173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 9*40781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 11a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 12a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 1387828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *); 1487828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode); 1587828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode); 1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 36a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51a30f8f8cSSatish Balay int ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66a30f8f8cSSatish Balay int ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay /* 76a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 77a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 78a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 79a30f8f8cSSatish Balay length of colmap equals the global matrix length. 80a30f8f8cSSatish Balay */ 814a2ae208SSatish Balay #undef __FUNCT__ 824a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private" 83a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 84a30f8f8cSSatish Balay { 85a30f8f8cSSatish Balay PetscFunctionBegin; 8629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 88a30f8f8cSSatish Balay } 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define CHUNKSIZE 10 91a30f8f8cSSatish Balay 92a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 93a30f8f8cSSatish Balay { \ 94a30f8f8cSSatish Balay \ 95a30f8f8cSSatish Balay brow = row/bs; \ 96a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 97a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 98a30f8f8cSSatish Balay bcol = col/bs; \ 99a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 100a30f8f8cSSatish Balay low = 0; high = nrow; \ 101a30f8f8cSSatish Balay while (high-low > 3) { \ 102a30f8f8cSSatish Balay t = (low+high)/2; \ 103a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 104a30f8f8cSSatish Balay else low = t; \ 105a30f8f8cSSatish Balay } \ 106a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 107a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 108a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 109a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 110a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 111a30f8f8cSSatish Balay else *bap = value; \ 112a30f8f8cSSatish Balay goto a_noinsert; \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11629bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 117a30f8f8cSSatish Balay if (nrow >= rmax) { \ 118a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 119a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 120a30f8f8cSSatish Balay MatScalar *new_a; \ 121a30f8f8cSSatish Balay \ 12229bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 123a30f8f8cSSatish Balay \ 124a30f8f8cSSatish Balay /* malloc new storage space */ \ 125a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12682502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 128a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 129a30f8f8cSSatish Balay \ 130a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 131a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 132a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 135a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13787828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 139a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay /* free up old matrix storage */ \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 143a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 144a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 145a30f8f8cSSatish Balay } \ 146a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 147a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 148a30f8f8cSSatish Balay \ 149a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 150a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 151b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 152a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 153a30f8f8cSSatish Balay a->reallocs++; \ 154a30f8f8cSSatish Balay a->s_nz++; \ 155a30f8f8cSSatish Balay } \ 156a30f8f8cSSatish Balay N = nrow++ - 1; \ 157a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 158a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 159a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 160a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 163a30f8f8cSSatish Balay rp[_i] = bcol; \ 164a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 165a30f8f8cSSatish Balay a_noinsert:; \ 166a30f8f8cSSatish Balay ailen[brow] = nrow; \ 167a30f8f8cSSatish Balay } 168a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 169a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 170a30f8f8cSSatish Balay { \ 171a30f8f8cSSatish Balay brow = row/bs; \ 172a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 173a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 174a30f8f8cSSatish Balay bcol = col/bs; \ 175a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 176a30f8f8cSSatish Balay low = 0; high = nrow; \ 177a30f8f8cSSatish Balay while (high-low > 3) { \ 178a30f8f8cSSatish Balay t = (low+high)/2; \ 179a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 180a30f8f8cSSatish Balay else low = t; \ 181a30f8f8cSSatish Balay } \ 182a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 183a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 184a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 185a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 186a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 187a30f8f8cSSatish Balay else *bap = value; \ 188a30f8f8cSSatish Balay goto b_noinsert; \ 189a30f8f8cSSatish Balay } \ 190a30f8f8cSSatish Balay } \ 191a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19229bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 193a30f8f8cSSatish Balay if (nrow >= rmax) { \ 194a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 195a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 196a30f8f8cSSatish Balay MatScalar *new_a; \ 197a30f8f8cSSatish Balay \ 19829bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 199a30f8f8cSSatish Balay \ 200a30f8f8cSSatish Balay /* malloc new storage space */ \ 201a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20282502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 204a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 205a30f8f8cSSatish Balay \ 206a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 207a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 208a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 211a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 215a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay /* free up old matrix storage */ \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 219a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 220a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 221a30f8f8cSSatish Balay } \ 222a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 223a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 224a30f8f8cSSatish Balay \ 225a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 226a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 227b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 228a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 229a30f8f8cSSatish Balay b->reallocs++; \ 230a30f8f8cSSatish Balay b->nz++; \ 231a30f8f8cSSatish Balay } \ 232a30f8f8cSSatish Balay N = nrow++ - 1; \ 233a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 234a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 235a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 236a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 237a30f8f8cSSatish Balay } \ 238a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 239a30f8f8cSSatish Balay rp[_i] = bcol; \ 240a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 241a30f8f8cSSatish Balay b_noinsert:; \ 242a30f8f8cSSatish Balay bilen[brow] = nrow; \ 243a30f8f8cSSatish Balay } 244a30f8f8cSSatish Balay #endif 245a30f8f8cSSatish Balay 246a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 24987828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 250a30f8f8cSSatish Balay { 251a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 252a30f8f8cSSatish Balay int ierr,i,N = m*n; 253a30f8f8cSSatish Balay MatScalar *vsingle; 254a30f8f8cSSatish Balay 255a30f8f8cSSatish Balay PetscFunctionBegin; 256a30f8f8cSSatish Balay if (N > b->setvalueslen) { 257a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 259a30f8f8cSSatish Balay b->setvalueslen = N; 260a30f8f8cSSatish Balay } 261a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 262a30f8f8cSSatish Balay 263a30f8f8cSSatish Balay for (i=0; i<N; i++) { 264a30f8f8cSSatish Balay vsingle[i] = v[i]; 265a30f8f8cSSatish Balay } 266a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 267a30f8f8cSSatish Balay PetscFunctionReturn(0); 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 27287828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 273a30f8f8cSSatish Balay { 274a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 275a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 276a30f8f8cSSatish Balay MatScalar *vsingle; 277a30f8f8cSSatish Balay 278a30f8f8cSSatish Balay PetscFunctionBegin; 279a30f8f8cSSatish Balay if (N > b->setvalueslen) { 280a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 28182502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 282a30f8f8cSSatish Balay b->setvalueslen = N; 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 285a30f8f8cSSatish Balay for (i=0; i<N; i++) { 286a30f8f8cSSatish Balay vsingle[i] = v[i]; 287a30f8f8cSSatish Balay } 288a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 289a30f8f8cSSatish Balay PetscFunctionReturn(0); 290a30f8f8cSSatish Balay } 291a30f8f8cSSatish Balay 2924a2ae208SSatish Balay #undef __FUNCT__ 2934a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 29487828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 295a30f8f8cSSatish Balay { 296a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 297a30f8f8cSSatish Balay int ierr,i,N = m*n; 298a30f8f8cSSatish Balay MatScalar *vsingle; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay PetscFunctionBegin; 30129bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3024d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay 3054a2ae208SSatish Balay #undef __FUNCT__ 3064a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 30787828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 308a30f8f8cSSatish Balay { 309a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 310a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 311a30f8f8cSSatish Balay MatScalar *vsingle; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 31429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3154d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay #endif 318a30f8f8cSSatish Balay 319a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 320a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 321a30f8f8cSSatish Balay */ 3224a2ae208SSatish Balay #undef __FUNCT__ 3234a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 324a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 325a30f8f8cSSatish Balay { 326a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 327a30f8f8cSSatish Balay MatScalar value; 328b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 329a30f8f8cSSatish Balay int ierr,i,j,row,col; 330b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 331a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 332a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 333a30f8f8cSSatish Balay 334a30f8f8cSSatish Balay /* Some Variables required in the macro */ 335a30f8f8cSSatish Balay Mat A = baij->A; 336a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 337a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 338a30f8f8cSSatish Balay MatScalar *aa=a->a; 339a30f8f8cSSatish Balay 340a30f8f8cSSatish Balay Mat B = baij->B; 341a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 342a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 343a30f8f8cSSatish Balay MatScalar *ba=b->a; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 346a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 347a30f8f8cSSatish Balay MatScalar *ap,*bap; 348a30f8f8cSSatish Balay 349a30f8f8cSSatish Balay /* for stash */ 350f65c83cfSHong Zhang int n_loc, *in_loc=0; 351f65c83cfSHong Zhang MatScalar *v_loc=0; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay PetscFunctionBegin; 354a30f8f8cSSatish Balay 355a30f8f8cSSatish Balay if(!baij->donotstash){ 35682502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35782502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 358a30f8f8cSSatish Balay } 359a30f8f8cSSatish Balay 360a30f8f8cSSatish Balay for (i=0; i<m; i++) { 361a30f8f8cSSatish Balay if (im[i] < 0) continue; 362a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 363b5df2d14SHong Zhang if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 364a30f8f8cSSatish Balay #endif 365a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 366a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 367a30f8f8cSSatish Balay for (j=0; j<n; j++) { 368f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 