173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 11a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 12a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 1387828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *); 1487828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode); 1587828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode); 1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 36a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51a30f8f8cSSatish Balay int ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66a30f8f8cSSatish Balay int ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay /* 76a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 77a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 78a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 79a30f8f8cSSatish Balay length of colmap equals the global matrix length. 80a30f8f8cSSatish Balay */ 814a2ae208SSatish Balay #undef __FUNCT__ 824a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private" 83a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 84a30f8f8cSSatish Balay { 85a30f8f8cSSatish Balay PetscFunctionBegin; 8629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 88a30f8f8cSSatish Balay } 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define CHUNKSIZE 10 91a30f8f8cSSatish Balay 92a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 93a30f8f8cSSatish Balay { \ 94a30f8f8cSSatish Balay \ 95a30f8f8cSSatish Balay brow = row/bs; \ 96a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 97a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 98a30f8f8cSSatish Balay bcol = col/bs; \ 99a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 100a30f8f8cSSatish Balay low = 0; high = nrow; \ 101a30f8f8cSSatish Balay while (high-low > 3) { \ 102a30f8f8cSSatish Balay t = (low+high)/2; \ 103a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 104a30f8f8cSSatish Balay else low = t; \ 105a30f8f8cSSatish Balay } \ 106a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 107a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 108a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 109a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 110a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 111a30f8f8cSSatish Balay else *bap = value; \ 112a30f8f8cSSatish Balay goto a_noinsert; \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11629bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 117a30f8f8cSSatish Balay if (nrow >= rmax) { \ 118a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 119a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 120a30f8f8cSSatish Balay MatScalar *new_a; \ 121a30f8f8cSSatish Balay \ 12229bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 123a30f8f8cSSatish Balay \ 124a30f8f8cSSatish Balay /* malloc new storage space */ \ 125a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12682502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 128a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 129a30f8f8cSSatish Balay \ 130a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 131a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 132a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 135a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13787828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 139a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay /* free up old matrix storage */ \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 143a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 144a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 145a30f8f8cSSatish Balay } \ 146a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 147a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 148a30f8f8cSSatish Balay \ 149a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 150a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 151b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 152a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 153a30f8f8cSSatish Balay a->reallocs++; \ 154a30f8f8cSSatish Balay a->s_nz++; \ 155a30f8f8cSSatish Balay } \ 156a30f8f8cSSatish Balay N = nrow++ - 1; \ 157a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 158a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 159a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 160a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 163a30f8f8cSSatish Balay rp[_i] = bcol; \ 164a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 165a30f8f8cSSatish Balay a_noinsert:; \ 166a30f8f8cSSatish Balay ailen[brow] = nrow; \ 167a30f8f8cSSatish Balay } 168a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 169a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 170a30f8f8cSSatish Balay { \ 171a30f8f8cSSatish Balay brow = row/bs; \ 172a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 173a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 174a30f8f8cSSatish Balay bcol = col/bs; \ 175a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 176a30f8f8cSSatish Balay low = 0; high = nrow; \ 177a30f8f8cSSatish Balay while (high-low > 3) { \ 178a30f8f8cSSatish Balay t = (low+high)/2; \ 179a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 180a30f8f8cSSatish Balay else low = t; \ 181a30f8f8cSSatish Balay } \ 182a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 183a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 184a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 185a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 186a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 187a30f8f8cSSatish Balay else *bap = value; \ 188a30f8f8cSSatish Balay goto b_noinsert; \ 189a30f8f8cSSatish Balay } \ 190a30f8f8cSSatish Balay } \ 191a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19229bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 193a30f8f8cSSatish Balay if (nrow >= rmax) { \ 194a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 195a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 196a30f8f8cSSatish Balay MatScalar *new_a; \ 197a30f8f8cSSatish Balay \ 19829bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 199a30f8f8cSSatish Balay \ 200a30f8f8cSSatish Balay /* malloc new storage space */ \ 201a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20282502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 