1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 86214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 127087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 13a30f8f8cSSatish Balay { 14f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 15dfbe8321SBarry Smith PetscErrorCode ierr; 16a30f8f8cSSatish Balay 17a30f8f8cSSatish Balay PetscFunctionBegin; 18a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 19a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 20a30f8f8cSSatish Balay PetscFunctionReturn(0); 21a30f8f8cSSatish Balay } 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 36d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 37a30f8f8cSSatish Balay { \ 38a30f8f8cSSatish Balay \ 39a30f8f8cSSatish Balay brow = row/bs; \ 40a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 41a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 42a30f8f8cSSatish Balay bcol = col/bs; \ 43a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 44a30f8f8cSSatish Balay low = 0; high = nrow; \ 45a30f8f8cSSatish Balay while (high-low > 3) { \ 46a30f8f8cSSatish Balay t = (low+high)/2; \ 47a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 48a30f8f8cSSatish Balay else low = t; \ 49a30f8f8cSSatish Balay } \ 50a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 51a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 52a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 53a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 54a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 55a30f8f8cSSatish Balay else *bap = value; \ 56a30f8f8cSSatish Balay goto a_noinsert; \ 57a30f8f8cSSatish Balay } \ 58a30f8f8cSSatish Balay } \ 59a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 60d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 61fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 62a30f8f8cSSatish Balay N = nrow++ - 1; \ 63a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 64a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 65a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 66a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 69a30f8f8cSSatish Balay rp[_i] = bcol; \ 70a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 71e56f5c9eSBarry Smith A->nonzerostate++;\ 72a30f8f8cSSatish Balay a_noinsert:; \ 73a30f8f8cSSatish Balay ailen[brow] = nrow; \ 74a30f8f8cSSatish Balay } 75e5e170daSBarry Smith 76d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 77a30f8f8cSSatish Balay { \ 78a30f8f8cSSatish Balay brow = row/bs; \ 79a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 80a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 81a30f8f8cSSatish Balay bcol = col/bs; \ 82a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 83a30f8f8cSSatish Balay low = 0; high = nrow; \ 84a30f8f8cSSatish Balay while (high-low > 3) { \ 85a30f8f8cSSatish Balay t = (low+high)/2; \ 86a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 87a30f8f8cSSatish Balay else low = t; \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 90a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 91a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 92a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 93a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 94a30f8f8cSSatish Balay else *bap = value; \ 95a30f8f8cSSatish Balay goto b_noinsert; \ 96a30f8f8cSSatish Balay } \ 97a30f8f8cSSatish Balay } \ 98a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 99d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 100fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 101a30f8f8cSSatish Balay N = nrow++ - 1; \ 102a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 103a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 104a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 105a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 108a30f8f8cSSatish Balay rp[_i] = bcol; \ 109a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110e56f5c9eSBarry Smith B->nonzerostate++;\ 111a30f8f8cSSatish Balay b_noinsert:; \ 112a30f8f8cSSatish Balay bilen[brow] = nrow; \ 113a30f8f8cSSatish Balay } 114a30f8f8cSSatish Balay 115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 116a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 117a30f8f8cSSatish Balay */ 1184a2ae208SSatish Balay #undef __FUNCT__ 119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 121a30f8f8cSSatish Balay { 122a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 123a30f8f8cSSatish Balay MatScalar value; 124ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 125dfbe8321SBarry Smith PetscErrorCode ierr; 1261302d50aSBarry Smith PetscInt i,j,row,col; 127d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 128d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 129d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Some Variables required in the macro */ 132a30f8f8cSSatish Balay Mat A = baij->A; 133a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1341302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 135a30f8f8cSSatish Balay MatScalar *aa =a->a; 136a30f8f8cSSatish Balay 137a30f8f8cSSatish Balay Mat B = baij->B; 138a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1391302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 140a30f8f8cSSatish Balay MatScalar *ba =b->a; 141a30f8f8cSSatish Balay 1421302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1431302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 144a30f8f8cSSatish Balay MatScalar *ap,*bap; 145a30f8f8cSSatish Balay 146a30f8f8cSSatish Balay /* for stash */ 1470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1480298fd71SBarry Smith MatScalar *v_loc = NULL; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay PetscFunctionBegin; 151a30f8f8cSSatish Balay if (!baij->donotstash) { 15259ffdab8SBarry Smith if (n > baij->n_loc) { 15359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 155785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 156785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15726fbe8dcSKarl Rupp 15859ffdab8SBarry Smith baij->n_loc = n; 15959ffdab8SBarry Smith } 16059ffdab8SBarry Smith in_loc = baij->in_loc; 16159ffdab8SBarry Smith v_loc = baij->v_loc; 162a30f8f8cSSatish Balay } 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay for (i=0; i<m; i++) { 165a30f8f8cSSatish Balay if (im[i] < 0) continue; 1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 167e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 168a30f8f8cSSatish Balay #endif 169a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 170a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 171a30f8f8cSSatish Balay for (j=0; j<n; j++) { 17201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17301b2bd88SHong Zhang if (a->ignore_ltriangular) { 17401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17526fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17601b2bd88SHong Zhang } 177a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 178a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 179a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 180a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 181db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 182db4deed7SKarl Rupp else value = v[i+j*m]; 183d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 184a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 185a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 187cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 188a30f8f8cSSatish Balay #endif 189a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 190a30f8f8cSSatish Balay if (mat->was_assembled) { 191a30f8f8cSSatish Balay if (!baij->colmap) { 192ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 193a30f8f8cSSatish Balay } 194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 195a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19671730473SSatish Balay col = col - 1; 197a30f8f8cSSatish Balay #else 19871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 199a30f8f8cSSatish Balay #endif 200a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 201ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 202a30f8f8cSSatish Balay col = in[j]; 203a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 204a30f8f8cSSatish Balay B = baij->B; 205a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 206a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 207a30f8f8cSSatish Balay ba = b->a; 20871730473SSatish Balay } else col += in[j]%bs; 209a30f8f8cSSatish Balay } else col = in[j]; 210db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 211db4deed7SKarl Rupp else value = v[i+j*m]; 212d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 213a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 214a30f8f8cSSatish Balay } 215a30f8f8cSSatish Balay } 216a30f8f8cSSatish Balay } else { /* off processor entry */ 2174cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 218a30f8f8cSSatish Balay if (!baij->donotstash) { 2195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 220a30f8f8cSSatish Balay n_loc = 0; 221a30f8f8cSSatish Balay for (j=0; j<n; j++) { 222f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 223a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 224a30f8f8cSSatish Balay if (roworiented) { 225a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 226a30f8f8cSSatish Balay } else { 227a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay n_loc++; 230a30f8f8cSSatish Balay } 231b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay PetscFunctionReturn(0); 236a30f8f8cSSatish Balay } 237a30f8f8cSSatish Balay 2384a2ae208SSatish Balay #undef __FUNCT__ 23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined" 24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 24136bd2089SBarry Smith { 24236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 24336bd2089SBarry Smith PetscErrorCode ierr; 24436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 24536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 24636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 24736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 24836bd2089SBarry Smith const PetscScalar *value = v; 24936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 25036bd2089SBarry Smith 25136bd2089SBarry Smith PetscFunctionBegin; 25236bd2089SBarry Smith if (col < row) { 25336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 25436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 25536bd2089SBarry Smith } 25636bd2089SBarry Smith rp = aj + ai[row]; 25736bd2089SBarry Smith ap = aa + bs2*ai[row]; 25836bd2089SBarry Smith rmax = imax[row]; 25936bd2089SBarry Smith nrow = ailen[row]; 26036bd2089SBarry Smith value = v; 26136bd2089SBarry Smith low = 0; 26236bd2089SBarry Smith high = nrow; 26336bd2089SBarry Smith 26436bd2089SBarry Smith while (high-low > 7) { 26536bd2089SBarry Smith t = (low+high)/2; 26636bd2089SBarry Smith if (rp[t] > col) high = t; 26736bd2089SBarry Smith else low = t; 26836bd2089SBarry Smith } 26936bd2089SBarry Smith for (i=low; i<high; i++) { 27036bd2089SBarry Smith if (rp[i] > col) break; 27136bd2089SBarry Smith if (rp[i] == col) { 27236bd2089SBarry Smith bap = ap + bs2*i; 27336bd2089SBarry Smith if (roworiented) { 27436bd2089SBarry Smith if (is == ADD_VALUES) { 27536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 27636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 27736bd2089SBarry Smith bap[jj] += *value++; 27836bd2089SBarry Smith } 27936bd2089SBarry Smith } 28036bd2089SBarry Smith } else { 28136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 28236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 28336bd2089SBarry Smith bap[jj] = *value++; 28436bd2089SBarry Smith } 28536bd2089SBarry Smith } 28636bd2089SBarry Smith } 28736bd2089SBarry Smith } else { 28836bd2089SBarry Smith if (is == ADD_VALUES) { 28936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29136bd2089SBarry Smith *bap++ += *value++; 29236bd2089SBarry Smith } 29336bd2089SBarry Smith } 29436bd2089SBarry Smith } else { 29536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29736bd2089SBarry Smith *bap++ = *value++; 29836bd2089SBarry Smith } 29936bd2089SBarry Smith } 30036bd2089SBarry Smith } 30136bd2089SBarry Smith } 30236bd2089SBarry Smith goto noinsert2; 30336bd2089SBarry Smith } 30436bd2089SBarry Smith } 30536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 30636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 30736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 30836bd2089SBarry Smith N = nrow++ - 1; high++; 30936bd2089SBarry Smith /* shift up all the later entries in this row */ 31036bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 31136bd2089SBarry Smith rp[ii+1] = rp[ii]; 31236bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 31336bd2089SBarry Smith } 31436bd2089SBarry Smith if (N >= i) { 31536bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 31636bd2089SBarry Smith } 31736bd2089SBarry Smith rp[i] = col; 31836bd2089SBarry Smith bap = ap + bs2*i; 31936bd2089SBarry Smith if (roworiented) { 32036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32136bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 32236bd2089SBarry Smith bap[jj] = *value++; 32336bd2089SBarry Smith } 32436bd2089SBarry Smith } 32536bd2089SBarry Smith } else { 32636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 32836bd2089SBarry Smith *bap++ = *value++; 32936bd2089SBarry Smith } 33036bd2089SBarry Smith } 33136bd2089SBarry Smith } 33236bd2089SBarry Smith noinsert2:; 33336bd2089SBarry Smith ailen[row] = nrow; 33436bd2089SBarry Smith PetscFunctionReturn(0); 33536bd2089SBarry Smith } 33636bd2089SBarry Smith 33736bd2089SBarry Smith #undef __FUNCT__ 33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined" 33936bd2089SBarry Smith /* 34036bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 34136bd2089SBarry Smith */ 34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34336bd2089SBarry Smith { 34436bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 34536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34636bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 34736bd2089SBarry Smith PetscErrorCode ierr; 34836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 35036bd2089SBarry Smith const PetscScalar *value = v; 35136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35236bd2089SBarry Smith 35336bd2089SBarry Smith PetscFunctionBegin; 35436bd2089SBarry Smith rp = aj + ai[row]; 35536bd2089SBarry Smith ap = aa + bs2*ai[row]; 35636bd2089SBarry Smith rmax = imax[row]; 35736bd2089SBarry Smith nrow = ailen[row]; 35836bd2089SBarry Smith low = 0; 35936bd2089SBarry Smith high = nrow; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith while (high-low > 7) { 36236bd2089SBarry Smith t = (low+high)/2; 36336bd2089SBarry Smith if (rp[t] > col) high = t; 36436bd2089SBarry Smith else low = t; 36536bd2089SBarry Smith } 36636bd2089SBarry Smith for (i=low; i<high; i++) { 36736bd2089SBarry Smith if (rp[i] > col) break; 36836bd2089SBarry Smith if (rp[i] == col) { 36936bd2089SBarry Smith bap = ap + bs2*i; 37036bd2089SBarry Smith if (roworiented) { 37136bd2089SBarry Smith if (is == ADD_VALUES) { 37236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37436bd2089SBarry Smith bap[jj] += *value++; 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } 37736bd2089SBarry Smith } else { 37836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38036bd2089SBarry Smith bap[jj] = *value++; 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith if (is == ADD_VALUES) { 38636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 38736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38836bd2089SBarry Smith bap[jj] += value[jj]; 38936bd2089SBarry Smith } 39036bd2089SBarry Smith bap += bs; 39136bd2089SBarry Smith } 39236bd2089SBarry Smith } else { 39336bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 39436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39536bd2089SBarry Smith bap[jj] = value[jj]; 39636bd2089SBarry Smith } 39736bd2089SBarry Smith bap += bs; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith goto noinsert2; 40236bd2089SBarry Smith } 40336bd2089SBarry Smith } 40436bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40536bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 40636bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40736bd2089SBarry Smith N = nrow++ - 1; high++; 40836bd2089SBarry Smith /* shift up all the later entries in this row */ 40936bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 41036bd2089SBarry Smith rp[ii+1] = rp[ii]; 41136bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 41236bd2089SBarry Smith } 41336bd2089SBarry Smith if (N >= i) { 41436bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp[i] = col; 41736bd2089SBarry Smith bap = ap + bs2*i; 41836bd2089SBarry Smith if (roworiented) { 41936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 42136bd2089SBarry Smith bap[jj] = *value++; 42236bd2089SBarry Smith } 42336bd2089SBarry Smith } 42436bd2089SBarry Smith } else { 42536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42736bd2089SBarry Smith *bap++ = *value++; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith } 43036bd2089SBarry Smith } 43136bd2089SBarry Smith noinsert2:; 43236bd2089SBarry Smith ailen[row] = nrow; 43336bd2089SBarry Smith PetscFunctionReturn(0); 43436bd2089SBarry Smith } 43536bd2089SBarry Smith 43636bd2089SBarry Smith #undef __FUNCT__ 437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 43836bd2089SBarry Smith /* 43936bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 44036bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 44136bd2089SBarry Smith */ 442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 443a30f8f8cSSatish Balay { 4440880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 445f15d580aSBarry Smith const MatScalar *value; 446f15d580aSBarry Smith MatScalar *barray =baij->barray; 447ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 450899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 451d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 4520880e062SHong Zhang 453a30f8f8cSSatish Balay PetscFunctionBegin; 4540880e062SHong Zhang if (!barray) { 455785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 4560880e062SHong Zhang baij->barray = barray; 4570880e062SHong Zhang } 4580880e062SHong Zhang 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang stepval = (n-1)*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang stepval = (m-1)*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (i=0; i<m; i++) { 4650880e062SHong Zhang if (im[i] < 0) continue; 4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 467bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 4680880e062SHong Zhang #endif 4690880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4700880e062SHong Zhang row = im[i] - rstart; 4710880e062SHong Zhang for (j=0; j<n; j++) { 472f3f98c53SJed Brown if (im[i] > in[j]) { 473f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 474e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 475f3f98c53SJed Brown } 4760880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4770880e062SHong Zhang if ((roworiented) && (n == 1)) { 478f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4790880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 480f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4810880e062SHong Zhang } else { /* Here a copy is required */ 4820880e062SHong Zhang if (roworiented) { 4830880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4840880e062SHong Zhang } else { 4850880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4860880e062SHong Zhang } 4870880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4880880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4890880e062SHong Zhang *barray++ = *value++; 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang barray -=bs2; 4930880e062SHong Zhang } 4940880e062SHong Zhang 4950880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 4960880e062SHong Zhang col = in[j] - cstart; 49736bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 49826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 500bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5010880e062SHong Zhang #endif 5020880e062SHong Zhang else { 5030880e062SHong Zhang if (mat->was_assembled) { 5040880e062SHong Zhang if (!baij->colmap) { 505ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5060880e062SHong Zhang } 5070880e062SHong Zhang 5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5101302d50aSBarry Smith { PetscInt data; 5110880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 512e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5130880e062SHong Zhang } 5140880e062SHong Zhang #else 515e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5160880e062SHong Zhang #endif 5170880e062SHong Zhang #endif 5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5190880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5200880e062SHong Zhang col = (col - 1)/bs; 5210880e062SHong Zhang #else 5220880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5230880e062SHong Zhang #endif 5240880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 525ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5260880e062SHong Zhang col = in[j]; 5270880e062SHong Zhang } 52826fbe8dcSKarl Rupp } else col = in[j]; 52936bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 5300880e062SHong Zhang } 5310880e062SHong Zhang } 5320880e062SHong Zhang } else { 533bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 5340880e062SHong Zhang if (!baij->donotstash) { 5350880e062SHong Zhang if (roworiented) { 5360880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5370880e062SHong Zhang } else { 5380880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5390880e062SHong Zhang } 5400880e062SHong Zhang } 5410880e062SHong Zhang } 5420880e062SHong Zhang } 5430880e062SHong Zhang PetscFunctionReturn(0); 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 553d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 558e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 563e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data--; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 594dfbe8321SBarry Smith PetscErrorCode ierr; 595a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay if (baij->size == 1) { 599a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 600a30f8f8cSSatish Balay } else { 601a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 602785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 603a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 604a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 605a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 607ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6088f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 609a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6100b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6110b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6120b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6130b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 614899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 615d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6160b8dc8d2SHong Zhang MatScalar *v; 6170b8dc8d2SHong Zhang 618dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 619d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6200b8dc8d2SHong Zhang /* Amat */ 6210b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6220b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6230b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6240b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6250b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6260b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6270b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6280b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6290b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6300b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6310b8dc8d2SHong Zhang /* non-diagonal block */ 6320b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 6330b8dc8d2SHong Zhang } 6340b8dc8d2SHong Zhang } 6350b8dc8d2SHong Zhang } 6360b8dc8d2SHong Zhang } 6370b8dc8d2SHong Zhang /* Bmat */ 6380b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 6390b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6400b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6410b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 6420b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6430b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 6440b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6450b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6460b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6470b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6480b8dc8d2SHong Zhang rsum[grow+row] += vabs; 6490b8dc8d2SHong Zhang } 6500b8dc8d2SHong Zhang } 6510b8dc8d2SHong Zhang } 6520b8dc8d2SHong Zhang } 653ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6540b8dc8d2SHong Zhang *norm = 0.0; 655d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 6560b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 6570b8dc8d2SHong Zhang } 65874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 659f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 660a30f8f8cSSatish Balay } 661a30f8f8cSSatish Balay PetscFunctionReturn(0); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 6644a2ae208SSatish Balay #undef __FUNCT__ 6654a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 666dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 667a30f8f8cSSatish Balay { 668a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 669dfbe8321SBarry Smith PetscErrorCode ierr; 6701302d50aSBarry Smith PetscInt nstash,reallocs; 671a30f8f8cSSatish Balay InsertMode addv; 672a30f8f8cSSatish Balay 673a30f8f8cSSatish Balay PetscFunctionBegin; 67426fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 677ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 678ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 679a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 680a30f8f8cSSatish Balay 681d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 6821e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 683a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6841e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 685a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6861e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 687a30f8f8cSSatish Balay PetscFunctionReturn(0); 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay 6904a2ae208SSatish Balay #undef __FUNCT__ 6914a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 692dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 693a30f8f8cSSatish Balay { 694a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 695a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 6966849ba73SBarry Smith PetscErrorCode ierr; 69713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 698e44c0bd4SBarry Smith PetscInt *row,*col; 699ace3abfcSBarry Smith PetscBool other_disassembled; 70013f74950SBarry Smith PetscMPIInt n; 701ace3abfcSBarry Smith PetscBool r1,r2,r3; 702a30f8f8cSSatish Balay MatScalar *val; 703a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 704a30f8f8cSSatish Balay 70591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 706a30f8f8cSSatish Balay PetscFunctionBegin; 7074cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 708a30f8f8cSSatish Balay while (1) { 709a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 710a30f8f8cSSatish Balay if (!flg) break; 711a30f8f8cSSatish Balay 712a30f8f8cSSatish Balay for (i=0; i<n;) { 713a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 71426fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 71526fbe8dcSKarl Rupp if (row[j] != rstart) break; 71626fbe8dcSKarl Rupp } 717a30f8f8cSSatish Balay if (j < n) ncols = j-i; 718a30f8f8cSSatish Balay else ncols = n-i; 719a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 720dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 721a30f8f8cSSatish Balay i = j; 722a30f8f8cSSatish Balay } 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 725a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 726a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 727a30f8f8cSSatish Balay restore the original flags */ 728a30f8f8cSSatish Balay r1 = baij->roworiented; 729a30f8f8cSSatish Balay r2 = a->roworiented; 73091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 73126fbe8dcSKarl Rupp 732a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 733a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 73426fbe8dcSKarl Rupp 73591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 736a30f8f8cSSatish Balay while (1) { 737a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 738a30f8f8cSSatish Balay if (!flg) break; 739a30f8f8cSSatish Balay 740a30f8f8cSSatish Balay for (i=0; i<n;) { 741a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 74226fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 74326fbe8dcSKarl Rupp if (row[j] != rstart) break; 74426fbe8dcSKarl Rupp } 745a30f8f8cSSatish Balay if (j < n) ncols = j-i; 746a30f8f8cSSatish Balay else ncols = n-i; 747dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 748a30f8f8cSSatish Balay i = j; 749a30f8f8cSSatish Balay } 750a30f8f8cSSatish Balay } 751a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 75226fbe8dcSKarl Rupp 753a30f8f8cSSatish Balay baij->roworiented = r1; 754a30f8f8cSSatish Balay a->roworiented = r2; 75526fbe8dcSKarl Rupp 75691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 757a30f8f8cSSatish Balay } 758a30f8f8cSSatish Balay 759a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 760a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 761a30f8f8cSSatish Balay 762a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 763a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 764a30f8f8cSSatish Balay /* 765a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 766a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 767a30f8f8cSSatish Balay */ 768a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 769ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 770a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 771ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay } 774a30f8f8cSSatish Balay 775a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 77640781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 777a30f8f8cSSatish Balay } 778a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 779a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 780a30f8f8cSSatish Balay 78174ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 78226fbe8dcSKarl Rupp 783a30f8f8cSSatish Balay baij->rowvalues = 0; 7844f9cfa9eSBarry Smith 7854f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 7864f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 787e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 78809e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 789e56f5c9eSBarry Smith } 790a30f8f8cSSatish Balay PetscFunctionReturn(0); 791a30f8f8cSSatish Balay } 792a30f8f8cSSatish Balay 7937da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 794dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 7959804daf3SBarry Smith #include <petscdraw.h> 7964a2ae208SSatish Balay #undef __FUNCT__ 7974a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7986849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 799a30f8f8cSSatish Balay { 800a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 801dfbe8321SBarry Smith PetscErrorCode ierr; 802d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8037da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 804ace3abfcSBarry Smith PetscBool iascii,isdraw; 805b0a32e0cSBarry Smith PetscViewer sviewer; 806f3ef73ceSBarry Smith PetscViewerFormat format; 807a30f8f8cSSatish Balay 808a30f8f8cSSatish Balay PetscFunctionBegin; 809251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 810251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 81132077d6dSBarry Smith if (iascii) { 812b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 813456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 814a30f8f8cSSatish Balay MatInfo info; 815ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 816a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8177b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 8187b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 819a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 820e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 822e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 823b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8247b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 82507d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 826a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 827a30f8f8cSSatish Balay PetscFunctionReturn(0); 828fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 82977431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 830a30f8f8cSSatish Balay PetscFunctionReturn(0); 831c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 832c1490034SHong Zhang PetscFunctionReturn(0); 833a30f8f8cSSatish Balay } 834a30f8f8cSSatish Balay } 835a30f8f8cSSatish Balay 836a30f8f8cSSatish Balay if (isdraw) { 837b0a32e0cSBarry Smith PetscDraw draw; 838ace3abfcSBarry Smith PetscBool isnull; 839b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 840b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 841a30f8f8cSSatish Balay } 842a30f8f8cSSatish Balay 8437da1fb6eSBarry Smith { 844a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 845a30f8f8cSSatish Balay Mat A; 84665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 84765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 848d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 849a30f8f8cSSatish Balay MatScalar *a; 8503e219373SBarry Smith const char *matname; 851a30f8f8cSSatish Balay 852f204ca49SKris Buschelman /* Should this be the same type as mat? */ 853ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 854a30f8f8cSSatish Balay if (!rank) { 855f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 856a30f8f8cSSatish Balay } else { 857f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 858a30f8f8cSSatish Balay } 859f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 8600298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 8612b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 8623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 863a30f8f8cSSatish Balay 864a30f8f8cSSatish Balay /* copy over the A part */ 86565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 866a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 867785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 868a30f8f8cSSatish Balay 869a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 870e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 87126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 872a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 873e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 874a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 875dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 87626fbe8dcSKarl Rupp col++; 87726fbe8dcSKarl Rupp a += bs; 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay } 880a30f8f8cSSatish Balay } 881a30f8f8cSSatish Balay /* copy over the B part */ 88265d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 88365d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 884a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 885e9f7bc9eSHong Zhang 886e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 88726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 