xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 3c896bc68a61f223153898d3519cb20f6ec74d1b)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2587828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
26a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
27a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
28a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
29a30f8f8cSSatish Balay    into the single precision data structures.
30a30f8f8cSSatish Balay */
31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
37a30f8f8cSSatish Balay #else
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
43a30f8f8cSSatish Balay #endif
44a30f8f8cSSatish Balay 
45a30f8f8cSSatish Balay EXTERN_C_BEGIN
464a2ae208SSatish Balay #undef __FUNCT__
474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
49a30f8f8cSSatish Balay {
50f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
51dfbe8321SBarry Smith   PetscErrorCode ierr;
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay   PetscFunctionBegin;
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
56a30f8f8cSSatish Balay   PetscFunctionReturn(0);
57a30f8f8cSSatish Balay }
58a30f8f8cSSatish Balay EXTERN_C_END
59a30f8f8cSSatish Balay 
60a30f8f8cSSatish Balay EXTERN_C_BEGIN
614a2ae208SSatish Balay #undef __FUNCT__
624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
64a30f8f8cSSatish Balay {
65f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
66dfbe8321SBarry Smith   PetscErrorCode ierr;
67a30f8f8cSSatish Balay 
68a30f8f8cSSatish Balay   PetscFunctionBegin;
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
71a30f8f8cSSatish Balay   PetscFunctionReturn(0);
72a30f8f8cSSatish Balay }
73a30f8f8cSSatish Balay EXTERN_C_END
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay 
76a30f8f8cSSatish Balay #define CHUNKSIZE  10
77a30f8f8cSSatish Balay 
78a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
79a30f8f8cSSatish Balay { \
80a30f8f8cSSatish Balay  \
81a30f8f8cSSatish Balay     brow = row/bs;  \
82a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
83a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
84a30f8f8cSSatish Balay       bcol = col/bs; \
85a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
86a30f8f8cSSatish Balay       low = 0; high = nrow; \
87a30f8f8cSSatish Balay       while (high-low > 3) { \
88a30f8f8cSSatish Balay         t = (low+high)/2; \
89a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
90a30f8f8cSSatish Balay         else              low  = t; \
91a30f8f8cSSatish Balay       } \
92a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
93a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
94a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
95a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
96a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
97a30f8f8cSSatish Balay           else                    *bap  = value;  \
98a30f8f8cSSatish Balay           goto a_noinsert; \
99a30f8f8cSSatish Balay         } \
100a30f8f8cSSatish Balay       } \
101a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
102085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
103ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \
104a30f8f8cSSatish Balay       N = nrow++ - 1;  \
105a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
106a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
107a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
108a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
109a30f8f8cSSatish Balay       } \
110a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
111a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
112a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
113a30f8f8cSSatish Balay       a_noinsert:; \
114a30f8f8cSSatish Balay     ailen[brow] = nrow; \
115a30f8f8cSSatish Balay }
116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
117a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
118a30f8f8cSSatish Balay { \
119a30f8f8cSSatish Balay     brow = row/bs;  \
120a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
121a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
122a30f8f8cSSatish Balay       bcol = col/bs; \
123a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
124a30f8f8cSSatish Balay       low = 0; high = nrow; \
125a30f8f8cSSatish Balay       while (high-low > 3) { \
126a30f8f8cSSatish Balay         t = (low+high)/2; \
127a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
128a30f8f8cSSatish Balay         else              low  = t; \
129a30f8f8cSSatish Balay       } \
130a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
131a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
132a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
133a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
134a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
135a30f8f8cSSatish Balay           else                    *bap  = value;  \
136a30f8f8cSSatish Balay           goto b_noinsert; \
137a30f8f8cSSatish Balay         } \
138a30f8f8cSSatish Balay       } \
139a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
140085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
141ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \
142a30f8f8cSSatish Balay       N = nrow++ - 1;  \
143a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
144a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
145a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
146a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
147a30f8f8cSSatish Balay       } \
148a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
149a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
150a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
151a30f8f8cSSatish Balay       b_noinsert:; \
152a30f8f8cSSatish Balay     bilen[brow] = nrow; \
153a30f8f8cSSatish Balay }
154a30f8f8cSSatish Balay #endif
155a30f8f8cSSatish Balay 
156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1574a2ae208SSatish Balay #undef __FUNCT__
1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
160a30f8f8cSSatish Balay {
161a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
162dfbe8321SBarry Smith   PetscErrorCode ierr;
1631302d50aSBarry Smith   PetscInt       i,N = m*n;
164a30f8f8cSSatish Balay   MatScalar      *vsingle;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
167a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
168a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
16982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
170a30f8f8cSSatish Balay     b->setvalueslen  = N;
171a30f8f8cSSatish Balay   }
172a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
173a30f8f8cSSatish Balay 
174a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
175a30f8f8cSSatish Balay     vsingle[i] = v[i];
176a30f8f8cSSatish Balay   }
177a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
178a30f8f8cSSatish Balay   PetscFunctionReturn(0);
179a30f8f8cSSatish Balay }
180a30f8f8cSSatish Balay 
1814a2ae208SSatish Balay #undef __FUNCT__
1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
184a30f8f8cSSatish Balay {
185a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
186dfbe8321SBarry Smith   PetscErrorCode ierr;
1871302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
188a30f8f8cSSatish Balay   MatScalar      *vsingle;
189a30f8f8cSSatish Balay 
190a30f8f8cSSatish Balay   PetscFunctionBegin;
191a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
192a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
19382502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
194a30f8f8cSSatish Balay     b->setvalueslen  = N;
195a30f8f8cSSatish Balay   }
196a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
197a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
198a30f8f8cSSatish Balay     vsingle[i] = v[i];
199a30f8f8cSSatish Balay   }
200a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
201a30f8f8cSSatish Balay   PetscFunctionReturn(0);
202a30f8f8cSSatish Balay }
203a30f8f8cSSatish Balay #endif
204a30f8f8cSSatish Balay 
205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
206a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
207a30f8f8cSSatish Balay */
2084a2ae208SSatish Balay #undef __FUNCT__
209e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
211a30f8f8cSSatish Balay {
212a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
213a30f8f8cSSatish Balay   MatScalar      value;
214b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
215dfbe8321SBarry Smith   PetscErrorCode ierr;
2161302d50aSBarry Smith   PetscInt       i,j,row,col;
2171302d50aSBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
2181302d50aSBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
219521d7252SBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=mat->bs;
220a30f8f8cSSatish Balay 
221a30f8f8cSSatish Balay   /* Some Variables required in the macro */
222a30f8f8cSSatish Balay   Mat            A = baij->A;
223a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2241302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
225a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
226a30f8f8cSSatish Balay 
227a30f8f8cSSatish Balay   Mat            B = baij->B;
228a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2291302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
230a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
231a30f8f8cSSatish Balay 
2321302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2331302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
234a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
235a30f8f8cSSatish Balay 
236a30f8f8cSSatish Balay   /* for stash */
2371302d50aSBarry Smith   PetscInt      n_loc, *in_loc=0;
238f65c83cfSHong Zhang   MatScalar     *v_loc=0;
239a30f8f8cSSatish Balay 
240a30f8f8cSSatish Balay   PetscFunctionBegin;
241a30f8f8cSSatish Balay 
242a30f8f8cSSatish Balay   if(!baij->donotstash){
2431302d50aSBarry Smith     ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr);
24482502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
245a30f8f8cSSatish Balay   }
246a30f8f8cSSatish Balay 
247a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
248a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2492515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
25077431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
251a30f8f8cSSatish Balay #endif
252a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
253a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
254a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
255f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
256a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
257a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
258a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
259a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
260a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
261a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
262a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
263a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2642515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
26577431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
266a30f8f8cSSatish Balay #endif
267a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
268a30f8f8cSSatish Balay           if (mat->was_assembled) {
269a30f8f8cSSatish Balay             if (!baij->colmap) {
270653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
271a30f8f8cSSatish Balay             }
272a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
273a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
27471730473SSatish Balay             col  = col - 1;
275a30f8f8cSSatish Balay #else
27671730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
277a30f8f8cSSatish Balay #endif
278a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
279a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
280a30f8f8cSSatish Balay               col =  in[j];
281a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
282a30f8f8cSSatish Balay               B = baij->B;
283a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
284a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
285a30f8f8cSSatish Balay               ba=b->a;
28671730473SSatish Balay             } else col += in[j]%bs;
287a30f8f8cSSatish Balay           } else col = in[j];
288a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
289a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
290a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
291a30f8f8cSSatish Balay         }
292a30f8f8cSSatish Balay       }
293a30f8f8cSSatish Balay     } else {  /* off processor entry */
294a30f8f8cSSatish Balay       if (!baij->donotstash) {
295a30f8f8cSSatish Balay         n_loc = 0;
296a30f8f8cSSatish Balay         for (j=0; j<n; j++){
297f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
298a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
299a30f8f8cSSatish Balay           if (roworiented) {
300a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
301a30f8f8cSSatish Balay           } else {
302a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
303a30f8f8cSSatish Balay           }
304a30f8f8cSSatish Balay           n_loc++;
305a30f8f8cSSatish Balay         }
306a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
307a30f8f8cSSatish Balay       }
308a30f8f8cSSatish Balay     }
309a30f8f8cSSatish Balay   }
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   if(!baij->donotstash){
312a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
313a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
314a30f8f8cSSatish Balay   }
315a30f8f8cSSatish Balay   PetscFunctionReturn(0);
316a30f8f8cSSatish Balay }
317a30f8f8cSSatish Balay 
3184a2ae208SSatish Balay #undef __FUNCT__
319e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3201302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
321a30f8f8cSSatish Balay {
3220880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
323f15d580aSBarry Smith   const MatScalar *value;
324f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3250880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
326dfbe8321SBarry Smith   PetscErrorCode  ierr;
3271302d50aSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
3281302d50aSBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
329521d7252SBarry Smith   PetscInt        cend=baij->cend,bs=mat->bs,bs2=baij->bs2;
3300880e062SHong Zhang 
331a30f8f8cSSatish Balay   PetscFunctionBegin;
3320880e062SHong Zhang   if(!barray) {
3330880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3340880e062SHong Zhang     baij->barray = barray;
3350880e062SHong Zhang   }
3360880e062SHong Zhang 
3370880e062SHong Zhang   if (roworiented) {
