals;
42b147fbf3SStefano Zampini 
43b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
44b147fbf3SStefano Zampini       ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
45b147fbf3SStefano Zampini       ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
46b147fbf3SStefano Zampini       if (symm && symm[i]) {
47b147fbf3SStefano Zampini         ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
48b147fbf3SStefano Zampini       }
49b147fbf3SStefano Zampini       ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
50b147fbf3SStefano Zampini     }
51b147fbf3SStefano Zampini   }
52b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
53b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
54b147fbf3SStefano Zampini   ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr);
55b147fbf3SStefano Zampini   ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
56b147fbf3SStefano Zampini   PetscFunctionReturn(0);
57b147fbf3SStefano Zampini }
58b147fbf3SStefano Zampini 
59b147fbf3SStefano Zampini static PetscErrorCode MatConvert_MPISBAIJ_XAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
60b147fbf3SStefano Zampini {
61b147fbf3SStefano Zampini   Mat            B;
62b147fbf3SStefano Zampini   PetscErrorCode ierr;
63b147fbf3SStefano Zampini   PetscInt       r;
64b147fbf3SStefano Zampini 
65b147fbf3SStefano Zampini   PetscFunctionBegin;
66b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
67b147fbf3SStefano Zampini     PetscBool symm = PETSC_TRUE;
68b147fbf3SStefano Zampini     PetscInt  bs;
69b147fbf3SStefano Zampini 
70b147fbf3SStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
71b147fbf3SStefano Zampini     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
72b147fbf3SStefano Zampini     ierr = MatSetType(B,newtype);CHKERRQ(ierr);
73b147fbf3SStefano Zampini     ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr);
74b147fbf3SStefano Zampini     ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr);
75b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
76b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
77b147fbf3SStefano Zampini     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
78b147fbf3SStefano Zampini     ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr);
79b147fbf3SStefano Zampini     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
80b147fbf3SStefano Zampini   } else B = *newmat;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
83b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
84b147fbf3SStefano Zampini     PetscInt          ncols;
85b147fbf3SStefano Zampini     const PetscInt    *row;
86b147fbf3SStefano Zampini     const PetscScalar *vals;
87b147fbf3SStefano Zampini 
88b147fbf3SStefano Zampini     ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
89b147fbf3SStefano Zampini     ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
90b147fbf3SStefano Zampini     ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
91b147fbf3SStefano Zampini     ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
92b147fbf3SStefano Zampini   }
93b147fbf3SStefano Zampini   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
94b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
95b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
96b147fbf3SStefano Zampini 
97b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
98b147fbf3SStefano Zampini     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
99b147fbf3SStefano Zampini   } else {
100b147fbf3SStefano Zampini     *newmat = B;
101b147fbf3SStefano Zampini   }
102b147fbf3SStefano Zampini   PetscFunctionReturn(0);
103b147fbf3SStefano Zampini }
104b147fbf3SStefano Zampini 
1057087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
106a30f8f8cSSatish Balay {
107f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
108dfbe8321SBarry Smith   PetscErrorCode ierr;
109a30f8f8cSSatish Balay 
110a30f8f8cSSatish Balay   PetscFunctionBegin;
111a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
112a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
113a30f8f8cSSatish Balay   PetscFunctionReturn(0);
114a30f8f8cSSatish Balay }
115a30f8f8cSSatish Balay 
1167087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
117a30f8f8cSSatish Balay {
118f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
119dfbe8321SBarry Smith   PetscErrorCode ierr;
120a30f8f8cSSatish Balay 
121a30f8f8cSSatish Balay   PetscFunctionBegin;
122a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
123a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
124a30f8f8cSSatish Balay   PetscFunctionReturn(0);
125a30f8f8cSSatish Balay }
126a30f8f8cSSatish Balay 
127d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
128a30f8f8cSSatish Balay   { \
129a30f8f8cSSatish Balay     brow = row/bs;  \
130a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
131a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
132a30f8f8cSSatish Balay     bcol = col/bs; \
133a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
134a30f8f8cSSatish Balay     low  = 0; high = nrow; \
135a30f8f8cSSatish Balay     while (high-low > 3) { \
136a30f8f8cSSatish Balay       t = (low+high)/2; \
137a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
138a30f8f8cSSatish Balay       else              low  = t; \
139a30f8f8cSSatish Balay     } \
140a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
141a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
142a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
143a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
144a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
145a30f8f8cSSatish Balay         else                    *bap  = value;  \
146a30f8f8cSSatish Balay         goto a_noinsert; \
147a30f8f8cSSatish Balay       } \
148a30f8f8cSSatish Balay     } \
149a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
150d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
151fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
152a30f8f8cSSatish Balay     N = nrow++ - 1;  \
153a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
154580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
155580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
156580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
157a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
158a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
159e56f5c9eSBarry Smith     A->nonzerostate++;\
160a30f8f8cSSatish Balay a_noinsert:; \
161a30f8f8cSSatish Balay     ailen[brow] = nrow; \
162a30f8f8cSSatish Balay   }
163e5e170daSBarry Smith 
164d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
165a30f8f8cSSatish Balay   { \
166a30f8f8cSSatish Balay     brow = row/bs;  \
167a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
168a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
169a30f8f8cSSatish Balay     bcol = col/bs; \
170a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
171a30f8f8cSSatish Balay     low  = 0; high = nrow; \
172a30f8f8cSSatish Balay     while (high-low > 3) { \
173a30f8f8cSSatish Balay       t = (low+high)/2; \
174a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
175a30f8f8cSSatish Balay       else              low  = t; \
176a30f8f8cSSatish Balay     } \
177a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
178a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
179a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
180a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
181a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
182a30f8f8cSSatish Balay         else                    *bap  = value;  \
183a30f8f8cSSatish Balay         goto b_noinsert; \
184a30f8f8cSSatish Balay       } \
185a30f8f8cSSatish Balay     } \
186a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
187d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
188fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
189a30f8f8cSSatish Balay     N = nrow++ - 1;  \
190a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
191580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
192580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
193580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \
194a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
195a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
196e56f5c9eSBarry Smith     B->nonzerostate++;\
197a30f8f8cSSatish Balay b_noinsert:; \
198a30f8f8cSSatish Balay     bilen[brow] = nrow; \
199a30f8f8cSSatish Balay   }
200a30f8f8cSSatish Balay 
201a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
202476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
203a30f8f8cSSatish Balay */
204dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
205a30f8f8cSSatish Balay {
206a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
207a30f8f8cSSatish Balay   MatScalar      value;
208ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
209dfbe8321SBarry Smith   PetscErrorCode ierr;
2101302d50aSBarry Smith   PetscInt       i,j,row,col;
211d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
212d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
213d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
214a30f8f8cSSatish Balay 
215a30f8f8cSSatish Balay   /* Some Variables required in the macro */
216a30f8f8cSSatish Balay   Mat          A     = baij->A;
217a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2181302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
219a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
220a30f8f8cSSatish Balay 
221a30f8f8cSSatish Balay   Mat         B     = baij->B;
222a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2231302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
224a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
225a30f8f8cSSatish Balay 
2261302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2271302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
228a30f8f8cSSatish Balay   MatScalar *ap,*bap;
229a30f8f8cSSatish Balay 
230a30f8f8cSSatish Balay   /* for stash */
2310298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2320298fd71SBarry Smith   MatScalar *v_loc = NULL;
233a30f8f8cSSatish Balay 
234a30f8f8cSSatish Balay   PetscFunctionBegin;
235a30f8f8cSSatish Balay   if (!baij->donotstash) {
23659ffdab8SBarry Smith     if (n > baij->n_loc) {
23759ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
23859ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
239785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
240785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
24126fbe8dcSKarl Rupp 
24259ffdab8SBarry Smith       baij->n_loc = n;
24359ffdab8SBarry Smith     }
24459ffdab8SBarry Smith     in_loc = baij->in_loc;
24559ffdab8SBarry Smith     v_loc  = baij->v_loc;
246a30f8f8cSSatish Balay   }
247a30f8f8cSSatish Balay 
248a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
249a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2502515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
251e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
252a30f8f8cSSatish Balay #endif
253a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
254a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
255a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
25601b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
25701b2bd88SHong Zhang           if (a->ignore_ltriangular) {
25801b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
25926fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
26001b2bd88SHong Zhang         }
261a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
262a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
263a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
264a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
265db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
266db4deed7SKarl Rupp           else             value = v[i+j*m];
267d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
268a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
269a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2702515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
271cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
272a30f8f8cSSatish Balay #endif
273a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
274a30f8f8cSSatish Balay           if (mat->was_assembled) {
275a30f8f8cSSatish Balay             if (!baij->colmap) {
276ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
277a30f8f8cSSatish Balay             }
278a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
279a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28071730473SSatish Balay             col  = col - 1;
281a30f8f8cSSatish Balay #else
28271730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
283a30f8f8cSSatish Balay #endif
284a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
285ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
286a30f8f8cSSatish Balay               col  =  in[j];
287a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
288a30f8f8cSSatish Balay               B    = baij->B;
289a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
290a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
291a30f8f8cSSatish Balay               ba   = b->a;
29271730473SSatish Balay             } else col += in[j]%bs;
293a30f8f8cSSatish Balay           } else col = in[j];
294db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
295db4deed7SKarl Rupp           else             value = v[i+j*m];
296d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
297a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
298a30f8f8cSSatish Balay         }
299a30f8f8cSSatish Balay       }
300a30f8f8cSSatish Balay     } else {  /* off processor entry */
3014cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
302a30f8f8cSSatish Balay       if (!baij->donotstash) {
3035080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
304a30f8f8cSSatish Balay         n_loc          = 0;
305a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
306f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
307a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
308a30f8f8cSSatish Balay           if (roworiented) {
309a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
310a30f8f8cSSatish Balay           } else {
311a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
312a30f8f8cSSatish Balay           }
313a30f8f8cSSatish Balay           n_loc++;
314a30f8f8cSSatish Balay         }
315b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
316a30f8f8cSSatish Balay       }
317a30f8f8cSSatish Balay     }
318a30f8f8cSSatish Balay   }
319a30f8f8cSSatish Balay   PetscFunctionReturn(0);
320a30f8f8cSSatish Balay }
321a30f8f8cSSatish Balay 
32236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
32336bd2089SBarry Smith {
32436bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
32536bd2089SBarry Smith   PetscErrorCode    ierr;
32636bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
32736bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
32836bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
32936bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
33036bd2089SBarry Smith   const PetscScalar *value     = v;
33136bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
33236bd2089SBarry Smith 
33336bd2089SBarry Smith   PetscFunctionBegin;
33436bd2089SBarry Smith   if (col < row) {
33536bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
33636bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33736bd2089SBarry Smith   }
33836bd2089SBarry Smith   rp   = aj + ai[row];
33936bd2089SBarry Smith   ap   = aa + bs2*ai[row];
34036bd2089SBarry Smith   rmax = imax[row];
34136bd2089SBarry Smith   nrow = ailen[row];
34236bd2089SBarry Smith   value = v;
34336bd2089SBarry Smith   low   = 0;
34436bd2089SBarry Smith   high  = nrow;
34536bd2089SBarry Smith 
34636bd2089SBarry Smith   while (high-low > 7) {
34736bd2089SBarry Smith     t = (low+high)/2;
34836bd2089SBarry Smith     if (rp[t] > col) high = t;
34936bd2089SBarry Smith     else             low  = t;
35036bd2089SBarry Smith   }
35136bd2089SBarry Smith   for (i=low; i<high; i++) {
35236bd2089SBarry Smith     if (rp[i] > col) break;
35336bd2089SBarry Smith     if (rp[i] == col) {
35436bd2089SBarry Smith       bap = ap +  bs2*i;
35536bd2089SBarry Smith       if (roworiented) {
35636bd2089SBarry Smith         if (is == ADD_VALUES) {
35736bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
35836bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
35936bd2089SBarry Smith               bap[jj] += *value++;
36036bd2089SBarry Smith             }
36136bd2089SBarry Smith           }
36236bd2089SBarry Smith         } else {
36336bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
36436bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
36536bd2089SBarry Smith               bap[jj] = *value++;
36636bd2089SBarry Smith             }
36736bd2089SBarry Smith           }
36836bd2089SBarry Smith         }
36936bd2089SBarry Smith       } else {
37036bd2089SBarry Smith         if (is == ADD_VALUES) {
37136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37236bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
37336bd2089SBarry Smith               *bap++ += *value++;
37436bd2089SBarry Smith             }
37536bd2089SBarry Smith           }
37636bd2089SBarry Smith         } else {
37736bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37836bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
37936bd2089SBarry Smith               *bap++  = *value++;
38036bd2089SBarry Smith             }
38136bd2089SBarry Smith           }
38236bd2089SBarry Smith         }
38336bd2089SBarry Smith       }
38436bd2089SBarry Smith       goto noinsert2;
38536bd2089SBarry Smith     }
38636bd2089SBarry Smith   }
38736bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
38836bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
38936bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
39036bd2089SBarry Smith   N = nrow++ - 1; high++;
39136bd2089SBarry Smith   /* shift up all the later entries in this row */
392580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
393580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
39436bd2089SBarry Smith   rp[i] = col;
39536bd2089SBarry Smith   bap   = ap +  bs2*i;
39636bd2089SBarry Smith   if (roworiented) {
39736bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
39836bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
39936bd2089SBarry Smith         bap[jj] = *value++;
40036bd2089SBarry Smith       }
40136bd2089SBarry Smith     }
40236bd2089SBarry Smith   } else {
40336bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
40436bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
40536bd2089SBarry Smith         *bap++ = *value++;
40636bd2089SBarry Smith       }
40736bd2089SBarry Smith     }
40836bd2089SBarry Smith   }
40936bd2089SBarry Smith   noinsert2:;
41036bd2089SBarry Smith   ailen[row] = nrow;
41136bd2089SBarry Smith   PetscFunctionReturn(0);
41236bd2089SBarry Smith }
41336bd2089SBarry Smith 
41436bd2089SBarry Smith /*
41536bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
41636bd2089SBarry Smith */
41736bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
41836bd2089SBarry Smith {
41936bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
42036bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
42136bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
42236bd2089SBarry Smith   PetscErrorCode    ierr;
42336bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
42436bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
42536bd2089SBarry Smith   const PetscScalar *value     = v;
42636bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
42736bd2089SBarry Smith 
42836bd2089SBarry Smith   PetscFunctionBegin;
42936bd2089SBarry Smith   rp   = aj + ai[row];
43036bd2089SBarry Smith   ap   = aa + bs2*ai[row];
43136bd2089SBarry Smith   rmax = imax[row];
43236bd2089SBarry Smith   nrow = ailen[row];
43336bd2089SBarry Smith   low  = 0;
43436bd2089SBarry Smith   high = nrow;
43536bd2089SBarry Smith   value = v;
43636bd2089SBarry Smith   while (high-low > 7) {
43736bd2089SBarry Smith     t = (low+high)/2;
43836bd2089SBarry Smith     if (rp[t] > col) high = t;
43936bd2089SBarry Smith     else             low  = t;
44036bd2089SBarry Smith   }
44136bd2089SBarry Smith   for (i=low; i<high; i++) {
44236bd2089SBarry Smith     if (rp[i] > col) break;
44336bd2089SBarry Smith     if (rp[i] == col) {
44436bd2089SBarry Smith       bap = ap +  bs2*i;
44536bd2089SBarry Smith       if (roworiented) {
44636bd2089SBarry Smith         if (is == ADD_VALUES) {
44736bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
44836bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
44936bd2089SBarry Smith               bap[jj] += *value++;
45036bd2089SBarry Smith             }
45136bd2089SBarry Smith           }
45236bd2089SBarry Smith         } else {
45336bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
45436bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
45536bd2089SBarry Smith               bap[jj] = *value++;
45636bd2089SBarry Smith             }
45736bd2089SBarry Smith           }
45836bd2089SBarry Smith         }
45936bd2089SBarry Smith       } else {
46036bd2089SBarry Smith         if (is == ADD_VALUES) {