369a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 370a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 371a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 372a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 373a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 374a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 375a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 376a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 377a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 378b5df2d14SHong Zhang else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 379a30f8f8cSSatish Balay #endif 380a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 381a30f8f8cSSatish Balay if (mat->was_assembled) { 382a30f8f8cSSatish Balay if (!baij->colmap) { 383a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 386a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 38771730473SSatish Balay col = col - 1; 388a30f8f8cSSatish Balay #else 38971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 390a30f8f8cSSatish Balay #endif 391a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 392a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 393a30f8f8cSSatish Balay col = in[j]; 394a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 395a30f8f8cSSatish Balay B = baij->B; 396a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 397a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 398a30f8f8cSSatish Balay ba=b->a; 39971730473SSatish Balay } else col += in[j]%bs; 400a30f8f8cSSatish Balay } else col = in[j]; 401a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 402a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 403a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay } else { /* off processor entry */ 407a30f8f8cSSatish Balay if (!baij->donotstash) { 408a30f8f8cSSatish Balay n_loc = 0; 409a30f8f8cSSatish Balay for (j=0; j<n; j++){ 410f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 411a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 412a30f8f8cSSatish Balay if (roworiented) { 413a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 414a30f8f8cSSatish Balay } else { 415a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay n_loc++; 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay } 422a30f8f8cSSatish Balay } 423a30f8f8cSSatish Balay 424a30f8f8cSSatish Balay if(!baij->donotstash){ 425a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 426a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay PetscFunctionReturn(0); 429a30f8f8cSSatish Balay } 430a30f8f8cSSatish Balay 4314a2ae208SSatish Balay #undef __FUNCT__ 4324a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 433a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 434a30f8f8cSSatish Balay { 435a30f8f8cSSatish Balay PetscFunctionBegin; 43629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 43796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 438a30f8f8cSSatish Balay } 439a30f8f8cSSatish Balay 440a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 441a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 442a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 443a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 4444a2ae208SSatish Balay #undef __FUNCT__ 4454a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 446a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 447a30f8f8cSSatish Balay { 448a30f8f8cSSatish Balay PetscFunctionBegin; 44929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 451a30f8f8cSSatish Balay } 452a30f8f8cSSatish Balay 4534a2ae208SSatish Balay #undef __FUNCT__ 4544a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 455a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 456a30f8f8cSSatish Balay { 457a30f8f8cSSatish Balay PetscFunctionBegin; 45829bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 460a30f8f8cSSatish Balay } 461a30f8f8cSSatish Balay 4624a2ae208SSatish Balay #undef __FUNCT__ 4634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 46487828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v) 465a30f8f8cSSatish Balay { 466f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 467a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 468a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 469a30f8f8cSSatish Balay 470a30f8f8cSSatish Balay PetscFunctionBegin; 471a30f8f8cSSatish Balay for (i=0; i<m; i++) { 47229bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 473b5df2d14SHong Zhang if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 474a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 475a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 476a30f8f8cSSatish Balay for (j=0; j<n; j++) { 47729bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 478b5df2d14SHong Zhang if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 479a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 480a30f8f8cSSatish Balay col = idxn[j] - bscstart; 481c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 482a30f8f8cSSatish Balay } else { 483a30f8f8cSSatish Balay if (!baij->colmap) { 484a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 485a30f8f8cSSatish Balay } 486a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 487a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 488a30f8f8cSSatish Balay data --; 489a30f8f8cSSatish Balay #else 490a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 491a30f8f8cSSatish Balay #endif 492a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 493a30f8f8cSSatish Balay else { 494a30f8f8cSSatish Balay col = data + idxn[j]%bs; 495c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay } 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay } else { 50029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 501a30f8f8cSSatish Balay } 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay PetscFunctionReturn(0); 504a30f8f8cSSatish Balay } 505a30f8f8cSSatish Balay 5064a2ae208SSatish Balay #undef __FUNCT__ 5074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 508a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 509a30f8f8cSSatish Balay { 510a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 511bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 512bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 513a30f8f8cSSatish Balay int ierr; 514a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 515a30f8f8cSSatish Balay 516a30f8f8cSSatish Balay PetscFunctionBegin; 517a30f8f8cSSatish Balay if (baij->size == 1) { 518a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 519a30f8f8cSSatish Balay } else { 520a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 521f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 522a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 523a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 524a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 525a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 526a30f8f8cSSatish Balay /* 527a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 528a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 529a30f8f8cSSatish Balay */ 530d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 531a30f8f8cSSatish Balay /* 532a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 533a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 534a30f8f8cSSatish Balay 535a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 536a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 537a30f8f8cSSatish Balay } else { 53829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay PetscFunctionReturn(0); 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay 544a30f8f8cSSatish Balay /* 545a30f8f8cSSatish Balay Creates the hash table, and sets the table 546a30f8f8cSSatish Balay This table is created only once. 547a30f8f8cSSatish Balay If new entried need to be added to the matrix 548a30f8f8cSSatish Balay then the hash table has to be destroyed and 549a30f8f8cSSatish Balay recreated. 550a30f8f8cSSatish Balay */ 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 553a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 554a30f8f8cSSatish Balay { 555a30f8f8cSSatish Balay PetscFunctionBegin; 55629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 558a30f8f8cSSatish Balay } 559a30f8f8cSSatish Balay 5604a2ae208SSatish Balay #undef __FUNCT__ 5614a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 562a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 563a30f8f8cSSatish Balay { 564a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 565a30f8f8cSSatish Balay int ierr,nstash,reallocs; 566a30f8f8cSSatish Balay InsertMode addv; 567a30f8f8cSSatish Balay 568a30f8f8cSSatish Balay PetscFunctionBegin; 569a30f8f8cSSatish Balay if (baij->donotstash) { 570a30f8f8cSSatish Balay PetscFunctionReturn(0); 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 574a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 575a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 57629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 577a30f8f8cSSatish Balay } 578a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 579a30f8f8cSSatish Balay 580a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 581a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 582a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 583b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 584a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 585b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 591a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 594a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 595a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 596a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 597a30f8f8cSSatish Balay int *row,*col,other_disassembled; 598a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 599a30f8f8cSSatish Balay MatScalar *val; 600a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 601a30f8f8cSSatish Balay 602a30f8f8cSSatish Balay PetscFunctionBegin; 603a30f8f8cSSatish Balay 604a30f8f8cSSatish Balay if (!baij->donotstash) { 605a30f8f8cSSatish Balay while (1) { 606a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 607a30f8f8cSSatish Balay /* 608a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 609a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 610a30f8f8cSSatish Balay */ 611a30f8f8cSSatish Balay if (!flg) break; 612a30f8f8cSSatish Balay 613a30f8f8cSSatish Balay for (i=0; i<n;) { 614a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 615a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 616a30f8f8cSSatish Balay if (j < n) ncols = j-i; 617a30f8f8cSSatish Balay else ncols = n-i; 618a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 619a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 620a30f8f8cSSatish Balay i = j; 621a30f8f8cSSatish Balay } 622a30f8f8cSSatish Balay } 623a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 624a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 625a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 626a30f8f8cSSatish Balay restore the original flags */ 627a30f8f8cSSatish Balay r1 = baij->roworiented; 628a30f8f8cSSatish Balay r2 = a->roworiented; 629a30f8f8cSSatish Balay r3 = b->roworiented; 630a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 631a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 632a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 633a30f8f8cSSatish Balay while (1) { 634a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 635a30f8f8cSSatish Balay if (!flg) break; 636a30f8f8cSSatish Balay 637a30f8f8cSSatish Balay for (i=0; i<n;) { 638a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 639a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 640a30f8f8cSSatish Balay if (j < n) ncols = j-i; 641a30f8f8cSSatish Balay else ncols = n-i; 642a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 643a30f8f8cSSatish Balay i = j; 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 647a30f8f8cSSatish Balay baij->roworiented = r1; 648a30f8f8cSSatish Balay a->roworiented = r2; 649a30f8f8cSSatish Balay b->roworiented = r3; 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay 652a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 653a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 654a30f8f8cSSatish Balay 655a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 656a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 657a30f8f8cSSatish Balay /* 658a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 659a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 660a30f8f8cSSatish Balay */ 661a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 662a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 663a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 664c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 665a30f8f8cSSatish Balay } 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay 668a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 669*40781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 670a30f8f8cSSatish Balay } 671a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 672a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 675a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 676f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 677a30f8f8cSSatish Balay baij->ht_total_ct = 0; 