204a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 205a30f8f8cSSatish Balay \ 206a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 207a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 208a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 211a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 215a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay /* free up old matrix storage */ \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 219a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 220a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 221a30f8f8cSSatish Balay } \ 222a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 223a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 224a30f8f8cSSatish Balay \ 225a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 226a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 227b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 228a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 229a30f8f8cSSatish Balay b->reallocs++; \ 230a30f8f8cSSatish Balay b->nz++; \ 231a30f8f8cSSatish Balay } \ 232a30f8f8cSSatish Balay N = nrow++ - 1; \ 233a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 234a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 235a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 236a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 237a30f8f8cSSatish Balay } \ 238a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 239a30f8f8cSSatish Balay rp[_i] = bcol; \ 240a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 241a30f8f8cSSatish Balay b_noinsert:; \ 242a30f8f8cSSatish Balay bilen[brow] = nrow; \ 243a30f8f8cSSatish Balay } 244a30f8f8cSSatish Balay #endif 245a30f8f8cSSatish Balay 246a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 24987828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 250a30f8f8cSSatish Balay { 251a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 252a30f8f8cSSatish Balay int ierr,i,N = m*n; 253a30f8f8cSSatish Balay MatScalar *vsingle; 254a30f8f8cSSatish Balay 255a30f8f8cSSatish Balay PetscFunctionBegin; 256a30f8f8cSSatish Balay if (N > b->setvalueslen) { 257a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 259a30f8f8cSSatish Balay b->setvalueslen = N; 260a30f8f8cSSatish Balay } 261a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 262a30f8f8cSSatish Balay 263a30f8f8cSSatish Balay for (i=0; i<N; i++) { 264a30f8f8cSSatish Balay vsingle[i] = v[i]; 265a30f8f8cSSatish Balay } 266a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 267a30f8f8cSSatish Balay PetscFunctionReturn(0); 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 27287828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 273a30f8f8cSSatish Balay { 274a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 275a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 276a30f8f8cSSatish Balay MatScalar *vsingle; 277a30f8f8cSSatish Balay 278a30f8f8cSSatish Balay PetscFunctionBegin; 279a30f8f8cSSatish Balay if (N > b->setvalueslen) { 280a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 28182502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 282a30f8f8cSSatish Balay b->setvalueslen = N; 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 285a30f8f8cSSatish Balay for (i=0; i<N; i++) { 286a30f8f8cSSatish Balay vsingle[i] = v[i]; 287a30f8f8cSSatish Balay } 288a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 289a30f8f8cSSatish Balay PetscFunctionReturn(0); 290a30f8f8cSSatish Balay } 291a30f8f8cSSatish Balay 2924a2ae208SSatish Balay #undef __FUNCT__ 2934a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 29487828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 295a30f8f8cSSatish Balay { 296a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 297a30f8f8cSSatish Balay int ierr,i,N = m*n; 298a30f8f8cSSatish Balay MatScalar *vsingle; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay PetscFunctionBegin; 30129bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3024d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay 3054a2ae208SSatish Balay #undef __FUNCT__ 3064a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 30787828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 308a30f8f8cSSatish Balay { 309a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 310a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 311a30f8f8cSSatish Balay MatScalar *vsingle; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 31429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3154d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay #endif 318a30f8f8cSSatish Balay 319a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 320a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 321a30f8f8cSSatish Balay */ 3224a2ae208SSatish Balay #undef __FUNCT__ 3234a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 324a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 325a30f8f8cSSatish Balay { 326a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 327a30f8f8cSSatish Balay MatScalar value; 328b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 329a30f8f8cSSatish Balay int ierr,i,j,row,col; 330b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 331a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 332a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 333a30f8f8cSSatish Balay 334a30f8f8cSSatish Balay /* Some Variables required in the macro */ 335a30f8f8cSSatish Balay Mat A = baij->A; 336a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 337a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 338a30f8f8cSSatish Balay MatScalar *aa=a->a; 339a30f8f8cSSatish Balay 340a30f8f8cSSatish Balay Mat B = baij->B; 341a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 342a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 343a30f8f8cSSatish Balay MatScalar *ba=b->a; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 346a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 347a30f8f8cSSatish Balay MatScalar *ap,*bap; 348a30f8f8cSSatish Balay 349a30f8f8cSSatish Balay /* for stash */ 350f65c83cfSHong Zhang int n_loc, *in_loc=0; 351f65c83cfSHong Zhang MatScalar *v_loc=0; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay PetscFunctionBegin; 354a30f8f8cSSatish Balay 355a30f8f8cSSatish Balay if(!baij->donotstash){ 