3380880e062SHong Zhang     stepval = (n-1)*bs;
3390880e062SHong Zhang   } else {
3400880e062SHong Zhang     stepval = (m-1)*bs;
3410880e062SHong Zhang   }
3420880e062SHong Zhang   for (i=0; i<m; i++) {
3430880e062SHong Zhang     if (im[i] < 0) continue;
3442515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
34577431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3460880e062SHong Zhang #endif
3470880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3480880e062SHong Zhang       row = im[i] - rstart;
3490880e062SHong Zhang       for (j=0; j<n; j++) {
3500880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3510880e062SHong Zhang         if ((roworiented) && (n == 1)) {
352f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3530880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
354f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3550880e062SHong Zhang         } else { /* Here a copy is required */
3560880e062SHong Zhang           if (roworiented) {
3570880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3580880e062SHong Zhang           } else {
3590880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3600880e062SHong Zhang           }
3610880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3620880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3630880e062SHong Zhang               *barray++  = *value++;
3640880e062SHong Zhang             }
3650880e062SHong Zhang           }
3660880e062SHong Zhang           barray -=bs2;
3670880e062SHong Zhang         }
3680880e062SHong Zhang 
3690880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3700880e062SHong Zhang           col  = in[j] - cstart;
3710880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3720880e062SHong Zhang         }
3730880e062SHong Zhang         else if (in[j] < 0) continue;
3742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
37577431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3760880e062SHong Zhang #endif
3770880e062SHong Zhang         else {
3780880e062SHong Zhang           if (mat->was_assembled) {
3790880e062SHong Zhang             if (!baij->colmap) {
380653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3810880e062SHong Zhang             }
3820880e062SHong Zhang 
3832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3840880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3851302d50aSBarry Smith             { PetscInt data;
3860880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3870880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3880880e062SHong Zhang             }
3890880e062SHong Zhang #else
3900880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3910880e062SHong Zhang #endif
3920880e062SHong Zhang #endif
3930880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3940880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3950880e062SHong Zhang             col  = (col - 1)/bs;
3960880e062SHong Zhang #else
3970880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3980880e062SHong Zhang #endif
3990880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4000880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4010880e062SHong Zhang               col =  in[j];
4020880e062SHong Zhang             }
4030880e062SHong Zhang           }
4040880e062SHong Zhang           else col = in[j];
405e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4060880e062SHong Zhang         }
4070880e062SHong Zhang       }
4080880e062SHong Zhang     } else {
4090880e062SHong Zhang       if (!baij->donotstash) {
4100880e062SHong Zhang         if (roworiented) {
4110880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4120880e062SHong Zhang         } else {
4130880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4140880e062SHong Zhang         }
4150880e062SHong Zhang       }
4160880e062SHong Zhang     }
4170880e062SHong Zhang   }
4180880e062SHong Zhang   PetscFunctionReturn(0);
419a30f8f8cSSatish Balay }
420a30f8f8cSSatish Balay 
4214a2ae208SSatish Balay #undef __FUNCT__
4224a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4231302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
424a30f8f8cSSatish Balay {
425f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4266849ba73SBarry Smith   PetscErrorCode ierr;
427521d7252SBarry Smith   PetscInt       bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
4281302d50aSBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
429a30f8f8cSSatish Balay 
430a30f8f8cSSatish Balay   PetscFunctionBegin;
431a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
43277431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
43377431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
434a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
435a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
436a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
43777431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
43877431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
439a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
440a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
441c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
442a30f8f8cSSatish Balay         } else {
443a30f8f8cSSatish Balay           if (!baij->colmap) {
444653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
445a30f8f8cSSatish Balay           }
446a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
447a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
448a30f8f8cSSatish Balay           data --;
449a30f8f8cSSatish Balay #else
450a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
451a30f8f8cSSatish Balay #endif
452a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
453a30f8f8cSSatish Balay           else {
454a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
455e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
456a30f8f8cSSatish Balay           }
457a30f8f8cSSatish Balay         }
458a30f8f8cSSatish Balay       }
459a30f8f8cSSatish Balay     } else {
46029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
461a30f8f8cSSatish Balay     }
462a30f8f8cSSatish Balay   }
463a30f8f8cSSatish Balay  PetscFunctionReturn(0);
464a30f8f8cSSatish Balay }
465a30f8f8cSSatish Balay 
4664a2ae208SSatish Balay #undef __FUNCT__
4674a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
468dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
469a30f8f8cSSatish Balay {
470a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
471dfbe8321SBarry Smith   PetscErrorCode ierr;
472a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
473a30f8f8cSSatish Balay 
474a30f8f8cSSatish Balay   PetscFunctionBegin;
475a30f8f8cSSatish Balay   if (baij->size == 1) {
476a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
477a30f8f8cSSatish Balay   } else {
478a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
479f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
480a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
481a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
482a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
483a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
484d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
485a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
486a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4870b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4880b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4890b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4900b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
4910b8dc8d2SHong Zhang       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstart,nz;
4920b8dc8d2SHong Zhang       PetscInt     brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs;
4930b8dc8d2SHong Zhang       MatScalar    *v;
4940b8dc8d2SHong Zhang 
4950b8dc8d2SHong Zhang       ierr  = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
4960b8dc8d2SHong Zhang       rsum2 = rsum + mat->N;
4970b8dc8d2SHong Zhang       ierr  = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr);
4980b8dc8d2SHong Zhang       /* Amat */
4990b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5000b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5010b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5020b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5030b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5040b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5050b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5060b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5070b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5080b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5090b8dc8d2SHong Zhang               /* non-diagonal block */
5100b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5110b8dc8d2SHong Zhang             }
5120b8dc8d2SHong Zhang           }
5130b8dc8d2SHong Zhang         }
5140b8dc8d2SHong Zhang       }
5150b8dc8d2SHong Zhang       /* Bmat */
5160b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5170b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5180b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5190b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5200b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5210b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5220b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5230b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5240b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5250b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5260b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5270b8dc8d2SHong Zhang             }
5280b8dc8d2SHong Zhang           }
5290b8dc8d2SHong Zhang         }
5300b8dc8d2SHong Zhang       }
5310b8dc8d2SHong Zhang       ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5320b8dc8d2SHong Zhang       *norm = 0.0;
5330b8dc8d2SHong Zhang       for (col=0; col<mat->N; col++) {
5340b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5350b8dc8d2SHong Zhang       }
5360b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
537a30f8f8cSSatish Balay     } else {
53829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
539a30f8f8cSSatish Balay     }
540a30f8f8cSSatish Balay   }
541a30f8f8cSSatish Balay   PetscFunctionReturn(0);
542a30f8f8cSSatish Balay }
543a30f8f8cSSatish Balay 
5444a2ae208SSatish Balay #undef __FUNCT__
5454a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
546dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
547a30f8f8cSSatish Balay {
548a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
549dfbe8321SBarry Smith   PetscErrorCode ierr;
5501302d50aSBarry Smith   PetscInt       nstash,reallocs;
551a30f8f8cSSatish Balay   InsertMode     addv;
552a30f8f8cSSatish Balay 
553a30f8f8cSSatish Balay   PetscFunctionBegin;
554a30f8f8cSSatish Balay   if (baij->donotstash) {
555a30f8f8cSSatish Balay     PetscFunctionReturn(0);
556a30f8f8cSSatish Balay   }
557a30f8f8cSSatish Balay 
558a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
559a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
560a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
562a30f8f8cSSatish Balay   }
563a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
564a30f8f8cSSatish Balay 
565a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
566a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
56863ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
569a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
57063ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
571a30f8f8cSSatish Balay   PetscFunctionReturn(0);
572a30f8f8cSSatish Balay }
573a30f8f8cSSatish Balay 
5744a2ae208SSatish Balay #undef __FUNCT__
5754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
576dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
577a30f8f8cSSatish Balay {
578a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
579a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
580a30f8f8cSSatish Balay   Mat_SeqBAIJ    *b=(Mat_SeqBAIJ*)baij->B->data;
5816849ba73SBarry Smith   PetscErrorCode ierr;
58213f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5831302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
58413f74950SBarry Smith   PetscMPIInt    n;
585a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
586a30f8f8cSSatish Balay   MatScalar      *val;
587a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
588a30f8f8cSSatish Balay 
589a30f8f8cSSatish Balay   PetscFunctionBegin;
590a30f8f8cSSatish Balay 
591a30f8f8cSSatish Balay   if (!baij->donotstash) {
592a30f8f8cSSatish Balay     while (1) {
593a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
594a30f8f8cSSatish Balay       if (!flg) break;
595a30f8f8cSSatish Balay 
596a30f8f8cSSatish Balay       for (i=0; i<n;) {
597a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
598a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
599a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
600a30f8f8cSSatish Balay         else       ncols = n-i;
601a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
602a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
603a30f8f8cSSatish Balay         i = j;
604a30f8f8cSSatish Balay       }
605a30f8f8cSSatish Balay     }
606a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
607a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
608a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
609a30f8f8cSSatish Balay        restore the original flags */
610a30f8f8cSSatish Balay     r1 = baij->roworiented;
611a30f8f8cSSatish Balay     r2 = a->roworiented;
612a30f8f8cSSatish Balay     r3 = b->roworiented;
613a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
614a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
615a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
616a30f8f8cSSatish Balay     while (1) {
617a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
618a30f8f8cSSatish Balay       if (!flg) break;
619a30f8f8cSSatish Balay 
620a30f8f8cSSatish Balay       for (i=0; i<n;) {
621a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
622a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
623a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
624a30f8f8cSSatish Balay         else       ncols = n-i;
625a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
626a30f8f8cSSatish Balay         i = j;
627a30f8f8cSSatish Balay       }
628a30f8f8cSSatish Balay     }
629a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
630a30f8f8cSSatish Balay     baij->roworiented = r1;
631a30f8f8cSSatish Balay     a->roworiented    = r2;
632a30f8f8cSSatish Balay     b->roworiented    = r3;
633a30f8f8cSSatish Balay   }
634a30f8f8cSSatish Balay 
635a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
636a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