678a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 679a30f8f8cSSatish Balay } 680a30f8f8cSSatish Balay #endif 681a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 682c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 683a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 684a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay 687a30f8f8cSSatish Balay if (baij->rowvalues) { 688a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 689a30f8f8cSSatish Balay baij->rowvalues = 0; 690a30f8f8cSSatish Balay } 691a30f8f8cSSatish Balay PetscFunctionReturn(0); 692a30f8f8cSSatish Balay } 693a30f8f8cSSatish Balay 6944a2ae208SSatish Balay #undef __FUNCT__ 6954a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 696b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 697a30f8f8cSSatish Balay { 698a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 699fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 700a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 701b0a32e0cSBarry Smith PetscViewer sviewer; 702f3ef73ceSBarry Smith PetscViewerFormat format; 703a30f8f8cSSatish Balay 704a30f8f8cSSatish Balay PetscFunctionBegin; 705b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 706fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 707a30f8f8cSSatish Balay if (isascii) { 708b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 709fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_INFO_LONG) { 710a30f8f8cSSatish Balay MatInfo info; 711a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 713b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 714b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 715a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 716a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 717b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 719b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 720b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 721a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 722a30f8f8cSSatish Balay PetscFunctionReturn(0); 723fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 724b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 725a30f8f8cSSatish Balay PetscFunctionReturn(0); 726a30f8f8cSSatish Balay } 727a30f8f8cSSatish Balay } 728a30f8f8cSSatish Balay 729a30f8f8cSSatish Balay if (isdraw) { 730b0a32e0cSBarry Smith PetscDraw draw; 731a30f8f8cSSatish Balay PetscTruth isnull; 732b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 733b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 734a30f8f8cSSatish Balay } 735a30f8f8cSSatish Balay 736a30f8f8cSSatish Balay if (size == 1) { 737e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 738a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 739a30f8f8cSSatish Balay } else { 740a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 741a30f8f8cSSatish Balay Mat A; 74265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 74365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 744b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 745a30f8f8cSSatish Balay MatScalar *a; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay if (!rank) { 748bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 749a30f8f8cSSatish Balay } else { 750f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 751a30f8f8cSSatish Balay } 752b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 753a30f8f8cSSatish Balay 754a30f8f8cSSatish Balay /* copy over the A part */ 75565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 756a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 75782502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 758a30f8f8cSSatish Balay 759a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 760a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 761a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 762a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 763a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 764a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 765a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 766a30f8f8cSSatish Balay col++; a += bs; 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay /* copy over the B part */ 77165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 77265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 773a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 774a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 775a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 776a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 777a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 778a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 779a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 780a30f8f8cSSatish Balay col++; a += bs; 781a30f8f8cSSatish Balay } 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay } 784a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 785a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 786a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 787a30f8f8cSSatish Balay /* 788a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 789b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 790a30f8f8cSSatish Balay */ 791b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 79265d70643SHong Zhang if (!rank) { 793e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 794a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 795a30f8f8cSSatish Balay } 796b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 797a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 798a30f8f8cSSatish Balay } 799a30f8f8cSSatish Balay PetscFunctionReturn(0); 800a30f8f8cSSatish Balay } 801a30f8f8cSSatish Balay 8024a2ae208SSatish Balay #undef __FUNCT__ 8034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 804b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 805a30f8f8cSSatish Balay { 806a30f8f8cSSatish Balay int ierr; 807a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 808a30f8f8cSSatish Balay 809a30f8f8cSSatish Balay PetscFunctionBegin; 810b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 811fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 812b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 813fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 814a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 815a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 816a30f8f8cSSatish Balay } else { 81729bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 818a30f8f8cSSatish Balay } 819a30f8f8cSSatish Balay PetscFunctionReturn(0); 820a30f8f8cSSatish Balay } 821a30f8f8cSSatish Balay 8224a2ae208SSatish Balay #undef __FUNCT__ 8234a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 824a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 825a30f8f8cSSatish Balay { 826a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 827a30f8f8cSSatish Balay int ierr; 828a30f8f8cSSatish Balay 829a30f8f8cSSatish Balay PetscFunctionBegin; 830a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 831b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 832a30f8f8cSSatish Balay #endif 833a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 834a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 835a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 836a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 837a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 838a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 839a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 840a30f8f8cSSatish Balay #else 841a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 842a30f8f8cSSatish Balay #endif 843a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 844a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 845a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 846*40781036SHong Zhang if (baij->slvec0) { 847*40781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 848*40781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 849*40781036SHong Zhang } 850*40781036SHong Zhang if (baij->slvec1) { 851*40781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 852*40781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 853*40781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 854*40781036SHong Zhang } 855*40781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 856a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 857a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 858a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 859a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 860a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 861a30f8f8cSSatish Balay #endif 862a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 863a30f8f8cSSatish Balay PetscFunctionReturn(0); 864a30f8f8cSSatish Balay } 865a30f8f8cSSatish Balay 8664a2ae208SSatish Balay #undef __FUNCT__ 867*40781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 868*40781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 869a30f8f8cSSatish Balay { 870a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 871a30f8f8cSSatish Balay int ierr,nt; 872a30f8f8cSSatish Balay 873a30f8f8cSSatish Balay PetscFunctionBegin; 874a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 875b5df2d14SHong Zhang if (nt != A->n) { 87629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 877a30f8f8cSSatish Balay } 878a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 879b5df2d14SHong Zhang if (nt != A->m) { 88029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 881a30f8f8cSSatish Balay } 88265d70643SHong Zhang 883b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 884b941877fSHong Zhang /* do diagonal part */ 885b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 886b941877fSHong Zhang /* do supperdiagonal part */ 887b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 888b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 889b941877fSHong Zhang /* do subdiagonal part */ 890b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 891b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 892b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 89365d70643SHong Zhang 894a30f8f8cSSatish Balay PetscFunctionReturn(0); 895a30f8f8cSSatish Balay } 896a30f8f8cSSatish Balay 8974a2ae208SSatish Balay #undef __FUNCT__ 8984a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 899a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 900a30f8f8cSSatish Balay { 901de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 902aa482183SHong Zhang int ierr; 903a30f8f8cSSatish Balay 904a30f8f8cSSatish Balay PetscFunctionBegin; 905b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 906b941877fSHong Zhang /* do diagonal part */ 907b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 908b941877fSHong Zhang /* do supperdiagonal part */ 909b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 910de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 911de8b6608SHong Zhang 912b941877fSHong Zhang /* do subdiagonal part */ 913a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 914a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 915a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 916aa482183SHong Zhang 917a30f8f8cSSatish Balay PetscFunctionReturn(0); 918a30f8f8cSSatish Balay } 919a30f8f8cSSatish Balay 9204a2ae208SSatish Balay #undef __FUNCT__ 9214a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 922a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 923a30f8f8cSSatish Balay { 924a30f8f8cSSatish Balay PetscFunctionBegin; 92529bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 92696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 927a30f8f8cSSatish Balay } 928a30f8f8cSSatish Balay 9294a2ae208SSatish Balay #undef __FUNCT__ 9304a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 931a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 932a30f8f8cSSatish Balay { 933a30f8f8cSSatish Balay PetscFunctionBegin; 93429bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 93596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 936a30f8f8cSSatish Balay } 937a30f8f8cSSatish Balay 938a30f8f8cSSatish Balay /* 939a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 940a30f8f8cSSatish Balay diagonal block 941a30f8f8cSSatish Balay */ 9424a2ae208SSatish Balay #undef __FUNCT__ 9434a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 944a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 945a30f8f8cSSatish Balay { 946a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 947a30f8f8cSSatish Balay int ierr; 948a30f8f8cSSatish Balay 949a30f8f8cSSatish Balay PetscFunctionBegin; 95029bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 951a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 952a30f8f8cSSatish Balay PetscFunctionReturn(0); 953a30f8f8cSSatish Balay } 954a30f8f8cSSatish Balay 9554a2ae208SSatish Balay #undef __FUNCT__ 9564a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 95787828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A) 958a30f8f8cSSatish Balay { 959a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 960a30f8f8cSSatish Balay int ierr; 961a30f8f8cSSatish Balay 962a30f8f8cSSatish Balay PetscFunctionBegin; 963a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 964a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 965a30f8f8cSSatish Balay PetscFunctionReturn(0); 966a30f8f8cSSatish