35682502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35782502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 358a30f8f8cSSatish Balay } 359a30f8f8cSSatish Balay 360a30f8f8cSSatish Balay for (i=0; i<m; i++) { 361a30f8f8cSSatish Balay if (im[i] < 0) continue; 362a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 363b5df2d14SHong Zhang if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 364a30f8f8cSSatish Balay #endif 365a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 366a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 367a30f8f8cSSatish Balay for (j=0; j<n; j++) { 368f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 369a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 370a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 371a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 372a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 373a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 374a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 375a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 376a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 377a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 378b5df2d14SHong Zhang else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 379a30f8f8cSSatish Balay #endif 380a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 381a30f8f8cSSatish Balay if (mat->was_assembled) { 382a30f8f8cSSatish Balay if (!baij->colmap) { 383a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 386a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 38771730473SSatish Balay col = col - 1; 388a30f8f8cSSatish Balay #else 38971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 390a30f8f8cSSatish Balay #endif 391a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 392a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 393a30f8f8cSSatish Balay col = in[j]; 394a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 395a30f8f8cSSatish Balay B = baij->B; 396a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 397a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 398a30f8f8cSSatish Balay ba=b->a; 39971730473SSatish Balay } else col += in[j]%bs; 400a30f8f8cSSatish Balay } else col = in[j]; 401a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 402a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 403a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay } else { /* off processor entry */ 407a30f8f8cSSatish Balay if (!baij->donotstash) { 408a30f8f8cSSatish Balay n_loc = 0; 409a30f8f8cSSatish Balay for (j=0; j<n; j++){ 410f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 411a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 412a30f8f8cSSatish Balay if (roworiented) { 413a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 414a30f8f8cSSatish Balay } else { 415a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay n_loc++; 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay } 422a30f8f8cSSatish Balay } 423a30f8f8cSSatish Balay 424a30f8f8cSSatish Balay if(!baij->donotstash){ 425a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 426a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay PetscFunctionReturn(0); 429a30f8f8cSSatish Balay } 430a30f8f8cSSatish Balay 4314a2ae208SSatish Balay #undef __FUNCT__ 4324a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 433a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 434a30f8f8cSSatish Balay { 435a30f8f8cSSatish Balay PetscFunctionBegin; 43629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 43796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 438a30f8f8cSSatish Balay } 439a30f8f8cSSatish Balay 440a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 441a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 442a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 443a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 4444a2ae208SSatish Balay #undef __FUNCT__ 4454a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 446a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 447a30f8f8cSSatish Balay { 448a30f8f8cSSatish Balay PetscFunctionBegin; 44929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 451a30f8f8cSSatish Balay } 452a30f8f8cSSatish Balay 4534a2ae208SSatish Balay #undef __FUNCT__ 4544a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 455a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 456a30f8f8cSSatish Balay { 457a30f8f8cSSatish Balay PetscFunctionBegin; 45829bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 460a30f8f8cSSatish Balay } 461a30f8f8cSSatish Balay 4624a2ae208SSatish Balay #undef __FUNCT__ 4634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 46487828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v) 465a30f8f8cSSatish Balay { 466f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 467a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 468a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 469a30f8f8cSSatish Balay 470a30f8f8cSSatish Balay PetscFunctionBegin; 471a30f8f8cSSatish Balay for (i=0; i<m; i++) { 47229bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 473b5df2d14SHong Zhang if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 474a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 475a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 476a30f8f8cSSatish Balay for (j=0; j<n; j++) { 47729bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 478b5df2d14SHong Zhang if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 479a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 480a30f8f8cSSatish Balay col = idxn[j] - bscstart; 481c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 482a30f8f8cSSatish Balay } else { 483a30f8f8cSSatish Balay if (!baij->colmap) { 484a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 485a30f8f8cSSatish Balay } 486a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 487a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 488a30f8f8cSSatish Balay data --; 489a30f8f8cSSatish Balay #else 490a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 491a30f8f8cSSatish Balay #endif 492a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 493a30f8f8cSSatish Balay else { 494a30f8f8cSSatish Balay col = data + idxn[j]%bs; 495c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay } 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay } else { 50029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 