637a30f8f8cSSatish Balay 
638a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
639a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
640a30f8f8cSSatish Balay   /*
641a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
642a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
643a30f8f8cSSatish Balay   */
644a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
645a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
646a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
647c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
648a30f8f8cSSatish Balay     }
649a30f8f8cSSatish Balay   }
650a30f8f8cSSatish Balay 
651a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
65240781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
653a30f8f8cSSatish Balay   }
6544eb6d288SHong Zhang   b->compressedrow.use = PETSC_TRUE;
655a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
656a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   if (baij->rowvalues) {
659a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
660a30f8f8cSSatish Balay     baij->rowvalues = 0;
661a30f8f8cSSatish Balay   }
6625222a1afSHong Zhang 
663a30f8f8cSSatish Balay   PetscFunctionReturn(0);
664a30f8f8cSSatish Balay }
665a30f8f8cSSatish Balay 
6664a2ae208SSatish Balay #undef __FUNCT__
6674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6686849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
669a30f8f8cSSatish Balay {
670a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
671dfbe8321SBarry Smith   PetscErrorCode    ierr;
672521d7252SBarry Smith   PetscInt          bs = mat->bs;
6731302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
67432077d6dSBarry Smith   PetscTruth        iascii,isdraw;
675b0a32e0cSBarry Smith   PetscViewer       sviewer;
676f3ef73ceSBarry Smith   PetscViewerFormat format;
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay   PetscFunctionBegin;
67932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
680fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68132077d6dSBarry Smith   if (iascii) {
682b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
683456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
684a30f8f8cSSatish Balay       MatInfo info;
685a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
686a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
68777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
68877431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
689521d7252SBarry Smith               mat->bs,(PetscInt)info.memory);CHKERRQ(ierr);
690a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
692a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
694b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
695a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
696a30f8f8cSSatish Balay       PetscFunctionReturn(0);
697fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
69877431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
699a30f8f8cSSatish Balay       PetscFunctionReturn(0);
700c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
701c1490034SHong Zhang       PetscFunctionReturn(0);
702a30f8f8cSSatish Balay     }
703a30f8f8cSSatish Balay   }
704a30f8f8cSSatish Balay 
705a30f8f8cSSatish Balay   if (isdraw) {
706b0a32e0cSBarry Smith     PetscDraw       draw;
707a30f8f8cSSatish Balay     PetscTruth isnull;
708b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
709b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
710a30f8f8cSSatish Balay   }
711a30f8f8cSSatish Balay 
712a30f8f8cSSatish Balay   if (size == 1) {
713e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
714a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay   } else {
716a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
717a30f8f8cSSatish Balay     Mat         A;
71865d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
71965d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
7201302d50aSBarry Smith     PetscInt         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
721a30f8f8cSSatish Balay     MatScalar   *a;
722a30f8f8cSSatish Balay 
723f204ca49SKris Buschelman     /* Should this be the same type as mat? */
724f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
725a30f8f8cSSatish Balay     if (!rank) {
726f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
727a30f8f8cSSatish Balay     } else {
728f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
729a30f8f8cSSatish Balay     }
730f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
731521d7252SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
73252e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
733a30f8f8cSSatish Balay 
734a30f8f8cSSatish Balay     /* copy over the A part */
73565d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
736a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7371302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
738a30f8f8cSSatish Balay 
739a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
740a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
741a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
742a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
743a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
744a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
745a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
746a30f8f8cSSatish Balay           col++; a += bs;
747a30f8f8cSSatish Balay         }
748a30f8f8cSSatish Balay       }
749a30f8f8cSSatish Balay     }
750a30f8f8cSSatish Balay     /* copy over the B part */
75165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
75265d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
753a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
754a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
755a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
756a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
757a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
758a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
759a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
760a30f8f8cSSatish Balay           col++; a += bs;
761a30f8f8cSSatish Balay         }
762a30f8f8cSSatish Balay       }
763a30f8f8cSSatish Balay     }
764a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
765a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
766a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
767a30f8f8cSSatish Balay     /*
768a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
769b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
770a30f8f8cSSatish Balay     */
771b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
77265d70643SHong Zhang     if (!rank) {
773e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
774a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
775a30f8f8cSSatish Balay     }
776b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
777a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
778a30f8f8cSSatish Balay   }
779a30f8f8cSSatish Balay   PetscFunctionReturn(0);
780a30f8f8cSSatish Balay }
781a30f8f8cSSatish Balay 
7824a2ae208SSatish Balay #undef __FUNCT__
7834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
784dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
785a30f8f8cSSatish Balay {
786dfbe8321SBarry Smith   PetscErrorCode ierr;
78732077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
788a30f8f8cSSatish Balay 
789a30f8f8cSSatish Balay   PetscFunctionBegin;
79032077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
791fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
792b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
793fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
79432077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
795a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
796a30f8f8cSSatish Balay   } else {
7971302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
798a30f8f8cSSatish Balay   }
799a30f8f8cSSatish Balay   PetscFunctionReturn(0);
800a30f8f8cSSatish Balay }
801a30f8f8cSSatish Balay 
8024a2ae208SSatish Balay #undef __FUNCT__
8034a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
804dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
805a30f8f8cSSatish Balay {
806a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
807dfbe8321SBarry Smith   PetscErrorCode ierr;
808a30f8f8cSSatish Balay 
809a30f8f8cSSatish Balay   PetscFunctionBegin;
810a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
81177431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
812a30f8f8cSSatish Balay #endif
813a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
814a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
815a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
816a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
817a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
818a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
819a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
820a30f8f8cSSatish Balay #else
821a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
822a30f8f8cSSatish Balay #endif
823a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
824a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
825a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
82640781036SHong Zhang   if (baij->slvec0) {
82740781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
82840781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
82940781036SHong Zhang   }
83040781036SHong Zhang   if (baij->slvec1) {
83140781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
83240781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
83340781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
83440781036SHong Zhang   }
83540781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
836a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
837a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
838a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
839a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
840a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
841a30f8f8cSSatish Balay #endif
842a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
843901853e0SKris Buschelman 
844901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
845901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
846901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
847901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
848a30f8f8cSSatish Balay   PetscFunctionReturn(0);
849a30f8f8cSSatish Balay }
850a30f8f8cSSatish Balay 
8514a2ae208SSatish Balay #undef __FUNCT__
852a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
853dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
854a9d4b620SHong Zhang {
855a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
856dfbe8321SBarry Smith   PetscErrorCode ierr;
857521d7252SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->bs;
858a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
859a9d4b620SHong Zhang 
860a9d4b620SHong Zhang   PetscFunctionBegin;
861a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
862a9d4b620SHong Zhang   if (nt != A->n) {
863a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
864a9d4b620SHong Zhang   }
865a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
866a9d4b620SHong Zhang   if (nt != A->m) {
867a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
868a9d4b620SHong Zhang   }
869a9d4b620SHong Zhang 
870a9d4b620SHong Zhang   /* diagonal part */
871a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8722dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
873a9d4b620SHong Zhang 
874a9d4b620SHong Zhang   /* subdiagonal part */
875a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
876a9d4b620SHong Zhang 
877a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8781ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8791ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
880a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
8811ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
882a9d4b620SHong Zhang 
883a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
8841ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
885a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
886a9d4b620SHong Zhang 
887a9d4b620SHong Zhang   /* supperdiagonal part */
888a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
889a9d4b620SHong Zhang 
890a9d4b620SHong Zhang   PetscFunctionReturn(0);
891a9d4b620SHong Zhang }
892a9d4b620SHong Zhang 
893a9d4b620SHong Zhang #undef __FUNCT__
89440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
895dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
896a30f8f8cSSatish Balay {
897a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
898dfbe8321SBarry Smith   PetscErrorCode ierr;
8991302d50aSBarry Smith   PetscInt       nt;
900a30f8f8cSSatish Balay 
901a30f8f8cSSatish Balay   PetscFunctionBegin;
902a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
903b5df2d14SHong Zhang   if (nt != A->n) {
90429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
905a30f8f8cSSatish Balay   }
906a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
907b5df2d14SHong Zhang   if (nt != A->m) {
90829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
909a30f8f8cSSatish Balay   }
91065d70643SHong Zhang 
911b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
912b941877fSHong Zhang   /* do diagonal part */
913b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
914b941877fSHong Zhang   /* do supperdiagonal part */
915b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
916b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
917b941877fSHong Zhang   /* do subdiagonal part */
918b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
919b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
920b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
92165d70643SHong Zhang 
922a30f8f8cSSatish Balay   PetscFunctionReturn(0);
923a30f8f8cSSatish Balay }
924a30f8f8cSSatish Balay 
9254a2ae208SSatish Balay #undef __FUNCT__
9264a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
927dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
928a30f8f8cSSatish Balay {
929de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
930dfbe8321SBarry Smith   PetscErrorCode ierr;
931521d7252SBarry Smith   PetscInt       mbs=a->mbs,bs=A->bs;
932a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
933a9d4b620SHong Zhang 
934a9d4b620SHong Zhang   PetscFunctionBegin;
935a9d4b620SHong Zhang   /*
93656faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
93756faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
938a9d4b620SHong Zhang   */
939a9d4b620SHong Zhang   /* diagonal part */
940a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9412dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