888a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 889a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 890a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 891799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 89226fbe8dcSKarl Rupp col++; 89326fbe8dcSKarl Rupp a += bs; 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay } 896a30f8f8cSSatish Balay } 897a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 898a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 899a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 900a30f8f8cSSatish Balay /* 901a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 902b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 903a30f8f8cSSatish Balay */ 904*3f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 905ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9063e219373SBarry Smith if (!rank) { 907ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 9087da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 909a30f8f8cSSatish Balay } 910*3f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9116bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 912a30f8f8cSSatish Balay } 913a30f8f8cSSatish Balay PetscFunctionReturn(0); 914a30f8f8cSSatish Balay } 915a30f8f8cSSatish Balay 9164a2ae208SSatish Balay #undef __FUNCT__ 9174a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 918dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 919a30f8f8cSSatish Balay { 920dfbe8321SBarry Smith PetscErrorCode ierr; 921ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 922a30f8f8cSSatish Balay 923a30f8f8cSSatish Balay PetscFunctionBegin; 924251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 925251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 926251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 927251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 92832077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 929a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 930a30f8f8cSSatish Balay } 931a30f8f8cSSatish Balay PetscFunctionReturn(0); 932a30f8f8cSSatish Balay } 933a30f8f8cSSatish Balay 9344a2ae208SSatish Balay #undef __FUNCT__ 9354a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 936dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 937a30f8f8cSSatish Balay { 938a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 939dfbe8321SBarry Smith PetscErrorCode ierr; 940a30f8f8cSSatish Balay 941a30f8f8cSSatish Balay PetscFunctionBegin; 942a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 943d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 944a30f8f8cSSatish Balay #endif 945a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 946a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 9476bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 9486bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 949a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 9506bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 951a30f8f8cSSatish Balay #else 95205b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 953a30f8f8cSSatish Balay #endif 95405b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 9556bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 9566bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 9576bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 9586bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 9596bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 9606bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 9616bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 9626bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 9635755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 96405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 96505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 9666bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 9676bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 9686bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 969ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 97005b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 971a30f8f8cSSatish Balay #endif 97259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 97359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 974899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 975bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 976901853e0SKris Buschelman 977dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 978bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 979bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 980bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 981bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 982bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 9836214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 9846214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 9856214f412SHong Zhang #endif 986a30f8f8cSSatish Balay PetscFunctionReturn(0); 987a30f8f8cSSatish Balay } 988a30f8f8cSSatish Balay 9894a2ae208SSatish Balay #undef __FUNCT__ 990547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 991547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 992547795f9SHong Zhang { 993547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 994547795f9SHong Zhang PetscErrorCode ierr; 995547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 9966de40e93SBarry Smith PetscScalar *from; 9976de40e93SBarry Smith const PetscScalar *x; 998547795f9SHong Zhang 999547795f9SHong Zhang PetscFunctionBegin; 1000547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1001e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1002547795f9SHong Zhang 1003547795f9SHong Zhang /* diagonal part */ 1004547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1005547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1006547795f9SHong Zhang 1007547795f9SHong Zhang /* subdiagonal part */ 1008547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1009547795f9SHong Zhang 1010547795f9SHong Zhang /* copy x into the vec slvec0 */ 1011547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10126de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1013547795f9SHong Zhang 1014547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1015547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 10166de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1017547795f9SHong Zhang 1018547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1019547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1020547795f9SHong Zhang /* supperdiagonal part */ 1021547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1022547795f9SHong Zhang PetscFunctionReturn(0); 1023547795f9SHong Zhang } 1024547795f9SHong Zhang 1025547795f9SHong Zhang #undef __FUNCT__ 1026a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 1027dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1028a9d4b620SHong Zhang { 1029a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1030dfbe8321SBarry Smith PetscErrorCode ierr; 1031d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1032d9ca1df4SBarry Smith PetscScalar *from; 1033d9ca1df4SBarry Smith const PetscScalar *x; 1034a9d4b620SHong Zhang 1035a9d4b620SHong Zhang PetscFunctionBegin; 1036a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1037e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1038a9d4b620SHong Zhang 1039a9d4b620SHong Zhang /* diagonal part */ 1040a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1041fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1042a9d4b620SHong Zhang 1043a9d4b620SHong Zhang /* subdiagonal part */ 1044a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1045fc165ae2SBarry Smith 1046a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10471ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1048d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1049a9d4b620SHong Zhang 1050fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1051fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1052d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1053fc165ae2SBarry Smith 1054fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1055ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1056a9d4b620SHong Zhang /* supperdiagonal part */ 1057a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1058a9d4b620SHong Zhang PetscFunctionReturn(0); 1059a9d4b620SHong Zhang } 1060a9d4b620SHong Zhang 1061a9d4b620SHong Zhang #undef __FUNCT__ 106240781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 1063dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1064a30f8f8cSSatish Balay { 1065a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1066dfbe8321SBarry Smith PetscErrorCode ierr; 10671302d50aSBarry Smith PetscInt nt; 1068a30f8f8cSSatish Balay 1069a30f8f8cSSatish Balay PetscFunctionBegin; 1070a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1071e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1072e7e72b3dSBarry Smith 1073a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1074e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 107565d70643SHong Zhang 1076ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1077b941877fSHong Zhang /* do diagonal part */ 1078b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1079b941877fSHong Zhang /* do supperdiagonal part */ 1080ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1081b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1082b941877fSHong Zhang /* do subdiagonal part */ 1083b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1084ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1085ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1086a30f8f8cSSatish Balay PetscFunctionReturn(0); 1087a30f8f8cSSatish Balay } 1088a30f8f8cSSatish Balay 10894a2ae208SSatish Balay #undef __FUNCT__ 10904a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1091dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1092a30f8f8cSSatish Balay { 1093de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1094dfbe8321SBarry Smith PetscErrorCode ierr; 1095d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1096d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1097d9ca1df4SBarry Smith const PetscScalar *x; 1098a9d4b620SHong Zhang 1099a9d4b620SHong Zhang PetscFunctionBegin; 1100a9d4b620SHong Zhang /* 1101ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 11020ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1103a9d4b620SHong Zhang */ 1104a9d4b620SHong Zhang /* diagonal part */ 1105a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11062dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1107a9d4b620SHong Zhang 1108a9d4b620SHong Zhang /* subdiagonal part */ 1109a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1110a9d4b620SHong Zhang 1111a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11121ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1113d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1114a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 11151ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1116a9d4b620SHong Zhang 1117ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1118d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1119ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1120a9d4b620SHong Zhang 1121a9d4b620SHong Zhang /* supperdiagonal part */ 1122a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1123a9d4b620SHong Zhang PetscFunctionReturn(0); 1124a9d4b620SHong Zhang } 1125a9d4b620SHong Zhang 1126a9d4b620SHong Zhang #undef __FUNCT__ 1127a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1128dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1129a9d4b620SHong Zhang { 1130a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1131dfbe8321SBarry Smith PetscErrorCode ierr; 1132a30f8f8cSSatish Balay 1133a30f8f8cSSatish Balay PetscFunctionBegin; 1134ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1135b941877fSHong Zhang /* do diagonal part */ 1136b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1137b941877fSHong Zhang /* do supperdiagonal part */ 1138ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1139de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1140de8b6608SHong Zhang 1141b941877fSHong Zhang /* do subdiagonal part */ 1142a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1143ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1144ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1145a30f8f8cSSatish Balay PetscFunctionReturn(0); 1146a30f8f8cSSatish Balay } 1147a30f8f8cSSatish Balay 1148a30f8f8cSSatish Balay /* 1149a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1150a30f8f8cSSatish Balay diagonal block 1151a30f8f8cSSatish Balay */ 11524a2ae208SSatish Balay #undef __FUNCT__ 11534a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1154dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1155a30f8f8cSSatish Balay { 1156a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1157dfbe8321SBarry Smith PetscErrorCode ierr; 1158a30f8f8cSSatish Balay 1159a30f8f8cSSatish Balay PetscFunctionBegin; 1160e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1161a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1162a30f8f8cSSatish Balay PetscFunctionReturn(0); 1163a30f8f8cSSatish Balay } 1164a30f8f8cSSatish Balay 11654a2ae208SSatish Balay #undef __FUNCT__ 11664a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1167f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1168a30f8f8cSSatish Balay { 1169a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1170dfbe8321SBarry Smith PetscErrorCode ierr; 1171a30f8f8cSSatish Balay 1172a30f8f8cSSatish Balay PetscFunctionBegin; 1173f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1174f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1175a30f8f8cSSatish Balay PetscFunctionReturn(0); 1176a30f8f8cSSatish Balay } 1177a30f8f8cSSatish Balay 11784a2ae208SSatish Balay #undef __FUNCT__ 11794a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11801302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1181a30f8f8cSSatish Balay { 1182d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1183d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1184d0d4cfc2SHong Zhang PetscErrorCode ierr; 1185d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1186d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1187899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1188d0d4cfc2SHong Zhang 1189a30f8f8cSSatish Balay PetscFunctionBegin; 1190e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1191d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1192d0d4cfc2SHong Zhang 1193d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1194d0d4cfc2SHong Zhang /* 1195d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1196d0d4cfc2SHong Zhang */ 1197d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1198d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1199d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1200d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1201d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 120226fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1203d0d4cfc2SHong Zhang } 1204dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1205d0d4cfc2SHong Zhang } 1206d0d4cfc2SHong Zhang 1207e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1208d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1209d0d4cfc2SHong Zhang 1210d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1211d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1212d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1213d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1214d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1215d0d4cfc2SHong Zhang nztot = nzA + nzB; 1216d0d4cfc2SHong Zhang 1217d0d4cfc2SHong Zhang cmap = mat->garray; 1218d0d4cfc2SHong Zhang if (v || idx) { 1219d0d4cfc2SHong Zhang if (nztot) { 1220d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1221d0d4cfc2SHong Zhang PetscInt imark = -1; 1222d0d4cfc2SHong Zhang if (v) { 1223d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1224d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1225d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1226d0d4cfc2SHong Zhang else break; 1227d0d4cfc2SHong Zhang } 1228d0d4cfc2SHong Zhang imark = i; 1229d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1230d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1231d0d4cfc2SHong Zhang } 1232d0d4cfc2SHong Zhang if (idx) { 1233d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1234d0d4cfc2SHong Zhang if (imark > -1) { 1235d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1236d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1237d0d4cfc2SHong Zhang } 1238d0d4cfc2SHong Zhang } else { 1239d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 124026fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1241d0d4cfc2SHong Zhang else break; 1242d0d4cfc2SHong Zhang } 1243d0d4cfc2SHong Zhang imark = i; 1244d0d4cfc2SHong Zhang } 1245d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1246d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1247d0d4cfc2SHong Zhang } 1248d0d4cfc2SHong Zhang } else { 1249d0d4cfc2SHong Zhang if (idx) *idx = 0; 1250d0d4cfc2SHong Zhang if (v) *v = 0; 1251d0d4cfc2SHong Zhang } 1252d0d4cfc2SHong Zhang } 1253d0d4cfc2SHong Zhang *nz = nztot; 1254d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1255d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1256a30f8f8cSSatish Balay PetscFunctionReturn(0); 1257a30f8f8cSSatish Balay } 1258a30f8f8cSSatish Balay 12594a2ae208SSatish Balay #undef __FUNCT__ 12604a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 12611302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1262a30f8f8cSSatish Balay { 1263a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1264a30f8f8cSSatish Balay 1265a30f8f8cSSatish Balay PetscFunctionBegin; 1266e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1267a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1268a30f8f8cSSatish