501a30f8f8cSSatish Balay } 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay PetscFunctionReturn(0); 504a30f8f8cSSatish Balay } 505a30f8f8cSSatish Balay 5064a2ae208SSatish Balay #undef __FUNCT__ 5074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 508a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 509a30f8f8cSSatish Balay { 510a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 511bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 512bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 513a30f8f8cSSatish Balay int ierr; 514a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 515a30f8f8cSSatish Balay 516a30f8f8cSSatish Balay PetscFunctionBegin; 517a30f8f8cSSatish Balay if (baij->size == 1) { 518a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 519a30f8f8cSSatish Balay } else { 520a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 521f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 522a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 523a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 524a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 525a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 526a30f8f8cSSatish Balay /* 527a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 528a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 529a30f8f8cSSatish Balay */ 530d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 531a30f8f8cSSatish Balay /* 532a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 533a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 534a30f8f8cSSatish Balay 535a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 536a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 537a30f8f8cSSatish Balay } else { 53829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay PetscFunctionReturn(0); 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay 544a30f8f8cSSatish Balay /* 545a30f8f8cSSatish Balay Creates the hash table, and sets the table 546a30f8f8cSSatish Balay This table is created only once. 547a30f8f8cSSatish Balay If new entried need to be added to the matrix 548a30f8f8cSSatish Balay then the hash table has to be destroyed and 549a30f8f8cSSatish Balay recreated. 550a30f8f8cSSatish Balay */ 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 553a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 554a30f8f8cSSatish Balay { 555a30f8f8cSSatish Balay PetscFunctionBegin; 55629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 558a30f8f8cSSatish Balay } 559a30f8f8cSSatish Balay 5604a2ae208SSatish Balay #undef __FUNCT__ 5614a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 562a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 563a30f8f8cSSatish Balay { 564a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 565a30f8f8cSSatish Balay int ierr,nstash,reallocs; 566a30f8f8cSSatish Balay InsertMode addv; 567a30f8f8cSSatish Balay 568a30f8f8cSSatish Balay PetscFunctionBegin; 569a30f8f8cSSatish Balay if (baij->donotstash) { 570a30f8f8cSSatish Balay PetscFunctionReturn(0); 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 574a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 575a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 57629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 577a30f8f8cSSatish Balay } 578a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 579a30f8f8cSSatish Balay 580a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 581a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 582a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 583b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 584a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 585b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 591a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 594a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 595a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 596a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 597a30f8f8cSSatish Balay int *row,*col,other_disassembled; 598a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 599a30f8f8cSSatish Balay MatScalar *val; 600a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 6015222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES) 6025222a1afSHong Zhang PetscTruth flag; 6035222a1afSHong Zhang #endif 604a30f8f8cSSatish Balay 605a30f8f8cSSatish Balay PetscFunctionBegin; 606a30f8f8cSSatish Balay 607a30f8f8cSSatish Balay if (!baij->donotstash) { 608a30f8f8cSSatish Balay while (1) { 609a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 610a30f8f8cSSatish Balay /* 611a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 612a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 613a30f8f8cSSatish Balay */ 614a30f8f8cSSatish Balay if (!flg) break; 615a30f8f8cSSatish Balay 616a30f8f8cSSatish Balay for (i=0; i<n;) { 617a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 618a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 619a30f8f8cSSatish Balay if (j < n) ncols = j-i; 620a30f8f8cSSatish Balay else ncols = n-i; 621a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 622a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 623a30f8f8cSSatish Balay i = j; 624a30f8f8cSSatish Balay } 625a30f8f8cSSatish Balay } 626a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 627a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 628a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 629a30f8f8cSSatish Balay restore the original flags */ 630a30f8f8cSSatish Balay r1 = baij->roworiented; 631a30f8f8cSSatish Balay r2 = a->roworiented; 632a30f8f8cSSatish Balay r3 = b->roworiented; 633a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 634a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 635a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 636a30f8f8cSSatish Balay while (1) { 637a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 638a30f8f8cSSatish Balay if (!flg) break; 639a30f8f8cSSatish Balay 640a30f8f8cSSatish Balay for (i=0; i<n;) { 641a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 642a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 643a30f8f8cSSatish Balay if (j < n) ncols = j-i; 644a30f8f8cSSatish Balay else ncols = n-i; 645a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 646a30f8f8cSSatish Balay i = j; 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 