942a9d4b620SHong Zhang 
943a9d4b620SHong Zhang   /* subdiagonal part */
944a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
945a9d4b620SHong Zhang 
946a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9471ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9481ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
949a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9501ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
951a9d4b620SHong Zhang 
952a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9531ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
954a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
955a9d4b620SHong Zhang 
956a9d4b620SHong Zhang   /* supperdiagonal part */
957a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
958a9d4b620SHong Zhang 
959a9d4b620SHong Zhang   PetscFunctionReturn(0);
960a9d4b620SHong Zhang }
961a9d4b620SHong Zhang 
962a9d4b620SHong Zhang #undef __FUNCT__
963a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
964dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
965a9d4b620SHong Zhang {
966a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
967dfbe8321SBarry Smith   PetscErrorCode ierr;
968a30f8f8cSSatish Balay 
969a30f8f8cSSatish Balay   PetscFunctionBegin;
970b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
971b941877fSHong Zhang   /* do diagonal part */
972b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
973b941877fSHong Zhang   /* do supperdiagonal part */
974b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
975de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
976de8b6608SHong Zhang 
977b941877fSHong Zhang   /* do subdiagonal part */
978a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
979a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
980a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
981aa482183SHong Zhang 
982a30f8f8cSSatish Balay   PetscFunctionReturn(0);
983a30f8f8cSSatish Balay }
984a30f8f8cSSatish Balay 
985a30f8f8cSSatish Balay /*
986a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
987a30f8f8cSSatish Balay    diagonal block
988a30f8f8cSSatish Balay */
9894a2ae208SSatish Balay #undef __FUNCT__
9904a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
991dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
992a30f8f8cSSatish Balay {
993a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
994dfbe8321SBarry Smith   PetscErrorCode ierr;
995a30f8f8cSSatish Balay 
996a30f8f8cSSatish Balay   PetscFunctionBegin;
99729bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
998a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
999a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1000a30f8f8cSSatish Balay }
1001a30f8f8cSSatish Balay 
10024a2ae208SSatish Balay #undef __FUNCT__
10034a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1004f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1005a30f8f8cSSatish Balay {
1006a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1007dfbe8321SBarry Smith   PetscErrorCode ierr;
1008a30f8f8cSSatish Balay 
1009a30f8f8cSSatish Balay   PetscFunctionBegin;
1010f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1011f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1012a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1013a30f8f8cSSatish Balay }
1014a30f8f8cSSatish Balay 
10154a2ae208SSatish Balay #undef __FUNCT__
10164a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10171302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1018a30f8f8cSSatish Balay {
1019a30f8f8cSSatish Balay   PetscFunctionBegin;
1020d23016edSBarry Smith   if (matin) SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format");
1021a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1022a30f8f8cSSatish Balay }
1023a30f8f8cSSatish Balay 
10244a2ae208SSatish Balay #undef __FUNCT__
10254a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10261302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1027a30f8f8cSSatish Balay {
1028a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1029a30f8f8cSSatish Balay 
1030a30f8f8cSSatish Balay   PetscFunctionBegin;
1031abc0a331SBarry Smith   if (!baij->getrowactive) {
1032abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1033a30f8f8cSSatish Balay   }
1034a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1035a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1036a30f8f8cSSatish Balay }
1037a30f8f8cSSatish Balay 
10384a2ae208SSatish Balay #undef __FUNCT__
103999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
104099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
104199cafbc1SBarry Smith {
104299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
104399cafbc1SBarry Smith   PetscErrorCode ierr;
104499cafbc1SBarry Smith 
104599cafbc1SBarry Smith   PetscFunctionBegin;
104699cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
104799cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
104899cafbc1SBarry Smith   PetscFunctionReturn(0);
104999cafbc1SBarry Smith }
105099cafbc1SBarry Smith 
105199cafbc1SBarry Smith #undef __FUNCT__
105299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
105399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
105499cafbc1SBarry Smith {
105599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
105699cafbc1SBarry Smith   PetscErrorCode ierr;
105799cafbc1SBarry Smith 
105899cafbc1SBarry Smith   PetscFunctionBegin;
105999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
106099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
106199cafbc1SBarry Smith   PetscFunctionReturn(0);
106299cafbc1SBarry Smith }
106399cafbc1SBarry Smith 
106499cafbc1SBarry Smith #undef __FUNCT__
10654a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1066dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1067a30f8f8cSSatish Balay {
1068a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1069dfbe8321SBarry Smith   PetscErrorCode ierr;
1070a30f8f8cSSatish Balay 
1071a30f8f8cSSatish Balay   PetscFunctionBegin;
1072a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1073a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1074a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1075a30f8f8cSSatish Balay }
1076a30f8f8cSSatish Balay 
10774a2ae208SSatish Balay #undef __FUNCT__
10784a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1079dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1080a30f8f8cSSatish Balay {
1081a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1082a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1083dfbe8321SBarry Smith   PetscErrorCode ierr;
1084a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1085a30f8f8cSSatish Balay 
1086a30f8f8cSSatish Balay   PetscFunctionBegin;
1087521d7252SBarry Smith   info->block_size     = (PetscReal)matin->bs;
1088a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1089a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1090a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1091a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1092a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1093a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1094a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1095a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1096a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1097a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1098a30f8f8cSSatish Balay     info->memory       = isend[3];
1099a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1100a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1101d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1102a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1103a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1104a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1105a30f8f8cSSatish Balay     info->memory       = irecv[3];
1106a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1107a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1108d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1109a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1110a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1111a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1112a30f8f8cSSatish Balay     info->memory       = irecv[3];
1113a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1114a30f8f8cSSatish Balay   } else {
111577431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1116a30f8f8cSSatish Balay   }
1117f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1118f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1119f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1120f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1121a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1122a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1123a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1124a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1125a30f8f8cSSatish Balay }
1126a30f8f8cSSatish Balay 
11274a2ae208SSatish Balay #undef __FUNCT__
11284a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1129dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1130a30f8f8cSSatish Balay {
1131a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1132dfbe8321SBarry Smith   PetscErrorCode ierr;
1133a30f8f8cSSatish Balay 
1134a30f8f8cSSatish Balay   PetscFunctionBegin;
1135e98b92d7SKris Buschelman   switch (op) {
1136e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1137e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1138e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1139e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1140e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1141e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1142e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1143a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1144a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1145e98b92d7SKris Buschelman     break;
1146e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1147a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1148a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1149a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1150e98b92d7SKris Buschelman     break;
1151e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1152e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1153e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
115463ba0a88SBarry Smith     ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr);
1155e98b92d7SKris Buschelman     break;
1156e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1157a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1158a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1159a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1160e98b92d7SKris Buschelman     break;
1161e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1162a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1163e98b92d7SKris Buschelman     break;
1164e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
116529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1166e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1167a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1168e98b92d7SKris Buschelman     break;
11699a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
11709a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
11719a4540c5SBarry Smith   case MAT_HERMITIAN:
11729a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
117377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
117477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
11759a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
11769a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
11779a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
117877e54ba9SKris Buschelman     break;
1179e98b92d7SKris Buschelman   default:
118029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1181a30f8f8cSSatish Balay   }
1182a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1183a30f8f8cSSatish Balay }
1184a30f8f8cSSatish Balay 
11854a2ae208SSatish Balay #undef __FUNCT__
11868115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1187dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1188a30f8f8cSSatish Balay {
1189dfbe8321SBarry Smith   PetscErrorCode ierr;
1190a30f8f8cSSatish Balay   PetscFunctionBegin;
1191999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
11928115998fSBarry Smith   PetscFunctionReturn(0);
1193a30f8f8cSSatish Balay }
1194a30f8f8cSSatish Balay 
11954a2ae208SSatish Balay #undef __FUNCT__
11964a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1197dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1198a30f8f8cSSatish Balay {
1199a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1200a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1201dfbe8321SBarry Smith   PetscErrorCode ierr;
12025e90f9d9SHong Zhang   PetscInt       nv,m,n;
1203b3bf805bSHong Zhang   PetscTruth     flg;
1204a30f8f8cSSatish Balay 
1205a30f8f8cSSatish Balay   PetscFunctionBegin;
1206a30f8f8cSSatish Balay   if (ll != rr){
1207b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1208b3bf805bSHong Zhang     if (!flg)
120929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1210a30f8f8cSSatish Balay   }
1211b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1212b3bf805bSHong Zhang 
12135e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12145e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1215b3bf805bSHong Zhang 
12165e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12175e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12185e90f9d9SHong Zhang 
1219a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
12205e90f9d9SHong Zhang 
12215e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1222a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12235e90f9d9SHong Zhang 
12245e90f9d9SHong Zhang   /* scale the diagonal part */
1225a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1226a30f8f8cSSatish Balay 
12275e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1228a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1229a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1230a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1231a30f8f8cSSatish Balay }
1232a30f8f8cSSatish Balay 
12334a2ae208SSatish Balay #undef __FUNCT__
12344a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1235dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1236a30f8f8cSSatish Balay {
1237a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1238a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
12391302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1240dfbe8321SBarry Smith   PetscErrorCode    ierr;
1241a30f8f8cSSatish Balay 
1242a30f8f8cSSatish Balay   PetscFunctionBegin;
1243a30f8f8cSSatish Balay   if (!a->rank) {