46136bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
46236bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
46336bd2089SBarry Smith               bap[jj] += value[jj];
46436bd2089SBarry Smith             }
46536bd2089SBarry Smith             bap += bs;
46636bd2089SBarry Smith           }
46736bd2089SBarry Smith         } else {
46836bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
46936bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
47036bd2089SBarry Smith               bap[jj]  = value[jj];
47136bd2089SBarry Smith             }
47236bd2089SBarry Smith             bap += bs;
47336bd2089SBarry Smith           }
47436bd2089SBarry Smith         }
47536bd2089SBarry Smith       }
47636bd2089SBarry Smith       goto noinsert2;
47736bd2089SBarry Smith     }
47836bd2089SBarry Smith   }
47936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
48036bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
48136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
48236bd2089SBarry Smith   N = nrow++ - 1; high++;
48336bd2089SBarry Smith   /* shift up all the later entries in this row */
484580bdb30SBarry Smith   ierr  = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
485580bdb30SBarry Smith   ierr  = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
48636bd2089SBarry Smith   rp[i] = col;
48736bd2089SBarry Smith   bap   = ap +  bs2*i;
48836bd2089SBarry Smith   if (roworiented) {
48936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
49036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
49136bd2089SBarry Smith         bap[jj] = *value++;
49236bd2089SBarry Smith       }
49336bd2089SBarry Smith     }
49436bd2089SBarry Smith   } else {
49536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
49636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
49736bd2089SBarry Smith         *bap++ = *value++;
49836bd2089SBarry Smith       }
49936bd2089SBarry Smith     }
50036bd2089SBarry Smith   }
50136bd2089SBarry Smith   noinsert2:;
50236bd2089SBarry Smith   ailen[row] = nrow;
50336bd2089SBarry Smith   PetscFunctionReturn(0);
50436bd2089SBarry Smith }
50536bd2089SBarry Smith 
50636bd2089SBarry Smith /*
50736bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
50836bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
50936bd2089SBarry Smith */
510dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
511a30f8f8cSSatish Balay {
5120880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
513f15d580aSBarry Smith   const MatScalar *value;
514f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
515ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
516dfbe8321SBarry Smith   PetscErrorCode  ierr;
517899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
518476417e5SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
519476417e5SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5200880e062SHong Zhang 
521a30f8f8cSSatish Balay   PetscFunctionBegin;
5220880e062SHong Zhang   if (!barray) {
523785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
5240880e062SHong Zhang     baij->barray = barray;
5250880e062SHong Zhang   }
5260880e062SHong Zhang 
5270880e062SHong Zhang   if (roworiented) {
5280880e062SHong Zhang     stepval = (n-1)*bs;
5290880e062SHong Zhang   } else {
5300880e062SHong Zhang     stepval = (m-1)*bs;
5310880e062SHong Zhang   }
5320880e062SHong Zhang   for (i=0; i<m; i++) {
5330880e062SHong Zhang     if (im[i] < 0) continue;
5342515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
535bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
5360880e062SHong Zhang #endif
5370880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5380880e062SHong Zhang       row = im[i] - rstart;
5390880e062SHong Zhang       for (j=0; j<n; j++) {
540f3f98c53SJed Brown         if (im[i] > in[j]) {
541f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
542e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
543f3f98c53SJed Brown         }
5440880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5450880e062SHong Zhang         if ((roworiented) && (n == 1)) {
546f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5470880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
548f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5490880e062SHong Zhang         } else { /* Here a copy is required */
5500880e062SHong Zhang           if (roworiented) {
5510880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5520880e062SHong Zhang           } else {
5530880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5540880e062SHong Zhang           }
5550880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5560880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5570880e062SHong Zhang               *barray++ = *value++;
5580880e062SHong Zhang             }
5590880e062SHong Zhang           }
5600880e062SHong Zhang           barray -=bs2;
5610880e062SHong Zhang         }
5620880e062SHong Zhang 
5630880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5640880e062SHong Zhang           col  = in[j] - cstart;
56536bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
56626fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
5672515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
568bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5690880e062SHong Zhang #endif
5700880e062SHong Zhang         else {
5710880e062SHong Zhang           if (mat->was_assembled) {
5720880e062SHong Zhang             if (!baij->colmap) {
573ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5740880e062SHong Zhang             }
5750880e062SHong Zhang 
5762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5770880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5781302d50aSBarry Smith             { PetscInt data;
5790880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
580e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5810880e062SHong Zhang             }
5820880e062SHong Zhang #else
583e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5840880e062SHong Zhang #endif
5850880e062SHong Zhang #endif
5860880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5870880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5880880e062SHong Zhang             col  = (col - 1)/bs;
5890880e062SHong Zhang #else
5900880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5910880e062SHong Zhang #endif
5920880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
593ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5940880e062SHong Zhang               col  = in[j];
5950880e062SHong Zhang             }
59626fbe8dcSKarl Rupp           } else col = in[j];
59736bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
5980880e062SHong Zhang         }
5990880e062SHong Zhang       }
6000880e062SHong Zhang     } else {
601bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6020880e062SHong Zhang       if (!baij->donotstash) {
6030880e062SHong Zhang         if (roworiented) {
6040880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6050880e062SHong Zhang         } else {
6060880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6070880e062SHong Zhang         }
6080880e062SHong Zhang       }
6090880e062SHong Zhang     }
6100880e062SHong Zhang   }
6110880e062SHong Zhang   PetscFunctionReturn(0);
612a30f8f8cSSatish Balay }
613a30f8f8cSSatish Balay 
6141302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
615a30f8f8cSSatish Balay {
616f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
6176849ba73SBarry Smith   PetscErrorCode ierr;
618d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
619d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
620a30f8f8cSSatish Balay 
621a30f8f8cSSatish Balay   PetscFunctionBegin;
622a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
623e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
624e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
625a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
626a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
627a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
628e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
629e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
630a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
631a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
632c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
633a30f8f8cSSatish Balay         } else {
634a30f8f8cSSatish Balay           if (!baij->colmap) {
635ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
636a30f8f8cSSatish Balay           }
637a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
638a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
639a30f8f8cSSatish Balay           data--;
640a30f8f8cSSatish Balay #else
641a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
642a30f8f8cSSatish Balay #endif
643a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
644a30f8f8cSSatish Balay           else {
645a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
646e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
647a30f8f8cSSatish Balay           }
648a30f8f8cSSatish Balay         }
649a30f8f8cSSatish Balay       }
650f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
651a30f8f8cSSatish Balay   }
652a30f8f8cSSatish Balay   PetscFunctionReturn(0);
653a30f8f8cSSatish Balay }
654a30f8f8cSSatish Balay 
655dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
656a30f8f8cSSatish Balay {
657a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
658dfbe8321SBarry Smith   PetscErrorCode ierr;
659a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
660a30f8f8cSSatish Balay 
661a30f8f8cSSatish Balay   PetscFunctionBegin;
662a30f8f8cSSatish Balay   if (baij->size == 1) {
663a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
664a30f8f8cSSatish Balay   } else {
665a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
666785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
667a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
668a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
669a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
670a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
671b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6728f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
673a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6740b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6750b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6760b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6770b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
678899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
679d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6800b8dc8d2SHong Zhang       MatScalar    *v;
6810b8dc8d2SHong Zhang 
682dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
683580bdb30SBarry Smith       ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr);
6840b8dc8d2SHong Zhang       /* Amat */
6850b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6860b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6870b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6880b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6890b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6900b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6910b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6920b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6930b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6940b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6950b8dc8d2SHong Zhang               /* non-diagonal block */
6960b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
6970b8dc8d2SHong Zhang             }
6980b8dc8d2SHong Zhang           }
6990b8dc8d2SHong Zhang         }
70051f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7010b8dc8d2SHong Zhang       }
7020b8dc8d2SHong Zhang       /* Bmat */
7030b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7040b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7050b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7060b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7070b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7080b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7090b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7100b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7110b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7120b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7130b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7140b8dc8d2SHong Zhang             }
7150b8dc8d2SHong Zhang           }
7160b8dc8d2SHong Zhang         }
71751f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7180b8dc8d2SHong Zhang       }
719b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7200b8dc8d2SHong Zhang       *norm = 0.0;
721d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7220b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7230b8dc8d2SHong Zhang       }
72474ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
725f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
726a30f8f8cSSatish Balay   }
727a30f8f8cSSatish Balay   PetscFunctionReturn(0);
728a30f8f8cSSatish Balay }
729a30f8f8cSSatish Balay 
730dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
731a30f8f8cSSatish Balay {
732a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
733dfbe8321SBarry Smith   PetscErrorCode ierr;
7341302d50aSBarry Smith   PetscInt       nstash,reallocs;
735a30f8f8cSSatish Balay 
736a30f8f8cSSatish Balay   PetscFunctionBegin;
73726fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
738a30f8f8cSSatish Balay 
739d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
7401e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
741a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7421e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
743a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7441e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
745a30f8f8cSSatish Balay   PetscFunctionReturn(0);
746a30f8f8cSSatish Balay }
747a30f8f8cSSatish Balay 
748dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
749a30f8f8cSSatish Balay {
750a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
751a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
7526849ba73SBarry Smith   PetscErrorCode ierr;
75313f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
754e44c0bd4SBarry Smith   PetscInt       *row,*col;
755ace3abfcSBarry Smith   PetscBool      other_disassembled;
75613f74950SBarry Smith   PetscMPIInt    n;
757ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
758a30f8f8cSSatish Balay   MatScalar      *val;
759a30f8f8cSSatish Balay 
76091c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
761a30f8f8cSSatish Balay   PetscFunctionBegin;
7624cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
763a30f8f8cSSatish Balay     while (1) {
764a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
765a30f8f8cSSatish Balay       if (!flg) break;
766a30f8f8cSSatish Balay 
767a30f8f8cSSatish Balay       for (i=0; i<n;) {
768a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
76926fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
77026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
77126fbe8dcSKarl Rupp         }
772a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
773a30f8f8cSSatish Balay         else       ncols = n-i;
774a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7754b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
776a30f8f8cSSatish Balay         i    = j;
777a30f8f8cSSatish Balay       }
778a30f8f8cSSatish Balay     }
779a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
780a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
781a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
782a30f8f8cSSatish Balay        restore the original flags */
783a30f8f8cSSatish Balay     r1 = baij->roworiented;
784a30f8f8cSSatish Balay     r2 = a->roworiented;
78591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
78626fbe8dcSKarl Rupp 
787a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
788a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
78926fbe8dcSKarl Rupp 
79091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
791a30f8f8cSSatish Balay     while (1) {
792a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
793a30f8f8cSSatish Balay       if (!flg) break;
794a30f8f8cSSatish Balay 
795a30f8f8cSSatish Balay       for (i=0; i<n;) {
796a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
79726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
79826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
79926fbe8dcSKarl Rupp         }
800a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
801a30f8f8cSSatish Balay         else       ncols = n-i;
8024b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
803a30f8f8cSSatish Balay         i    = j;
804a30f8f8cSSatish Balay       }
805a30f8f8cSSatish Balay     }
806a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
80726fbe8dcSKarl Rupp 
808a30f8f8cSSatish Balay     baij->roworiented = r1;
809a30f8f8cSSatish Balay     a->roworiented    = r2;
81026fbe8dcSKarl Rupp 
81191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
812a30f8f8cSSatish Balay   }
813a30f8f8cSSatish Balay 
814a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
815a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
816a30f8f8cSSatish Balay 
817a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
818a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
819a30f8f8cSSatish Balay   /*
820a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
821a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
822a30f8f8cSSatish Balay   */
823a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
824b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
825a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
826ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
827a30f8f8cSSatish Balay     }
828a30f8f8cSSatish Balay   }
829a30f8f8cSSatish Balay 
830a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
83140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
832a30f8f8cSSatish Balay   }
833a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
834a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
835a30f8f8cSSatish Balay 
83674ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
83726fbe8dcSKarl Rupp 
838a30f8f8cSSatish Balay   baij->rowvalues = 0;
8394f9cfa9eSBarry Smith 
8404f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8414f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
842e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
843b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
844e56f5c9eSBarry Smith   }
845a30f8f8cSSatish Balay   PetscFunctionReturn(0);
846a30f8f8cSSatish Balay }
847a30f8f8cSSatish Balay 
848dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8499804daf3SBarry Smith #include <petscdraw.h>
8506849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
851a30f8f8cSSatish Balay {
852a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
853dfbe8321SBarry Smith   PetscErrorCode    ierr;
854d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8557da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
856ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
857b0a32e0cSBarry Smith   PetscViewer       sviewer;
858f3ef73ceSBarry Smith   PetscViewerFormat format;
859a30f8f8cSSatish Balay 
860a30f8f8cSSatish Balay   PetscFunctionBegin;
861251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
862251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
86332077d6dSBarry Smith   if (iascii) {
864b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
865456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
866a30f8f8cSSatish Balay       MatInfo info;
867ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
868a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8691575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
870b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
871a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
872e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
873a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
874e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
875b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8761575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
87707d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
878a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
879a30f8f8cSSatish Balay       PetscFunctionReturn(0);
880fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
88177431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
882a30f8f8cSSatish Balay       PetscFunctionReturn(0);
883c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
884c1490034SHong Zhang       PetscFunctionReturn(0);
885a30f8f8cSSatish Balay     }
886a30f8f8cSSatish Balay   }
887a30f8f8cSSatish Balay 
888a30f8f8cSSatish Balay   if (isdraw) {
889b0a32e0cSBarry Smith     PetscDraw draw;
890ace3abfcSBarry Smith     PetscBool isnull;
891b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
89245f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
89345f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
894a30f8f8cSSatish Balay   }
895a30f8f8cSSatish Balay 