Balay } 967a30f8f8cSSatish Balay 9684a2ae208SSatish Balay #undef __FUNCT__ 9694a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 97087828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 971a30f8f8cSSatish Balay { 972a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 97387828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 974a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 975a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 976a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 977a30f8f8cSSatish Balay 978a30f8f8cSSatish Balay PetscFunctionBegin; 97929bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 980a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 981a30f8f8cSSatish Balay 982a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 983a30f8f8cSSatish Balay /* 984a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 985a30f8f8cSSatish Balay */ 986a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 987a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 988a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 989a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 990a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 991a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 992a30f8f8cSSatish Balay } 99387828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 994a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 995a30f8f8cSSatish Balay } 996a30f8f8cSSatish Balay 99729bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 998a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 999a30f8f8cSSatish Balay 1000a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1001a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1002a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1003a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1004a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1005a30f8f8cSSatish Balay nztot = nzA + nzB; 1006a30f8f8cSSatish Balay 1007a30f8f8cSSatish Balay cmap = mat->garray; 1008a30f8f8cSSatish Balay if (v || idx) { 1009a30f8f8cSSatish Balay if (nztot) { 1010a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1011a30f8f8cSSatish Balay int imark = -1; 1012a30f8f8cSSatish Balay if (v) { 1013a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1014a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1015a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1016a30f8f8cSSatish Balay else break; 1017a30f8f8cSSatish Balay } 1018a30f8f8cSSatish Balay imark = i; 1019a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1020a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1021a30f8f8cSSatish Balay } 1022a30f8f8cSSatish Balay if (idx) { 1023a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1024a30f8f8cSSatish Balay if (imark > -1) { 1025a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1026a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1027a30f8f8cSSatish Balay } 1028a30f8f8cSSatish Balay } else { 1029a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1030a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1031a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1032a30f8f8cSSatish Balay else break; 1033a30f8f8cSSatish Balay } 1034a30f8f8cSSatish Balay imark = i; 1035a30f8f8cSSatish Balay } 1036a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1037a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1038a30f8f8cSSatish Balay } 1039a30f8f8cSSatish Balay } else { 1040a30f8f8cSSatish Balay if (idx) *idx = 0; 1041a30f8f8cSSatish Balay if (v) *v = 0; 1042a30f8f8cSSatish Balay } 1043a30f8f8cSSatish Balay } 1044a30f8f8cSSatish Balay *nz = nztot; 1045a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1046a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1047a30f8f8cSSatish Balay PetscFunctionReturn(0); 1048a30f8f8cSSatish Balay } 1049a30f8f8cSSatish Balay 10504a2ae208SSatish Balay #undef __FUNCT__ 10514a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 105287828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1053a30f8f8cSSatish Balay { 1054a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1055a30f8f8cSSatish Balay 1056a30f8f8cSSatish Balay PetscFunctionBegin; 1057a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 105829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1059a30f8f8cSSatish Balay } 1060a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1061a30f8f8cSSatish Balay PetscFunctionReturn(0); 1062a30f8f8cSSatish Balay } 1063a30f8f8cSSatish Balay 10644a2ae208SSatish Balay #undef __FUNCT__ 10654a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1066a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1067a30f8f8cSSatish Balay { 1068a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1069a30f8f8cSSatish Balay 1070a30f8f8cSSatish Balay PetscFunctionBegin; 1071a30f8f8cSSatish Balay *bs = baij->bs; 1072a30f8f8cSSatish Balay PetscFunctionReturn(0); 1073a30f8f8cSSatish Balay } 1074a30f8f8cSSatish Balay 10754a2ae208SSatish Balay #undef __FUNCT__ 10764a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1077a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1078a30f8f8cSSatish Balay { 1079a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1080a30f8f8cSSatish Balay int ierr; 1081a30f8f8cSSatish Balay 1082a30f8f8cSSatish Balay PetscFunctionBegin; 1083a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1084a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1085a30f8f8cSSatish Balay PetscFunctionReturn(0); 1086a30f8f8cSSatish Balay } 1087a30f8f8cSSatish Balay 10884a2ae208SSatish Balay #undef __FUNCT__ 10894a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1090a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1091a30f8f8cSSatish Balay { 1092a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1093a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1094a30f8f8cSSatish Balay int ierr; 1095a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1096a30f8f8cSSatish Balay 1097a30f8f8cSSatish Balay PetscFunctionBegin; 1098f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1099a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1100a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1101a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1102a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1103a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1104a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1105a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1106a30f8f8cSSatish Balay info->nz_used = isend[0]; 1107a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1108a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1109a30f8f8cSSatish Balay info->memory = isend[3]; 1110a30f8f8cSSatish Balay info->mallocs = isend[4]; 1111a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1112d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1113a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1114a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1115a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1116a30f8f8cSSatish Balay info->memory = irecv[3]; 1117a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1118a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1119d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1120a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1121a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1122a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1123a30f8f8cSSatish Balay info->memory = irecv[3]; 1124a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1125a30f8f8cSSatish Balay } else { 112629bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1127a30f8f8cSSatish Balay } 1128f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1129f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1130f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1131f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1132a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1133a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1134a30f8f8cSSatish Balay info->factor_mallocs = 0; 1135a30f8f8cSSatish Balay PetscFunctionReturn(0); 1136a30f8f8cSSatish Balay } 1137a30f8f8cSSatish Balay 11384a2ae208SSatish Balay #undef __FUNCT__ 11394a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1140a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1141a30f8f8cSSatish Balay { 1142a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1143a30f8f8cSSatish Balay int ierr; 1144a30f8f8cSSatish Balay 1145a30f8f8cSSatish Balay PetscFunctionBegin; 1146e98b92d7SKris Buschelman switch (op) { 1147e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1148e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1149e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1150e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1151e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1152e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1153e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1154a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1155a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1156e98b92d7SKris Buschelman break; 1157e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1158a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1159a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1160a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1161e98b92d7SKris Buschelman break; 1162e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1163e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1164e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1165d03495bdSKris Buschelman case MAT_USE_SINGLE_PRECISION_SOLVES: 1166b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1167e98b92d7SKris Buschelman break; 1168e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1169a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1170a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1171a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1172e98b92d7SKris Buschelman break; 1173e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1174a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1175e98b92d7SKris Buschelman break; 1176e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 117729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1178e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1179a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1180e98b92d7SKris Buschelman break; 1181e98b92d7SKris Buschelman default: 118229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1183a30f8f8cSSatish Balay } 1184a30f8f8cSSatish Balay PetscFunctionReturn(0); 1185a30f8f8cSSatish Balay } 1186a30f8f8cSSatish Balay 11874a2ae208SSatish Balay #undef __FUNCT__ 11884a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPISBAIJ(" 1189a30f8f8cSSatish Balay int MatTranspose_MPISBAIJ(Mat A,Mat *matout) 1190a30f8f8cSSatish Balay { 1191a30f8f8cSSatish Balay PetscFunctionBegin; 119229bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. MatTranspose() should not be called"); 119396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1194a30f8f8cSSatish Balay } 1195a30f8f8cSSatish Balay 11964a2ae208SSatish Balay #undef __FUNCT__ 11974a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1198a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1199a30f8f8cSSatish Balay { 1200a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1201a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1202a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1203a30f8f8cSSatish Balay 1204a30f8f8cSSatish Balay PetscFunctionBegin; 1205a30f8f8cSSatish Balay if (ll != rr) { 120629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1207a30f8f8cSSatish Balay } 1208a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1209a30f8f8cSSatish Balay if (rr) { 1210a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 121129bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1212a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1213a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1214a30f8f8cSSatish Balay /*} if (ll) { */ 1215a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 121629bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1217a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1218a30f8f8cSSatish Balay /* } */ 1219a30f8f8cSSatish Balay /* scale the diagonal block */ 1220a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1221a30f8f8cSSatish Balay 1222a30f8f8cSSatish Balay /* if (rr) { */ 1223a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1224a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1225a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1226a30f8f8cSSatish Balay } 1227a30f8f8cSSatish Balay 1228a30f8f8cSSatish Balay PetscFunctionReturn(0); 1229a30f8f8cSSatish Balay } 1230a30f8f8cSSatish Balay 12314a2ae208SSatish Balay #undef __FUNCT__ 12324a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 123387828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag) 1234a30f8f8cSSatish Balay { 1235a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1236a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 123735d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work,row; 1238a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1239a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1240a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1241a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1242a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1243a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1244a30f8f8cSSatish