650a30f8f8cSSatish Balay baij->roworiented = r1; 651a30f8f8cSSatish Balay a->roworiented = r2; 652a30f8f8cSSatish Balay b->roworiented = r3; 653a30f8f8cSSatish Balay } 654a30f8f8cSSatish Balay 655a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 656a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 659a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 660a30f8f8cSSatish Balay /* 661a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 662a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 663a30f8f8cSSatish Balay */ 664a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 665a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 666a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 667c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 668a30f8f8cSSatish Balay } 669a30f8f8cSSatish Balay } 670a30f8f8cSSatish Balay 671a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 67240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 673a30f8f8cSSatish Balay } 674a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 675a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 676a30f8f8cSSatish Balay 677a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 678a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 679f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 680a30f8f8cSSatish Balay baij->ht_total_ct = 0; 681a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay #endif 684a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 685c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 686a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 687a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay 690a30f8f8cSSatish Balay if (baij->rowvalues) { 691a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 692a30f8f8cSSatish Balay baij->rowvalues = 0; 693a30f8f8cSSatish Balay } 6945222a1afSHong Zhang 6955222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES) 696e82a3eeeSBarry Smith ierr = PetscOptionsHasName(mat,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr); 6975222a1afSHong Zhang if (flag) { ierr = MatUseSpooles_MPISBAIJ(mat);CHKERRQ(ierr); } 6985222a1afSHong Zhang #endif 699a30f8f8cSSatish Balay PetscFunctionReturn(0); 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay 7024a2ae208SSatish Balay #undef __FUNCT__ 7034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 704b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 705a30f8f8cSSatish Balay { 706a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 707fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 708a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 709b0a32e0cSBarry Smith PetscViewer sviewer; 710f3ef73ceSBarry Smith PetscViewerFormat format; 711a30f8f8cSSatish Balay 712a30f8f8cSSatish Balay PetscFunctionBegin; 713b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 714fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 715a30f8f8cSSatish Balay if (isascii) { 716b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 717*456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 718a30f8f8cSSatish Balay MatInfo info; 719a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 720a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 721b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 722b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 723a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 724a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 725b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 726a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 727b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 728b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 729a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 730a30f8f8cSSatish Balay PetscFunctionReturn(0); 731fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 732b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 733a30f8f8cSSatish Balay PetscFunctionReturn(0); 734a30f8f8cSSatish Balay } 735a30f8f8cSSatish Balay } 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay if (isdraw) { 738b0a32e0cSBarry Smith PetscDraw draw; 739a30f8f8cSSatish Balay PetscTruth isnull; 740b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 741b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 742a30f8f8cSSatish Balay } 743a30f8f8cSSatish Balay 744a30f8f8cSSatish Balay if (size == 1) { 745e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 746a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 747a30f8f8cSSatish Balay } else { 748a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 749a30f8f8cSSatish Balay Mat A; 75065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 75165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 752b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 753a30f8f8cSSatish Balay MatScalar *a; 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay if (!rank) { 756bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 757a30f8f8cSSatish Balay } else { 758f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 759a30f8f8cSSatish Balay } 760b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 761a30f8f8cSSatish Balay 762a30f8f8cSSatish Balay /* copy over the A part */ 76365d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 764a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 76582502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 766a30f8f8cSSatish Balay 767a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 768a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 769a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 770a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 771a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 772a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 773a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 774a30f8f8cSSatish Balay col++; a += bs; 775a30f8f8cSSatish Balay } 776a30f8f8cSSatish Balay } 777a30f8f8cSSatish Balay } 778a30f8f8cSSatish Balay /* copy over the B part */ 77965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 78065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 781a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 782a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 783a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 784a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 