8967da1fb6eSBarry Smith   {
897a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
898a30f8f8cSSatish Balay     Mat          A;
89965d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
90065d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
901d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
902a30f8f8cSSatish Balay     MatScalar    *a;
9033e219373SBarry Smith     const char   *matname;
904a30f8f8cSSatish Balay 
905f204ca49SKris Buschelman     /* Should this be the same type as mat? */
906ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
907a30f8f8cSSatish Balay     if (!rank) {
908f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
909a30f8f8cSSatish Balay     } else {
910f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
911a30f8f8cSSatish Balay     }
912f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
9130298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
9142b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
9153bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
916a30f8f8cSSatish Balay 
917a30f8f8cSSatish Balay     /* copy over the A part */
91865d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
919a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
920785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
921a30f8f8cSSatish Balay 
922a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
923e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
92426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
925a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
926e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
927a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
928dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
92926fbe8dcSKarl Rupp           col++;
93026fbe8dcSKarl Rupp           a += bs;
931a30f8f8cSSatish Balay         }
932a30f8f8cSSatish Balay       }
933a30f8f8cSSatish Balay     }
934a30f8f8cSSatish Balay     /* copy over the B part */
93565d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
93665d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
937a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
938e9f7bc9eSHong Zhang 
939e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
94026fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
941a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
942a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
943a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
944799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
94526fbe8dcSKarl Rupp           col++;
94626fbe8dcSKarl Rupp           a += bs;
947a30f8f8cSSatish Balay         }
948a30f8f8cSSatish Balay       }
949a30f8f8cSSatish Balay     }
950a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
951a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
952a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
953a30f8f8cSSatish Balay     /*
954a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
955b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
956a30f8f8cSSatish Balay     */
9573f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
958ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9593e219373SBarry Smith     if (!rank) {
960ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
961383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
962a30f8f8cSSatish Balay     }
9633f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9641575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9656bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
966a30f8f8cSSatish Balay   }
967a30f8f8cSSatish Balay   PetscFunctionReturn(0);
968a30f8f8cSSatish Balay }
969a30f8f8cSSatish Balay 
970d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer)
971d1654148SHong Zhang {
972d1654148SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)mat->data;
973d1654148SHong Zhang   Mat_SeqSBAIJ   *A = (Mat_SeqSBAIJ*)a->A->data;
974d1654148SHong Zhang   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
975d1654148SHong Zhang   PetscErrorCode ierr;
976d1654148SHong Zhang   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
977d1654148SHong Zhang   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
978d1654148SHong Zhang   int            fd;
979d1654148SHong Zhang   PetscScalar    *column_values;
980d1654148SHong Zhang   FILE           *file;
981d1654148SHong Zhang   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
982d1654148SHong Zhang   PetscInt       message_count,flowcontrolcount;
983d1654148SHong Zhang 
984d1654148SHong Zhang   PetscFunctionBegin;
985d1654148SHong Zhang   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
986d1654148SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
987d1654148SHong Zhang   nz   = bs2*(A->nz + B->nz);
988d1654148SHong Zhang   rlen = mat->rmap->n;
989d1654148SHong Zhang   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
990d1654148SHong Zhang   if (!rank) {
991d1654148SHong Zhang     header[0] = MAT_FILE_CLASSID;
992d1654148SHong Zhang     header[1] = mat->rmap->N;
993d1654148SHong Zhang     header[2] = mat->cmap->N;
994d1654148SHong Zhang 
995d1654148SHong Zhang     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
996d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
997d1654148SHong Zhang     /* get largest number of rows any processor has */
998d1654148SHong Zhang     range = mat->rmap->range;
999d1654148SHong Zhang     for (i=1; i<size; i++) {
1000d1654148SHong Zhang       rlen = PetscMax(rlen,range[i+1] - range[i]);
1001d1654148SHong Zhang     }
1002d1654148SHong Zhang   } else {
1003d1654148SHong Zhang     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1004d1654148SHong Zhang   }
1005d1654148SHong Zhang 
1006d1654148SHong Zhang   ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr);
1007d1654148SHong Zhang   /* compute lengths of each row  */
1008d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1009d1654148SHong Zhang     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1010d1654148SHong Zhang   }
1011d1654148SHong Zhang   /* store the row lengths to the file */
1012d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1013d1654148SHong Zhang   if (!rank) {
1014d1654148SHong Zhang     MPI_Status status;
1015d1654148SHong Zhang     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
1016d1654148SHong Zhang     rlen = (range[1] - range[0])/bs;
1017d1654148SHong Zhang     for (i=0; i<rlen; i++) {
1018d1654148SHong Zhang       for (j=0; j<bs; j++) {
1019d1654148SHong Zhang         row_lens[i*bs+j] = bs*crow_lens[i];
1020d1654148SHong Zhang       }
1021d1654148SHong Zhang     }
1022d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1023d1654148SHong Zhang     for (i=1; i<size; i++) {
1024d1654148SHong Zhang       rlen = (range[i+1] - range[i])/bs;
1025d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1026d1654148SHong Zhang       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1027d1654148SHong Zhang       for (k=0; k<rlen; k++) {
1028d1654148SHong Zhang         for (j=0; j<bs; j++) {
1029d1654148SHong Zhang           row_lens[k*bs+j] = bs*crow_lens[k];
1030d1654148SHong Zhang         }
1031d1654148SHong Zhang       }
1032d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1033d1654148SHong Zhang     }
1034d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1035d1654148SHong Zhang     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1036d1654148SHong Zhang   } else {
1037d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1038d1654148SHong Zhang     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1039d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1040d1654148SHong Zhang   }
1041d1654148SHong Zhang   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1042d1654148SHong Zhang 
1043d1654148SHong Zhang   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1044d1654148SHong Zhang      information needed to make it for each row from a block row. This does require more communication but still not more than
1045d1654148SHong Zhang      the communication needed for the nonzero values  */
1046d1654148SHong Zhang   nzmax = nz; /*  space a largest processor needs */
1047d1654148SHong Zhang   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1048d1654148SHong Zhang   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
1049d1654148SHong Zhang   cnt   = 0;
1050d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1051d1654148SHong Zhang     pcnt = cnt;
1052d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1053d1654148SHong Zhang       if ((col = garray[B->j[j]]) > cstart) break;
1054d1654148SHong Zhang       for (l=0; l<bs; l++) {
1055d1654148SHong Zhang         column_indices[cnt++] = bs*col+l;
1056d1654148SHong Zhang       }
1057d1654148SHong Zhang     }
1058d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1059d1654148SHong Zhang       for (l=0; l<bs; l++) {
1060d1654148SHong Zhang         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1061d1654148SHong Zhang       }
1062d1654148SHong Zhang     }
1063d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1064d1654148SHong Zhang       for (l=0; l<bs; l++) {
1065d1654148SHong Zhang         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1066d1654148SHong Zhang       }
1067d1654148SHong Zhang     }
1068d1654148SHong Zhang     len = cnt - pcnt;
1069d1654148SHong Zhang     for (k=1; k<bs; k++) {
1070580bdb30SBarry Smith       ierr = PetscArraycpy(&column_indices[cnt],&column_indices[pcnt],len);CHKERRQ(ierr);
1071d1654148SHong Zhang       cnt += len;
1072d1654148SHong Zhang     }
1073d1654148SHong Zhang   }
1074d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1075d1654148SHong Zhang 
1076d1654148SHong Zhang   /* store the columns to the file */
1077d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1078d1654148SHong Zhang   if (!rank) {
1079d1654148SHong Zhang     MPI_Status status;
1080d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1081d1654148SHong Zhang     for (i=1; i<size; i++) {
1082d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1083d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1084d1654148SHong Zhang       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1085d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1086d1654148SHong Zhang     }
1087d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1088d1654148SHong Zhang   } else {
1089d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1090d1654148SHong Zhang     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1091d1654148SHong Zhang     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1092d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1093d1654148SHong Zhang   }
1094d1654148SHong Zhang   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1095d1654148SHong Zhang 
1096d1654148SHong Zhang   /* load up the numerical values */
1097d1654148SHong Zhang   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1098d1654148SHong Zhang   cnt  = 0;
1099d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1100d1654148SHong Zhang     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1101d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1102d1654148SHong Zhang       if (garray[B->j[j]] > cstart) break;
1103d1654148SHong Zhang       for (l=0; l<bs; l++) {
1104d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1105d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1106d1654148SHong Zhang         }
1107d1654148SHong Zhang       }
1108d1654148SHong Zhang       cnt += bs;
1109d1654148SHong Zhang     }
1110d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1111d1654148SHong Zhang       for (l=0; l<bs; l++) {
1112d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1113d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1114d1654148SHong Zhang         }
1115d1654148SHong Zhang       }
1116d1654148SHong Zhang       cnt += bs;
1117d1654148SHong Zhang     }
1118d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1119d1654148SHong Zhang       for (l=0; l<bs; l++) {
1120d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1121d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1122d1654148SHong Zhang         }
1123d1654148SHong Zhang       }
1124d1654148SHong Zhang       cnt += bs;
1125d1654148SHong Zhang     }
1126d1654148SHong Zhang     cnt += (bs-1)*rlen;
1127d1654148SHong Zhang   }
1128d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1129d1654148SHong Zhang 
1130d1654148SHong Zhang   /* store the column values to the file */
1131d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1132d1654148SHong Zhang   if (!rank) {
1133d1654148SHong Zhang     MPI_Status status;
1134d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1135d1654148SHong Zhang     for (i=1; i<size; i++) {
1136d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1137d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1138d1654148SHong Zhang       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1139d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1140d1654148SHong Zhang     }
1141d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1142d1654148SHong Zhang   } else {
1143d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1144d1654148SHong Zhang     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1145d1654148SHong Zhang     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1146d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1147d1654148SHong Zhang   }
1148d1654148SHong Zhang   ierr = PetscFree(column_values);CHKERRQ(ierr);
1149d1654148SHong Zhang 
1150d1654148SHong Zhang   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1151d1654148SHong Zhang   if (file) {
1152d1654148SHong Zhang     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1153d1654148SHong Zhang   }
1154d1654148SHong Zhang   PetscFunctionReturn(0);
1155d1654148SHong Zhang }
1156d1654148SHong Zhang 
1157dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
1158a30f8f8cSSatish Balay {
1159dfbe8321SBarry Smith   PetscErrorCode ierr;
1160ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
1161a30f8f8cSSatish Balay 
1162a30f8f8cSSatish Balay   PetscFunctionBegin;
1163251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1164251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1165251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1166251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1167d1654148SHong Zhang   if (iascii || isdraw || issocket) {
1168a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1169d1654148SHong Zhang   } else if (isbinary) {
1170d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1171a30f8f8cSSatish Balay   }
1172a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1173a30f8f8cSSatish Balay }
1174a30f8f8cSSatish Balay 
1175dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1176a30f8f8cSSatish Balay {
1177a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1178dfbe8321SBarry Smith   PetscErrorCode ierr;
1179a30f8f8cSSatish Balay 
1180a30f8f8cSSatish Balay   PetscFunctionBegin;
1181a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1182d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
1183a30f8f8cSSatish Balay #endif
1184a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1185a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
11866bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
11876bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1188a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
11896bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1190a30f8f8cSSatish Balay #else
119105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1192a30f8f8cSSatish Balay #endif
119305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
11946bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
11956bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
11966bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
11976bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
11986bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
11996bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
12006bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
12016bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
12025755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
120305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
120405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
12056bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
12066bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
12076bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1208ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
120905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1210a30f8f8cSSatish Balay #endif
121159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
121259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1213899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1214bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1215901853e0SKris Buschelman 
1216dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1217bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1218bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1219bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1220d2c30c80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
12216214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
12226214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
12236214f412SHong Zhang #endif
1224b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr);
1225b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr);
1226a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1227a30f8f8cSSatish Balay }
1228a30f8f8cSSatish Balay 
1229547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1230547795f9SHong Zhang {
1231547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1232547795f9SHong Zhang   PetscErrorCode    ierr;
1233547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
12346de40e93SBarry Smith   PetscScalar       *from;
12356de40e93SBarry Smith   const PetscScalar *x;
1236547795f9SHong Zhang 
1237547795f9SHong Zhang   PetscFunctionBegin;
1238547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1239e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1240547795f9SHong Zhang 
1241547795f9SHong Zhang   /* diagonal part */
1242547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1243547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1244547795f9SHong Zhang 
1245547795f9SHong Zhang   /* subdiagonal part */
1246547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1247547795f9SHong Zhang 
1248547795f9SHong Zhang   /* copy x into the vec slvec0 */
1249547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
12506de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1251547795f9SHong Zhang 
1252580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1253547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
12546de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1255547795f9SHong Zhang 
1256547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1257547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1258547795f9SHong Zhang   /* supperdiagonal part */
1259547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1260547795f9SHong Zhang   PetscFunctionReturn(0);
1261547795f9SHong Zhang }
1262547795f9SHong Zhang 
1263dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1264a9d4b620SHong Zhang {
1265a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1266dfbe8321SBarry Smith   PetscErrorCode    ierr;
1267d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1268d9ca1df4SBarry Smith   PetscScalar       *from;
1269d9ca1df4SBarry Smith   const PetscScalar *x;
1270a9d4b620SHong Zhang 
1271a9d4b620SHong Zhang   PetscFunctionBegin;
1272a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1273e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1274a9d4b620SHong Zhang 
1275a9d4b620SHong Zhang   /* diagonal part */
1276a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1277fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1278a9d4b620SHong Zhang 
1279a9d4b620SHong Zhang   /* subdiagonal part */
1280a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1281fc165ae2SBarry Smith 
1282a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
12831ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1284d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1285a9d4b620SHong Zhang 
1286580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1287fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1288d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1289fc165ae2SBarry Smith 
1290fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1291ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1292a9d4b620SHong Zhang   /* supperdiagonal part */
1293a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1294a9d4b620SHong Zhang   PetscFunctionReturn(0);
1295a9d4b620SHong Zhang }
1296a9d4b620SHong Zhang 
1297dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1298a30f8f8cSSatish Balay {
1299a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1300dfbe8321SBarry Smith   PetscErrorCode ierr;
13011302d50aSBarry Smith   PetscInt       nt;
1302a30f8f8cSSatish Balay 
1303a30f8f8cSSatish Balay   PetscFunctionBegin;
1304a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1305e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1306e7e72b3dSBarry Smith 