Balay IS istmp; 124535d8aa7fSBarry Smith PetscTruth found; 1246a30f8f8cSSatish Balay 1247a30f8f8cSSatish Balay PetscFunctionBegin; 1248a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1249a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1250a30f8f8cSSatish Balay 1251a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 125282502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 1253a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1254a30f8f8cSSatish Balay procs = nprocs + size; 1255b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 1256a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1257a30f8f8cSSatish Balay idx = rows[i]; 125835d8aa7fSBarry Smith found = PETSC_FALSE; 1259a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1260a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 126135d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 1262a30f8f8cSSatish Balay } 1263a30f8f8cSSatish Balay } 126429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 1265a30f8f8cSSatish Balay } 1266a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1267a30f8f8cSSatish Balay 1268a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 126982502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 1270a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1271a30f8f8cSSatish Balay nmax = work[rank]; 1272a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1273a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1274a30f8f8cSSatish Balay 1275a30f8f8cSSatish Balay /* post receives: */ 1276b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 1277b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 1278a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1279a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1280a30f8f8cSSatish Balay } 1281a30f8f8cSSatish Balay 1282a30f8f8cSSatish Balay /* do sends: 1283a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1284a30f8f8cSSatish Balay the ith processor 1285a30f8f8cSSatish Balay */ 1286b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 1287b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1288b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 1289a30f8f8cSSatish Balay starts[0] = 0; 1290a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1291a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1292a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1293a30f8f8cSSatish Balay } 1294a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1295a30f8f8cSSatish Balay 1296a30f8f8cSSatish Balay starts[0] = 0; 1297a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1298a30f8f8cSSatish Balay count = 0; 1299a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1300a30f8f8cSSatish Balay if (procs[i]) { 1301a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1302a30f8f8cSSatish Balay } 1303a30f8f8cSSatish Balay } 1304a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay 1306a30f8f8cSSatish Balay base = owners[rank]*bs; 1307a30f8f8cSSatish Balay 1308a30f8f8cSSatish Balay /* wait on receives */ 1309b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 1310a30f8f8cSSatish Balay source = lens + nrecvs; 1311a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1312a30f8f8cSSatish Balay while (count) { 1313a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1314a30f8f8cSSatish Balay /* unpack receives into our local space */ 1315a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1316a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1317a30f8f8cSSatish Balay lens[imdex] = n; 1318a30f8f8cSSatish Balay slen += n; 1319a30f8f8cSSatish Balay count--; 1320a30f8f8cSSatish Balay } 1321a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1322a30f8f8cSSatish Balay 1323a30f8f8cSSatish Balay /* move the data into the send scatter */ 1324b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 1325a30f8f8cSSatish Balay count = 0; 1326a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1327a30f8f8cSSatish Balay values = rvalues + i*nmax; 1328a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1329a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1330a30f8f8cSSatish Balay } 1331a30f8f8cSSatish Balay } 1332a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1333a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1334a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1335a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1336a30f8f8cSSatish Balay 1337a30f8f8cSSatish Balay /* actually zap the local rows */ 1338a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1339b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1340a30f8f8cSSatish Balay 1341a30f8f8cSSatish Balay /* 1342a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1343a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1344a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1345a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1346a30f8f8cSSatish Balay 1347a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1348a30f8f8cSSatish Balay */ 1349a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1350ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1351a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1352a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1353a30f8f8cSSatish Balay } else if (diag) { 1354a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1355a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 135629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1357a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1358a30f8f8cSSatish Balay } 1359a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1360a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1361a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1362a30f8f8cSSatish Balay } 1363a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1364a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1365a30f8f8cSSatish Balay } else { 1366a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1367a30f8f8cSSatish Balay } 1368a30f8f8cSSatish Balay 1369a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1370a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1371a30f8f8cSSatish Balay 1372a30f8f8cSSatish Balay /* wait on sends */ 1373a30f8f8cSSatish Balay if (nsends) { 137482502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1375a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1376a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1377a30f8f8cSSatish Balay } 1378a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1379a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1380a30f8f8cSSatish Balay 1381a30f8f8cSSatish Balay PetscFunctionReturn(0); 1382a30f8f8cSSatish Balay } 1383a30f8f8cSSatish Balay 13844a2ae208SSatish Balay #undef __FUNCT__ 13854a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1386a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1387a30f8f8cSSatish Balay { 1388a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1389a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1390a30f8f8cSSatish Balay static int called = 0; 1391a30f8f8cSSatish Balay int ierr; 1392a30f8f8cSSatish Balay 1393a30f8f8cSSatish Balay PetscFunctionBegin; 1394a30f8f8cSSatish Balay if (!a->rank) { 1395a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1396a30f8f8cSSatish Balay } 1397a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1398a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1399a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1400a30f8f8cSSatish Balay PetscFunctionReturn(0); 1401a30f8f8cSSatish Balay } 1402a30f8f8cSSatish Balay 14034a2ae208SSatish Balay #undef __FUNCT__ 14044a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1405a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1406a30f8f8cSSatish Balay { 1407f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1408a30f8f8cSSatish Balay int ierr; 1409a30f8f8cSSatish Balay 1410a30f8f8cSSatish Balay PetscFunctionBegin; 1411a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1412a30f8f8cSSatish Balay PetscFunctionReturn(0); 1413a30f8f8cSSatish Balay } 1414a30f8f8cSSatish Balay 1415a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1416a30f8f8cSSatish Balay 14174a2ae208SSatish Balay #undef __FUNCT__ 14184a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1419a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1420a30f8f8cSSatish Balay { 1421a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1422a30f8f8cSSatish Balay Mat a,b,c,d; 1423a30f8f8cSSatish Balay PetscTruth flg; 1424a30f8f8cSSatish Balay int ierr; 1425a30f8f8cSSatish Balay 1426a30f8f8cSSatish Balay PetscFunctionBegin; 1427b5df2d14SHong Zhang ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr); 1428b5df2d14SHong Zhang if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1429a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1430a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1431a30f8f8cSSatish Balay 1432a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1433a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1434a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1435a30f8f8cSSatish Balay } 1436a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1437a30f8f8cSSatish Balay PetscFunctionReturn(0); 1438a30f8f8cSSatish Balay } 1439a30f8f8cSSatish Balay 14404a2ae208SSatish Balay #undef __FUNCT__ 14414a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1442273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1443273d9f13SBarry Smith { 1444273d9f13SBarry Smith int ierr; 1445273d9f13SBarry Smith 1446273d9f13SBarry Smith PetscFunctionBegin; 1447273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1448273d9f13SBarry Smith PetscFunctionReturn(0); 1449273d9f13SBarry Smith } 1450a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1451a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1452a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1453a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1454a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1455*40781036SHong Zhang MatMult_MPISBAIJ_2comm, 1456a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1457a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1458a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 1464a30f8f8cSSatish Balay 0, 14652798e883SHong Zhang MatRelax_MPISBAIJ, 1466a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1467a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1468a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1469a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1470a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1471a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1472a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1473a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1476a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1477a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482273d9f13SBarry Smith MatSetUpPreallocation_MPISBAIJ, 1483b5df2d14SHong Zhang 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1488a30f8f8cSSatish Balay 0, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 1493a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1494a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1495a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1498a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay 0, 1502a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1512a30f8f8cSSatish Balay 0, 1513a30f8f8cSSatish Balay 0, 1514a30f8f8cSSatish Balay 0, 15158a124369SBarry Smith MatGetPetscMaps_Petsc, 151624d5174aSHong Zhang 0, 151724d5174aSHong Zhang 0, 151824d5174aSHong Zhang 0, 151924d5174aSHong Zhang 0, 152024d5174aSHong Zhang 0, 152124d5174aSHong Zhang 0, 152224d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1523a30f8f8cSSatish Balay 1524a30f8f8cSSatish Balay 1525a30f8f8cSSatish Balay EXTERN_C_BEGIN 15264a2ae208SSatish Balay #undef __FUNCT__ 15274a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1528a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1529a30f8f8cSSatish Balay { 1530a30f8f8cSSatish Balay PetscFunctionBegin; 1531a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1532a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1533a30f8f8cSSatish Balay PetscFunctionReturn(0); 1534a30f8f8cSSatish Balay } 1535a30f8f8cSSatish Balay EXTERN_C_END 1536a30f8f8cSSatish Balay 1537273d9f13SBarry Smith EXTERN_C_BEGIN 15384a2ae208SSatish Balay #undef __FUNCT__ 15394a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1540b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1541b5df2d14SHong Zhang { 1542b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1543ca54ac64SHong Zhang int ierr; 1544b5df2d14SHong Zhang PetscTruth flg; 1545b5df2d14SHong Zhang 1546b5df2d14SHong Zhang PetscFunctionBegin; 1547b5df2d14SHong Zhang 1548b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1549b0a32e0cSBarry Smith B->data = (void*)b; 1550b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1551b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1552b5df2d14SHong Zhang 1553b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1554b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1555b5df2d14SHong Zhang B->mapping = 0; 1556b5df2d14SHong