1244a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1245a30f8f8cSSatish Balay   }
12461302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1247a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1248a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1249a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1250a30f8f8cSSatish Balay }
1251a30f8f8cSSatish Balay 
12524a2ae208SSatish Balay #undef __FUNCT__
12534a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1254dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1255a30f8f8cSSatish Balay {
1256f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1257dfbe8321SBarry Smith   PetscErrorCode ierr;
1258a30f8f8cSSatish Balay 
1259a30f8f8cSSatish Balay   PetscFunctionBegin;
1260a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1261a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1262a30f8f8cSSatish Balay }
1263a30f8f8cSSatish Balay 
12646849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1265a30f8f8cSSatish Balay 
12664a2ae208SSatish Balay #undef __FUNCT__
12674a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1268dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1269a30f8f8cSSatish Balay {
1270a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1271a30f8f8cSSatish Balay   Mat            a,b,c,d;
1272a30f8f8cSSatish Balay   PetscTruth     flg;
1273dfbe8321SBarry Smith   PetscErrorCode ierr;
1274a30f8f8cSSatish Balay 
1275a30f8f8cSSatish Balay   PetscFunctionBegin;
1276a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1277a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1278a30f8f8cSSatish Balay 
1279a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1280abc0a331SBarry Smith   if (flg) {
1281a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1282a30f8f8cSSatish Balay   }
1283a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1284a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1285a30f8f8cSSatish Balay }
1286a30f8f8cSSatish Balay 
12874a2ae208SSatish Balay #undef __FUNCT__
1288*3c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
1289*3c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
1290*3c896bc6SHong Zhang {
1291*3c896bc6SHong Zhang   PetscErrorCode ierr;
1292*3c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
1293*3c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
1294*3c896bc6SHong Zhang 
1295*3c896bc6SHong Zhang   PetscFunctionBegin;
1296*3c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
1297*3c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1298*3c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1299*3c896bc6SHong Zhang   } else {
1300*3c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
1301*3c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
1302*3c896bc6SHong Zhang   }
1303*3c896bc6SHong Zhang   PetscFunctionReturn(0);
1304*3c896bc6SHong Zhang }
1305*3c896bc6SHong Zhang 
1306*3c896bc6SHong Zhang #undef __FUNCT__
13074a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1308dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1309273d9f13SBarry Smith {
1310dfbe8321SBarry Smith   PetscErrorCode ierr;
1311273d9f13SBarry Smith 
1312273d9f13SBarry Smith   PetscFunctionBegin;
1313273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1314273d9f13SBarry Smith   PetscFunctionReturn(0);
1315273d9f13SBarry Smith }
1316a5e6ed63SBarry Smith 
13174fe895cdSHong Zhang #include "petscblaslapack.h"
13184fe895cdSHong Zhang #undef __FUNCT__
13194fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13204fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13214fe895cdSHong Zhang {
13224fe895cdSHong Zhang   PetscErrorCode ierr;
13234fe895cdSHong Zhang   PetscInt       i;
13244fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13254fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13264fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13274fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13284fe895cdSHong Zhang 
13294fe895cdSHong Zhang   PetscFunctionBegin;
13304fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13314fe895cdSHong Zhang     PetscScalar alpha = a;
13324fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13334fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13344fe895cdSHong Zhang     bnz = (PetscBLASInt)xa->nz;
13354fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13364fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13374fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13384fe895cdSHong Zhang     bnz = (PetscBLASInt)xb->nz;
13394fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13404fe895cdSHong Zhang   } else {
13414fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
13424fe895cdSHong Zhang   }
13434fe895cdSHong Zhang   PetscFunctionReturn(0);
13444fe895cdSHong Zhang }
13454fe895cdSHong Zhang 
1346a5e6ed63SBarry Smith #undef __FUNCT__
1347a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
13481302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1349a5e6ed63SBarry Smith {
13506849ba73SBarry Smith   PetscErrorCode ierr;
13511302d50aSBarry Smith   PetscInt       i;
1352a5e6ed63SBarry Smith   PetscTruth     flg;
1353a5e6ed63SBarry Smith 
13546849ba73SBarry Smith   PetscFunctionBegin;
1355a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1356a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1357a5e6ed63SBarry Smith     if (!flg) {
13581302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1359a5e6ed63SBarry Smith     }
1360a5e6ed63SBarry Smith   }
1361a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1362a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1363a5e6ed63SBarry Smith }
1364a5e6ed63SBarry Smith 
1365a5e6ed63SBarry Smith 
1366a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1367a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1368a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1369a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1370a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1371a9d4b620SHong Zhang        MatMult_MPISBAIJ,
137297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1373431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1374431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1375a30f8f8cSSatish Balay        0,
1376a30f8f8cSSatish Balay        0,
1377a30f8f8cSSatish Balay        0,
137897304618SKris Buschelman /*10*/ 0,
1379a30f8f8cSSatish Balay        0,
1380a30f8f8cSSatish Balay        0,
13812798e883SHong Zhang        MatRelax_MPISBAIJ,
1382a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
138397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1384a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1385a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1386a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1387a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
138897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1389a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1390a30f8f8cSSatish Balay        0,
1391a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1392a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1393dcf5cc72SBarry Smith /*25*/ 0,
1394a30f8f8cSSatish Balay        0,
1395a30f8f8cSSatish Balay        0,
1396a30f8f8cSSatish Balay        0,
1397a30f8f8cSSatish Balay        0,
139897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1399b5df2d14SHong Zhang        0,
1400a30f8f8cSSatish Balay        0,
1401a30f8f8cSSatish Balay        0,
1402a30f8f8cSSatish Balay        0,
140397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1404a30f8f8cSSatish Balay        0,
1405a30f8f8cSSatish Balay        0,
1406a30f8f8cSSatish Balay        0,
1407a30f8f8cSSatish Balay        0,
14084fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1409a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1410d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1411a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1412*3c896bc6SHong Zhang        MatCopy_MPISBAIJ,
141397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1414a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1415a30f8f8cSSatish Balay        0,
1416a30f8f8cSSatish Balay        0,
1417a30f8f8cSSatish Balay        0,
1418521d7252SBarry Smith /*50*/ 0,
1419a30f8f8cSSatish Balay        0,
1420a30f8f8cSSatish Balay        0,
1421a30f8f8cSSatish Balay        0,
1422a30f8f8cSSatish Balay        0,
142397304618SKris Buschelman /*55*/ 0,
1424a30f8f8cSSatish Balay        0,
1425a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1426a30f8f8cSSatish Balay        0,
1427a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
142897304618SKris Buschelman /*60*/ 0,
1429a30f8f8cSSatish Balay        0,
1430a30f8f8cSSatish Balay        0,
14318a124369SBarry Smith        MatGetPetscMaps_Petsc,
143224d5174aSHong Zhang        0,
143397304618SKris Buschelman /*65*/ 0,
143424d5174aSHong Zhang        0,
143524d5174aSHong Zhang        0,
143624d5174aSHong Zhang        0,
143724d5174aSHong Zhang        0,
143897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
143924d5174aSHong Zhang        0,
144097304618SKris Buschelman        0,
144197304618SKris Buschelman        0,
144297304618SKris Buschelman        0,
144397304618SKris Buschelman /*75*/ 0,
144497304618SKris Buschelman        0,
144597304618SKris Buschelman        0,
144697304618SKris Buschelman        0,
144797304618SKris Buschelman        0,
144897304618SKris Buschelman /*80*/ 0,
144997304618SKris Buschelman        0,
145097304618SKris Buschelman        0,
145197304618SKris Buschelman        0,
1452865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1453865e5f61SKris Buschelman /*85*/ 0,
1454865e5f61SKris Buschelman        0,
1455865e5f61SKris Buschelman        0,
1456865e5f61SKris Buschelman        0,
1457865e5f61SKris Buschelman        0,
1458865e5f61SKris Buschelman /*90*/ 0,
1459865e5f61SKris Buschelman        0,
1460865e5f61SKris Buschelman        0,
1461865e5f61SKris Buschelman        0,
1462865e5f61SKris Buschelman        0,
1463865e5f61SKris Buschelman /*95*/ 0,
1464865e5f61SKris Buschelman        0,
1465865e5f61SKris Buschelman        0,
146699cafbc1SBarry Smith        0,
146799cafbc1SBarry Smith        0,
146899cafbc1SBarry Smith /*100*/0,
146999cafbc1SBarry Smith        0,
147099cafbc1SBarry Smith        0,
147199cafbc1SBarry Smith        0,
147299cafbc1SBarry Smith        0,
147399cafbc1SBarry Smith /*105*/0,
147499cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
147599cafbc1SBarry Smith        MatImaginaryPart_MPISBAIJ
147699cafbc1SBarry Smith };
1477a30f8f8cSSatish Balay 
1478a30f8f8cSSatish Balay 
1479a30f8f8cSSatish Balay EXTERN_C_BEGIN
14804a2ae208SSatish Balay #undef __FUNCT__
14814a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1482be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1483a30f8f8cSSatish Balay {
1484a30f8f8cSSatish Balay   PetscFunctionBegin;
1485a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1486a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1487a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1488a30f8f8cSSatish Balay }
1489a30f8f8cSSatish Balay EXTERN_C_END
1490a30f8f8cSSatish Balay 
1491273d9f13SBarry Smith EXTERN_C_BEGIN
14924a2ae208SSatish Balay #undef __FUNCT__
1493a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1494be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1495a23d5eceSKris Buschelman {
1496a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1497dfbe8321SBarry Smith   PetscErrorCode ierr;
14981302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1499a23d5eceSKris Buschelman 
1500a23d5eceSKris Buschelman   PetscFunctionBegin;
1501a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1502a23d5eceSKris Buschelman 
1503a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1504a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1505a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
150677431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
150777431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1508a23d5eceSKris Buschelman   if (d_nnz) {
1509a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
151077431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1511a23d5eceSKris Buschelman     }
1512a23d5eceSKris Buschelman   }
1513a23d5eceSKris Buschelman   if (o_nnz) {
1514a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
151577431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1516a23d5eceSKris Buschelman     }
1517a23d5eceSKris Buschelman   }
1518a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1519a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1520a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1521a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1522a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1523a23d5eceSKris Buschelman 
1524a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1525a23d5eceSKris Buschelman   mbs = B->m/bs;
1526a23d5eceSKris Buschelman   Mbs = B->M/bs;
1527a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
152877431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs);
1529a23d5eceSKris Buschelman   }
1530a23d5eceSKris Buschelman 
1531521d7252SBarry Smith   B->bs  = bs;
1532a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1533a23d5eceSKris Buschelman   b->mbs = mbs;
1534a23d5eceSKris Buschelman   b->nbs = mbs;
1535a23d5eceSKris Buschelman   b->Mbs = Mbs;
1536a23d5eceSKris Buschelman   b->Nbs = Mbs;
1537a23d5eceSKris Buschelman 
1538a7cc72afSBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
1539a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1540a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1541a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1542a23d5eceSKris Buschelman   }
1543a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1544a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1545a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1546a23d5eceSKris Buschelman   b->cend      = b->rend;
1547a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1548a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1549a23d5eceSKris Buschelman   }
1550a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1551a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1552a23d5eceSKris Buschelman 
1553a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1554a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1555a23d5eceSKris Buschelman 
1556f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1557f69a0ea3SMatthew Knepley   ierr = MatSetSizes(b->A,B->m,B->m,B->m,B->m);CHKERRQ(ierr);
15589c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1559c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
156052e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
15619c097c71SKris Buschelman 