1307a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1308e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
130965d70643SHong Zhang 
1310ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1311b941877fSHong Zhang   /* do diagonal part */
1312b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1313b941877fSHong Zhang   /* do supperdiagonal part */
1314ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1315b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1316b941877fSHong Zhang   /* do subdiagonal part */
1317b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1318ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1319ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1320a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1321a30f8f8cSSatish Balay }
1322a30f8f8cSSatish Balay 
1323dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1324a30f8f8cSSatish Balay {
1325de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1326dfbe8321SBarry Smith   PetscErrorCode    ierr;
1327d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1328d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1329d9ca1df4SBarry Smith   const PetscScalar *x;
1330a9d4b620SHong Zhang 
1331a9d4b620SHong Zhang   PetscFunctionBegin;
1332a9d4b620SHong Zhang   /*
1333ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
13340ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1335a9d4b620SHong Zhang   */
1336a9d4b620SHong Zhang   /* diagonal part */
1337a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
13382dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1339a9d4b620SHong Zhang 
1340a9d4b620SHong Zhang   /* subdiagonal part */
1341a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1342a9d4b620SHong Zhang 
1343a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
13441ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1345d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1346580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
13471ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1348a9d4b620SHong Zhang 
1349ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1350d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1351ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1352a9d4b620SHong Zhang 
1353a9d4b620SHong Zhang   /* supperdiagonal part */
1354a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1355a9d4b620SHong Zhang   PetscFunctionReturn(0);
1356a9d4b620SHong Zhang }
1357a9d4b620SHong Zhang 
1358dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1359a9d4b620SHong Zhang {
1360a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1361dfbe8321SBarry Smith   PetscErrorCode ierr;
1362a30f8f8cSSatish Balay 
1363a30f8f8cSSatish Balay   PetscFunctionBegin;
1364ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1365b941877fSHong Zhang   /* do diagonal part */
1366b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1367b941877fSHong Zhang   /* do supperdiagonal part */
1368ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1369de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1370de8b6608SHong Zhang 
1371b941877fSHong Zhang   /* do subdiagonal part */
1372a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1373ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1374ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1375a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1376a30f8f8cSSatish Balay }
1377a30f8f8cSSatish Balay 
1378a30f8f8cSSatish Balay /*
1379a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1380a30f8f8cSSatish Balay    diagonal block
1381a30f8f8cSSatish Balay */
1382dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1383a30f8f8cSSatish Balay {
1384a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1385dfbe8321SBarry Smith   PetscErrorCode ierr;
1386a30f8f8cSSatish Balay 
1387a30f8f8cSSatish Balay   PetscFunctionBegin;
1388e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1389a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1390a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1391a30f8f8cSSatish Balay }
1392a30f8f8cSSatish Balay 
1393f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1394a30f8f8cSSatish Balay {
1395a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1396dfbe8321SBarry Smith   PetscErrorCode ierr;
1397a30f8f8cSSatish Balay 
1398a30f8f8cSSatish Balay   PetscFunctionBegin;
1399f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1400f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1401a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1402a30f8f8cSSatish Balay }
1403a30f8f8cSSatish Balay 
14041302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1405a30f8f8cSSatish Balay {
1406d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1407d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1408d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1409d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1410d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1411899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1412d0d4cfc2SHong Zhang 
1413a30f8f8cSSatish Balay   PetscFunctionBegin;
1414e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1415d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1416d0d4cfc2SHong Zhang 
1417d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1418d0d4cfc2SHong Zhang     /*
1419d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1420d0d4cfc2SHong Zhang     */
1421d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1422d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1423d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1424d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1425d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
142626fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1427d0d4cfc2SHong Zhang     }
1428dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1429d0d4cfc2SHong Zhang   }
1430d0d4cfc2SHong Zhang 
1431e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1432d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1433d0d4cfc2SHong Zhang 
1434d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1435d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1436d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1437d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1438d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1439d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1440d0d4cfc2SHong Zhang 
1441d0d4cfc2SHong Zhang   cmap = mat->garray;
1442d0d4cfc2SHong Zhang   if (v  || idx) {
1443d0d4cfc2SHong Zhang     if (nztot) {
1444d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1445d0d4cfc2SHong Zhang       PetscInt imark = -1;
1446d0d4cfc2SHong Zhang       if (v) {
1447d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1448d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1449d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1450d0d4cfc2SHong Zhang           else break;
1451d0d4cfc2SHong Zhang         }
1452d0d4cfc2SHong Zhang         imark = i;
1453d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1454d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1455d0d4cfc2SHong Zhang       }
1456d0d4cfc2SHong Zhang       if (idx) {
1457d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1458d0d4cfc2SHong Zhang         if (imark > -1) {
1459d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1460d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1461d0d4cfc2SHong Zhang           }
1462d0d4cfc2SHong Zhang         } else {
1463d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
146426fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1465d0d4cfc2SHong Zhang             else break;
1466d0d4cfc2SHong Zhang           }
1467d0d4cfc2SHong Zhang           imark = i;
1468d0d4cfc2SHong Zhang         }
1469d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1470d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1471d0d4cfc2SHong Zhang       }
1472d0d4cfc2SHong Zhang     } else {
1473d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1474d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1475d0d4cfc2SHong Zhang     }
1476d0d4cfc2SHong Zhang   }
1477d0d4cfc2SHong Zhang   *nz  = nztot;
1478d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1479d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1480a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1481a30f8f8cSSatish Balay }
1482a30f8f8cSSatish Balay 
14831302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1484a30f8f8cSSatish Balay {
1485a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1486a30f8f8cSSatish Balay 
1487a30f8f8cSSatish Balay   PetscFunctionBegin;
1488e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1489a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1490a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1491a30f8f8cSSatish Balay }
1492a30f8f8cSSatish Balay 
1493d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1494d0d4cfc2SHong Zhang {
1495d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1496d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1497d0d4cfc2SHong Zhang 
1498d0d4cfc2SHong Zhang   PetscFunctionBegin;
1499d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1500d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1501d0d4cfc2SHong Zhang }
1502d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1503d0d4cfc2SHong Zhang {
1504d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1505d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1506d0d4cfc2SHong Zhang 
1507d0d4cfc2SHong Zhang   PetscFunctionBegin;
1508d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1509d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1510d0d4cfc2SHong Zhang }
1511d0d4cfc2SHong Zhang 
151299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
151399cafbc1SBarry Smith {
151499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
151599cafbc1SBarry Smith   PetscErrorCode ierr;
151699cafbc1SBarry Smith 
151799cafbc1SBarry Smith   PetscFunctionBegin;
151899cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
151999cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
152099cafbc1SBarry Smith   PetscFunctionReturn(0);
152199cafbc1SBarry Smith }
152299cafbc1SBarry Smith 
152399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
152499cafbc1SBarry Smith {
152599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
152699cafbc1SBarry Smith   PetscErrorCode ierr;
152799cafbc1SBarry Smith 
152899cafbc1SBarry Smith   PetscFunctionBegin;
152999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
153099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
153199cafbc1SBarry Smith   PetscFunctionReturn(0);
153299cafbc1SBarry Smith }
153399cafbc1SBarry Smith 
15347dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
153536032a97SHong Zhang    Input: isrow       - distributed(parallel),
153636032a97SHong Zhang           iscol_local - locally owned (seq)
153736032a97SHong Zhang */
153836032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
15398f46ffcaSHong Zhang {
15408f46ffcaSHong Zhang   PetscErrorCode ierr;
15418f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
15428f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
154336032a97SHong Zhang 
154436032a97SHong Zhang   PetscFunctionBegin;
15458f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
15468f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
15471098a8e8SHong Zhang   if (sz1 > sz2) {
15481098a8e8SHong Zhang     *flg = PETSC_FALSE;
15491098a8e8SHong Zhang     PetscFunctionReturn(0);
15501098a8e8SHong Zhang   }
15518f46ffcaSHong Zhang 
15528f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
15538f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15548f46ffcaSHong Zhang 
15558f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
15568f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
1557580bdb30SBarry Smith   ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr);
1558580bdb30SBarry Smith   ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr);
15598f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
15608f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
15618f46ffcaSHong Zhang 
15628f46ffcaSHong Zhang   nmatch=0;
15638f46ffcaSHong Zhang   k     = 0;
15648f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
15658f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
15668f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
15678f46ffcaSHong Zhang         k = j; nmatch++;
15688f46ffcaSHong Zhang         break;
15698f46ffcaSHong Zhang       }
15708f46ffcaSHong Zhang     }
15718f46ffcaSHong Zhang   }
15728f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
15738f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15748f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
15758f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
15761098a8e8SHong Zhang   if (nmatch < sz1) {
15771098a8e8SHong Zhang     *flg = PETSC_FALSE;
15781098a8e8SHong Zhang   } else {
15791098a8e8SHong Zhang     *flg = PETSC_TRUE;
15801098a8e8SHong Zhang   }
158136032a97SHong Zhang   PetscFunctionReturn(0);
15828f46ffcaSHong Zhang }
158336032a97SHong Zhang 
15847dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
158536032a97SHong Zhang {
158636032a97SHong Zhang   PetscErrorCode ierr;
158736032a97SHong Zhang   IS             iscol_local;
158836032a97SHong Zhang   PetscInt       csize;
158936032a97SHong Zhang   PetscBool      isequal;
159036032a97SHong Zhang 
159136032a97SHong Zhang   PetscFunctionBegin;
159236032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
159336032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
159436032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
159536032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
159636032a97SHong Zhang   } else {
159736032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
159836032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
159936032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
16008f46ffcaSHong Zhang   }
16018f46ffcaSHong Zhang 
16027dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
16037dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
16048f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
16058f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
16068f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
16078f46ffcaSHong Zhang   }
16088f46ffcaSHong Zhang   PetscFunctionReturn(0);
16098f46ffcaSHong Zhang }
16108f46ffcaSHong Zhang 
1611dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1612a30f8f8cSSatish Balay {
1613a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1614dfbe8321SBarry Smith   PetscErrorCode ierr;
1615a30f8f8cSSatish Balay 
1616a30f8f8cSSatish Balay   PetscFunctionBegin;
1617a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1618a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1619a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1620a30f8f8cSSatish Balay }
1621a30f8f8cSSatish Balay 
1622dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1623a30f8f8cSSatish Balay {
1624a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1625a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1626dfbe8321SBarry Smith   PetscErrorCode ierr;
1627a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1628a30f8f8cSSatish Balay 
1629a30f8f8cSSatish Balay   PetscFunctionBegin;
1630d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
163126fbe8dcSKarl Rupp 
1632a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
163326fbe8dcSKarl Rupp 
1634a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1635a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
163626fbe8dcSKarl Rupp 
1637a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
163826fbe8dcSKarl Rupp 
1639a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1640a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1641a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1642a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1643a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1644a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1645a30f8f8cSSatish Balay     info->memory       = isend[3];
1646a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1647a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1648b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
164926fbe8dcSKarl Rupp 
1650a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1651a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1652a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1653a30f8f8cSSatish Balay     info->memory       = irecv[3];
1654a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1655a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1656b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
165726fbe8dcSKarl Rupp 
1658a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1659a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1660a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1661a30f8f8cSSatish Balay     info->memory       = irecv[3];
1662a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1663f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1664a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1665a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1666a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1667a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1668a30f8f8cSSatish Balay }
1669a30f8f8cSSatish Balay 
1670ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1671a30f8f8cSSatish Balay {
1672a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1673d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1674dfbe8321SBarry Smith   PetscErrorCode ierr;
1675a30f8f8cSSatish Balay 
1676a30f8f8cSSatish Balay   PetscFunctionBegin;
1677e98b92d7SKris Buschelman   switch (op) {
1678512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1679e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
168028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1681a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1682c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1683e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
168443674050SBarry Smith     MatCheckPreallocated(A,1);
16854e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16864e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1687e98b92d7SKris Buschelman     break;
1688e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
168943674050SBarry Smith     MatCheckPreallocated(A,1);
16904e0d8c25SBarry Smith     a->roworiented = flg;
169126fbe8dcSKarl Rupp 
16924e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16934e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1694e98b92d7SKris Buschelman     break;
16954e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1696071fcb05SBarry Smith   case MAT_SORTED_FULL:
1697290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1698e98b92d7SKris Buschelman     break;
1699e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
17004e0d8c25SBarry Smith     a->donotstash = flg;
1701e98b92d7SKris Buschelman     break;
1702e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
17034e0d8c25SBarry Smith     a->ht_flag = flg;
1704e98b92d7SKris Buschelman     break;
17059a4540c5SBarry Smith   case MAT_HERMITIAN:
170643674050SBarry Smith     MatCheckPreallocated(A,1);
1707e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1708eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
17090f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1710547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
17110f2140c7SStefano Zampini #endif
1712eeffb40dSHong Zhang     break;
1713ffa07934SHong Zhang   case MAT_SPD:
1714ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1715ffa07934SHong Zhang     A->spd     = flg;
1716ffa07934SHong Zhang     if (flg) {
1717ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1718ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1719ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1720ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1721ffa07934SHong Zhang     }
1722ffa07934SHong Zhang     break;
172377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
172443674050SBarry Smith     MatCheckPreallocated(A,1);
1725eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1726eeffb40dSHong Zhang     break;
172777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
172843674050SBarry Smith     MatCheckPreallocated(A,1);
1729eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1730eeffb40dSHong Zhang     break;
17319a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1732e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1733290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
173477e54ba9SKris Buschelman     break;
1735d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
17364e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1737d0d4cfc2SHong Zhang     break;
1738d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
17394e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1740d0d4cfc2SHong Zhang     break;
1741d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
17424e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1743d0d4cfc2SHong Zhang     break;
1744e98b92d7SKris Buschelman   default:
1745e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1746a30f8f8cSSatish Balay   }
1747a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1748a30f8f8cSSatish Balay }
1749a30f8f8cSSatish Balay 
1750fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1751a30f8f8cSSatish Balay {
1752dfbe8321SBarry Smith   PetscErrorCode ierr;
17536e111a19SKarl Rupp 
1754a30f8f8cSSatish Balay   PetscFunctionBegin;
1755cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1756999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1757cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1758cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1759fc4dec0aSBarry Smith   }
17608115998fSBarry Smith   PetscFunctionReturn(0);
1761a30f8f8cSSatish Balay }
1762a30f8f8cSSatish Balay 
1763dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1764a30f8f8cSSatish Balay {
1765a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1766a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1767dfbe8321SBarry Smith   PetscErrorCode ierr;
17685e90f9d9SHong Zhang   PetscInt       nv,m,n;
1769ace3abfcSBarry Smith   PetscBool      flg;
1770a30f8f8cSSatish Balay 
1771a30f8f8cSSatish Balay   PetscFunctionBegin;
1772a30f8f8cSSatish Balay   if (ll != rr) {
1773b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1774e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1775a30f8f8cSSatish Balay   }
1776b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1777b3bf805bSHong Zhang 
17785e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1779e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1780b3bf805bSHong Zhang 
17815e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1782e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
17835e90f9d9SHong Zhang 
1784ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17855e90f9d9SHong Zhang 
17865e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
17870298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
17885e90f9d9SHong Zhang 
17895e90f9d9SHong Zhang   /* scale the diagonal part */
1790a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1791a30f8f8cSSatish Balay 
17925e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1793ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17940298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1795a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1796a30f8f8cSSatish Balay }
1797a30f8f8cSSatish Balay 
1798dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1799a30f8f8cSSatish Balay {
1800f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1801dfbe8321SBarry Smith   PetscErrorCode ierr;
1802a30f8f8cSSatish Balay 
1803a30f8f8cSSatish Balay   PetscFunctionBegin;
1804a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1805a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1806a30f8f8cSSatish Balay }
1807a30f8f8cSSatish Balay 
18086849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1809a30f8f8cSSatish Balay 
1810ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1811a30f8f8cSSatish Balay {
1812a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1813a30f8f8cSSatish Balay   Mat            a,b,c,d;
1814ace3abfcSBarry Smith   PetscBool      flg;
1815dfbe8321SBarry Smith   PetscErrorCode ierr;
1816a30f8f8cSSatish Balay 
1817a30f8f8cSSatish Balay   PetscFunctionBegin;
1818a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1819a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1820a30f8f8cSSatish Balay 
1821a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1822abc0a331SBarry Smith   if (flg) {
1823a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1824a30f8f8cSSatish Balay   }
1825b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1826a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1827a30f8f8cSSatish Balay }
1828a30f8f8cSSatish Balay 
18293c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
18303c896bc6SHong Zhang {
18313c896bc6SHong Zhang   PetscErrorCode ierr;
18324c7a3774SStefano Zampini   PetscBool      isbaij;
18333c896bc6SHong Zhang 
18343c896bc6SHong Zhang   PetscFunctionBegin;
18354c7a3774SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr);
18364c7a3774SStefano Zampini   if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
18373c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18383c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1839d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
18403c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1841d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
18423c896bc6SHong Zhang   } else {
18434c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
18444c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
18454c7a3774SStefano Zampini 
18463c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18473c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18483c896bc6SHong Zhang   }
1849cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
18503c896bc6SHong Zhang   PetscFunctionReturn(0);
18513c896bc6SHong Zhang }
18523c896bc6SHong Zhang 
18534994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1854273d9f13SBarry Smith {
1855dfbe8321SBarry Smith   PetscErrorCode ierr;
1856273d9f13SBarry Smith 
1857273d9f13SBarry Smith   PetscFunctionBegin;
1858535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1859273d9f13SBarry Smith   PetscFunctionReturn(0);
1860273d9f13SBarry Smith }
1861a5e6ed63SBarry Smith 
18624fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18634fe895cdSHong Zhang {
18644fe895cdSHong Zhang   PetscErrorCode ierr;
18654fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
18664fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18674fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
18684fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
18694fe895cdSHong Zhang 
18704fe895cdSHong Zhang   PetscFunctionBegin;
18714fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18724fe895cdSHong Zhang     PetscScalar alpha = a;
18734fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
18744fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1875c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
18768b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
18774fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
18784fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1879c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
18808b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1881a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1882ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1883ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1884ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1885ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
18864fe895cdSHong Zhang   } else {
18874de5dceeSHong Zhang     Mat      B;
18884de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
18894de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1890d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
18914de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
18924de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
18934de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
18944de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
18954de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
18964de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
18974de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
18984de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
18994de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
19004de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
19014de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
19024de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
190328be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
19044de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
19054de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1906d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
19074de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
19084fe895cdSHong Zhang   }
19094fe895cdSHong Zhang   PetscFunctionReturn(0);
19104fe895cdSHong Zhang }
19114fe895cdSHong Zhang 
19127dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1913a5e6ed63SBarry Smith {
19146849ba73SBarry Smith   PetscErrorCode ierr;
19151302d50aSBarry Smith   PetscInt       i;
1916afebec48SHong Zhang   PetscBool      flg;
1917a5e6ed63SBarry Smith 
19186849ba73SBarry Smith   PetscFunctionBegin;
19197dae84e0SHong Zhang   ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1920a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1921a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1922afebec48SHong Zhang     if (!flg) {
1923b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1924a5e6ed63SBarry Smith     }
19254dcd73b1SHong Zhang   }
1926a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1927a5e6ed63SBarry Smith }
1928a5e6ed63SBarry Smith 
19297d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
19307d68702bSBarry Smith {
19317d68702bSBarry Smith   PetscErrorCode ierr;
19327d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
19336f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
19347d68702bSBarry Smith 
19357d68702bSBarry Smith   PetscFunctionBegin;
19366f33a894SBarry Smith   if (!Y->preallocated) {
19377d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
19386f33a894SBarry Smith   } else if (!aij->nz) {
1939b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
19406f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1941b83222d8SBarry Smith     aij->nonew = nonew;
19427d68702bSBarry Smith   }
19437d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
19447d68702bSBarry Smith   PetscFunctionReturn(0);
19457d68702bSBarry Smith }
19467d68702bSBarry Smith 
19473b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
19483b49f96aSBarry Smith {
19493b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
19503b49f96aSBarry Smith   PetscErrorCode ierr;
19513b49f96aSBarry Smith 
19523b49f96aSBarry Smith   PetscFunctionBegin;
19533b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
19543b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
19553b49f96aSBarry Smith   if (d) {
19563b49f96aSBarry Smith     PetscInt rstart;
19573b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
19583b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
19593b49f96aSBarry Smith 
19603b49f96aSBarry Smith   }
19613b49f96aSBarry Smith   PetscFunctionReturn(0);
19623b49f96aSBarry Smith }
19633b49f96aSBarry Smith 
1964a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1965a5b7ff6bSBarry Smith {
1966a5b7ff6bSBarry Smith   PetscFunctionBegin;
1967a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1968a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1969a5b7ff6bSBarry Smith }
19703b49f96aSBarry Smith 
1971a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
19723964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1973a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1974a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1975a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
197697304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1977431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1978431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1979a30f8f8cSSatish Balay                                        0,
1980a30f8f8cSSatish Balay                                        0,
1981a30f8f8cSSatish Balay                                        0,
198297304618SKris Buschelman                                /* 10*/ 0,
1983a30f8f8cSSatish Balay                                        0,
1984a30f8f8cSSatish Balay                                        0,
198541f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1986a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
198797304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1988a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1989a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1990a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1991a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
199297304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1993a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1994a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1995a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1996d519adbfSMatthew Knepley                                /* 24*/ 0,
1997a30f8f8cSSatish Balay                                        0,
1998a30f8f8cSSatish Balay                                        0,
1999a30f8f8cSSatish Balay                                        0,
2000a30f8f8cSSatish Balay                                        0,
20014994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
2002b5df2d14SHong Zhang                                        0,
2003a30f8f8cSSatish Balay                                        0,
2004a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
2005a30f8f8cSSatish Balay                                        0,
2006d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
2007a30f8f8cSSatish Balay                                        0,
2008a30f8f8cSSatish Balay                                        0,
2009a30f8f8cSSatish Balay                                        0,
2010a30f8f8cSSatish Balay                                        0,
2011d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
20127dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
2013d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
2014a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
20153c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
2016d519adbfSMatthew Knepley                                /* 44*/ 0,
2017a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
20187d68702bSBarry Smith                                        MatShift_MPISBAIJ,
2019a30f8f8cSSatish Balay                                        0,
2020a30f8f8cSSatish Balay                                        0,
2021f73d5cc4SBarry Smith                                /* 49*/ 0,
2022a30f8f8cSSatish Balay                                        0,
2023a30f8f8cSSatish Balay                                        0,
2024a30f8f8cSSatish Balay                                        0,
2025a30f8f8cSSatish Balay                                        0,
2026d519adbfSMatthew Knepley                                /* 54*/ 0,
2027a30f8f8cSSatish Balay                                        0,
2028a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
2029a30f8f8cSSatish Balay                                        0,
2030a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
20317dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
2032a30f8f8cSSatish Balay                                        0,
2033a30f8f8cSSatish Balay                                        0,
2034357abbc8SBarry Smith                                        0,
203524d5174aSHong Zhang                                        0,
2036d519adbfSMatthew Knepley                                /* 64*/ 0,
203724d5174aSHong Zhang                                        0,
203824d5174aSHong Zhang                                        0,
203924d5174aSHong Zhang                                        0,
204024d5174aSHong Zhang                                        0,
2041d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
204224d5174aSHong Zhang                                        0,
204397304618SKris Buschelman                                        0,
204497304618SKris Buschelman                                        0,
204597304618SKris Buschelman                                        0,
2046d519adbfSMatthew Knepley                                /* 74*/ 0,
204797304618SKris Buschelman                                        0,
204897304618SKris Buschelman                                        0,
204997304618SKris Buschelman                                        0,
205097304618SKris Buschelman                                        0,
2051d519adbfSMatthew Knepley                                /* 79*/ 0,
205297304618SKris Buschelman                                        0,
205397304618SKris Buschelman                                        0,
205497304618SKris Buschelman                                        0,
20555bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
2056d519adbfSMatthew Knepley                                /* 84*/ 0,
2057865e5f61SKris Buschelman                                        0,
2058865e5f61SKris Buschelman                                        0,
2059865e5f61SKris Buschelman                                        0,
2060865e5f61SKris Buschelman                                        0,
2061d519adbfSMatthew Knepley                                /* 89*/ 0,
2062865e5f61SKris Buschelman                                        0,
2063865e5f61SKris Buschelman                                        0,
2064865e5f61SKris Buschelman                                        0,
2065865e5f61SKris Buschelman                                        0,
2066d519adbfSMatthew Knepley                                /* 94*/ 0,
2067865e5f61SKris Buschelman                                        0,
2068865e5f61SKris Buschelman                                        0,
206999cafbc1SBarry Smith                                        0,
207099cafbc1SBarry Smith                                        0,
2071d519adbfSMatthew Knepley                                /* 99*/ 0,
207299cafbc1SBarry Smith                                        0,
207399cafbc1SBarry Smith                                        0,
207499cafbc1SBarry Smith                                        0,
207599cafbc1SBarry Smith                                        0,
2076d519adbfSMatthew Knepley                                /*104*/ 0,
207799cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
2078d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
2079d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
208095936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
208195936485SShri Abhyankar                                /*109*/ 0,
208295936485SShri Abhyankar                                        0,
208395936485SShri Abhyankar                                        0,
208495936485SShri Abhyankar                                        0,
20853b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
208695936485SShri Abhyankar                                /*114*/ 0,
208795936485SShri Abhyankar                                        0,
208895936485SShri Abhyankar                                        0,
208995936485SShri Abhyankar                                        0,
209095936485SShri Abhyankar                                        0,
209195936485SShri Abhyankar                                /*119*/ 0,
209295936485SShri Abhyankar                                        0,
209395936485SShri Abhyankar                                        0,
20943964eb88SJed Brown                                        0,
20953964eb88SJed Brown                                        0,
20963964eb88SJed Brown                                /*124*/ 0,
20973964eb88SJed Brown                                        0,
20983964eb88SJed Brown                                        0,
20993964eb88SJed Brown                                        0,
21003964eb88SJed Brown                                        0,
21013964eb88SJed Brown                                /*129*/ 0,
21023964eb88SJed Brown                                        0,
21033964eb88SJed Brown                                        0,
21043964eb88SJed Brown                                        0,
21053964eb88SJed Brown                                        0,
21063964eb88SJed Brown                                /*134*/ 0,
21073964eb88SJed Brown                                        0,
21083964eb88SJed Brown                                        0,
21093964eb88SJed Brown                                        0,
21103964eb88SJed Brown                                        0,
211146533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2112f9426fe0SMark Adams                                        0,
211359f5e6ceSHong Zhang                                        0,
211459f5e6ceSHong Zhang                                        0,
211559f5e6ceSHong Zhang                                        0,
211659f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
211799cafbc1SBarry Smith };
2118a30f8f8cSSatish Balay 
2119b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2120a23d5eceSKris Buschelman {
2121476417e5SBarry Smith   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
2122dfbe8321SBarry Smith   PetscErrorCode ierr;
2123535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
21245d2a9ed1SStefano Zampini   PetscMPIInt    size;
2125a23d5eceSKris Buschelman 
2126a23d5eceSKris Buschelman   PetscFunctionBegin;
212733d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
212826283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
212926283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2130e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2131476417e5SBarry Smith   if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N);