Balay PetscFunctionReturn(0); 1269a30f8f8cSSatish Balay } 1270a30f8f8cSSatish Balay 12714a2ae208SSatish Balay #undef __FUNCT__ 1272d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1273d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1274d0d4cfc2SHong Zhang { 1275d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1276d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1277d0d4cfc2SHong Zhang 1278d0d4cfc2SHong Zhang PetscFunctionBegin; 1279d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1280d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1281d0d4cfc2SHong Zhang } 1282d0d4cfc2SHong Zhang #undef __FUNCT__ 1283d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1284d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1285d0d4cfc2SHong Zhang { 1286d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1287d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1288d0d4cfc2SHong Zhang 1289d0d4cfc2SHong Zhang PetscFunctionBegin; 1290d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1291d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1292d0d4cfc2SHong Zhang } 1293d0d4cfc2SHong Zhang 1294d0d4cfc2SHong Zhang #undef __FUNCT__ 129599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 129699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 129799cafbc1SBarry Smith { 129899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 129999cafbc1SBarry Smith PetscErrorCode ierr; 130099cafbc1SBarry Smith 130199cafbc1SBarry Smith PetscFunctionBegin; 130299cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 130399cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 130499cafbc1SBarry Smith PetscFunctionReturn(0); 130599cafbc1SBarry Smith } 130699cafbc1SBarry Smith 130799cafbc1SBarry Smith #undef __FUNCT__ 130899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 130999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 131099cafbc1SBarry Smith { 131199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 131299cafbc1SBarry Smith PetscErrorCode ierr; 131399cafbc1SBarry Smith 131499cafbc1SBarry Smith PetscFunctionBegin; 131599cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 131699cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 131799cafbc1SBarry Smith PetscFunctionReturn(0); 131899cafbc1SBarry Smith } 131999cafbc1SBarry Smith 132036032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 132136032a97SHong Zhang Input: isrow - distributed(parallel), 132236032a97SHong Zhang iscol_local - locally owned (seq) 132336032a97SHong Zhang */ 132499cafbc1SBarry Smith #undef __FUNCT__ 132536032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 132636032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13278f46ffcaSHong Zhang { 13288f46ffcaSHong Zhang PetscErrorCode ierr; 13298f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13308f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 133136032a97SHong Zhang 133236032a97SHong Zhang PetscFunctionBegin; 13338f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13348f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13351098a8e8SHong Zhang if (sz1 > sz2) { 13361098a8e8SHong Zhang *flg = PETSC_FALSE; 13371098a8e8SHong Zhang PetscFunctionReturn(0); 13381098a8e8SHong Zhang } 13398f46ffcaSHong Zhang 13408f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 13418f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13428f46ffcaSHong Zhang 13438f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 13448f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 13458f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 13468f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 13478f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 13488f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 13498f46ffcaSHong Zhang 13508f46ffcaSHong Zhang nmatch=0; 13518f46ffcaSHong Zhang k = 0; 13528f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 13538f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 13548f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13558f46ffcaSHong Zhang k = j; nmatch++; 13568f46ffcaSHong Zhang break; 13578f46ffcaSHong Zhang } 13588f46ffcaSHong Zhang } 13598f46ffcaSHong Zhang } 13608f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 13618f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13628f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 13638f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 13641098a8e8SHong Zhang if (nmatch < sz1) { 13651098a8e8SHong Zhang *flg = PETSC_FALSE; 13661098a8e8SHong Zhang } else { 13671098a8e8SHong Zhang *flg = PETSC_TRUE; 13681098a8e8SHong Zhang } 136936032a97SHong Zhang PetscFunctionReturn(0); 13708f46ffcaSHong Zhang } 137136032a97SHong Zhang 137236032a97SHong Zhang #undef __FUNCT__ 137336032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 137436032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 137536032a97SHong Zhang { 137636032a97SHong Zhang PetscErrorCode ierr; 137736032a97SHong Zhang IS iscol_local; 137836032a97SHong Zhang PetscInt csize; 137936032a97SHong Zhang PetscBool isequal; 138036032a97SHong Zhang 138136032a97SHong Zhang PetscFunctionBegin; 138236032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 138336032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 138436032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 138536032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 138636032a97SHong Zhang } else { 138736032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 138836032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 138936032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 13908f46ffcaSHong Zhang } 13918f46ffcaSHong Zhang 13928f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 139336032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 13948f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 13958f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 13968f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 13978f46ffcaSHong Zhang } 13988f46ffcaSHong Zhang PetscFunctionReturn(0); 13998f46ffcaSHong Zhang } 14008f46ffcaSHong Zhang 14018f46ffcaSHong Zhang #undef __FUNCT__ 14024a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1403dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1404a30f8f8cSSatish Balay { 1405a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1406dfbe8321SBarry Smith PetscErrorCode ierr; 1407a30f8f8cSSatish Balay 1408a30f8f8cSSatish Balay PetscFunctionBegin; 1409a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1410a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1411a30f8f8cSSatish Balay PetscFunctionReturn(0); 1412a30f8f8cSSatish Balay } 1413a30f8f8cSSatish Balay 14144a2ae208SSatish Balay #undef __FUNCT__ 14154a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1416dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1417a30f8f8cSSatish Balay { 1418a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1419a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1420dfbe8321SBarry Smith PetscErrorCode ierr; 1421a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1422a30f8f8cSSatish Balay 1423a30f8f8cSSatish Balay PetscFunctionBegin; 1424d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 142526fbe8dcSKarl Rupp 1426a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 142726fbe8dcSKarl Rupp 1428a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1429a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 143026fbe8dcSKarl Rupp 1431a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 143226fbe8dcSKarl Rupp 1433a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1434a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1435a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1436a30f8f8cSSatish Balay info->nz_used = isend[0]; 1437a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1438a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1439a30f8f8cSSatish Balay info->memory = isend[3]; 1440a30f8f8cSSatish Balay info->mallocs = isend[4]; 1441a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1442ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 144326fbe8dcSKarl Rupp 1444a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1445a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1446a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1447a30f8f8cSSatish Balay info->memory = irecv[3]; 1448a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1449a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1450ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 145126fbe8dcSKarl Rupp 1452a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1453a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1454a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1455a30f8f8cSSatish Balay info->memory = irecv[3]; 1456a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1457f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1458a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1459a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1460a30f8f8cSSatish Balay info->factor_mallocs = 0; 1461a30f8f8cSSatish Balay PetscFunctionReturn(0); 1462a30f8f8cSSatish Balay } 1463a30f8f8cSSatish Balay 14644a2ae208SSatish Balay #undef __FUNCT__ 14654a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1466ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1467a30f8f8cSSatish Balay { 1468a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1469d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1470dfbe8321SBarry Smith PetscErrorCode ierr; 1471a30f8f8cSSatish Balay 1472a30f8f8cSSatish Balay PetscFunctionBegin; 1473e98b92d7SKris Buschelman switch (op) { 1474512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1475e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1477a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1478e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14794e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14804e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1481e98b92d7SKris Buschelman break; 1482e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 14834e0d8c25SBarry Smith a->roworiented = flg; 148426fbe8dcSKarl Rupp 14854e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14864e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1487e98b92d7SKris Buschelman break; 14884e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1489290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1490e98b92d7SKris Buschelman break; 1491e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14924e0d8c25SBarry Smith a->donotstash = flg; 1493e98b92d7SKris Buschelman break; 1494e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 14954e0d8c25SBarry Smith a->ht_flag = flg; 1496e98b92d7SKris Buschelman break; 14979a4540c5SBarry Smith case MAT_HERMITIAN: 1498e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1499eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 150026fbe8dcSKarl Rupp 1501547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1502eeffb40dSHong Zhang break; 1503ffa07934SHong Zhang case MAT_SPD: 1504ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1505ffa07934SHong Zhang A->spd = flg; 1506ffa07934SHong Zhang if (flg) { 1507ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1508ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1509ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1510ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1511ffa07934SHong Zhang } 1512ffa07934SHong Zhang break; 151377e54ba9SKris Buschelman case MAT_SYMMETRIC: 1514eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1515eeffb40dSHong Zhang break; 151677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1517eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1518eeffb40dSHong Zhang break; 15199a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1520e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1521290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 152277e54ba9SKris Buschelman break; 1523d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15244e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1525d0d4cfc2SHong Zhang break; 1526d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15274e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1528d0d4cfc2SHong Zhang break; 1529d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15304e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1531d0d4cfc2SHong Zhang break; 1532e98b92d7SKris Buschelman default: 1533e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1534a30f8f8cSSatish Balay } 1535a30f8f8cSSatish Balay PetscFunctionReturn(0); 1536a30f8f8cSSatish Balay } 1537a30f8f8cSSatish Balay 15384a2ae208SSatish Balay #undef __FUNCT__ 15398115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1540fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1541a30f8f8cSSatish Balay { 1542dfbe8321SBarry Smith PetscErrorCode ierr; 15436e111a19SKarl Rupp 1544a30f8f8cSSatish Balay PetscFunctionBegin; 1545815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1546999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1547fc4dec0aSBarry Smith } 15488115998fSBarry Smith PetscFunctionReturn(0); 1549a30f8f8cSSatish Balay } 1550a30f8f8cSSatish Balay 15514a2ae208SSatish Balay #undef __FUNCT__ 15524a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1553dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1554a30f8f8cSSatish Balay { 1555a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1556a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1557dfbe8321SBarry Smith PetscErrorCode ierr; 15585e90f9d9SHong Zhang PetscInt nv,m,n; 1559ace3abfcSBarry Smith PetscBool flg; 1560a30f8f8cSSatish Balay 1561a30f8f8cSSatish Balay PetscFunctionBegin; 1562a30f8f8cSSatish Balay if (ll != rr) { 1563b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1564e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1565a30f8f8cSSatish Balay } 1566b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1567b3bf805bSHong Zhang 15685e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1569e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1570b3bf805bSHong Zhang 15715e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1572e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 15735e90f9d9SHong Zhang 1574ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15755e90f9d9SHong Zhang 15765e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 15770298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 15785e90f9d9SHong Zhang 15795e90f9d9SHong Zhang /* scale the diagonal part */ 1580a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1581a30f8f8cSSatish Balay 15825e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1583ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15840298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1585a30f8f8cSSatish Balay PetscFunctionReturn(0); 1586a30f8f8cSSatish Balay } 1587a30f8f8cSSatish Balay 15884a2ae208SSatish Balay #undef __FUNCT__ 15894a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1590dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1591a30f8f8cSSatish Balay { 1592f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1593dfbe8321SBarry Smith PetscErrorCode ierr; 1594a30f8f8cSSatish Balay 1595a30f8f8cSSatish Balay PetscFunctionBegin; 1596a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1597a30f8f8cSSatish Balay PetscFunctionReturn(0); 1598a30f8f8cSSatish Balay } 1599a30f8f8cSSatish Balay 16006849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1601a30f8f8cSSatish Balay 16024a2ae208SSatish Balay #undef __FUNCT__ 16034a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1604ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1605a30f8f8cSSatish Balay { 1606a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1607a30f8f8cSSatish Balay Mat a,b,c,d; 1608ace3abfcSBarry Smith PetscBool flg; 1609dfbe8321SBarry Smith PetscErrorCode ierr; 1610a30f8f8cSSatish Balay 1611a30f8f8cSSatish Balay PetscFunctionBegin; 1612a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1613a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1614a30f8f8cSSatish Balay 1615a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1616abc0a331SBarry Smith if (flg) { 1617a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1618a30f8f8cSSatish Balay } 1619ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1620a30f8f8cSSatish Balay PetscFunctionReturn(0); 1621a30f8f8cSSatish Balay } 1622a30f8f8cSSatish Balay 16234a2ae208SSatish Balay #undef __FUNCT__ 16243c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 16253c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16263c896bc6SHong Zhang { 16273c896bc6SHong Zhang PetscErrorCode ierr; 16283c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16293c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16303c896bc6SHong Zhang 16313c896bc6SHong Zhang PetscFunctionBegin; 16323c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16333c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1634d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16353c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1636d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16373c896bc6SHong Zhang } else { 16383c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16393c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 16403c896bc6SHong Zhang } 16413c896bc6SHong Zhang PetscFunctionReturn(0); 16423c896bc6SHong Zhang } 16433c896bc6SHong Zhang 16443c896bc6SHong Zhang #undef __FUNCT__ 16454994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 16464994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1647273d9f13SBarry Smith { 1648dfbe8321SBarry Smith PetscErrorCode ierr; 1649273d9f13SBarry Smith 1650273d9f13SBarry Smith PetscFunctionBegin; 1651535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1652273d9f13SBarry Smith PetscFunctionReturn(0); 1653273d9f13SBarry Smith } 1654a5e6ed63SBarry Smith 16554fe895cdSHong Zhang #undef __FUNCT__ 16564fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 