785a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 786a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 787a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 788a30f8f8cSSatish Balay col++; a += bs; 789a30f8f8cSSatish Balay } 790a30f8f8cSSatish Balay } 791a30f8f8cSSatish Balay } 792a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 793a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 794a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 795a30f8f8cSSatish Balay /* 796a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 797b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 798a30f8f8cSSatish Balay */ 799b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 80065d70643SHong Zhang if (!rank) { 801e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 802a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 803a30f8f8cSSatish Balay } 804b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 805a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay PetscFunctionReturn(0); 808a30f8f8cSSatish Balay } 809a30f8f8cSSatish Balay 8104a2ae208SSatish Balay #undef __FUNCT__ 8114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 812b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 813a30f8f8cSSatish Balay { 814a30f8f8cSSatish Balay int ierr; 815a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 816a30f8f8cSSatish Balay 817a30f8f8cSSatish Balay PetscFunctionBegin; 818b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 819fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 820b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 821fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 822a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 823a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 824a30f8f8cSSatish Balay } else { 82529bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay PetscFunctionReturn(0); 828a30f8f8cSSatish Balay } 829a30f8f8cSSatish Balay 8304a2ae208SSatish Balay #undef __FUNCT__ 8314a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 832a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 833a30f8f8cSSatish Balay { 834a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 835a30f8f8cSSatish Balay int ierr; 836a30f8f8cSSatish Balay 837a30f8f8cSSatish Balay PetscFunctionBegin; 838a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 839b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 840a30f8f8cSSatish Balay #endif 841a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 842a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 843a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 844a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 845a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 846a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 847a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 848a30f8f8cSSatish Balay #else 849a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 850a30f8f8cSSatish Balay #endif 851a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 852a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 853a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 85440781036SHong Zhang if (baij->slvec0) { 85540781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 85640781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 85740781036SHong Zhang } 85840781036SHong Zhang if (baij->slvec1) { 85940781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 86040781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 86140781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 86240781036SHong Zhang } 86340781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 864a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 865a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 866a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 867a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 868a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 869a30f8f8cSSatish Balay #endif 870a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 871a30f8f8cSSatish Balay PetscFunctionReturn(0); 872a30f8f8cSSatish Balay } 873a30f8f8cSSatish Balay 8744a2ae208SSatish Balay #undef __FUNCT__ 875a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 876a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 877a9d4b620SHong Zhang { 878a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 8794024bf32SHong Zhang int ierr,nt,mbs=a->mbs,bs=a->bs; 880a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 881a9d4b620SHong Zhang 882a9d4b620SHong Zhang PetscFunctionBegin; 883a9d4b620SHong Zhang /* 884a9d4b620SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD," _1comm is called ...\n"); 885a9d4b620SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 886a9d4b620SHong Zhang */ 887a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 888a9d4b620SHong Zhang if (nt != A->n) { 889a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 890a9d4b620SHong Zhang } 891a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 892a9d4b620SHong Zhang if (nt != A->m) { 893a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 894a9d4b620SHong Zhang } 895a9d4b620SHong Zhang 896a9d4b620SHong Zhang /* diagonal part */ 897a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 898a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 899a9d4b620SHong Zhang 900a9d4b620SHong Zhang /* subdiagonal part */ 901a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 902a9d4b620SHong Zhang 903a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 904a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 905a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 906a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 907a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 908a9d4b620SHong Zhang 909a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 910a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 911a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 912a9d4b620SHong Zhang 913a9d4b620SHong Zhang /* supperdiagonal part */ 914a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 915a9d4b620SHong Zhang 916a9d4b620SHong Zhang PetscFunctionReturn(0); 917a9d4b620SHong Zhang } 918a9d4b620SHong Zhang 919a9d4b620SHong Zhang #undef __FUNCT__ 92040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 