2132476417e5SBarry Smith   if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n);
2133899cda47SBarry Smith 
2134d0f46423SBarry Smith   mbs = B->rmap->n/bs;
2135d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
2136c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
2137a23d5eceSKris Buschelman 
2138d0f46423SBarry Smith   B->rmap->bs = bs;
2139a23d5eceSKris Buschelman   b->bs2      = bs*bs;
2140a23d5eceSKris Buschelman   b->mbs      = mbs;
2141a23d5eceSKris Buschelman   b->Mbs      = Mbs;
2142de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
2143de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
2144a23d5eceSKris Buschelman 
2145a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2146d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2147a23d5eceSKris Buschelman   }
2148d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2149d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2150a23d5eceSKris Buschelman 
2151d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2152d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2153a23d5eceSKris Buschelman 
2154cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2155cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2156cb7b82ddSBarry Smith #else
2157cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2158cb7b82ddSBarry Smith #endif
2159cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2160cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2161cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2162cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
2163cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
2164cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
2165cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
2166cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
2167cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
2168cb7b82ddSBarry Smith 
2169cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
21705d2a9ed1SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2171cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2172cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
21735d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2174cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2175cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2176cb7b82ddSBarry Smith 
2177526dfc15SBarry Smith   if (!B->preallocated) {
2178f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2179d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
21809c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
21813bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2182ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2183526dfc15SBarry Smith   }
2184a23d5eceSKris Buschelman 
2185526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2186526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
218726fbe8dcSKarl Rupp 
2188526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2189cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2190cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2191a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2192a23d5eceSKris Buschelman }
2193a23d5eceSKris Buschelman 
2194dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2195dfb205c3SBarry Smith {
219602106b30SBarry Smith   PetscInt       m,rstart,cend;
21970cd7f59aSBarry Smith   PetscInt       i,j,d,nz,bd, nz_max=0,*d_nnz=0,*o_nnz=0;
2198dfb205c3SBarry Smith   const PetscInt *JJ    =0;
2199dfb205c3SBarry Smith   PetscScalar    *values=0;
2200bb80cfbbSStefano Zampini   PetscBool      roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented;
2201dfb205c3SBarry Smith   PetscErrorCode ierr;
2202*3bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2203dfb205c3SBarry Smith 
2204dfb205c3SBarry Smith   PetscFunctionBegin;
2205ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2206dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2207dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2208dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2209dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2210e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2211dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2212dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2213dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2214dfb205c3SBarry Smith 
2215dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2216dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2217dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2218dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2219dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
22200cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2221dfb205c3SBarry Smith     JJ     = jj + ii[i];
22220cd7f59aSBarry Smith     bd     = 0;
2223dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
22240cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2225dfb205c3SBarry Smith       JJ++;
22260cd7f59aSBarry Smith       bd++;
2227dfb205c3SBarry Smith     }
2228dfb205c3SBarry Smith     d  = 0;
2229dfb205c3SBarry Smith     for (; j<nz; j++) {
2230dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2231dfb205c3SBarry Smith       d++;
2232dfb205c3SBarry Smith     }
2233dfb205c3SBarry Smith     d_nnz[i] = d;
22340cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
22350cd7f59aSBarry Smith     nz       = nz - bd;
22360cd7f59aSBarry Smith     nz_max = PetscMax(nz_max,nz);
2237dfb205c3SBarry Smith   }
2238dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2239bb80cfbbSStefano Zampini   ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
2240dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2241dfb205c3SBarry Smith 
2242dfb205c3SBarry Smith   values = (PetscScalar*)V;
2243dfb205c3SBarry Smith   if (!values) {
2244580bdb30SBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2245dfb205c3SBarry Smith   }
2246dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2247dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2248dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2249dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2250bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2251dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2252dfb205c3SBarry Smith       ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2253bb80cfbbSStefano Zampini     } else {                    /* block ordering does not match so we can only insert one block at a time. */
2254bb80cfbbSStefano Zampini       PetscInt j;
22550cd7f59aSBarry Smith       for (j=0; j<ncols; j++) {
22560cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
22570cd7f59aSBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
22580cd7f59aSBarry Smith       }
22590cd7f59aSBarry Smith     }
2260dfb205c3SBarry Smith   }
2261dfb205c3SBarry Smith 
2262dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2263*3bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
2264*3bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
2265dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2266dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2267*3bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
2268*3bd0feecSPierre Jolivet 
22697827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2270dfb205c3SBarry Smith   PetscFunctionReturn(0);
2271dfb205c3SBarry Smith }
2272dfb205c3SBarry Smith 
22730bad9183SKris Buschelman /*MC
2274fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2275828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2276828413b8SBarry Smith    the matrix is stored.
2277828413b8SBarry Smith 
2278828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2279828413b8SBarry Smith    can call MatSetOption(Mat, MAT_HERMITIAN);
22800bad9183SKris Buschelman 
22810bad9183SKris Buschelman    Options Database Keys:
22820bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
22830bad9183SKris Buschelman 
2284476417e5SBarry Smith    Notes:
2285476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2286476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2287476417e5SBarry Smith 
22880bad9183SKris Buschelman    Level: beginner
22890bad9183SKris Buschelman 
2290476417e5SBarry Smith .seealso: MatCreateMPISBAIJ(), MATSEQSBAIJ, MatType
22910bad9183SKris Buschelman M*/
22920bad9183SKris Buschelman 
22938cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2294b5df2d14SHong Zhang {
2295b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2296dfbe8321SBarry Smith   PetscErrorCode ierr;
229794ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2298b5df2d14SHong Zhang 
2299b5df2d14SHong Zhang   PetscFunctionBegin;
2300b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2301b0a32e0cSBarry Smith   B->data = (void*)b;
2302b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2303b5df2d14SHong Zhang 
2304b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2305b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2306b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2307b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
230826fbe8dcSKarl Rupp 
2309ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2310ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2311b5df2d14SHong Zhang 
2312b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2313854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2314b5df2d14SHong Zhang 
2315b5df2d14SHong Zhang   /* build cache for off array entries formed */
2316ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
231726fbe8dcSKarl Rupp 
2318b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
23190298fd71SBarry Smith   b->colmap      = NULL;
23200298fd71SBarry Smith   b->garray      = NULL;
2321b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2322b5df2d14SHong Zhang 
2323b5df2d14SHong Zhang   /* stuff used in block assembly */
2324b5df2d14SHong Zhang   b->barray = 0;
2325b5df2d14SHong Zhang 
2326b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2327b5df2d14SHong Zhang   b->lvec    = 0;
2328b5df2d14SHong Zhang   b->Mvctx   = 0;
232940781036SHong Zhang   b->slvec0  = 0;
233040781036SHong Zhang   b->slvec0b = 0;
233140781036SHong Zhang   b->slvec1  = 0;
233240781036SHong Zhang   b->slvec1a = 0;
233340781036SHong Zhang   b->slvec1b = 0;
233440781036SHong Zhang   b->sMvctx  = 0;
2335b5df2d14SHong Zhang 
2336b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2337b5df2d14SHong Zhang   b->rowindices   = 0;
2338b5df2d14SHong Zhang   b->rowvalues    = 0;
2339b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2340b5df2d14SHong Zhang 
2341b5df2d14SHong Zhang   /* hash table stuff */
2342b5df2d14SHong Zhang   b->ht           = 0;
2343b5df2d14SHong Zhang   b->hd           = 0;
2344b5df2d14SHong Zhang   b->ht_size      = 0;
2345b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2346b5df2d14SHong Zhang   b->ht_fact      = 0;
2347b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2348b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2349b5df2d14SHong Zhang 
23507dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
23517a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
23527a868f3eSHong Zhang 
235359ffdab8SBarry Smith   b->in_loc = 0;
235459ffdab8SBarry Smith   b->v_loc  = 0;
235559ffdab8SBarry Smith   b->n_loc  = 0;
235694ae4db5SBarry Smith 
2357bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2358bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2359bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2360bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
23616214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
23626214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
23636214f412SHong Zhang #endif
2364b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_XAIJ);CHKERRQ(ierr);
2365b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_XAIJ);CHKERRQ(ierr);
2366aa5a9175SDahai Guo 
236723ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
236823ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
236923ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
237023ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
23719899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
237226fbe8dcSKarl Rupp 
237313647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
237413647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
237513647f61SHong Zhang 
237617667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
237794ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
237894ae4db5SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
237994ae4db5SBarry Smith   if (flg) {
238094ae4db5SBarry Smith     PetscReal fact = 1.39;
238194ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
238294ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
238394ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
238494ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
238594ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
238694ae4db5SBarry Smith   }
238794ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2388b5df2d14SHong Zhang   PetscFunctionReturn(0);
2389b5df2d14SHong Zhang }
2390b5df2d14SHong Zhang 
2391209238afSKris Buschelman /*MC
2392002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2393209238afSKris Buschelman 
2394209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2395209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2396209238afSKris Buschelman 
2397209238afSKris Buschelman    Options Database Keys:
2398209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2399209238afSKris Buschelman 
2400209238afSKris Buschelman   Level: beginner
2401209238afSKris Buschelman 
2402209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2403209238afSKris Buschelman M*/
2404209238afSKris Buschelman 
2405b5df2d14SHong Zhang /*@C
2406b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2407b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2408b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2409b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2410b5df2d14SHong Zhang 
2411b5df2d14SHong Zhang    Collective on Mat
2412b5df2d14SHong Zhang 
2413b5df2d14SHong Zhang    Input Parameters:
24141c4f3114SJed Brown +  B - the matrix
2415bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2416bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2417b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2418b5df2d14SHong Zhang            submatrix  (same for all local rows)
2419b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
24206d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
24210298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
242295742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2423b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2424b5df2d14SHong Zhang            submatrix (same for all local rows).
2425b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2426c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
24270298fd71SBarry Smith            (possibly different for each block row) or NULL.
2428b5df2d14SHong Zhang 
2429b5df2d14SHong Zhang 
2430b5df2d14SHong Zhang    Options Database Keys:
2431a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2432b5df2d14SHong Zhang                      block calculations (much slower)
2433a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2434b5df2d14SHong Zhang 
2435b5df2d14SHong Zhang    Notes:
2436b5df2d14SHong Zhang 
2437b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2438b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2439b5df2d14SHong Zhang 
244049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
244149a6f317SBarry Smith 
2442b5df2d14SHong Zhang    Storage Information:
2443b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2444b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2445b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2446b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2447b5df2d14SHong Zhang 
2448b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2449b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
24500298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2451b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2452b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2453b5df2d14SHong Zhang 
2454aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2455aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2456aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2457aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2458aa95bbe8SBarry Smith 
2459b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2460b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2461b5df2d14SHong Zhang 
2462b5df2d14SHong Zhang .vb
2463b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2464a4b1a0f6SJed Brown           --------------------------
2465c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2466c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2467c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2468a4b1a0f6SJed Brown           --------------------------
2469b5df2d14SHong Zhang .ve
2470b5df2d14SHong Zhang 
2471b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2472b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
24736d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
24746d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2475b5df2d14SHong Zhang 
24766d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
24776d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2478c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2479c2fc9fa9SBarry Smith 
2480b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2481b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2482b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2483b5df2d14SHong Zhang    matrices.
2484b5df2d14SHong Zhang 
2485b5df2d14SHong Zhang    Level: intermediate
2486b5df2d14SHong Zhang 
2487ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2488b5df2d14SHong Zhang @*/
24897087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2490b5df2d14SHong Zhang {
24914ac538c5SBarry Smith   PetscErrorCode ierr;
2492b5df2d14SHong Zhang 
2493b5df2d14SHong Zhang   PetscFunctionBegin;
24946ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
24956ba663aaSJed Brown   PetscValidType(B,1);
24966ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
24974ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2498b5df2d14SHong Zhang   PetscFunctionReturn(0);
2499b5df2d14SHong Zhang }
2500b5df2d14SHong Zhang 
2501a30f8f8cSSatish Balay /*@C
250269b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2503a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2504a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2505a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2506a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2507a30f8f8cSSatish Balay 
2508d083f849SBarry Smith    Collective
2509a30f8f8cSSatish Balay 
2510a30f8f8cSSatish Balay    Input Parameters:
2511a30f8f8cSSatish Balay +  comm - MPI communicator
2512bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2513bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2514a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2515a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2516a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2517a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2518a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2519a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2520a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2521a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2522a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2523a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2524a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
25256d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
25260298fd71SBarry Smith            (possibly different for each block block row) or NULL.
252795742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
252895742e49SBarry Smith            set its value even if it is zero.
2529a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2530a30f8f8cSSatish Balay            submatrix (same for all local rows).
2531a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2532a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
25330298fd71SBarry Smith            each block row) or NULL.
2534a30f8f8cSSatish Balay 
2535a30f8f8cSSatish Balay    Output Parameter:
2536a30f8f8cSSatish Balay .  A - the matrix
2537a30f8f8cSSatish Balay 
2538a30f8f8cSSatish Balay    Options Database Keys:
2539a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2540a30f8f8cSSatish Balay                      block calculations (much slower)
2541a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2542a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2543a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2544a30f8f8cSSatish Balay 
2545175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2546f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2547175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2548175b88e8SBarry Smith 
2549a30f8f8cSSatish Balay    Notes:
2550d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
25516d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2552d1be2dadSMatthew Knepley 
2553a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2554a30f8f8cSSatish Balay    (possibly both).