16574fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16584fe895cdSHong Zhang { 16594fe895cdSHong Zhang PetscErrorCode ierr; 16604fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16614fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16624fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16634fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16644fe895cdSHong Zhang 16654fe895cdSHong Zhang PetscFunctionBegin; 16664fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16674fe895cdSHong Zhang PetscScalar alpha = a; 16684fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 16694fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1670c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 16718b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 16724fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 16734fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1674c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 16758b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1676a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1677ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1678ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1679ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1680ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 16814fe895cdSHong Zhang } else { 16824de5dceeSHong Zhang Mat B; 16834de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 16844de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1685d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 16864de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 16874de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 16884de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 16894de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 16904de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 16914de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 16924de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 16934de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 16944de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 16954de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 16964de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 16974de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 16984de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 16994de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 17004de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1701d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 17024de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 17034fe895cdSHong Zhang } 17044fe895cdSHong Zhang PetscFunctionReturn(0); 17054fe895cdSHong Zhang } 17064fe895cdSHong Zhang 1707a5e6ed63SBarry Smith #undef __FUNCT__ 1708a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 17091302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1710a5e6ed63SBarry Smith { 17116849ba73SBarry Smith PetscErrorCode ierr; 17121302d50aSBarry Smith PetscInt i; 171368906dc2SToby Isaac PetscBool flg,sorted; 1714a5e6ed63SBarry Smith 17156849ba73SBarry Smith PetscFunctionBegin; 171668906dc2SToby Isaac for (i = 0; i < n; i++) { 171768906dc2SToby Isaac ierr = ISSorted(irow[i],&sorted);CHKERRQ(ierr); 171868906dc2SToby Isaac if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Row index set %d not sorted",i); 171968906dc2SToby Isaac ierr = ISSorted(icol[i],&sorted);CHKERRQ(ierr); 172068906dc2SToby Isaac if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Column index set %d not sorted",i); 172168906dc2SToby Isaac } 17224dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1723a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1724a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 17254dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 17264dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1727a5e6ed63SBarry Smith } 17284dcd73b1SHong Zhang } 1729a5e6ed63SBarry Smith PetscFunctionReturn(0); 1730a5e6ed63SBarry Smith } 1731a5e6ed63SBarry Smith 17327d68702bSBarry Smith #undef __FUNCT__ 17337d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ" 17347d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17357d68702bSBarry Smith { 17367d68702bSBarry Smith PetscErrorCode ierr; 17377d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17387d68702bSBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data,*bij = (Mat_SeqSBAIJ*)maij->B->data; 17397d68702bSBarry Smith 17407d68702bSBarry Smith PetscFunctionBegin; 17417d68702bSBarry Smith if (!aij->nz && !bij->nz) { 17427d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 17437d68702bSBarry Smith } 17447d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 17457d68702bSBarry Smith PetscFunctionReturn(0); 17467d68702bSBarry Smith } 17477d68702bSBarry Smith 1748a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17493964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1750a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1751a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1752a9d4b620SHong Zhang MatMult_MPISBAIJ, 175397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1754431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1755431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1756a30f8f8cSSatish Balay 0, 1757a30f8f8cSSatish Balay 0, 1758a30f8f8cSSatish Balay 0, 175997304618SKris Buschelman /* 10*/ 0, 1760a30f8f8cSSatish Balay 0, 1761a30f8f8cSSatish Balay 0, 176241f059aeSBarry Smith MatSOR_MPISBAIJ, 1763a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 176497304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1765a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1766a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1767a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1768a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 176997304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1770a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1771a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1772a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1773d519adbfSMatthew Knepley /* 24*/ 0, 1774a30f8f8cSSatish Balay 0, 1775a30f8f8cSSatish Balay 0, 1776a30f8f8cSSatish Balay 0, 1777a30f8f8cSSatish Balay 0, 17784994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1779b5df2d14SHong Zhang 0, 1780a30f8f8cSSatish Balay 0, 1781a30f8f8cSSatish Balay 0, 1782a30f8f8cSSatish Balay 0, 1783d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1784a30f8f8cSSatish Balay 0, 1785a30f8f8cSSatish Balay 0, 1786a30f8f8cSSatish Balay 0, 1787a30f8f8cSSatish Balay 0, 1788d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1789a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1790d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1791a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 17923c896bc6SHong Zhang MatCopy_MPISBAIJ, 1793d519adbfSMatthew Knepley /* 44*/ 0, 1794a30f8f8cSSatish Balay MatScale_MPISBAIJ, 17957d68702bSBarry Smith MatShift_MPISBAIJ, 1796a30f8f8cSSatish Balay 0, 1797a30f8f8cSSatish Balay 0, 1798f73d5cc4SBarry Smith /* 49*/ 0, 1799a30f8f8cSSatish Balay 0, 1800a30f8f8cSSatish Balay 0, 1801a30f8f8cSSatish Balay 0, 1802a30f8f8cSSatish Balay 0, 1803d519adbfSMatthew Knepley /* 54*/ 0, 1804a30f8f8cSSatish Balay 0, 1805a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1806a30f8f8cSSatish Balay 0, 1807a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18088f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 1809a30f8f8cSSatish Balay 0, 1810a30f8f8cSSatish Balay 0, 1811357abbc8SBarry Smith 0, 181224d5174aSHong Zhang 0, 1813d519adbfSMatthew Knepley /* 64*/ 0, 181424d5174aSHong Zhang 0, 181524d5174aSHong Zhang 0, 181624d5174aSHong Zhang 0, 181724d5174aSHong Zhang 0, 1818d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 181924d5174aSHong Zhang 0, 182097304618SKris Buschelman 0, 182197304618SKris Buschelman 0, 182297304618SKris Buschelman 0, 1823d519adbfSMatthew Knepley /* 74*/ 0, 182497304618SKris Buschelman 0, 182597304618SKris Buschelman 0, 182697304618SKris Buschelman 0, 182797304618SKris Buschelman 0, 1828d519adbfSMatthew Knepley /* 79*/ 0, 182997304618SKris Buschelman 0, 183097304618SKris Buschelman 0, 183197304618SKris Buschelman 0, 18325bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1833d519adbfSMatthew Knepley /* 84*/ 0, 1834865e5f61SKris Buschelman 0, 1835865e5f61SKris Buschelman 0, 1836865e5f61SKris Buschelman 0, 1837865e5f61SKris Buschelman 0, 1838d519adbfSMatthew Knepley /* 89*/ 0, 1839865e5f61SKris Buschelman 0, 1840865e5f61SKris Buschelman 0, 1841865e5f61SKris Buschelman 0, 1842865e5f61SKris Buschelman 0, 1843d519adbfSMatthew Knepley /* 94*/ 0, 1844865e5f61SKris Buschelman 0, 1845865e5f61SKris Buschelman 0, 184699cafbc1SBarry Smith 0, 184799cafbc1SBarry Smith 0, 1848d519adbfSMatthew Knepley /* 99*/ 0, 184999cafbc1SBarry Smith 0, 185099cafbc1SBarry Smith 0, 185199cafbc1SBarry Smith 0, 185299cafbc1SBarry Smith 0, 1853d519adbfSMatthew Knepley /*104*/ 0, 185499cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1855d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1856d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 185795936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 185895936485SShri Abhyankar /*109*/ 0, 185995936485SShri Abhyankar 0, 186095936485SShri Abhyankar 0, 186195936485SShri Abhyankar 0, 186295936485SShri Abhyankar 0, 186395936485SShri Abhyankar /*114*/ 0, 186495936485SShri Abhyankar 0, 186595936485SShri Abhyankar 0, 186695936485SShri Abhyankar 0, 186795936485SShri Abhyankar 0, 186895936485SShri Abhyankar /*119*/ 0, 186995936485SShri Abhyankar 0, 187095936485SShri Abhyankar 0, 18713964eb88SJed Brown 0, 18723964eb88SJed Brown 0, 18733964eb88SJed Brown /*124*/ 0, 18743964eb88SJed Brown 0, 18753964eb88SJed Brown 0, 18763964eb88SJed Brown 0, 18773964eb88SJed Brown 0, 18783964eb88SJed Brown /*129*/ 0, 18793964eb88SJed Brown 0, 18803964eb88SJed Brown 0, 18813964eb88SJed Brown 0, 18823964eb88SJed Brown 0, 18833964eb88SJed Brown /*134*/ 0, 18843964eb88SJed Brown 0, 18853964eb88SJed Brown 0, 18863964eb88SJed Brown 0, 18873964eb88SJed Brown 0, 18883964eb88SJed Brown /*139*/ 0, 1889f9426fe0SMark Adams 0, 189059f5e6ceSHong Zhang 0, 189159f5e6ceSHong Zhang 0, 189259f5e6ceSHong Zhang 0, 189359f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 189499cafbc1SBarry Smith }; 1895a30f8f8cSSatish Balay 18964a2ae208SSatish Balay #undef __FUNCT__ 18974a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 189811bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1899a30f8f8cSSatish Balay { 1900a30f8f8cSSatish Balay PetscFunctionBegin; 1901a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1902a30f8f8cSSatish Balay PetscFunctionReturn(0); 1903a30f8f8cSSatish Balay } 1904a30f8f8cSSatish Balay 19054a2ae208SSatish Balay #undef __FUNCT__ 1906a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1907b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1908a23d5eceSKris Buschelman { 1909a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1910dfbe8321SBarry Smith PetscErrorCode ierr; 1911535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1912a23d5eceSKris Buschelman 1913a23d5eceSKris Buschelman PetscFunctionBegin; 191433d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 191526283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 191626283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1917e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1918899cda47SBarry Smith 1919a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1920d0f46423SBarry Smith mbs = B->rmap->n/bs; 1921d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1922c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1923a23d5eceSKris Buschelman 1924d0f46423SBarry Smith B->rmap->bs = bs; 1925a23d5eceSKris Buschelman b->bs2 = bs*bs; 1926a23d5eceSKris Buschelman b->mbs = mbs; 1927a23d5eceSKris Buschelman b->Mbs = Mbs; 1928de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1929de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1930a23d5eceSKris Buschelman 1931a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1932d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1933a23d5eceSKris Buschelman } 1934d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1935d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1936a23d5eceSKris Buschelman 1937d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1938d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1939a23d5eceSKris Buschelman 1940526dfc15SBarry Smith if (!B->preallocated) { 1941f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1942d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 19439c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 19443bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1945f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1946d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 19474aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 19483bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1949ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1950526dfc15SBarry Smith } 1951a23d5eceSKris Buschelman 1952526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1953526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 195426fbe8dcSKarl Rupp 1955526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1956a23d5eceSKris Buschelman PetscFunctionReturn(0); 1957a23d5eceSKris Buschelman } 1958a23d5eceSKris Buschelman 1959dfb205c3SBarry Smith #undef __FUNCT__ 1960dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1961dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1962dfb205c3SBarry Smith { 1963dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1964dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1965dfb205c3SBarry Smith const PetscInt *JJ =0; 1966dfb205c3SBarry Smith PetscScalar *values=0; 1967dfb205c3SBarry Smith PetscErrorCode ierr; 1968dfb205c3SBarry Smith 1969dfb205c3SBarry Smith PetscFunctionBegin; 1970ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1971dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1972dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1973dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1974dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1975e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1976dfb205c3SBarry Smith m = B->rmap->n/bs; 1977dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1978dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1979dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1980dfb205c3SBarry Smith 1981dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1982dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1983dfb205c3SBarry Smith for (i=0; i<m; i++) { 1984dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1985dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1986dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1987dfb205c3SBarry Smith JJ = jj + ii[i]; 1988dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1989dfb205c3SBarry Smith if (*JJ >= cstart) break; 1990dfb205c3SBarry Smith JJ++; 1991dfb205c3SBarry Smith } 1992dfb205c3SBarry Smith d = 0; 1993dfb205c3SBarry Smith for (; j<nz; j++) { 1994dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1995dfb205c3SBarry Smith d++; 1996dfb205c3SBarry Smith } 1997dfb205c3SBarry Smith d_nnz[i] = d; 1998dfb205c3SBarry Smith o_nnz[i] = nz - d; 1999dfb205c3SBarry Smith } 2000dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2001dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2002dfb205c3SBarry Smith 2003dfb205c3SBarry Smith values = (PetscScalar*)V; 2004dfb205c3SBarry Smith if (!values) { 2005785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2006dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2007dfb205c3SBarry Smith } 2008dfb205c3SBarry Smith for (i=0; i<m; i++) { 2009dfb205c3SBarry Smith PetscInt row = i + rstart; 2010dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2011dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2012dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2013dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2014dfb205c3SBarry Smith } 2015dfb205c3SBarry Smith 2016dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2017dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2018dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20197827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2020dfb205c3SBarry Smith PetscFunctionReturn(0); 2021dfb205c3SBarry Smith } 2022dfb205c3SBarry Smith 20230bad9183SKris Buschelman /*MC 2024fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2025828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2026828413b8SBarry Smith the matrix is stored. 