Zhang B->factor = 0; 1557b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1558b5df2d14SHong Zhang 1559b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1560b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1561b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1562b5df2d14SHong Zhang 1563b5df2d14SHong Zhang /* build local table of row and column ownerships */ 156482502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1565273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1566273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1567b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1568b5df2d14SHong Zhang 1569b5df2d14SHong Zhang /* build cache for off array entries formed */ 1570b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1571b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1572b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1573b5df2d14SHong Zhang b->garray = PETSC_NULL; 1574b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1575b5df2d14SHong Zhang 1576f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1577b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 157864a35ccbSBarry Smith b->setvalueslen = 0; 1579b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1580b5df2d14SHong Zhang #endif 1581b5df2d14SHong Zhang 1582b5df2d14SHong Zhang /* stuff used in block assembly */ 1583b5df2d14SHong Zhang b->barray = 0; 1584b5df2d14SHong Zhang 1585b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1586b5df2d14SHong Zhang b->lvec = 0; 1587b5df2d14SHong Zhang b->Mvctx = 0; 1588*40781036SHong Zhang b->slvec0 = 0; 1589*40781036SHong Zhang b->slvec0b = 0; 1590*40781036SHong Zhang b->slvec1 = 0; 1591*40781036SHong Zhang b->slvec1a = 0; 1592*40781036SHong Zhang b->slvec1b = 0; 1593*40781036SHong Zhang b->sMvctx = 0; 1594b5df2d14SHong Zhang 1595b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1596b5df2d14SHong Zhang b->rowindices = 0; 1597b5df2d14SHong Zhang b->rowvalues = 0; 1598b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1599b5df2d14SHong Zhang 1600b5df2d14SHong Zhang /* hash table stuff */ 1601b5df2d14SHong Zhang b->ht = 0; 1602b5df2d14SHong Zhang b->hd = 0; 1603b5df2d14SHong Zhang b->ht_size = 0; 1604b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1605b5df2d14SHong Zhang b->ht_fact = 0; 1606b5df2d14SHong Zhang b->ht_total_ct = 0; 1607b5df2d14SHong Zhang b->ht_insert_ct = 0; 1608b5df2d14SHong Zhang 1609b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1610b5df2d14SHong Zhang if (flg) { 1611f6275e2eSBarry Smith PetscReal fact = 1.39; 1612b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 161387828ca2SBarry Smith ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1614b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1615b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1616b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1617b5df2d14SHong Zhang } 1618b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1619b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1620b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1621b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1622b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1623b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1624b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1625b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1626b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1627b5df2d14SHong Zhang PetscFunctionReturn(0); 1628b5df2d14SHong Zhang } 1629273d9f13SBarry Smith EXTERN_C_END 1630b5df2d14SHong Zhang 16314a2ae208SSatish Balay #undef __FUNCT__ 16324a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1633b5df2d14SHong Zhang /*@C 1634b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1635b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1636b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1637b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1638b5df2d14SHong Zhang 1639b5df2d14SHong Zhang Collective on Mat 1640b5df2d14SHong Zhang 1641b5df2d14SHong Zhang Input Parameters: 1642b5df2d14SHong Zhang + A - the matrix 1643b5df2d14SHong Zhang . bs - size of blockk 1644b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1645b5df2d14SHong Zhang submatrix (same for all local rows) 1646b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 1647b5df2d14SHong Zhang of the in diagonal portion of the local (possibly different for each block 1648b5df2d14SHong Zhang row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1649b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1650b5df2d14SHong Zhang submatrix (same for all local rows). 1651b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1652b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1653b5df2d14SHong Zhang each block row) or PETSC_NULL. 1654b5df2d14SHong Zhang 1655b5df2d14SHong Zhang 1656b5df2d14SHong Zhang Options Database Keys: 1657b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1658b5df2d14SHong Zhang block calculations (much slower) 1659b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1660b5df2d14SHong Zhang 1661b5df2d14SHong Zhang Notes: 1662b5df2d14SHong Zhang 1663b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1664b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1665b5df2d14SHong Zhang 1666b5df2d14SHong Zhang Storage Information: 1667b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1668b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1669b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1670b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1671b5df2d14SHong Zhang 1672b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1673b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1674b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1675b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1676b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1677b5df2d14SHong Zhang 1678b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1679b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1680b5df2d14SHong Zhang 1681b5df2d14SHong Zhang .vb 1682b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1683b5df2d14SHong Zhang ------------------- 1684b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1685b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1686b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1687b5df2d14SHong Zhang ------------------- 1688b5df2d14SHong Zhang .ve 1689b5df2d14SHong Zhang 1690b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1691b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 1692b5df2d14SHong Zhang o (off-diagonal) submatrix. Note that the d and the o submatrices are 1693b5df2d14SHong Zhang stored simply in the MATSEQBAIJ format for compressed row storage. 1694b5df2d14SHong Zhang 1695b5df2d14SHong Zhang Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1696b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1697b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1698b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1699b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1700b5df2d14SHong Zhang matrices. 1701b5df2d14SHong Zhang 1702b5df2d14SHong Zhang Level: intermediate 1703b5df2d14SHong Zhang 1704b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1705b5df2d14SHong Zhang 1706b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1707b5df2d14SHong Zhang @*/ 1708b5df2d14SHong Zhang 1709b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1710b5df2d14SHong Zhang { 1711b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1712eb7adc28SSatish Balay int ierr,i,mbs,Mbs; 1713273d9f13SBarry Smith PetscTruth flg2; 1714b5df2d14SHong Zhang 1715b5df2d14SHong Zhang PetscFunctionBegin; 1716273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr); 1717273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 1718273d9f13SBarry Smith 1719b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1720b5df2d14SHong Zhang 1721b5df2d14SHong Zhang if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1722435da068SBarry Smith if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1723435da068SBarry Smith if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1724435da068SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1725435da068SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1726b5df2d14SHong Zhang if (d_nnz) { 1727b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1728b5df2d14SHong Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1729b5df2d14SHong Zhang } 1730b5df2d14SHong Zhang } 1731b5df2d14SHong Zhang if (o_nnz) { 1732b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1733b5df2d14SHong Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1734b5df2d14SHong Zhang } 1735b5df2d14SHong Zhang } 173619138431SHong Zhang B->preallocated = PETSC_TRUE; 173719138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 173819138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 17398a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 17408a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1741b5df2d14SHong Zhang 1742b5df2d14SHong Zhang b = (Mat_MPISBAIJ*)B->data; 1743b5df2d14SHong Zhang mbs = B->m/bs; 1744b5df2d14SHong Zhang Mbs = B->M/bs; 1745b5df2d14SHong Zhang if (mbs*bs != B->m) { 174619138431SHong Zhang SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1747b5df2d14SHong Zhang } 1748b5df2d14SHong Zhang 1749b5df2d14SHong Zhang b->bs = bs; 1750b5df2d14SHong Zhang b->bs2 = bs*bs; 1751b5df2d14SHong Zhang b->mbs = mbs; 1752b5df2d14SHong Zhang b->nbs = mbs; 1753b5df2d14SHong Zhang b->Mbs = Mbs; 1754b5df2d14SHong Zhang b->Nbs = Mbs; 1755b5df2d14SHong Zhang 1756b5df2d14SHong Zhang ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1757b5df2d14SHong Zhang b->rowners[0] = 0; 1758b5df2d14SHong Zhang for (i=2; i<=b->size; i++) { 1759b5df2d14SHong Zhang b->rowners[i] += b->rowners[i-1]; 1760b5df2d14SHong Zhang } 1761b5df2d14SHong Zhang b->rstart = b->rowners[b->rank]; 1762b5df2d14SHong Zhang b->rend = b->rowners[b->rank+1]; 1763b5df2d14SHong Zhang b->cstart = b->rstart; 1764b5df2d14SHong Zhang b->cend = b->rend; 1765b5df2d14SHong Zhang for (i=0; i<=b->size; i++) { 1766b5df2d14SHong Zhang b->rowners_bs[i] = b->rowners[i]*bs; 1767b5df2d14SHong Zhang } 1768b5df2d14SHong Zhang b->rstart_bs = b-> rstart*bs; 1769b5df2d14SHong Zhang b->rend_bs = b->rend*bs; 1770b5df2d14SHong Zhang 1771b5df2d14SHong Zhang b->cstart_bs = b->cstart*bs; 1772b5df2d14SHong Zhang b->cend_bs = b->cend*bs; 1773b5df2d14SHong Zhang 1774b5df2d14SHong Zhang 1775b5df2d14SHong Zhang ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1776b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 1777b5df2d14SHong Zhang ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1778b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 1779b5df2d14SHong Zhang 1780b5df2d14SHong Zhang /* build cache for off array entries formed */ 1781b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1782b5df2d14SHong Zhang 1783b5df2d14SHong Zhang PetscFunctionReturn(0); 1784b5df2d14SHong Zhang } 1785b5df2d14SHong Zhang 17864a2ae208SSatish Balay #undef __FUNCT__ 17874a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1788a30f8f8cSSatish Balay /*@C 1789a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1790a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1791a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1792a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1793a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1794a30f8f8cSSatish Balay 1795a30f8f8cSSatish Balay Collective on MPI_Comm 1796a30f8f8cSSatish Balay 1797a30f8f8cSSatish Balay Input Parameters: 1798a30f8f8cSSatish Balay + comm - MPI communicator 1799a30f8f8cSSatish Balay . bs - size of blockk 1800a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1801a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1802a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1803a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1804a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1805a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1806a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1807a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1808a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1809a30f8f8cSSatish Balay submatrix (same for all local rows) 1810a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 1811a30f8f8cSSatish Balay of the in diagonal portion of the local (possibly different for each block 1812a30f8f8cSSatish Balay row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1813a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1814a30f8f8cSSatish Balay submatrix (same for all local rows). 1815a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1816a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1817a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1818a30f8f8cSSatish Balay 1819a30f8f8cSSatish Balay Output Parameter: 1820a30f8f8cSSatish Balay . A - the matrix 1821a30f8f8cSSatish Balay 1822a30f8f8cSSatish Balay Options Database Keys: 1823a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1824a30f8f8cSSatish Balay block calculations (much slower) 1825a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1826a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1827a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1828a30f8f8cSSatish Balay 1829a30f8f8cSSatish Balay Notes: 1830a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1831a30f8f8cSSatish Balay (possibly both). 