2555a30f8f8cSSatish Balay 
2556a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2557a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2558a30f8f8cSSatish Balay 
255949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
256049a6f317SBarry Smith 
2561a30f8f8cSSatish Balay    Storage Information:
2562a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2563a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2564a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2565a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2566a30f8f8cSSatish Balay 
2567a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2568a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
25690298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2570a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2571a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2572a30f8f8cSSatish Balay 
2573a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2574a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2575a30f8f8cSSatish Balay 
2576a30f8f8cSSatish Balay .vb
2577a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2578a4b1a0f6SJed Brown           --------------------------
2579c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2580c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2581c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2582a4b1a0f6SJed Brown           --------------------------
2583a30f8f8cSSatish Balay .ve
2584a30f8f8cSSatish Balay 
2585a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2586a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
25876d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
25886d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2589a30f8f8cSSatish Balay 
25906d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
25916d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2592a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2593a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2594a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2595a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2596a30f8f8cSSatish Balay    matrices.
2597a30f8f8cSSatish Balay 
2598a30f8f8cSSatish Balay    Level: intermediate
2599a30f8f8cSSatish Balay 
260069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2601a30f8f8cSSatish Balay @*/
2602a30f8f8cSSatish Balay 
260369b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2604a30f8f8cSSatish Balay {
26056849ba73SBarry Smith   PetscErrorCode ierr;
26061302d50aSBarry Smith   PetscMPIInt    size;
2607a30f8f8cSSatish Balay 
2608a30f8f8cSSatish Balay   PetscFunctionBegin;
2609f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2610f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2611273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2612273d9f13SBarry Smith   if (size > 1) {
2613b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2614b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2615273d9f13SBarry Smith   } else {
2616273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2617273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2618273d9f13SBarry Smith   }
2619a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2620a30f8f8cSSatish Balay }
2621a30f8f8cSSatish Balay 
2622a30f8f8cSSatish Balay 
26236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2624a30f8f8cSSatish Balay {
2625a30f8f8cSSatish Balay   Mat            mat;
2626a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2627dfbe8321SBarry Smith   PetscErrorCode ierr;
2628d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2629387bc808SHong Zhang   PetscScalar    *array;
2630a30f8f8cSSatish Balay 
2631a30f8f8cSSatish Balay   PetscFunctionBegin;
2632a30f8f8cSSatish Balay   *newmat = 0;
263326fbe8dcSKarl Rupp 
2634ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2635d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
26367adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
26371e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
26381e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2639e1b6402fSHong Zhang 
2640d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2641273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
264282327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
26437fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26447fff6886SHong Zhang 
2645b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2646a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2647a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2648a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2649a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2650a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2651a30f8f8cSSatish Balay 
2652a30f8f8cSSatish Balay   a->size         = oldmat->size;
2653a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2654a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2655a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2656a30f8f8cSSatish Balay   a->rowindices   = 0;
2657a30f8f8cSSatish Balay   a->rowvalues    = 0;
2658a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2659a30f8f8cSSatish Balay   a->barray       = 0;
2660899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2661899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2662899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2663899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2664a30f8f8cSSatish Balay 
2665a30f8f8cSSatish Balay   /* hash table stuff */
2666a30f8f8cSSatish Balay   a->ht           = 0;
2667a30f8f8cSSatish Balay   a->hd           = 0;
2668a30f8f8cSSatish Balay   a->ht_size      = 0;
2669a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2670a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2671a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2672a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2673a30f8f8cSSatish Balay 
2674580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr);
2675a30f8f8cSSatish Balay   if (oldmat->colmap) {
2676a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2677a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2678a30f8f8cSSatish Balay #else
2679854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
26803bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2681580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
2682a30f8f8cSSatish Balay #endif
2683a30f8f8cSSatish Balay   } else a->colmap = 0;
2684387bc808SHong Zhang 
2685a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2686785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
26873bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2688580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
2689a30f8f8cSSatish Balay   } else a->garray = 0;
2690a30f8f8cSSatish Balay 
2691ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2692a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
26933bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2694a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
26953bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
269682327fa8SHong Zhang 
269782327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
26983bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
269982327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
27003bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2701387bc808SHong Zhang 
2702387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
27031ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2704778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2705778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
27061ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
27071ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2708778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
27091ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
27103bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
27113bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
27123bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
27133bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
27143bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2715387bc808SHong Zhang 
2716387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2717387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2718387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
27193bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
272082327fa8SHong Zhang 
2721a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
27223bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2723a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
27243bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2725140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2726a30f8f8cSSatish Balay   *newmat = mat;
2727a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2728a30f8f8cSSatish Balay }
2729a30f8f8cSSatish Balay 
2730112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
273195936485SShri Abhyankar {
273295936485SShri Abhyankar   PetscErrorCode ierr;
273395936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
273495936485SShri Abhyankar   PetscScalar    *vals,*buf;
2735ce94432eSBarry Smith   MPI_Comm       comm;
273695936485SShri Abhyankar   MPI_Status     status;
2737adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2738adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
273995936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
27403059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
274195936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2742461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
274395936485SShri Abhyankar   int            fd;
27447f489da9SVaclav Hapla   PetscBool      isbinary;
274595936485SShri Abhyankar 
274695936485SShri Abhyankar   PetscFunctionBegin;
27477f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
27487f489da9SVaclav Hapla   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name);
27497f489da9SVaclav Hapla 
2750c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2751c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2752ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
27530298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
27540298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
275595936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
27563059b6faSBarry Smith   if (bs < 0) bs = 1;
275795936485SShri Abhyankar 
275895936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
275995936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
276095936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
27615872f025SBarry Smith   if (!rank) {
27629860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,(char*)header,4,NULL,PETSC_INT);CHKERRQ(ierr);
276395936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
276402f61395SBarry Smith     if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
276595936485SShri Abhyankar   }
276695936485SShri Abhyankar 
276795936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
276826fbe8dcSKarl Rupp   M    = header[1];
276926fbe8dcSKarl Rupp   N    = header[2];
277095936485SShri Abhyankar 
277195936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2772461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2773461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
277495936485SShri Abhyankar 
277595936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
277695936485SShri Abhyankar 
277795936485SShri Abhyankar   /*
277895936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
277995936485SShri Abhyankar      divisible by the blocksize
278095936485SShri Abhyankar   */
278195936485SShri Abhyankar   Mbs        = M/bs;
278295936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
278395936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
278495936485SShri Abhyankar   else                  Mbs++;
278595936485SShri Abhyankar   if (extra_rows &&!rank) {
278695936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
278795936485SShri Abhyankar   }
278895936485SShri Abhyankar 
278995936485SShri Abhyankar   /* determine ownership of all rows */
279095936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
279195936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
279295936485SShri Abhyankar     m   = mbs*bs;
279395936485SShri Abhyankar   } else { /* User Set */
279495936485SShri Abhyankar     m   = newmat->rmap->n;
279595936485SShri Abhyankar     mbs = m/bs;
279695936485SShri Abhyankar   }
2797dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
27984dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
279995936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
280095936485SShri Abhyankar   rowners[0] = 0;
280195936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
280295936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
280395936485SShri Abhyankar   rstart = rowners[rank];
280495936485SShri Abhyankar   rend   = rowners[rank+1];
280595936485SShri Abhyankar 
280695936485SShri Abhyankar   /* distribute row lengths to all processors */
2807785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
280895936485SShri Abhyankar   if (!rank) {
2809854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
28109860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,rowlengths,M,NULL,PETSC_INT);CHKERRQ(ierr);
281195936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2812785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
281395936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
281495936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
281595936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
281695936485SShri Abhyankar   } else {
281795936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
281895936485SShri Abhyankar   }
281995936485SShri Abhyankar 
282095936485SShri Abhyankar   if (!rank) {   /* procs[0] */
282195936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2822580bdb30SBarry Smith     ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr);
282395936485SShri Abhyankar     for (i=0; i<size; i++) {
282495936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
282595936485SShri Abhyankar         procsnz[i] += rowlengths[j];
282695936485SShri Abhyankar       }
282795936485SShri Abhyankar     }
282895936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
282995936485SShri Abhyankar 
283095936485SShri Abhyankar     /* determine max buffer needed and allocate it */
283195936485SShri Abhyankar     maxnz = 0;
283295936485SShri Abhyankar     for (i=0; i<size; i++) {
283395936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
283495936485SShri Abhyankar     }
2835785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
283695936485SShri Abhyankar 
283795936485SShri Abhyankar     /* read in my part of the matrix column indices  */
283895936485SShri Abhyankar     nz     = procsnz[0];
2839785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
284095936485SShri Abhyankar     mycols = ibuf;
284195936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
28429860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,mycols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
284326fbe8dcSKarl Rupp     if (size == 1) {
284426fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
284526fbe8dcSKarl Rupp     }
284695936485SShri Abhyankar 
284795936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
284895936485SShri Abhyankar     for (i=1; i<size-1; i++) {
284995936485SShri Abhyankar       nz   = procsnz[i];
28509860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
285195936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
285295936485SShri Abhyankar     }
285395936485SShri Abhyankar     /* read in the stuff for the last proc */
285495936485SShri Abhyankar     if (size != 1) {
285595936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
28569860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
285795936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
285895936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
285995936485SShri Abhyankar     }
286095936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
286195936485SShri Abhyankar   } else {  /* procs[i], i>0 */
286295936485SShri Abhyankar     /* determine buffer space needed for message */
286395936485SShri Abhyankar     nz = 0;
286426fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2865785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
286695936485SShri Abhyankar     mycols = ibuf;
286795936485SShri Abhyankar     /* receive message of column indices*/
286895936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
286995936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
287095936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
287195936485SShri Abhyankar   }
287295936485SShri Abhyankar 
287395936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2874dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2875580bdb30SBarry Smith   ierr     = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
287695936485SShri Abhyankar   rowcount = 0;
287795936485SShri Abhyankar   nzcount  = 0;
287895936485SShri Abhyankar   for (i=0; i<mbs; i++) {
287995936485SShri Abhyankar     dcount  = 0;
288095936485SShri Abhyankar     odcount = 0;
288195936485SShri Abhyankar     for (j=0; j<bs; j++) {
288295936485SShri Abhyankar       kmax = locrowlens[rowcount];
288395936485SShri Abhyankar       for (k=0; k<kmax; k++) {
288495936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
288595936485SShri Abhyankar         if (!mask[tmp]) {
288695936485SShri Abhyankar           mask[tmp] = 1;
288795936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
288895936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
288995936485SShri Abhyankar         }
289095936485SShri Abhyankar       }
289195936485SShri Abhyankar       rowcount++;
289295936485SShri Abhyankar     }
289395936485SShri Abhyankar 
289495936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
289595936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
289695936485SShri Abhyankar 
289795936485SShri Abhyankar     /* zero out the mask elements we set */
289895936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
289995936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
290095936485SShri Abhyankar   }
290195936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
290295936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
29036816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
290495936485SShri Abhyankar 
290595936485SShri Abhyankar   if (!rank) {
2906785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
290795936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
290895936485SShri Abhyankar     nz     = procsnz[0];
290995936485SShri Abhyankar     vals   = buf;
291095936485SShri Abhyankar     mycols = ibuf;
291195936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
29129860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
291326fbe8dcSKarl Rupp     if (size == 1) {
291426fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
291526fbe8dcSKarl Rupp     }
291695936485SShri Abhyankar 
291795936485SShri Abhyankar     /* insert into matrix */
291895936485SShri Abhyankar     jj = rstart*bs;
291995936485SShri Abhyankar     for (i=0; i<m; i++) {
292095936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
292195936485SShri Abhyankar       mycols += locrowlens[i];
292295936485SShri Abhyankar       vals   += locrowlens[i];
292395936485SShri Abhyankar       jj++;
292495936485SShri Abhyankar     }
292595936485SShri Abhyankar 
292695936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
292795936485SShri Abhyankar     for (i=1; i<size-1; i++) {
292895936485SShri Abhyankar       nz   = procsnz[i];
292995936485SShri Abhyankar       vals = buf;
29309860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
293195936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
293295936485SShri Abhyankar     }
293395936485SShri Abhyankar     /* the last proc */
293495936485SShri Abhyankar     if (size != 1) {
293595936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
293695936485SShri Abhyankar       vals = buf;
29379860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
293895936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
293995936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
294095936485SShri Abhyankar     }
294195936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
294295936485SShri Abhyankar 
294395936485SShri Abhyankar   } else {
294495936485SShri Abhyankar     /* receive numeric values */
2945785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
294695936485SShri Abhyankar 
294795936485SShri Abhyankar     /* receive message of values*/
294895936485SShri Abhyankar     vals   = buf;
294995936485SShri Abhyankar     mycols = ibuf;
295095936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
295195936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
295295936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
295395936485SShri Abhyankar 
295495936485SShri Abhyankar     /* insert into matrix */
295595936485SShri Abhyankar     jj = rstart*bs;
295695936485SShri Abhyankar     for (i=0; i<m; i++) {
295795936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
295895936485SShri Abhyankar       mycols += locrowlens[i];
295995936485SShri Abhyankar       vals   += locrowlens[i];
296095936485SShri Abhyankar       jj++;
296195936485SShri Abhyankar     }
296295936485SShri Abhyankar   }
296395936485SShri Abhyankar 