2027828413b8SBarry Smith 2028828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2029828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20300bad9183SKris Buschelman 20310bad9183SKris Buschelman Options Database Keys: 20320bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 20330bad9183SKris Buschelman 20340bad9183SKris Buschelman Level: beginner 20350bad9183SKris Buschelman 20360bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 20370bad9183SKris Buschelman M*/ 20380bad9183SKris Buschelman 20398cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 2040aa5a9175SDahai Guo 2041a23d5eceSKris Buschelman #undef __FUNCT__ 20424a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 20438cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2044b5df2d14SHong Zhang { 2045b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2046dfbe8321SBarry Smith PetscErrorCode ierr; 204794ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2048b5df2d14SHong Zhang 2049b5df2d14SHong Zhang PetscFunctionBegin; 2050b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2051b0a32e0cSBarry Smith B->data = (void*)b; 2052b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2053b5df2d14SHong Zhang 2054b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2055b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2056b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2057b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 205826fbe8dcSKarl Rupp 2059ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2060ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2061b5df2d14SHong Zhang 2062b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2063854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2064b5df2d14SHong Zhang 2065b5df2d14SHong Zhang /* build cache for off array entries formed */ 2066ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 206726fbe8dcSKarl Rupp 2068b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 20690298fd71SBarry Smith b->colmap = NULL; 20700298fd71SBarry Smith b->garray = NULL; 2071b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2072b5df2d14SHong Zhang 2073b5df2d14SHong Zhang /* stuff used in block assembly */ 2074b5df2d14SHong Zhang b->barray = 0; 2075b5df2d14SHong Zhang 2076b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2077b5df2d14SHong Zhang b->lvec = 0; 2078b5df2d14SHong Zhang b->Mvctx = 0; 207940781036SHong Zhang b->slvec0 = 0; 208040781036SHong Zhang b->slvec0b = 0; 208140781036SHong Zhang b->slvec1 = 0; 208240781036SHong Zhang b->slvec1a = 0; 208340781036SHong Zhang b->slvec1b = 0; 208440781036SHong Zhang b->sMvctx = 0; 2085b5df2d14SHong Zhang 2086b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2087b5df2d14SHong Zhang b->rowindices = 0; 2088b5df2d14SHong Zhang b->rowvalues = 0; 2089b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2090b5df2d14SHong Zhang 2091b5df2d14SHong Zhang /* hash table stuff */ 2092b5df2d14SHong Zhang b->ht = 0; 2093b5df2d14SHong Zhang b->hd = 0; 2094b5df2d14SHong Zhang b->ht_size = 0; 2095b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2096b5df2d14SHong Zhang b->ht_fact = 0; 2097b5df2d14SHong Zhang b->ht_total_ct = 0; 2098b5df2d14SHong Zhang b->ht_insert_ct = 0; 2099b5df2d14SHong Zhang 21007a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 21017a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21027a868f3eSHong Zhang 210359ffdab8SBarry Smith b->in_loc = 0; 210459ffdab8SBarry Smith b->v_loc = 0; 210559ffdab8SBarry Smith b->n_loc = 0; 210694ae4db5SBarry Smith 2107bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2108bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2109bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 2110bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2111bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 2112bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 21136214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21146214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 21156214f412SHong Zhang #endif 2116aa5a9175SDahai Guo 211723ce1328SBarry Smith B->symmetric = PETSC_TRUE; 211823ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 211923ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 212023ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 212126fbe8dcSKarl Rupp 212217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 212394ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 212494ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 212594ae4db5SBarry Smith if (flg) { 212694ae4db5SBarry Smith PetscReal fact = 1.39; 212794ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 212894ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 212994ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 213094ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 213194ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 213294ae4db5SBarry Smith } 213394ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2134b5df2d14SHong Zhang PetscFunctionReturn(0); 2135b5df2d14SHong Zhang } 2136b5df2d14SHong Zhang 2137209238afSKris Buschelman /*MC 2138002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2139209238afSKris Buschelman 2140209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2141209238afSKris Buschelman and MATMPISBAIJ otherwise. 2142209238afSKris Buschelman 2143209238afSKris Buschelman Options Database Keys: 2144209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2145209238afSKris Buschelman 2146209238afSKris Buschelman Level: beginner 2147209238afSKris Buschelman 2148209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2149209238afSKris Buschelman M*/ 2150209238afSKris Buschelman 21514a2ae208SSatish Balay #undef __FUNCT__ 21524a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 2153b5df2d14SHong Zhang /*@C 2154b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2155b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2156b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2157b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2158b5df2d14SHong Zhang 2159b5df2d14SHong Zhang Collective on Mat 2160b5df2d14SHong Zhang 2161b5df2d14SHong Zhang Input Parameters: 21621c4f3114SJed Brown + B - the matrix 2163bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2164bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2165b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2166b5df2d14SHong Zhang submatrix (same for all local rows) 2167b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 21686d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 21690298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 217095742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2171b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2172b5df2d14SHong Zhang submatrix (same for all local rows). 2173b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2174c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 21750298fd71SBarry Smith (possibly different for each block row) or NULL. 2176b5df2d14SHong Zhang 2177b5df2d14SHong Zhang 2178b5df2d14SHong Zhang Options Database Keys: 2179b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2180b5df2d14SHong Zhang block calculations (much slower) 2181b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 2182b5df2d14SHong Zhang 2183b5df2d14SHong Zhang Notes: 2184b5df2d14SHong Zhang 2185b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2186b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2187b5df2d14SHong Zhang 218849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 218949a6f317SBarry Smith 2190b5df2d14SHong Zhang Storage Information: 2191b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2192b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2193b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2194b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2195b5df2d14SHong Zhang 2196b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2197b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 21980298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2199b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2200b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2201b5df2d14SHong Zhang 2202aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2203aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2204aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2205aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2206aa95bbe8SBarry Smith 2207b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2208b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2209b5df2d14SHong Zhang 2210b5df2d14SHong Zhang .vb 2211b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2212a4b1a0f6SJed Brown -------------------------- 2213c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2214c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2215c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2216a4b1a0f6SJed Brown -------------------------- 2217b5df2d14SHong Zhang .ve 2218b5df2d14SHong Zhang 2219b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2220b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22216d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22226d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2223b5df2d14SHong Zhang 22246d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22256d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2226c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2227c2fc9fa9SBarry Smith 2228b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2229b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2230b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2231b5df2d14SHong Zhang matrices. 2232b5df2d14SHong Zhang 2233b5df2d14SHong Zhang Level: intermediate 2234b5df2d14SHong Zhang 2235b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2236b5df2d14SHong Zhang 2237ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2238b5df2d14SHong Zhang @*/ 22397087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2240b5df2d14SHong Zhang { 22414ac538c5SBarry Smith PetscErrorCode ierr; 2242b5df2d14SHong Zhang 2243b5df2d14SHong Zhang PetscFunctionBegin; 22446ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22456ba663aaSJed Brown PetscValidType(B,1); 22466ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 22474ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2248b5df2d14SHong Zhang PetscFunctionReturn(0); 2249b5df2d14SHong Zhang } 2250b5df2d14SHong Zhang 22514a2ae208SSatish Balay #undef __FUNCT__ 225269b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2253a30f8f8cSSatish Balay /*@C 225469b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2255a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2256a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2257a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2258a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2259a30f8f8cSSatish Balay 2260a30f8f8cSSatish Balay Collective on MPI_Comm 2261a30f8f8cSSatish Balay 2262a30f8f8cSSatish Balay Input Parameters: 2263a30f8f8cSSatish Balay + comm - MPI communicator 2264bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2265bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2266a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2267a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2268a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2269a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2270a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2271a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2272a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2273a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2274a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2275a30f8f8cSSatish Balay submatrix (same for all local rows) 2276a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 22776d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 22780298fd71SBarry Smith (possibly different for each block block row) or NULL. 227995742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 228095742e49SBarry Smith set its value even if it is zero. 2281a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2282a30f8f8cSSatish Balay submatrix (same for all local rows). 2283a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2284a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 22850298fd71SBarry Smith each block row) or NULL. 2286a30f8f8cSSatish Balay 2287a30f8f8cSSatish Balay Output Parameter: 2288a30f8f8cSSatish Balay . A - the matrix 2289a30f8f8cSSatish Balay 2290a30f8f8cSSatish Balay Options Database Keys: 2291a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2292a30f8f8cSSatish Balay block calculations (much slower) 2293a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2294a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2295a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2296a30f8f8cSSatish Balay 2297175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2298ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2299175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2300175b88e8SBarry Smith 2301a30f8f8cSSatish Balay Notes: 2302d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23036d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2304d1be2dadSMatthew Knepley 2305a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2306a30f8f8cSSatish Balay (possibly both). 2307a30f8f8cSSatish Balay 2308a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2309a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2310a30f8f8cSSatish Balay 231149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 231249a6f317SBarry Smith 2313a30f8f8cSSatish Balay Storage Information: 2314a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2315a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2316a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2317a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2318a30f8f8cSSatish Balay 2319a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2320a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 23210298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2322a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2323a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2324a30f8f8cSSatish Balay 2325a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2326a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2327a30f8f8cSSatish Balay 2328a30f8f8cSSatish Balay .vb 2329a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2330a4b1a0f6SJed Brown -------------------------- 2331c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2332c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2333c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2334a4b1a0f6SJed Brown -------------------------- 2335a30f8f8cSSatish Balay .ve 2336a30f8f8cSSatish Balay 2337a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2338a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23396d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23406d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2341a30f8f8cSSatish Balay 23426d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23436d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2344a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2345a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2346a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2347a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2348a30f8f8cSSatish Balay matrices. 2349a30f8f8cSSatish Balay 2350a30f8f8cSSatish Balay Level: intermediate 2351a30f8f8cSSatish Balay 2352a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2353a30f8f8cSSatish Balay 235469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2355a30f8f8cSSatish Balay @*/ 2356a30f8f8cSSatish Balay 235769b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2358a30f8f8cSSatish Balay { 23596849ba73SBarry Smith PetscErrorCode ierr; 23601302d50aSBarry Smith PetscMPIInt size; 2361a30f8f8cSSatish Balay 2362a30f8f8cSSatish Balay PetscFunctionBegin; 2363f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2364f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2365273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2366273d9f13SBarry Smith if (size > 1) { 2367b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2368b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2369273d9f13SBarry Smith } else { 2370273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2371273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2372273d9f13SBarry Smith } 2373a30f8f8cSSatish Balay PetscFunctionReturn(0); 2374a30f8f8cSSatish Balay } 2375a30f8f8cSSatish Balay 2376a30f8f8cSSatish Balay 23774a2ae208SSatish Balay #undef __FUNCT__ 23784a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 23796849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2380a30f8f8cSSatish Balay { 2381a30f8f8cSSatish Balay Mat mat; 2382a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2383dfbe8321SBarry Smith PetscErrorCode ierr; 2384d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2385387bc808SHong Zhang PetscScalar *array; 2386a30f8f8cSSatish Balay 2387a30f8f8cSSatish Balay PetscFunctionBegin; 2388a30f8f8cSSatish Balay *newmat = 0; 238926fbe8dcSKarl Rupp 2390ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2391d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 23927adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 23931d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 23941e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 23951e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2396e1b6402fSHong Zhang 2397d5f3da31SBarry Smith mat->factortype = matin->factortype; 2398273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 239982327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24007fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24017fff6886SHong Zhang 2402b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2403a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2404a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2405a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2406a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2407a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2408a30f8f8cSSatish Balay 2409899cda47SBarry Smith 2410a30f8f8cSSatish Balay a->size = oldmat->size; 2411a30f8f8cSSatish Balay a->rank = oldmat->rank; 2412a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2413a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2414a30f8f8cSSatish Balay a->rowindices = 0; 2415a30f8f8cSSatish Balay a->rowvalues = 0; 2416a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2417a30f8f8cSSatish Balay a->barray = 0; 2418899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2419899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2420899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2421899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2422a30f8f8cSSatish Balay 2423a30f8f8cSSatish Balay /* hash table stuff */ 2424a30f8f8cSSatish Balay a->ht = 0; 2425a30f8f8cSSatish Balay a->hd = 0; 2426a30f8f8cSSatish Balay a->ht_size = 0; 2427a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2428a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2429a30f8f8cSSatish Balay a->ht_total_ct = 0; 