1562f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1563f69a0ea3SMatthew Knepley   ierr = MatSetSizes(b->B,B->m,B->M,B->m,B->M);CHKERRQ(ierr);
15644aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1565589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
156652e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1567a23d5eceSKris Buschelman 
1568a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1569a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1570a23d5eceSKris Buschelman 
1571a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1572a23d5eceSKris Buschelman }
1573a23d5eceSKris Buschelman EXTERN_C_END
1574a23d5eceSKris Buschelman 
15750bad9183SKris Buschelman /*MC
1576fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
15770bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
15780bad9183SKris Buschelman 
15790bad9183SKris Buschelman    Options Database Keys:
15800bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
15810bad9183SKris Buschelman 
15820bad9183SKris Buschelman   Level: beginner
15830bad9183SKris Buschelman 
15840bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
15850bad9183SKris Buschelman M*/
15860bad9183SKris Buschelman 
1587a23d5eceSKris Buschelman EXTERN_C_BEGIN
1588a23d5eceSKris Buschelman #undef __FUNCT__
15894a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1590be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1591b5df2d14SHong Zhang {
1592b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1593dfbe8321SBarry Smith   PetscErrorCode ierr;
1594b5df2d14SHong Zhang   PetscTruth     flg;
1595b5df2d14SHong Zhang 
1596b5df2d14SHong Zhang   PetscFunctionBegin;
1597b5df2d14SHong Zhang 
1598b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1599b0a32e0cSBarry Smith   B->data = (void*)b;
1600b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1601b5df2d14SHong Zhang 
1602b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1603b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1604b5df2d14SHong Zhang   B->mapping    = 0;
1605b5df2d14SHong Zhang   B->factor     = 0;
1606b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1607b5df2d14SHong Zhang 
1608b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1609b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1610b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1611b5df2d14SHong Zhang 
1612b5df2d14SHong Zhang   /* build local table of row and column ownerships */
16131302d50aSBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
1614273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1615273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
161652e6d16bSBarry Smith   ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1617b5df2d14SHong Zhang 
1618b5df2d14SHong Zhang   /* build cache for off array entries formed */
1619b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1620b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1621b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1622b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1623b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1624b5df2d14SHong Zhang 
1625f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1626b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
162764a35ccbSBarry Smith   b->setvalueslen     = 0;
1628b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1629b5df2d14SHong Zhang #endif
1630b5df2d14SHong Zhang 
1631b5df2d14SHong Zhang   /* stuff used in block assembly */
1632b5df2d14SHong Zhang   b->barray       = 0;
1633b5df2d14SHong Zhang 
1634b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1635b5df2d14SHong Zhang   b->lvec         = 0;
1636b5df2d14SHong Zhang   b->Mvctx        = 0;
163740781036SHong Zhang   b->slvec0       = 0;
163840781036SHong Zhang   b->slvec0b      = 0;
163940781036SHong Zhang   b->slvec1       = 0;
164040781036SHong Zhang   b->slvec1a      = 0;
164140781036SHong Zhang   b->slvec1b      = 0;
164240781036SHong Zhang   b->sMvctx       = 0;
1643b5df2d14SHong Zhang 
1644b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1645b5df2d14SHong Zhang   b->rowindices   = 0;
1646b5df2d14SHong Zhang   b->rowvalues    = 0;
1647b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1648b5df2d14SHong Zhang 
1649b5df2d14SHong Zhang   /* hash table stuff */
1650b5df2d14SHong Zhang   b->ht           = 0;
1651b5df2d14SHong Zhang   b->hd           = 0;
1652b5df2d14SHong Zhang   b->ht_size      = 0;
1653b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1654b5df2d14SHong Zhang   b->ht_fact      = 0;
1655b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1656b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1657b5df2d14SHong Zhang 
1658e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1659b5df2d14SHong Zhang   if (flg) {
1660f6275e2eSBarry Smith     PetscReal fact = 1.39;
1661b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1662e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1663b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1664b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
166563ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr);
1666b5df2d14SHong Zhang   }
1667b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1668b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1669b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1670b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1671b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1672b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1673b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1674b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1675b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1676a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1677a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1678a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
167923ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
168023ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
168123ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
168223ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1683b5df2d14SHong Zhang   PetscFunctionReturn(0);
1684b5df2d14SHong Zhang }
1685273d9f13SBarry Smith EXTERN_C_END
1686b5df2d14SHong Zhang 
1687209238afSKris Buschelman /*MC
1688002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1689209238afSKris Buschelman 
1690209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1691209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1692209238afSKris Buschelman 
1693209238afSKris Buschelman    Options Database Keys:
1694209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1695209238afSKris Buschelman 
1696209238afSKris Buschelman   Level: beginner
1697209238afSKris Buschelman 
1698209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1699209238afSKris Buschelman M*/
1700209238afSKris Buschelman 
1701209238afSKris Buschelman EXTERN_C_BEGIN
1702209238afSKris Buschelman #undef __FUNCT__
1703209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1704be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1705dfbe8321SBarry Smith {
17066849ba73SBarry Smith   PetscErrorCode ierr;
17071302d50aSBarry Smith   PetscMPIInt    size;
1708209238afSKris Buschelman 
1709209238afSKris Buschelman   PetscFunctionBegin;
1710209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1711209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1712209238afSKris Buschelman   if (size == 1) {
1713209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1714209238afSKris Buschelman   } else {
1715209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1716209238afSKris Buschelman   }
1717209238afSKris Buschelman   PetscFunctionReturn(0);
1718209238afSKris Buschelman }
1719209238afSKris Buschelman EXTERN_C_END
1720209238afSKris Buschelman 
17214a2ae208SSatish Balay #undef __FUNCT__
17224a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1723b5df2d14SHong Zhang /*@C
1724b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1725b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1726b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1727b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang    Collective on Mat
1730b5df2d14SHong Zhang 
1731b5df2d14SHong Zhang    Input Parameters:
1732b5df2d14SHong Zhang +  A - the matrix
1733b5df2d14SHong Zhang .  bs   - size of blockk
1734b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1735b5df2d14SHong Zhang            submatrix  (same for all local rows)
1736b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17376d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17386d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17396d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1740b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1741b5df2d14SHong Zhang            submatrix (same for all local rows).
1742b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1743b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1744b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1745b5df2d14SHong Zhang 
1746b5df2d14SHong Zhang 
1747b5df2d14SHong Zhang    Options Database Keys:
1748b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1749b5df2d14SHong Zhang                      block calculations (much slower)
1750b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1751b5df2d14SHong Zhang 
1752b5df2d14SHong Zhang    Notes:
1753b5df2d14SHong Zhang 
1754b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1755b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1756b5df2d14SHong Zhang 
175749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
175849a6f317SBarry Smith 
1759b5df2d14SHong Zhang    Storage Information:
1760b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1761b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1762b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1763b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1764b5df2d14SHong Zhang 
1765b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1766b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1767b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1768b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1769b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1770b5df2d14SHong Zhang 
1771b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1772b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1773b5df2d14SHong Zhang 
1774b5df2d14SHong Zhang .vb
1775b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1776b5df2d14SHong Zhang           -------------------
1777b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1778b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1779b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1780b5df2d14SHong Zhang           -------------------
1781b5df2d14SHong Zhang .ve
1782b5df2d14SHong Zhang 
1783b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1784b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17856d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17866d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1787b5df2d14SHong Zhang 
17886d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
17896d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1790b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1791b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1792b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1793b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1794b5df2d14SHong Zhang    matrices.
1795b5df2d14SHong Zhang 
1796b5df2d14SHong Zhang    Level: intermediate
1797b5df2d14SHong Zhang 
1798b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1799b5df2d14SHong Zhang 
1800b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1801b5df2d14SHong Zhang @*/
1802be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1803b5df2d14SHong Zhang {
18041302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1805b5df2d14SHong Zhang 
1806b5df2d14SHong Zhang   PetscFunctionBegin;
1807a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1808a23d5eceSKris Buschelman   if (f) {
1809a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1810b5df2d14SHong Zhang   }
1811b5df2d14SHong Zhang   PetscFunctionReturn(0);
1812b5df2d14SHong Zhang }
1813b5df2d14SHong Zhang 
18144a2ae208SSatish Balay #undef __FUNCT__
18154a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1816a30f8f8cSSatish Balay /*@C
1817a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1818a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1819a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1820a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1821a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1822a30f8f8cSSatish Balay 
1823a30f8f8cSSatish Balay    Collective on MPI_Comm
1824a30f8f8cSSatish Balay 
1825a30f8f8cSSatish Balay    Input Parameters:
1826a30f8f8cSSatish Balay +  comm - MPI communicator
1827a30f8f8cSSatish Balay .  bs   - size of blockk
1828a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1829a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1830a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1831a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1832a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1833a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1834a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1835a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1836a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1837a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1838a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
18396d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
18406d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
18416d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1842a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1843a30f8f8cSSatish Balay            submatrix (same for all local rows).
1844a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1845a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1846a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1847a30f8f8cSSatish Balay 
1848a30f8f8cSSatish Balay    Output Parameter:
1849a30f8f8cSSatish Balay .  A - the matrix
1850a30f8f8cSSatish Balay 
1851a30f8f8cSSatish Balay    Options Database Keys:
1852a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1853a30f8f8cSSatish Balay                      block calculations (much slower)
1854a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1855a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1856a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1857a30f8f8cSSatish Balay 
1858a30f8f8cSSatish Balay    Notes:
1859d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1860d1be2dadSMatthew Knepley 
1861a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1862a30f8f8cSSatish Balay    (possibly both).