1832a30f8f8cSSatish Balay 1833a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1834a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1835a30f8f8cSSatish Balay 1836a30f8f8cSSatish Balay Storage Information: 1837a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1838a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1839a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1840a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1841a30f8f8cSSatish Balay 1842a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1843a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1844a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1845a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1846a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1847a30f8f8cSSatish Balay 1848a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1849a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1850a30f8f8cSSatish Balay 1851a30f8f8cSSatish Balay .vb 1852a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1853a30f8f8cSSatish Balay ------------------- 1854a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1855a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1856a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1857a30f8f8cSSatish Balay ------------------- 1858a30f8f8cSSatish Balay .ve 1859a30f8f8cSSatish Balay 1860a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1861a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 1862a30f8f8cSSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 1863a30f8f8cSSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 1864a30f8f8cSSatish Balay 1865a30f8f8cSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1866a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1867a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1868a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1869a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1870a30f8f8cSSatish Balay matrices. 1871a30f8f8cSSatish Balay 1872a30f8f8cSSatish Balay Level: intermediate 1873a30f8f8cSSatish Balay 1874a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1875a30f8f8cSSatish Balay 1876a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1877a30f8f8cSSatish Balay @*/ 1878a30f8f8cSSatish Balay 1879a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1880a30f8f8cSSatish Balay { 1881273d9f13SBarry Smith int ierr,size; 1882a30f8f8cSSatish Balay 1883a30f8f8cSSatish Balay PetscFunctionBegin; 1884b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1885273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1886273d9f13SBarry Smith if (size > 1) { 1887b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1888b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1889273d9f13SBarry Smith } else { 1890273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1891273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1892273d9f13SBarry Smith } 1893a30f8f8cSSatish Balay PetscFunctionReturn(0); 1894a30f8f8cSSatish Balay } 1895a30f8f8cSSatish Balay 1896a30f8f8cSSatish Balay 18974a2ae208SSatish Balay #undef __FUNCT__ 18984a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 1899a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1900a30f8f8cSSatish Balay { 1901a30f8f8cSSatish Balay Mat mat; 1902a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1903a30f8f8cSSatish Balay int ierr,len=0; 1904a30f8f8cSSatish Balay 1905a30f8f8cSSatish Balay PetscFunctionBegin; 1906a30f8f8cSSatish Balay *newmat = 0; 1907b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1908b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 1909273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 1910b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1911a30f8f8cSSatish Balay a->bs = oldmat->bs; 1912a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1913a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1914a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1915a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1916a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1917a30f8f8cSSatish Balay 1918a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1919a30f8f8cSSatish Balay a->rend = oldmat->rend; 1920a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1921a30f8f8cSSatish Balay a->cend = oldmat->cend; 1922a30f8f8cSSatish Balay a->size = oldmat->size; 1923a30f8f8cSSatish Balay a->rank = oldmat->rank; 1924a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1925a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1926a30f8f8cSSatish Balay a->rowindices = 0; 1927a30f8f8cSSatish Balay a->rowvalues = 0; 1928a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1929a30f8f8cSSatish Balay a->barray = 0; 1930a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1931a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1932a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1933a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1934a30f8f8cSSatish Balay 1935a30f8f8cSSatish Balay /* hash table stuff */ 1936a30f8f8cSSatish Balay a->ht = 0; 1937a30f8f8cSSatish Balay a->hd = 0; 1938a30f8f8cSSatish Balay a->ht_size = 0; 1939a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1940a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1941a30f8f8cSSatish Balay a->ht_total_ct = 0; 1942a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1943a30f8f8cSSatish Balay 194482502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 1945b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1946a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 1947a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 1948a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 1949a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1950a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 1951a30f8f8cSSatish Balay if (oldmat->colmap) { 1952a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1953a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1954a30f8f8cSSatish Balay #else 195582502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 1956b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 1957a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 1958a30f8f8cSSatish Balay #endif 1959a30f8f8cSSatish Balay } else a->colmap = 0; 1960a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 196182502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 1962b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 1963a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 1964a30f8f8cSSatish Balay } else a->garray = 0; 1965a30f8f8cSSatish Balay 1966a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1967b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 1968a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1969a30f8f8cSSatish Balay 1970b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 1971a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1972b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 1973a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1974b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 1975b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1976a30f8f8cSSatish Balay *newmat = mat; 1977a30f8f8cSSatish Balay PetscFunctionReturn(0); 1978a30f8f8cSSatish Balay } 1979a30f8f8cSSatish Balay 1980a30f8f8cSSatish Balay #include "petscsys.h" 1981a30f8f8cSSatish Balay 1982273d9f13SBarry Smith EXTERN_C_BEGIN 19834a2ae208SSatish Balay #undef __FUNCT__ 19844a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 1985b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 1986a30f8f8cSSatish Balay { 1987a30f8f8cSSatish Balay Mat A; 1988a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 198987828ca2SBarry Smith PetscScalar *vals,*buf; 1990a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1991a30f8f8cSSatish Balay MPI_Status status; 1992a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 1993a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 1994a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 1995a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 1996a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 1997a30f8f8cSSatish Balay 1998a30f8f8cSSatish Balay PetscFunctionBegin; 1999b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2000a30f8f8cSSatish Balay 2001a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2002a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2003a30f8f8cSSatish Balay if (!rank) { 2004b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2005a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2006552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2007a30f8f8cSSatish Balay if (header[3] < 0) { 200829bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2009a30f8f8cSSatish Balay } 2010a30f8f8cSSatish Balay } 2011a30f8f8cSSatish Balay 2012a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2013a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2014a30f8f8cSSatish Balay 201529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2016a30f8f8cSSatish Balay 2017a30f8f8cSSatish Balay /* 2018a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2019a30f8f8cSSatish Balay divisible by the blocksize 2020a30f8f8cSSatish Balay */ 2021a30f8f8cSSatish Balay Mbs = M/bs; 2022a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2023a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2024a30f8f8cSSatish Balay else Mbs++; 2025a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2026b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2027a30f8f8cSSatish Balay } 2028a30f8f8cSSatish Balay 2029a30f8f8cSSatish Balay /* determine ownership of all rows */ 2030a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2031a30f8f8cSSatish Balay m = mbs*bs; 2032b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2033a30f8f8cSSatish Balay browners = rowners + size + 1; 2034a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2035a30f8f8cSSatish Balay rowners[0] = 0; 2036a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2037a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2038a30f8f8cSSatish Balay rstart = rowners[rank]; 2039a30f8f8cSSatish Balay rend = rowners[rank+1]; 2040a30f8f8cSSatish Balay 2041a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 204282502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2043a30f8f8cSSatish Balay if (!rank) { 2044b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2045a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2046a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 204782502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2048a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2049a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2050a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2051a30f8f8cSSatish Balay } else { 2052a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2053a30f8f8cSSatish Balay } 2054a30f8f8cSSatish Balay 20550222edb1SHong Zhang if (!rank) { /* procs[0] */ 2056a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 205782502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2058a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2059a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2060a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2061a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2062a30f8f8cSSatish Balay } 2063a30f8f8cSSatish Balay } 2064a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2065a30f8f8cSSatish Balay 2066a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2067a30f8f8cSSatish Balay maxnz = 0; 2068a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2069a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2070a30f8f8cSSatish Balay } 207182502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2072a30f8f8cSSatish Balay 2073a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2074a30f8f8cSSatish Balay nz = procsnz[0]; 207582502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2076a30f8f8cSSatish Balay mycols = ibuf; 2077a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2078a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2079a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2080a30f8f8cSSatish Balay 2081a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2082a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2083a30f8f8cSSatish Balay nz = procsnz[i]; 2084a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2085a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2086a30f8f8cSSatish Balay } 2087a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2088a30f8f8cSSatish Balay if (size != 1) { 2089a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2090a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2091a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2092a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2093a30f8f8cSSatish Balay } 2094a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20950222edb1SHong Zhang } else { /* procs[i], i>0 */ 2096a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2097a30f8f8cSSatish Balay nz = 0; 2098a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2099a30f8f8cSSatish Balay nz += locrowlens[i]; 2100a30f8f8cSSatish Balay } 210182502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2102a30f8f8cSSatish