2430a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2431a30f8f8cSSatish Balay 2432899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2433a30f8f8cSSatish Balay if (oldmat->colmap) { 2434a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2435a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2436a30f8f8cSSatish Balay #else 2437854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 24383bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 24391302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2440a30f8f8cSSatish Balay #endif 2441a30f8f8cSSatish Balay } else a->colmap = 0; 2442387bc808SHong Zhang 2443a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2444785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 24453bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 24461302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2447a30f8f8cSSatish Balay } else a->garray = 0; 2448a30f8f8cSSatish Balay 2449ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2450a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 24513bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2452a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 24533bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 245482327fa8SHong Zhang 245582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 24563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 245782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 24583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2459387bc808SHong Zhang 2460387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 24611ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2462778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2463778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 24641ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 24651ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2466778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 24671ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 24683bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 24693bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 24703bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 24713bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 24723bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2473387bc808SHong Zhang 2474387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2475387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2476387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 24773bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 247882327fa8SHong Zhang 2479a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 24803bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2481a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 24823bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2483140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2484a30f8f8cSSatish Balay *newmat = mat; 2485a30f8f8cSSatish Balay PetscFunctionReturn(0); 2486a30f8f8cSSatish Balay } 2487a30f8f8cSSatish Balay 24884a2ae208SSatish Balay #undef __FUNCT__ 24895bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2490112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 249195936485SShri Abhyankar { 249295936485SShri Abhyankar PetscErrorCode ierr; 249395936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 249495936485SShri Abhyankar PetscScalar *vals,*buf; 2495ce94432eSBarry Smith MPI_Comm comm; 249695936485SShri Abhyankar MPI_Status status; 2497adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2498adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 249995936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 25003059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 250195936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2502461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 250395936485SShri Abhyankar int fd; 250495936485SShri Abhyankar 250595936485SShri Abhyankar PetscFunctionBegin; 2506c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2507c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2508ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 25090298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 25100298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 251195936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 25123059b6faSBarry Smith if (bs < 0) bs = 1; 251395936485SShri Abhyankar 251495936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 251595936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 251695936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 25175872f025SBarry Smith if (!rank) { 251895936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 251995936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 252095936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 252195936485SShri Abhyankar } 252295936485SShri Abhyankar 252395936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 252426fbe8dcSKarl Rupp M = header[1]; 252526fbe8dcSKarl Rupp N = header[2]; 252695936485SShri Abhyankar 252795936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2528461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2529461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 253095936485SShri Abhyankar 253195936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 253295936485SShri Abhyankar 253395936485SShri Abhyankar /* 253495936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 253595936485SShri Abhyankar divisible by the blocksize 253695936485SShri Abhyankar */ 253795936485SShri Abhyankar Mbs = M/bs; 253895936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 253995936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 254095936485SShri Abhyankar else Mbs++; 254195936485SShri Abhyankar if (extra_rows &&!rank) { 254295936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 254395936485SShri Abhyankar } 254495936485SShri Abhyankar 254595936485SShri Abhyankar /* determine ownership of all rows */ 254695936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 254795936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 254895936485SShri Abhyankar m = mbs*bs; 254995936485SShri Abhyankar } else { /* User Set */ 255095936485SShri Abhyankar m = newmat->rmap->n; 255195936485SShri Abhyankar mbs = m/bs; 255295936485SShri Abhyankar } 2553dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 25544dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 255595936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 255695936485SShri Abhyankar rowners[0] = 0; 255795936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 255895936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 255995936485SShri Abhyankar rstart = rowners[rank]; 256095936485SShri Abhyankar rend = rowners[rank+1]; 256195936485SShri Abhyankar 256295936485SShri Abhyankar /* distribute row lengths to all processors */ 2563785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 256495936485SShri Abhyankar if (!rank) { 2565854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 256695936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 256795936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2568785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 256995936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 257095936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 257195936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 257295936485SShri Abhyankar } else { 257395936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 257495936485SShri Abhyankar } 257595936485SShri Abhyankar 257695936485SShri Abhyankar if (!rank) { /* procs[0] */ 257795936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2578785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 257995936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 258095936485SShri Abhyankar for (i=0; i<size; i++) { 258195936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 258295936485SShri Abhyankar procsnz[i] += rowlengths[j]; 258395936485SShri Abhyankar } 258495936485SShri Abhyankar } 258595936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 258695936485SShri Abhyankar 258795936485SShri Abhyankar /* determine max buffer needed and allocate it */ 258895936485SShri Abhyankar maxnz = 0; 258995936485SShri Abhyankar for (i=0; i<size; i++) { 259095936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 259195936485SShri Abhyankar } 2592785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 259395936485SShri Abhyankar 259495936485SShri Abhyankar /* read in my part of the matrix column indices */ 259595936485SShri Abhyankar nz = procsnz[0]; 2596785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 259795936485SShri Abhyankar mycols = ibuf; 259895936485SShri Abhyankar if (size == 1) nz -= extra_rows; 259995936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 260026fbe8dcSKarl Rupp if (size == 1) { 260126fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 260226fbe8dcSKarl Rupp } 260395936485SShri Abhyankar 260495936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 260595936485SShri Abhyankar for (i=1; i<size-1; i++) { 260695936485SShri Abhyankar nz = procsnz[i]; 260795936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 260895936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 260995936485SShri Abhyankar } 261095936485SShri Abhyankar /* read in the stuff for the last proc */ 261195936485SShri Abhyankar if (size != 1) { 261295936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 261395936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 261495936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 261595936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 261695936485SShri Abhyankar } 261795936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 261895936485SShri Abhyankar } else { /* procs[i], i>0 */ 261995936485SShri Abhyankar /* determine buffer space needed for message */ 262095936485SShri Abhyankar nz = 0; 262126fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2622785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 262395936485SShri Abhyankar mycols = ibuf; 262495936485SShri Abhyankar /* receive message of column indices*/ 262595936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 262695936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 262795936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 262895936485SShri Abhyankar } 262995936485SShri Abhyankar 263095936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2631dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2632dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 263395936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 263495936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 263595936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 263695936485SShri Abhyankar rowcount = 0; 263795936485SShri Abhyankar nzcount = 0; 263895936485SShri Abhyankar for (i=0; i<mbs; i++) { 263995936485SShri Abhyankar dcount = 0; 264095936485SShri Abhyankar odcount = 0; 264195936485SShri Abhyankar for (j=0; j<bs; j++) { 264295936485SShri Abhyankar kmax = locrowlens[rowcount]; 264395936485SShri Abhyankar for (k=0; k<kmax; k++) { 264495936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 264595936485SShri Abhyankar if (!mask[tmp]) { 264695936485SShri Abhyankar mask[tmp] = 1; 264795936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 264895936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 264995936485SShri Abhyankar } 265095936485SShri Abhyankar } 265195936485SShri Abhyankar rowcount++; 265295936485SShri Abhyankar } 265395936485SShri Abhyankar 265495936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 265595936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 265695936485SShri Abhyankar 265795936485SShri Abhyankar /* zero out the mask elements we set */ 265895936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 265995936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 266095936485SShri Abhyankar } 266195936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 266295936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 26636816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 266495936485SShri Abhyankar 266595936485SShri Abhyankar if (!rank) { 2666785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 266795936485SShri Abhyankar /* read in my part of the matrix numerical values */ 266895936485SShri Abhyankar nz = procsnz[0]; 266995936485SShri Abhyankar vals = buf; 267095936485SShri Abhyankar mycols = ibuf; 267195936485SShri Abhyankar if (size == 1) nz -= extra_rows; 267295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 267326fbe8dcSKarl Rupp if (size == 1) { 267426fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 267526fbe8dcSKarl Rupp } 267695936485SShri Abhyankar 267795936485SShri Abhyankar /* insert into matrix */ 267895936485SShri Abhyankar jj = rstart*bs; 267995936485SShri Abhyankar for (i=0; i<m; i++) { 268095936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 268195936485SShri Abhyankar mycols += locrowlens[i]; 268295936485SShri Abhyankar vals += locrowlens[i]; 268395936485SShri Abhyankar jj++; 268495936485SShri Abhyankar } 268595936485SShri Abhyankar 268695936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 268795936485SShri Abhyankar for (i=1; i<size-1; i++) { 268895936485SShri Abhyankar nz = procsnz[i]; 268995936485SShri Abhyankar vals = buf; 269095936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 269195936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 269295936485SShri Abhyankar } 269395936485SShri Abhyankar /* the last proc */ 269495936485SShri Abhyankar if (size != 1) { 269595936485SShri Abhyankar nz = procsnz[i] - extra_rows; 269695936485SShri Abhyankar vals = buf; 269795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 269895936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 269995936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 270095936485SShri Abhyankar } 270195936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 270295936485SShri Abhyankar 270395936485SShri Abhyankar } else { 270495936485SShri Abhyankar /* receive numeric values */ 2705785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 270695936485SShri Abhyankar 270795936485SShri Abhyankar /* receive message of values*/ 270895936485SShri Abhyankar vals = buf; 270995936485SShri Abhyankar mycols = ibuf; 271095936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 271195936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 271295936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 271395936485SShri Abhyankar 271495936485SShri Abhyankar /* insert into matrix */ 271595936485SShri Abhyankar jj = rstart*bs; 271695936485SShri Abhyankar for (i=0; i<m; i++) { 271795936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 271895936485SShri Abhyankar mycols += locrowlens[i]; 271995936485SShri Abhyankar vals += locrowlens[i]; 272095936485SShri Abhyankar jj++; 272195936485SShri Abhyankar } 272295936485SShri Abhyankar } 272395936485SShri Abhyankar 272495936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 272595936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 272695936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 272795936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 272895936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 272995936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 273095936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 273195936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 273295936485SShri Abhyankar PetscFunctionReturn(0); 273395936485SShri Abhyankar } 273495936485SShri Abhyankar 273595936485SShri Abhyankar #undef __FUNCT__ 27364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2737dcf5cc72SBarry Smith /*XXXXX@ 2738a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2739a30f8f8cSSatish Balay 2740a30f8f8cSSatish Balay Input Parameters: 2741a30f8f8cSSatish Balay . mat - the matrix 2742a30f8f8cSSatish Balay . fact - factor 2743a30f8f8cSSatish Balay 2744c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2745a30f8f8cSSatish Balay 2746a30f8f8cSSatish Balay Level: advanced 2747a30f8f8cSSatish Balay 2748a30f8f8cSSatish Balay Notes: 2749a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2750a30f8f8cSSatish Balay 2751a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2752a30f8f8cSSatish Balay 2753a30f8f8cSSatish Balay .seealso: MatSetOption() 2754dcf5cc72SBarry Smith @XXXXX*/ 2755dcf5cc72SBarry Smith 275624d5174aSHong Zhang 27574a2ae208SSatish Balay #undef __FUNCT__ 2758985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2759985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 276024d5174aSHong Zhang { 276124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2762f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2763ca54ac64SHong Zhang PetscReal atmp; 276487828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2765dfbe8321SBarry Smith PetscErrorCode ierr; 27661302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 27671302d50aSBarry Smith PetscMPIInt rank,size; 27681302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 276987828ca2SBarry Smith PetscScalar *va; 27708a1c53f2SBarry Smith MatScalar *ba; 2771f4c0e9e4SHong Zhang MPI_Status stat; 277224d5174aSHong Zhang 277324d5174aSHong Zhang PetscFunctionBegin; 2774e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 27750298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 27761ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2777f4c0e9e4SHong Zhang 2778ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2779ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2780f4c0e9e4SHong Zhang 2781d0f46423SBarry Smith bs = A->rmap->bs; 2782f4c0e9e4SHong Zhang mbs = a->mbs; 2783f4c0e9e4SHong Zhang Mbs = a->Mbs; 2784f4c0e9e4SHong Zhang ba = b->a; 2785f4c0e9e4SHong Zhang bi = b->i; 2786f4c0e9e4SHong Zhang bj = b->j; 2787f4c0e9e4SHong Zhang 2788f4c0e9e4SHong Zhang /* find ownerships */ 2789d0f46423SBarry