1863a30f8f8cSSatish Balay 
1864a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1865a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1866a30f8f8cSSatish Balay 
186749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
186849a6f317SBarry Smith 
1869a30f8f8cSSatish Balay    Storage Information:
1870a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1871a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1872a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1873a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1874a30f8f8cSSatish Balay 
1875a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1876a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1877a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1878a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1879a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1880a30f8f8cSSatish Balay 
1881a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1882a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1883a30f8f8cSSatish Balay 
1884a30f8f8cSSatish Balay .vb
1885a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1886a30f8f8cSSatish Balay           -------------------
1887a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1888a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1889a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1890a30f8f8cSSatish Balay           -------------------
1891a30f8f8cSSatish Balay .ve
1892a30f8f8cSSatish Balay 
1893a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1894a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
18956d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18966d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1897a30f8f8cSSatish Balay 
18986d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18996d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1900a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1901a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1902a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1903a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1904a30f8f8cSSatish Balay    matrices.
1905a30f8f8cSSatish Balay 
1906a30f8f8cSSatish Balay    Level: intermediate
1907a30f8f8cSSatish Balay 
1908a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1909a30f8f8cSSatish Balay 
1910a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1911a30f8f8cSSatish Balay @*/
1912a30f8f8cSSatish Balay 
1913be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
1914a30f8f8cSSatish Balay {
19156849ba73SBarry Smith   PetscErrorCode ierr;
19161302d50aSBarry Smith   PetscMPIInt    size;
1917a30f8f8cSSatish Balay 
1918a30f8f8cSSatish Balay   PetscFunctionBegin;
1919f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1920f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1921273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1922273d9f13SBarry Smith   if (size > 1) {
1923b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1924b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1925273d9f13SBarry Smith   } else {
1926273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1927273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1928273d9f13SBarry Smith   }
1929a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1930a30f8f8cSSatish Balay }
1931a30f8f8cSSatish Balay 
1932a30f8f8cSSatish Balay 
19334a2ae208SSatish Balay #undef __FUNCT__
19344a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
19356849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1936a30f8f8cSSatish Balay {
1937a30f8f8cSSatish Balay   Mat            mat;
1938a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1939dfbe8321SBarry Smith   PetscErrorCode ierr;
1940521d7252SBarry Smith   PetscInt       len=0,nt,bs=matin->bs,mbs=oldmat->mbs;
1941387bc808SHong Zhang   PetscScalar    *array;
1942a30f8f8cSSatish Balay 
1943a30f8f8cSSatish Balay   PetscFunctionBegin;
1944a30f8f8cSSatish Balay   *newmat       = 0;
1945f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
1946f69a0ea3SMatthew Knepley   ierr = MatSetSizes(mat,matin->m,matin->n,matin->M,matin->N);CHKERRQ(ierr);
1947be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
19481d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1949e1b6402fSHong Zhang 
195082327fa8SHong Zhang   mat->factor       = matin->factor;
1951273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
195282327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
19537fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
19547fff6886SHong Zhang 
1955b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1956521d7252SBarry Smith   mat->bs  = matin->bs;
1957a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
1958a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
1959a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
1960a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
1961a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
1962a30f8f8cSSatish Balay 
1963a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
1964a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
1965a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
1966a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
1967a30f8f8cSSatish Balay   a->size         = oldmat->size;
1968a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1969a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1970a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1971a30f8f8cSSatish Balay   a->rowindices   = 0;
1972a30f8f8cSSatish Balay   a->rowvalues    = 0;
1973a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1974a30f8f8cSSatish Balay   a->barray       = 0;
1975a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
1976a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
1977a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
1978a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
1979a30f8f8cSSatish Balay 
1980a30f8f8cSSatish Balay   /* hash table stuff */
1981a30f8f8cSSatish Balay   a->ht           = 0;
1982a30f8f8cSSatish Balay   a->hd           = 0;
1983a30f8f8cSSatish Balay   a->ht_size      = 0;
1984a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
1985a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
1986a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
1987a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
1988a30f8f8cSSatish Balay 
19891302d50aSBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
1990a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
1991521d7252SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr);
1992a30f8f8cSSatish Balay   if (oldmat->colmap) {
1993a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
1994a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
1995a30f8f8cSSatish Balay #else
19961302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
199752e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
19981302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
1999a30f8f8cSSatish Balay #endif
2000a30f8f8cSSatish Balay   } else a->colmap = 0;
2001387bc808SHong Zhang 
2002a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20031302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
200452e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20051302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2006a30f8f8cSSatish Balay   } else a->garray = 0;
2007a30f8f8cSSatish Balay 
2008a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
200952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2010a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
201152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
201282327fa8SHong Zhang 
201382327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
201452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
201582327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
201652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2017387bc808SHong Zhang 
2018387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
20191ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2020387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2021387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
20221ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
20231ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2024387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
20251ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
202652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
202752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
202852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
202952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
203052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2031387bc808SHong Zhang 
2032387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2033387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2034387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
203552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
203682327fa8SHong Zhang 
2037a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
203852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2039a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
204052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2041b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2042a30f8f8cSSatish Balay   *newmat = mat;
2043a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2044a30f8f8cSSatish Balay }
2045a30f8f8cSSatish Balay 
2046a30f8f8cSSatish Balay #include "petscsys.h"
2047a30f8f8cSSatish Balay 
20484a2ae208SSatish Balay #undef __FUNCT__
20494a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2050f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2051a30f8f8cSSatish Balay {
2052a30f8f8cSSatish Balay   Mat            A;
20536849ba73SBarry Smith   PetscErrorCode ierr;
205413f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
205587828ca2SBarry Smith   PetscScalar    *vals,*buf;
2056a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2057a30f8f8cSSatish Balay   MPI_Status     status;
20582fd7e33dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens;
205913f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
20602fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
20611302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
20621302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
20631302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
206413f74950SBarry Smith   int            fd;
2065a30f8f8cSSatish Balay 
2066a30f8f8cSSatish Balay   PetscFunctionBegin;
2067b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2068a30f8f8cSSatish Balay 
2069a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2070a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2071a30f8f8cSSatish Balay   if (!rank) {
2072b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2073a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2074552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2075a30f8f8cSSatish Balay     if (header[3] < 0) {
207629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2077a30f8f8cSSatish Balay     }
2078a30f8f8cSSatish Balay   }
2079a30f8f8cSSatish Balay 
2080a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2081a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2082a30f8f8cSSatish Balay 
208329bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2084a30f8f8cSSatish Balay 
2085a30f8f8cSSatish Balay   /*
2086a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2087a30f8f8cSSatish Balay      divisible by the blocksize
2088a30f8f8cSSatish Balay   */
2089a30f8f8cSSatish Balay   Mbs        = M/bs;
2090a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2091a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2092a30f8f8cSSatish Balay   else                  Mbs++;
2093a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
209463ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr);
2095a30f8f8cSSatish Balay   }
2096a30f8f8cSSatish Balay 
2097a30f8f8cSSatish Balay   /* determine ownership of all rows */
2098a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2099a30f8f8cSSatish Balay   m          = mbs*bs;
2100a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2101a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2102a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2103a30f8f8cSSatish Balay   rowners[0] = 0;
2104a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2105a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2106a30f8f8cSSatish Balay   rstart = rowners[rank];
2107a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2108a30f8f8cSSatish Balay 
2109a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
21102fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2111a30f8f8cSSatish Balay   if (!rank) {
21121302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2113a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2114a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2115a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2116a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2117a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2118a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2119a30f8f8cSSatish Balay   } else {
2120a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2121a30f8f8cSSatish Balay   }
2122a30f8f8cSSatish Balay 
21230222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2124a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
21251302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
21261302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2127a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2128a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2129a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2130a30f8f8cSSatish Balay       }
2131a30f8f8cSSatish Balay     }
2132a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2133a30f8f8cSSatish Balay 
2134a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2135a30f8f8cSSatish Balay     maxnz = 0;
2136a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2137a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2138a30f8f8cSSatish Balay     }
21391302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2140a30f8f8cSSatish Balay 
2141a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2142a30f8f8cSSatish Balay     nz     = procsnz[0];
21431302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2144a30f8f8cSSatish Balay     mycols = ibuf;
2145a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2146a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2147a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2148a30f8f8cSSatish Balay 
2149a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2150a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2151a30f8f8cSSatish Balay       nz   = procsnz[i];
2152a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2153a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2154a30f8f8cSSatish Balay     }
2155a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2156a30f8f8cSSatish Balay     if (size != 1) {
2157a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2158a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2159a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2160a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2161a30f8f8cSSatish Balay     }
2162a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21630222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2164a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2165a30f8f8cSSatish Balay     nz = 0;
2166a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2167a30f8f8cSSatish Balay       nz += locrowlens[i];
2168a30f8f8cSSatish Balay     }
21691302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2170a30f8f8cSSatish Balay     mycols = ibuf;