92140781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 922a30f8f8cSSatish Balay { 923a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 924a30f8f8cSSatish Balay int ierr,nt; 925a30f8f8cSSatish Balay 926a30f8f8cSSatish Balay PetscFunctionBegin; 927a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 928b5df2d14SHong Zhang if (nt != A->n) { 92929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 930a30f8f8cSSatish Balay } 931a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 932b5df2d14SHong Zhang if (nt != A->m) { 93329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 934a30f8f8cSSatish Balay } 93565d70643SHong Zhang 936b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 937b941877fSHong Zhang /* do diagonal part */ 938b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 939b941877fSHong Zhang /* do supperdiagonal part */ 940b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 941b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 942b941877fSHong Zhang /* do subdiagonal part */ 943b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 944b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 945b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 94665d70643SHong Zhang 947a30f8f8cSSatish Balay PetscFunctionReturn(0); 948a30f8f8cSSatish Balay } 949a30f8f8cSSatish Balay 9504a2ae208SSatish Balay #undef __FUNCT__ 9514a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 952a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 953a30f8f8cSSatish Balay { 954de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 955a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 956a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 957a9d4b620SHong Zhang 958a9d4b620SHong Zhang PetscFunctionBegin; 959a9d4b620SHong Zhang /* 960a9d4b620SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD," MatMultAdd is called ...\n"); 961a9d4b620SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 962a9d4b620SHong Zhang */ 963a9d4b620SHong Zhang /* diagonal part */ 964a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 965a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 966a9d4b620SHong Zhang 967a9d4b620SHong Zhang /* subdiagonal part */ 968a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 969a9d4b620SHong Zhang 970a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 971a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 972a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 973a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 974a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 975a9d4b620SHong Zhang 976a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 977a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 978a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 979a9d4b620SHong Zhang 980a9d4b620SHong Zhang /* supperdiagonal part */ 981a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 982a9d4b620SHong Zhang 983a9d4b620SHong Zhang PetscFunctionReturn(0); 984a9d4b620SHong Zhang } 985a9d4b620SHong Zhang 986a9d4b620SHong Zhang #undef __FUNCT__ 987a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 988a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 989a9d4b620SHong Zhang { 990a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 991aa482183SHong Zhang int ierr; 992a30f8f8cSSatish Balay 993a30f8f8cSSatish Balay PetscFunctionBegin; 994b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 995b941877fSHong Zhang /* do diagonal part */ 996b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 997b941877fSHong Zhang /* do supperdiagonal part */ 998b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 999de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1000de8b6608SHong Zhang 1001b941877fSHong Zhang /* do subdiagonal part */ 1002a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1003a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1004a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1005aa482183SHong Zhang 1006a30f8f8cSSatish Balay PetscFunctionReturn(0); 1007a30f8f8cSSatish Balay } 1008a30f8f8cSSatish Balay 10094a2ae208SSatish Balay #undef __FUNCT__ 10104a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1011a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1012a30f8f8cSSatish Balay { 1013a30f8f8cSSatish Balay PetscFunctionBegin; 101429bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 101596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1016a30f8f8cSSatish Balay } 1017a30f8f8cSSatish Balay 10184a2ae208SSatish Balay #undef __FUNCT__ 10194a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1020a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1021a30f8f8cSSatish Balay { 1022a30f8f8cSSatish Balay PetscFunctionBegin; 102329bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 102496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1025a30f8f8cSSatish Balay } 1026a30f8f8cSSatish Balay 1027a30f8f8cSSatish Balay /* 1028a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1029a30f8f8cSSatish Balay diagonal block 1030a30f8f8cSSatish Balay */ 10314a2ae208SSatish Balay #undef __FUNCT__ 10324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1033a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1034a30f8f8cSSatish Balay { 1035a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1036a30f8f8cSSatish Balay int ierr; 1037a30f8f8cSSatish Balay 1038a30f8f8cSSatish Balay PetscFunctionBegin; 103929bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1040a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1041a30f8f8cSSatish Balay PetscFunctionReturn(0); 1042a30f8f8cSSatish Balay } 1043a30f8f8cSSatish Balay 10444a2ae208SSatish Balay #undef __FUNCT__ 10454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 104687828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A) 1047a30f8f8cSSatish Balay { 1048a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1049a30f8f8cSSatish Balay int ierr; 1050a30f8f8cSSatish Balay 1051a30f8f8cSSatish Balay PetscFunctionBegin; 1052a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1053a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1054a30f8f8cSSatish Balay PetscFunctionReturn(0); 1055a30f8f8cSSatish Balay } 1056a30f8f8cSSatish Balay 10574a2ae208SSatish Balay #undef __FUNCT__ 10584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 105987828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1060a30f8f8cSSatish