Smith rowners_bs = A->rmap->range; 2790f4c0e9e4SHong Zhang 2791f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2792785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2793ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2794f4c0e9e4SHong Zhang 2795f4c0e9e4SHong Zhang /* row_max for B */ 2796b8475685SHong Zhang if (rank != size-1) { 2797f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2798f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2799f4c0e9e4SHong Zhang brow = bs*i; 2800f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2801f4c0e9e4SHong Zhang bcol = bs*(*bj); 2802f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2803ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 280404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2805f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2806f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2807ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2808ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2809f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2810f4c0e9e4SHong Zhang } 2811f4c0e9e4SHong Zhang } 2812f4c0e9e4SHong Zhang bj++; 2813f4c0e9e4SHong Zhang } 2814f4c0e9e4SHong Zhang } 2815f4c0e9e4SHong Zhang 2816f4c0e9e4SHong Zhang /* send values to its owners */ 2817f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2818f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2819ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2820ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2821ca54ac64SHong Zhang } 2822f4c0e9e4SHong Zhang } 2823f4c0e9e4SHong Zhang 2824f4c0e9e4SHong Zhang /* receive values */ 2825ca54ac64SHong Zhang if (rank) { 2826f4c0e9e4SHong Zhang rvalues = work; 2827ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2828f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2829ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2830f4c0e9e4SHong Zhang /* process values */ 2831f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2832ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2833f4c0e9e4SHong Zhang } 2834f4c0e9e4SHong Zhang } 2835ca54ac64SHong Zhang } 2836f4c0e9e4SHong Zhang 28371ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2838ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 283924d5174aSHong Zhang PetscFunctionReturn(0); 284024d5174aSHong Zhang } 28412798e883SHong Zhang 28422798e883SHong Zhang #undef __FUNCT__ 284341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 284441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 28452798e883SHong Zhang { 28462798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2847dfbe8321SBarry Smith PetscErrorCode ierr; 2848d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 28493649974fSBarry Smith PetscScalar *x,*ptr,*from; 2850ffe4fb16SHong Zhang Vec bb1; 28513649974fSBarry Smith const PetscScalar *b; 2852ffe4fb16SHong Zhang 2853ffe4fb16SHong Zhang PetscFunctionBegin; 2854e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2855e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2856ffe4fb16SHong Zhang 2857a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 285841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2859a2b30743SBarry Smith PetscFunctionReturn(0); 2860a2b30743SBarry Smith } 2861a2b30743SBarry Smith 2862ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2863ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 286441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2865ffe4fb16SHong Zhang its--; 2866ffe4fb16SHong Zhang } 2867ffe4fb16SHong Zhang 2868ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2869ffe4fb16SHong Zhang while (its--) { 2870ffe4fb16SHong Zhang 2871ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2872ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2873ffe4fb16SHong Zhang 2874ffe4fb16SHong Zhang /* copy xx into slvec0a */ 28751ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 28761ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2877ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 28781ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2879ffe4fb16SHong Zhang 2880efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2881ffe4fb16SHong Zhang 2882ffe4fb16SHong Zhang /* copy bb into slvec1a */ 28831ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 28843649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2885ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 28861ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2887ffe4fb16SHong Zhang 2888ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2889fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2890ffe4fb16SHong Zhang 2891ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 28921ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2893a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2894ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2895ffe4fb16SHong Zhang 2896ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2897ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2898ffe4fb16SHong Zhang 2899ffe4fb16SHong Zhang /* local diagonal sweep */ 290041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2901ffe4fb16SHong Zhang } 29026bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2903fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 290441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2905fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 290641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2907fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2908fa22f6d0SBarry Smith Vec xx1; 2909ace3abfcSBarry Smith PetscBool hasop; 291020f1ed55SBarry Smith const PetscScalar *diag; 2911887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 291220f1ed55SBarry Smith PetscInt i,n; 2913fa22f6d0SBarry Smith 2914fa22f6d0SBarry Smith if (!mat->xx1) { 2915fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2916fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2917fa22f6d0SBarry Smith } 2918fa22f6d0SBarry Smith xx1 = mat->xx1; 2919fa22f6d0SBarry Smith bb1 = mat->bb1; 2920fa22f6d0SBarry Smith 292141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2922fa22f6d0SBarry Smith 2923fa22f6d0SBarry Smith if (!mat->diag) { 2924effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 29252a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2926fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2927fa22f6d0SBarry Smith } 2928fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2929fa22f6d0SBarry Smith 2930fa22f6d0SBarry Smith if (hasop) { 2931fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2932887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 293320f1ed55SBarry Smith } else { 293420f1ed55SBarry Smith /* 293520f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 293620f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2937887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 293820f1ed55SBarry Smith */ 293920f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29403649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29413649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 294220f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 294320f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2944887ee2caSBarry Smith if (omega == 1.0) { 294526fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 294620f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2947887ee2caSBarry Smith } else { 294826fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2949887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2950887ee2caSBarry Smith } 295120f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29523649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29533649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 295420f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 295520f1ed55SBarry Smith } 2956fa22f6d0SBarry Smith 2957fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2958fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2959fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2960fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2961fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2962fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2963fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2964fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2965fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2966fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2967effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2968fa22f6d0SBarry Smith 2969fa22f6d0SBarry Smith /* local sweep */ 297041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2971fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2972f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2973ffe4fb16SHong Zhang PetscFunctionReturn(0); 2974ffe4fb16SHong Zhang } 2975ffe4fb16SHong Zhang 2976ffe4fb16SHong Zhang #undef __FUNCT__ 297741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 297841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2979ffe4fb16SHong Zhang { 2980ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2981dfbe8321SBarry Smith PetscErrorCode ierr; 29822798e883SHong Zhang Vec lvec1,bb1; 29832798e883SHong Zhang 29842798e883SHong Zhang PetscFunctionBegin; 2985e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2986e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 29872798e883SHong Zhang 2988c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 29892798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 299041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 29912798e883SHong Zhang its--; 29922798e883SHong Zhang } 29932798e883SHong Zhang 29942798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 29952798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 29962798e883SHong Zhang while (its--) { 2997ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 29982798e883SHong Zhang 29992798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 30002798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3001efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 30022798e883SHong Zhang 3003ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30042798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3005ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30062798e883SHong Zhang 30072798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3008efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 30092798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 30102798e883SHong Zhang 3011ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30122798e883SHong Zhang 3013c14dc6b6SHong Zhang /* diagonal sweep */ 301441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 30152798e883SHong Zhang } 30166bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 30176bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 30186bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 30192798e883SHong Zhang PetscFunctionReturn(0); 30202798e883SHong Zhang } 30212798e883SHong Zhang 3022dfb205c3SBarry Smith #undef __FUNCT__ 3023dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 3024dfb205c3SBarry Smith /*@ 3025dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3026dfb205c3SBarry Smith CSR format the local rows. 3027dfb205c3SBarry Smith 3028dfb205c3SBarry Smith Collective on MPI_Comm 3029dfb205c3SBarry Smith 3030dfb205c3SBarry Smith Input Parameters: 3031dfb205c3SBarry Smith + comm - MPI communicator 3032dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3033dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3034dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3035dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3036dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3037dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3038dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3039dfb205c3SBarry Smith . i - row indices 3040dfb205c3SBarry Smith . j - column indices 3041dfb205c3SBarry Smith - a - matrix values 3042dfb205c3SBarry Smith 3043dfb205c3SBarry Smith Output Parameter: 3044dfb205c3SBarry Smith . mat - the matrix 3045dfb205c3SBarry Smith 3046dfb205c3SBarry Smith Level: intermediate 3047dfb205c3SBarry Smith 3048dfb205c3SBarry Smith Notes: 3049dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3050dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3051dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3052dfb205c3SBarry Smith 3053dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3054dfb205c3SBarry Smith 3055dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3056dfb205c3SBarry Smith 3057dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 305869b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3059dfb205c3SBarry Smith @*/ 30607087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3061dfb205c3SBarry Smith { 3062dfb205c3SBarry Smith PetscErrorCode ierr; 3063dfb205c3SBarry Smith 3064dfb205c3SBarry Smith 3065dfb205c3SBarry Smith PetscFunctionBegin; 3066f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3067dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3068dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3069dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3070dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3071dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3072dfb205c3SBarry Smith PetscFunctionReturn(0); 3073dfb205c3SBarry Smith } 3074dfb205c3SBarry Smith 3075dfb205c3SBarry Smith 3076dfb205c3SBarry Smith #undef __FUNCT__ 3077dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 3078dfb205c3SBarry Smith /*@C 3079dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 3080dfb205c3SBarry Smith (the default parallel PETSc format). 3081dfb205c3SBarry Smith 3082dfb205c3SBarry Smith Collective on MPI_Comm 3083dfb205c3SBarry Smith 3084dfb205c3SBarry Smith Input Parameters: 30851c4f3114SJed Brown + B - the matrix 3086dfb205c3SBarry Smith . bs - the block size 3087dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3088dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3089dfb205c3SBarry Smith - v - optional values in the matrix 3090dfb205c3SBarry Smith 3091dfb205c3SBarry Smith Level: developer 3092dfb205c3SBarry Smith 3093dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3094dfb205c3SBarry Smith 309569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3096dfb205c3SBarry Smith @*/ 30977087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3098dfb205c3SBarry Smith { 30994ac538c5SBarry Smith PetscErrorCode ierr; 3100dfb205c3SBarry Smith 3101dfb205c3SBarry Smith PetscFunctionBegin; 31024ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3103dfb205c3SBarry Smith PetscFunctionReturn(0); 3104dfb205c3SBarry Smith } 3105dfb205c3SBarry Smith 3106de4b53ebSHong Zhang #undef __FUNCT__ 310710c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 310810c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 31094dcd73b1SHong Zhang { 31104dcd73b1SHong Zhang PetscErrorCode ierr; 311110c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 311210c56fdeSHong Zhang PetscInt *indx; 311310c56fdeSHong Zhang PetscScalar *values; 3114dfb205c3SBarry Smith 31154dcd73b1SHong Zhang PetscFunctionBegin; 31164dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 311710c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 311810c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 311910c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 312010c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 31214dcd73b1SHong Zhang 312210c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 312310c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 312410c56fdeSHong Zhang if (n == PETSC_DECIDE) { 312510c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 312610c56fdeSHong Zhang } 312710c56fdeSHong Zhang /* Check sum(n) = Nbs */ 312810c56fdeSHong Zhang ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 312910c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 313010c56fdeSHong Zhang 313110c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 313210c56fdeSHong Zhang rstart -= mbs; 31334dcd73b1SHong Zhang 31344dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 313510c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 3136e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 313710c56fdeSHong Zhang for (i=0; i<mbs; i++) { 31384dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 31394dcd73b1SHong Zhang nnz = nnz/bs; 31404dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 31414dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 31424dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 31434dcd73b1SHong Zhang } 3144e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 31454dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 31464dcd73b1SHong Zhang 31474dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 314810c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 31494dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 31504dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 31514dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 31524dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 31534dcd73b1SHong Zhang } 31544dcd73b1SHong Zhang 315510c56fdeSHong Zhang /* numeric phase */ 31564dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 315710c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 31584dcd73b1SHong Zhang 3159e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 31604dcd73b1SHong Zhang for (i=0; i<m; i++) { 31614dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31624dcd73b1SHong Zhang Ii = i + rstart; 316310c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 31644dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31654dcd73b1SHong Zhang } 3166e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 316710c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 316810c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31694dcd73b1SHong Zhang PetscFunctionReturn(0); 31704dcd73b1SHong Zhang } 3171