2171a30f8f8cSSatish Balay     /* receive message of column indices*/
2172a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2173a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
217429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2175a30f8f8cSSatish Balay   }
2176a30f8f8cSSatish Balay 
2177a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
21781302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
21801302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
21811302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2182a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2183a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2184a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2185a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2186a30f8f8cSSatish Balay     dcount  = 0;
2187a30f8f8cSSatish Balay     odcount = 0;
2188a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2189a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2190a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
21910222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2192a30f8f8cSSatish Balay         if (!mask[tmp]) {
2193a30f8f8cSSatish Balay           mask[tmp] = 1;
21940222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
21950222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2196a30f8f8cSSatish Balay         }
2197a30f8f8cSSatish Balay       }
2198a30f8f8cSSatish Balay       rowcount++;
2199a30f8f8cSSatish Balay     }
2200a30f8f8cSSatish Balay 
22010222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22020222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2203a30f8f8cSSatish Balay 
2204a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2205a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2206a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2207a30f8f8cSSatish Balay   }
2208a30f8f8cSSatish Balay 
2209a30f8f8cSSatish Balay   /* create our matrix */
2210f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2211f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
221222191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
221322191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2214273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2215a30f8f8cSSatish Balay 
2216a30f8f8cSSatish Balay   if (!rank) {
221787828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2218a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2219a30f8f8cSSatish Balay     nz = procsnz[0];
2220a30f8f8cSSatish Balay     vals = buf;
2221a30f8f8cSSatish Balay     mycols = ibuf;
2222a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2223a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2224a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2225a30f8f8cSSatish Balay 
2226a30f8f8cSSatish Balay     /* insert into matrix */
2227a30f8f8cSSatish Balay     jj      = rstart*bs;
2228a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22297e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay       mycols += locrowlens[i];
2231a30f8f8cSSatish Balay       vals   += locrowlens[i];
2232a30f8f8cSSatish Balay       jj++;
2233a30f8f8cSSatish Balay     }
22347e06b45fSHong Zhang 
2235a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2236a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2237a30f8f8cSSatish Balay       nz   = procsnz[i];
2238a30f8f8cSSatish Balay       vals = buf;
2239a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2240a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2241a30f8f8cSSatish Balay     }
2242a30f8f8cSSatish Balay     /* the last proc */
2243a30f8f8cSSatish Balay     if (size != 1){
2244a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2245a30f8f8cSSatish Balay       vals = buf;
2246a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2247a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2248a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2249a30f8f8cSSatish Balay     }
2250a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22517e06b45fSHong Zhang 
2252a30f8f8cSSatish Balay   } else {
2253a30f8f8cSSatish Balay     /* receive numeric values */
225487828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2255a30f8f8cSSatish Balay 
2256a30f8f8cSSatish Balay     /* receive message of values*/
2257a30f8f8cSSatish Balay     vals   = buf;
2258a30f8f8cSSatish Balay     mycols = ibuf;
2259a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2260a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
226129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2262a30f8f8cSSatish Balay 
2263a30f8f8cSSatish Balay     /* insert into matrix */
2264a30f8f8cSSatish Balay     jj      = rstart*bs;
2265a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2266a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2267a30f8f8cSSatish Balay       mycols += locrowlens[i];
2268a30f8f8cSSatish Balay       vals   += locrowlens[i];
2269a30f8f8cSSatish Balay       jj++;
2270a30f8f8cSSatish Balay     }
2271a30f8f8cSSatish Balay   }
22727e06b45fSHong Zhang 
2273a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2274a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2275a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2276a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2277a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2278a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2279a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2280a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
228122191285SKris Buschelman   *newmat = A;
2282a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2283a30f8f8cSSatish Balay }
2284a30f8f8cSSatish Balay 
22854a2ae208SSatish Balay #undef __FUNCT__
22864a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2287dcf5cc72SBarry Smith /*XXXXX@
2288a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2289a30f8f8cSSatish Balay 
2290a30f8f8cSSatish Balay    Input Parameters:
2291a30f8f8cSSatish Balay .  mat  - the matrix
2292a30f8f8cSSatish Balay .  fact - factor
2293a30f8f8cSSatish Balay 
2294a30f8f8cSSatish Balay    Collective on Mat
2295a30f8f8cSSatish Balay 
2296a30f8f8cSSatish Balay    Level: advanced
2297a30f8f8cSSatish Balay 
2298a30f8f8cSSatish Balay   Notes:
2299a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2300a30f8f8cSSatish Balay 
2301a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2302a30f8f8cSSatish Balay 
2303a30f8f8cSSatish Balay .seealso: MatSetOption()
2304dcf5cc72SBarry Smith @XXXXX*/
2305dcf5cc72SBarry Smith 
230624d5174aSHong Zhang 
23074a2ae208SSatish Balay #undef __FUNCT__
23084a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2309dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
231024d5174aSHong Zhang {
231124d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2312f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2313ca54ac64SHong Zhang   PetscReal      atmp;
231487828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2315dfbe8321SBarry Smith   PetscErrorCode ierr;
23161302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
23171302d50aSBarry Smith   PetscMPIInt    rank,size;
23181302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
231987828ca2SBarry Smith   PetscScalar    *va;
23208a1c53f2SBarry Smith   MatScalar      *ba;
2321f4c0e9e4SHong Zhang   MPI_Status     stat;
232224d5174aSHong Zhang 
232324d5174aSHong Zhang   PetscFunctionBegin;
2324d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
23251ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2326f4c0e9e4SHong Zhang 
232756faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
232856faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2329f4c0e9e4SHong Zhang 
2330521d7252SBarry Smith   bs   = A->bs;
2331f4c0e9e4SHong Zhang   mbs  = a->mbs;
2332f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2333f4c0e9e4SHong Zhang   ba   = b->a;
2334f4c0e9e4SHong Zhang   bi   = b->i;
2335f4c0e9e4SHong Zhang   bj   = b->j;
2336f4c0e9e4SHong Zhang 
2337f4c0e9e4SHong Zhang   /* find ownerships */
2338f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2339f4c0e9e4SHong Zhang 
2340f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
234182502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2342ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2343f4c0e9e4SHong Zhang 
2344f4c0e9e4SHong Zhang   /* row_max for B */
2345b8475685SHong Zhang   if (rank != size-1){
2346f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2347f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2348f4c0e9e4SHong Zhang       brow  = bs*i;
2349f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2350f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2351f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2352ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
235304d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2354f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2355f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2356ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2357ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2358f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2359f4c0e9e4SHong Zhang           }
2360f4c0e9e4SHong Zhang         }
2361f4c0e9e4SHong Zhang         bj++;
2362f4c0e9e4SHong Zhang       }
2363f4c0e9e4SHong Zhang     }
2364f4c0e9e4SHong Zhang 
2365f4c0e9e4SHong Zhang     /* send values to its owners */
2366f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2367f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2368ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
236956faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2370ca54ac64SHong Zhang     }
2371f4c0e9e4SHong Zhang   }
2372f4c0e9e4SHong Zhang 
2373f4c0e9e4SHong Zhang   /* receive values */
2374ca54ac64SHong Zhang   if (rank){
2375f4c0e9e4SHong Zhang     rvalues = work;
2376ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2377f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
237856faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2379f4c0e9e4SHong Zhang       /* process values */
2380f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2381ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2382f4c0e9e4SHong Zhang       }
2383f4c0e9e4SHong Zhang     }
2384ca54ac64SHong Zhang   }
2385f4c0e9e4SHong Zhang 
23861ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2387ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
238824d5174aSHong Zhang   PetscFunctionReturn(0);
238924d5174aSHong Zhang }
23902798e883SHong Zhang 
23912798e883SHong Zhang #undef __FUNCT__
23922798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
23931302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
23942798e883SHong Zhang {
23952798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2396dfbe8321SBarry Smith   PetscErrorCode ierr;
2397521d7252SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->bs;
2398efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2399ffe4fb16SHong Zhang   Vec            bb1;
2400ffe4fb16SHong Zhang 
2401ffe4fb16SHong Zhang   PetscFunctionBegin;
240277431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2403ffe4fb16SHong Zhang   if (bs > 1)
2404ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2405ffe4fb16SHong Zhang 
2406ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2407ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2408ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2409ffe4fb16SHong Zhang       its--;
2410ffe4fb16SHong Zhang     }
2411ffe4fb16SHong Zhang 
2412ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2413ffe4fb16SHong Zhang     while (its--){
2414ffe4fb16SHong Zhang 
2415ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2416ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2417ffe4fb16SHong Zhang 
2418ffe4fb16SHong Zhang       /* copy xx into slvec0a */
24191ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
24201ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2421ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24221ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2423ffe4fb16SHong Zhang 
2424efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2425ffe4fb16SHong Zhang 
2426ffe4fb16SHong Zhang       /* copy bb into slvec1a */
24271ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
24281ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2429ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24301ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2431ffe4fb16SHong Zhang 
2432ffe4fb16SHong Zhang       /* set slvec1b = 0 */
24332dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2434ffe4fb16SHong Zhang 
2435ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
24361ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
24371ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2438ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2439ffe4fb16SHong Zhang 
2440ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2441ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2442ffe4fb16SHong Zhang 
2443ffe4fb16SHong Zhang       /* local diagonal sweep */
2444ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2445ffe4fb16SHong Zhang     }
2446ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2447ffe4fb16SHong Zhang   } else {
2448ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2449ffe4fb16SHong Zhang   }
2450ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2451ffe4fb16SHong Zhang }
2452ffe4fb16SHong Zhang 
2453ffe4fb16SHong Zhang #undef __FUNCT__
2454ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
24551302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2456ffe4fb16SHong Zhang {
2457ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2458dfbe8321SBarry Smith   PetscErrorCode ierr;
24592798e883SHong Zhang   Vec            lvec1,bb1;
24602798e883SHong Zhang 
24612798e883SHong Zhang   PetscFunctionBegin;
246277431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2463521d7252SBarry Smith   if (matin->bs > 1)
24642798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
24652798e883SHong Zhang 
2466c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
24672798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2468bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
24692798e883SHong Zhang       its--;
24702798e883SHong Zhang     }
24712798e883SHong Zhang 
24722798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
24732798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24742798e883SHong Zhang     while (its--){
24752798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24762798e883SHong Zhang 
24772798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
24782798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2479efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
24802798e883SHong Zhang 
24812798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24822798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
24832798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24842798e883SHong Zhang 
24852798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2486efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
24872798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
24882798e883SHong Zhang 
24892798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24902798e883SHong Zhang 
2491c14dc6b6SHong Zhang       /* diagonal sweep */
2492bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
24932798e883SHong Zhang     }
24942798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
24952798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2496c14dc6b6SHong Zhang   } else {
2497c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2498c14dc6b6SHong Zhang   }
24992798e883SHong Zhang   PetscFunctionReturn(0);
25002798e883SHong Zhang }
25012798e883SHong Zhang 
2502