296495936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
296595936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
296695936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
296795936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
296895936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
296995936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
297095936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
297195936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
297295936485SShri Abhyankar   PetscFunctionReturn(0);
297395936485SShri Abhyankar }
297495936485SShri Abhyankar 
2975dcf5cc72SBarry Smith /*XXXXX@
2976a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2977a30f8f8cSSatish Balay 
2978a30f8f8cSSatish Balay    Input Parameters:
2979a30f8f8cSSatish Balay .  mat  - the matrix
2980a30f8f8cSSatish Balay .  fact - factor
2981a30f8f8cSSatish Balay 
2982c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2983a30f8f8cSSatish Balay 
2984a30f8f8cSSatish Balay    Level: advanced
2985a30f8f8cSSatish Balay 
2986a30f8f8cSSatish Balay   Notes:
2987a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2988a30f8f8cSSatish Balay 
2989a30f8f8cSSatish Balay .seealso: MatSetOption()
2990dcf5cc72SBarry Smith @XXXXX*/
2991dcf5cc72SBarry Smith 
299224d5174aSHong Zhang 
2993985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
299424d5174aSHong Zhang {
299524d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2996f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2997ca54ac64SHong Zhang   PetscReal      atmp;
299887828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2999dfbe8321SBarry Smith   PetscErrorCode ierr;
30001302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
30011302d50aSBarry Smith   PetscMPIInt    rank,size;
30021302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
300387828ca2SBarry Smith   PetscScalar    *va;
30048a1c53f2SBarry Smith   MatScalar      *ba;
3005f4c0e9e4SHong Zhang   MPI_Status     stat;
300624d5174aSHong Zhang 
300724d5174aSHong Zhang   PetscFunctionBegin;
3008e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
30090298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
30101ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
3011f4c0e9e4SHong Zhang 
3012ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
3013ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
3014f4c0e9e4SHong Zhang 
3015d0f46423SBarry Smith   bs  = A->rmap->bs;
3016f4c0e9e4SHong Zhang   mbs = a->mbs;
3017f4c0e9e4SHong Zhang   Mbs = a->Mbs;
3018f4c0e9e4SHong Zhang   ba  = b->a;
3019f4c0e9e4SHong Zhang   bi  = b->i;
3020f4c0e9e4SHong Zhang   bj  = b->j;
3021f4c0e9e4SHong Zhang 
3022f4c0e9e4SHong Zhang   /* find ownerships */
3023d0f46423SBarry Smith   rowners_bs = A->rmap->range;
3024f4c0e9e4SHong Zhang 
3025f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
3026580bdb30SBarry Smith   ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr);
3027f4c0e9e4SHong Zhang 
3028f4c0e9e4SHong Zhang   /* row_max for B */
3029b8475685SHong Zhang   if (rank != size-1) {
3030f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
3031f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
3032f4c0e9e4SHong Zhang       brow  = bs*i;
3033f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
3034f4c0e9e4SHong Zhang         bcol = bs*(*bj);
3035f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
3036ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
303704d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
3038f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
3039f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
3040ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
3041ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
3042f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
3043f4c0e9e4SHong Zhang           }
3044f4c0e9e4SHong Zhang         }
3045f4c0e9e4SHong Zhang         bj++;
3046f4c0e9e4SHong Zhang       }
3047f4c0e9e4SHong Zhang     }
3048f4c0e9e4SHong Zhang 
3049f4c0e9e4SHong Zhang     /* send values to its owners */
3050f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
3051f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
3052ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
3053ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
3054ca54ac64SHong Zhang     }
3055f4c0e9e4SHong Zhang   }
3056f4c0e9e4SHong Zhang 
3057f4c0e9e4SHong Zhang   /* receive values */
3058ca54ac64SHong Zhang   if (rank) {
3059f4c0e9e4SHong Zhang     rvalues = work;
3060ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
3061f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
3062ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
3063f4c0e9e4SHong Zhang       /* process values */
3064f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
3065ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
3066f4c0e9e4SHong Zhang       }
3067f4c0e9e4SHong Zhang     }
3068ca54ac64SHong Zhang   }
3069f4c0e9e4SHong Zhang 
30701ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
3071ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
307224d5174aSHong Zhang   PetscFunctionReturn(0);
307324d5174aSHong Zhang }
30742798e883SHong Zhang 
307541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
30762798e883SHong Zhang {
30772798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
3078dfbe8321SBarry Smith   PetscErrorCode    ierr;
3079d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
30803649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
3081ffe4fb16SHong Zhang   Vec               bb1;
30823649974fSBarry Smith   const PetscScalar *b;
3083ffe4fb16SHong Zhang 
3084ffe4fb16SHong Zhang   PetscFunctionBegin;
3085e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3086e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
3087ffe4fb16SHong Zhang 
3088a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
308941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3090a2b30743SBarry Smith     PetscFunctionReturn(0);
3091a2b30743SBarry Smith   }
3092a2b30743SBarry Smith 
3093ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
3094ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
309541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
3096ffe4fb16SHong Zhang       its--;
3097ffe4fb16SHong Zhang     }
3098ffe4fb16SHong Zhang 
3099ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
3100ffe4fb16SHong Zhang     while (its--) {
3101ffe4fb16SHong Zhang 
3102ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
3103ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3104ffe4fb16SHong Zhang 
3105ffe4fb16SHong Zhang       /* copy xx into slvec0a */
31061ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
31071ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3108580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr);
31091ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
3110ffe4fb16SHong Zhang 
3111efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
3112ffe4fb16SHong Zhang 
3113ffe4fb16SHong Zhang       /* copy bb into slvec1a */
31141ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
31153649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
3116580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr);
31171ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
3118ffe4fb16SHong Zhang 
3119ffe4fb16SHong Zhang       /* set slvec1b = 0 */
3120fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3121ffe4fb16SHong Zhang 
3122ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
31231ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3124a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
3125ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3126ffe4fb16SHong Zhang 
3127ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
3128ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
3129ffe4fb16SHong Zhang 
3130ffe4fb16SHong Zhang       /* local diagonal sweep */
313141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
3132ffe4fb16SHong Zhang     }
31336bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
3134fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
313541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3136fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
313741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3138fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
3139fa22f6d0SBarry Smith     Vec               xx1;
3140ace3abfcSBarry Smith     PetscBool         hasop;
314120f1ed55SBarry Smith     const PetscScalar *diag;
3142887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
314320f1ed55SBarry Smith     PetscInt          i,n;
3144fa22f6d0SBarry Smith 
3145fa22f6d0SBarry Smith     if (!mat->xx1) {
3146fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
3147fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
3148fa22f6d0SBarry Smith     }
3149fa22f6d0SBarry Smith     xx1 = mat->xx1;
3150fa22f6d0SBarry Smith     bb1 = mat->bb1;
3151fa22f6d0SBarry Smith 
315241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
3153fa22f6d0SBarry Smith 
3154fa22f6d0SBarry Smith     if (!mat->diag) {
3155effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
31562a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
3157fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
3158fa22f6d0SBarry Smith     }
3159fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
3160fa22f6d0SBarry Smith 
3161fa22f6d0SBarry Smith     if (hasop) {
3162fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
3163887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
316420f1ed55SBarry Smith     } else {
316520f1ed55SBarry Smith       /*
316620f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
316720f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
3168887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
316920f1ed55SBarry Smith       */
317020f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
31713649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
31723649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
317320f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
317420f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
3175887ee2caSBarry Smith       if (omega == 1.0) {
317626fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
317720f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
3178887ee2caSBarry Smith       } else {
317926fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
3180887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
3181887ee2caSBarry Smith       }
318220f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
31833649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
31843649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
318520f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
318620f1ed55SBarry Smith     }
3187fa22f6d0SBarry Smith 
3188fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
3189fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3190fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3191fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
3192fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3193580bdb30SBarry Smith     ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
3194fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
3195fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3196fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3197fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3198effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
3199fa22f6d0SBarry Smith 
3200fa22f6d0SBarry Smith     /* local sweep */
320141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
3202fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
3203f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
3204ffe4fb16SHong Zhang   PetscFunctionReturn(0);
3205ffe4fb16SHong Zhang }
3206ffe4fb16SHong Zhang 
320741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
3208ffe4fb16SHong Zhang {
3209ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
3210dfbe8321SBarry Smith   PetscErrorCode ierr;
32112798e883SHong Zhang   Vec            lvec1,bb1;
32122798e883SHong Zhang 
32132798e883SHong Zhang   PetscFunctionBegin;
3214e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3215e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
32162798e883SHong Zhang 
3217c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
32182798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
321941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
32202798e883SHong Zhang       its--;
32212798e883SHong Zhang     }
32222798e883SHong Zhang 
32232798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
32242798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
32252798e883SHong Zhang     while (its--) {
3226ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32272798e883SHong Zhang 
32282798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
32292798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3230efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
32312798e883SHong Zhang 
3232ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32332798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3234ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32352798e883SHong Zhang 
32362798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3237efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
32382798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
32392798e883SHong Zhang 
3240ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32412798e883SHong Zhang 
3242c14dc6b6SHong Zhang       /* diagonal sweep */
324341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
32442798e883SHong Zhang     }
32456bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
32466bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
32476bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
32482798e883SHong Zhang   PetscFunctionReturn(0);
32492798e883SHong Zhang }
32502798e883SHong Zhang 
3251dfb205c3SBarry Smith /*@
3252dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3253dfb205c3SBarry Smith          CSR format the local rows.
3254dfb205c3SBarry Smith 
3255d083f849SBarry Smith    Collective
3256dfb205c3SBarry Smith 
3257dfb205c3SBarry Smith    Input Parameters:
3258dfb205c3SBarry Smith +  comm - MPI communicator
3259dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3260dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3261dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3262dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3263dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3264dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3265dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3266483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
3267dfb205c3SBarry Smith .   j - column indices
3268dfb205c3SBarry Smith -   a - matrix values
3269dfb205c3SBarry Smith 
3270dfb205c3SBarry Smith    Output Parameter:
3271dfb205c3SBarry Smith .   mat - the matrix
3272dfb205c3SBarry Smith 
3273dfb205c3SBarry Smith    Level: intermediate
3274dfb205c3SBarry Smith 
3275dfb205c3SBarry Smith    Notes:
3276dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3277dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3278dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3279dfb205c3SBarry Smith 
3280dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3281dfb205c3SBarry Smith 
3282dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
328369b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3284dfb205c3SBarry Smith @*/
32857087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3286dfb205c3SBarry Smith {
3287dfb205c3SBarry Smith   PetscErrorCode ierr;
3288dfb205c3SBarry Smith 
3289dfb205c3SBarry Smith 
3290dfb205c3SBarry Smith   PetscFunctionBegin;
3291f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3292dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3293dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3294dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3295dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3296dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3297dfb205c3SBarry Smith   PetscFunctionReturn(0);
3298dfb205c3SBarry Smith }
3299dfb205c3SBarry Smith 
3300dfb205c3SBarry Smith 
3301dfb205c3SBarry Smith /*@C
3302664954b6SBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values
3303dfb205c3SBarry Smith 
3304d083f849SBarry Smith    Collective
3305dfb205c3SBarry Smith 
3306dfb205c3SBarry Smith    Input Parameters:
33071c4f3114SJed Brown +  B - the matrix
3308dfb205c3SBarry Smith .  bs - the block size
3309dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3310dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3311dfb205c3SBarry Smith -  v - optional values in the matrix
3312dfb205c3SBarry Smith 
3313664954b6SBarry Smith    Level: advanced
3314664954b6SBarry Smith 
3315664954b6SBarry Smith    Notes:
33160cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
33170cd7f59aSBarry Smith    and usually the numerical values as well
33180cd7f59aSBarry Smith 
331950c5228eSBarry Smith    Any entries below the diagonal are ignored
3320dfb205c3SBarry Smith 
332169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3322dfb205c3SBarry Smith @*/
33237087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3324dfb205c3SBarry Smith {
33254ac538c5SBarry Smith   PetscErrorCode ierr;
3326dfb205c3SBarry Smith 
3327dfb205c3SBarry Smith   PetscFunctionBegin;
33284ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3329dfb205c3SBarry Smith   PetscFunctionReturn(0);
3330dfb205c3SBarry Smith }
3331dfb205c3SBarry Smith 
333210c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
33334dcd73b1SHong Zhang {
33344dcd73b1SHong Zhang   PetscErrorCode ierr;
333510c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
333610c56fdeSHong Zhang   PetscInt       *indx;
333710c56fdeSHong Zhang   PetscScalar    *values;
3338dfb205c3SBarry Smith 
33394dcd73b1SHong Zhang   PetscFunctionBegin;
33404dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
334110c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
334210c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
3343de25e9cbSPierre Jolivet     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
334410c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
3345de25e9cbSPierre Jolivet     PetscMPIInt    rank,size;
33464dcd73b1SHong Zhang 
334710c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
334810c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
334910c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
3350da91a574SPierre Jolivet       ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N);
335110c56fdeSHong Zhang     }
3352da91a574SPierre Jolivet     nbs = n/cbs;
33534dcd73b1SHong Zhang 
33544dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
3355de25e9cbSPierre Jolivet     ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */
3356de25e9cbSPierre Jolivet 
3357de25e9cbSPierre Jolivet     ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
3358de25e9cbSPierre Jolivet     ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr);
3359de25e9cbSPierre Jolivet     if (rank == size-1) {
3360de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
3361de25e9cbSPierre Jolivet       if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs);
3362de25e9cbSPierre Jolivet     }
3363de25e9cbSPierre Jolivet 
3364de25e9cbSPierre Jolivet     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */
3365e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
336610c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
33674dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
33684dcd73b1SHong Zhang       nnz  = nnz/bs;
33694dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
33704dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
33714dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
33724dcd73b1SHong Zhang     }
3373e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
33744dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
33754dcd73b1SHong Zhang 
33764dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
3377de25e9cbSPierre Jolivet     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
33784dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
3379ce94fc41SPierre Jolivet     ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr);
3380ce94fc41SPierre Jolivet     ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr);
33814dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
33824dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
33834dcd73b1SHong Zhang   }
33844dcd73b1SHong Zhang 
338510c56fdeSHong Zhang   /* numeric phase */
33864dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
338710c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
33884dcd73b1SHong Zhang 
3389e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
33904dcd73b1SHong Zhang   for (i=0; i<m; i++) {
33914dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
33924dcd73b1SHong Zhang     Ii   = i + rstart;
339310c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
33944dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
33954dcd73b1SHong Zhang   }
3396e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
339710c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
339810c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
33994dcd73b1SHong Zhang   PetscFunctionReturn(0);
34004dcd73b1SHong Zhang }
3401