Balay mycols = ibuf; 2103a30f8f8cSSatish Balay /* receive message of column indices*/ 2104a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2105a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 210629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2107a30f8f8cSSatish Balay } 2108a30f8f8cSSatish Balay 2109a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 211082502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2111a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 211282502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2113a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2114a30f8f8cSSatish Balay masked1 = mask + Mbs; 2115a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2116a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2117a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2118a30f8f8cSSatish Balay dcount = 0; 2119a30f8f8cSSatish Balay odcount = 0; 2120a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2121a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2122a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21230222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2124a30f8f8cSSatish Balay if (!mask[tmp]) { 2125a30f8f8cSSatish Balay mask[tmp] = 1; 21260222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21270222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2128a30f8f8cSSatish Balay } 2129a30f8f8cSSatish Balay } 2130a30f8f8cSSatish Balay rowcount++; 2131a30f8f8cSSatish Balay } 2132a30f8f8cSSatish Balay 21330222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21340222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2135a30f8f8cSSatish Balay 2136a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2137a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2138a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2139a30f8f8cSSatish Balay } 2140a30f8f8cSSatish Balay 2141a30f8f8cSSatish Balay /* create our matrix */ 21427e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2143bfe19f1aSHong Zhang CHKERRQ(ierr); 2144a30f8f8cSSatish Balay A = *newmat; 2145273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay 2147a30f8f8cSSatish Balay if (!rank) { 214887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2149a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2150a30f8f8cSSatish Balay nz = procsnz[0]; 2151a30f8f8cSSatish Balay vals = buf; 2152a30f8f8cSSatish Balay mycols = ibuf; 2153a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2154a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2155a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2156a30f8f8cSSatish Balay 2157a30f8f8cSSatish Balay /* insert into matrix */ 2158a30f8f8cSSatish Balay jj = rstart*bs; 2159a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21607e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay mycols += locrowlens[i]; 2162a30f8f8cSSatish Balay vals += locrowlens[i]; 2163a30f8f8cSSatish Balay jj++; 2164a30f8f8cSSatish Balay } 21657e06b45fSHong Zhang 2166a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2167a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2168a30f8f8cSSatish Balay nz = procsnz[i]; 2169a30f8f8cSSatish Balay vals = buf; 2170a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2171a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay } 2173a30f8f8cSSatish Balay /* the last proc */ 2174a30f8f8cSSatish Balay if (size != 1){ 2175a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2176a30f8f8cSSatish Balay vals = buf; 2177a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2178a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2179a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay } 2181a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21827e06b45fSHong Zhang 2183a30f8f8cSSatish Balay } else { 2184a30f8f8cSSatish Balay /* receive numeric values */ 218587828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2186a30f8f8cSSatish Balay 2187a30f8f8cSSatish Balay /* receive message of values*/ 2188a30f8f8cSSatish Balay vals = buf; 2189a30f8f8cSSatish Balay mycols = ibuf; 2190a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2191a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 219229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2193a30f8f8cSSatish Balay 2194a30f8f8cSSatish Balay /* insert into matrix */ 2195a30f8f8cSSatish Balay jj = rstart*bs; 2196a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2197a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2198a30f8f8cSSatish Balay mycols += locrowlens[i]; 2199a30f8f8cSSatish Balay vals += locrowlens[i]; 2200a30f8f8cSSatish Balay jj++; 2201a30f8f8cSSatish Balay } 2202a30f8f8cSSatish Balay } 22037e06b45fSHong Zhang 2204a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2206a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2208a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2209a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2211a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay PetscFunctionReturn(0); 2213a30f8f8cSSatish Balay } 2214273d9f13SBarry Smith EXTERN_C_END 2215a30f8f8cSSatish Balay 22164a2ae208SSatish Balay #undef __FUNCT__ 22174a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2218a30f8f8cSSatish Balay /*@ 2219a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2220a30f8f8cSSatish Balay 2221a30f8f8cSSatish Balay Input Parameters: 2222a30f8f8cSSatish Balay . mat - the matrix 2223a30f8f8cSSatish Balay . fact - factor 2224a30f8f8cSSatish Balay 2225a30f8f8cSSatish Balay Collective on Mat 2226a30f8f8cSSatish Balay 2227a30f8f8cSSatish Balay Level: advanced 2228a30f8f8cSSatish Balay 2229a30f8f8cSSatish Balay Notes: 2230a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2231a30f8f8cSSatish Balay 2232a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2233a30f8f8cSSatish Balay 2234a30f8f8cSSatish Balay .seealso: MatSetOption() 2235a30f8f8cSSatish Balay @*/ 2236a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2237a30f8f8cSSatish Balay { 2238a30f8f8cSSatish Balay PetscFunctionBegin; 223929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 224096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2241a30f8f8cSSatish Balay } 224224d5174aSHong Zhang 22434a2ae208SSatish Balay #undef __FUNCT__ 22444a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 224524d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 224624d5174aSHong Zhang { 224724d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2248f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2249ca54ac64SHong Zhang PetscReal atmp; 225087828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2251ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2252154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 225387828ca2SBarry Smith PetscScalar *va; 22548a1c53f2SBarry Smith MatScalar *ba; 2255f4c0e9e4SHong Zhang MPI_Status stat; 225624d5174aSHong Zhang 225724d5174aSHong Zhang PetscFunctionBegin; 2258d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2259f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2260f4c0e9e4SHong Zhang 2261ac355199SBarry Smith ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 2262ac355199SBarry Smith ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 2263f4c0e9e4SHong Zhang 2264f4c0e9e4SHong Zhang bs = a->bs; 2265f4c0e9e4SHong Zhang mbs = a->mbs; 2266f4c0e9e4SHong Zhang Mbs = a->Mbs; 2267f4c0e9e4SHong Zhang ba = b->a; 2268f4c0e9e4SHong Zhang bi = b->i; 2269f4c0e9e4SHong Zhang bj = b->j; 2270ca54ac64SHong Zhang /* 2271f4c0e9e4SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 2272f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2273ca54ac64SHong Zhang */ 2274f4c0e9e4SHong Zhang 2275f4c0e9e4SHong Zhang /* find ownerships */ 2276f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2277f4c0e9e4SHong Zhang /* 227804d41228SHong Zhang if (!rank){ 227904d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2280f4c0e9e4SHong Zhang } 2281f4c0e9e4SHong Zhang */ 2282f4c0e9e4SHong Zhang 2283f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 228482502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2285ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2286f4c0e9e4SHong Zhang 2287f4c0e9e4SHong Zhang /* row_max for B */ 2288b8475685SHong Zhang if (rank != size-1){ 2289f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2290f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2291f4c0e9e4SHong Zhang brow = bs*i; 2292f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2293f4c0e9e4SHong Zhang bcol = bs*(*bj); 2294f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2295ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 229604d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2297ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2298f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2299f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2300ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2301f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2302ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2303f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2304f4c0e9e4SHong Zhang } 2305f4c0e9e4SHong Zhang } 2306f4c0e9e4SHong Zhang bj++; 2307f4c0e9e4SHong Zhang } 2308f4c0e9e4SHong Zhang } 230904d41228SHong Zhang /* 231004d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 231104d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 231204d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 231304d41228SHong Zhang */ 2314f4c0e9e4SHong Zhang 2315f4c0e9e4SHong Zhang /* send values to its owners */ 2316f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2317f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2318ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2319d7d1e502SBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr); 2320ca54ac64SHong Zhang /* 232104d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 2322f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2323ca54ac64SHong Zhang */ 2324ca54ac64SHong Zhang } 2325f4c0e9e4SHong Zhang } 2326f4c0e9e4SHong Zhang 2327f4c0e9e4SHong Zhang /* receive values */ 2328ca54ac64SHong Zhang if (rank){ 2329f4c0e9e4SHong Zhang rvalues = work; 2330ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2331f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 2332d7d1e502SBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr); 2333f4c0e9e4SHong Zhang /* process values */ 2334f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2335ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2336f4c0e9e4SHong Zhang } 2337ca54ac64SHong Zhang /* 233804d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 2339f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2340ca54ac64SHong Zhang */ 2341f4c0e9e4SHong Zhang } 2342ca54ac64SHong Zhang } 2343f4c0e9e4SHong Zhang 2344f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2345ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 234624d5174aSHong Zhang PetscFunctionReturn(0); 234724d5174aSHong Zhang } 23482798e883SHong Zhang 23492798e883SHong Zhang #undef __FUNCT__ 23502798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2351c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 23522798e883SHong Zhang { 23532798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 23542798e883SHong Zhang int ierr; 2355d05c616dSSatish Balay PetscScalar mone=-1.0; 23562798e883SHong Zhang Vec lvec1,bb1; 23572798e883SHong Zhang 23582798e883SHong Zhang PetscFunctionBegin; 235991723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 23602798e883SHong Zhang if (mat->bs > 1) 23612798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 23622798e883SHong Zhang 2363c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 23642798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2365c14dc6b6SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr); 23662798e883SHong Zhang its--; 23672798e883SHong Zhang } 23682798e883SHong Zhang 23692798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 23702798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 23712798e883SHong Zhang while (its--){ 23722798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 23732798e883SHong Zhang 23742798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 23752798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 23762798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 23772798e883SHong Zhang 23782798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 23792798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 23802798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 23812798e883SHong Zhang 23822798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 23832798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 23842798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 23852798e883SHong Zhang 23862798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 23872798e883SHong Zhang 2388c14dc6b6SHong Zhang /* diagonal sweep */ 2389862afb7bSHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr); 23902798e883SHong Zhang } 23912798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 23922798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2393c14dc6b6SHong Zhang } else { 2394c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2395c14dc6b6SHong Zhang } 23962798e883SHong Zhang PetscFunctionReturn(0); 23972798e883SHong Zhang } 23982798e883SHong Zhang 2399