Balay { 1061a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 106287828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1063a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1064a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1065a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1066a30f8f8cSSatish Balay 1067a30f8f8cSSatish Balay PetscFunctionBegin; 106829bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1069a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1070a30f8f8cSSatish Balay 1071a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1072a30f8f8cSSatish Balay /* 1073a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1074a30f8f8cSSatish Balay */ 1075a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1076a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1077a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1078a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1079a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1080a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1081a30f8f8cSSatish Balay } 108287828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1083a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1084a30f8f8cSSatish Balay } 1085a30f8f8cSSatish Balay 108629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1087a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1088a30f8f8cSSatish Balay 1089a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1090a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1091a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1092a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1093a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1094a30f8f8cSSatish Balay nztot = nzA + nzB; 1095a30f8f8cSSatish Balay 1096a30f8f8cSSatish Balay cmap = mat->garray; 1097a30f8f8cSSatish Balay if (v || idx) { 1098a30f8f8cSSatish Balay if (nztot) { 1099a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1100a30f8f8cSSatish Balay int imark = -1; 1101a30f8f8cSSatish Balay if (v) { 1102a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1103a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1104a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1105a30f8f8cSSatish Balay else break; 1106a30f8f8cSSatish Balay } 1107a30f8f8cSSatish Balay imark = i; 1108a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1109a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1110a30f8f8cSSatish Balay } 1111a30f8f8cSSatish Balay if (idx) { 1112a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1113a30f8f8cSSatish Balay if (imark > -1) { 1114a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1115a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1116a30f8f8cSSatish Balay } 1117a30f8f8cSSatish Balay } else { 1118a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1119a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1120a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1121a30f8f8cSSatish Balay else break; 1122a30f8f8cSSatish Balay } 1123a30f8f8cSSatish Balay imark = i; 1124a30f8f8cSSatish Balay } 1125a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1126a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1127a30f8f8cSSatish Balay } 1128a30f8f8cSSatish Balay } else { 1129a30f8f8cSSatish Balay if (idx) *idx = 0; 1130a30f8f8cSSatish Balay if (v) *v = 0; 1131a30f8f8cSSatish Balay } 1132a30f8f8cSSatish Balay } 1133a30f8f8cSSatish Balay *nz = nztot; 1134a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1135a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1136a30f8f8cSSatish Balay PetscFunctionReturn(0); 1137a30f8f8cSSatish Balay } 1138a30f8f8cSSatish Balay 11394a2ae208SSatish Balay #undef __FUNCT__ 11404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 114187828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1142a30f8f8cSSatish Balay { 1143a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1144a30f8f8cSSatish Balay 1145a30f8f8cSSatish Balay PetscFunctionBegin; 1146a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 114729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1148a30f8f8cSSatish Balay } 1149a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1150a30f8f8cSSatish Balay PetscFunctionReturn(0); 1151a30f8f8cSSatish Balay } 1152a30f8f8cSSatish Balay 11534a2ae208SSatish Balay #undef __FUNCT__ 11544a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1155a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1156a30f8f8cSSatish Balay { 1157a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1158a30f8f8cSSatish Balay 1159a30f8f8cSSatish Balay PetscFunctionBegin; 1160a30f8f8cSSatish Balay *bs = baij->bs; 1161a30f8f8cSSatish Balay PetscFunctionReturn(0); 1162a30f8f8cSSatish Balay } 1163a30f8f8cSSatish Balay 11644a2ae208SSatish Balay #undef __FUNCT__ 11654a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1166a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1167a30f8f8cSSatish Balay { 1168a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1169a30f8f8cSSatish Balay int ierr; 1170a30f8f8cSSatish Balay 1171a30f8f8cSSatish Balay PetscFunctionBegin; 1172a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1173a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay PetscFunctionReturn(0); 1175a30f8f8cSSatish Balay } 1176a30f8f8cSSatish Balay 11774a2ae208SSatish Balay #undef __FUNCT__ 11784a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1179a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1180a30f8f8cSSatish Balay { 1181a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1182a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1183a30f8f8cSSatish Balay int ierr; 1184a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1185a30f8f8cSSatish Balay 1186a30f8f8cSSatish Balay PetscFunctionBegin; 1187f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1188a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1189a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1190a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1191a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1192a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1193a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1194a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1195a30f8f8cSSatish Balay info->nz_used = isend[0]; 1196a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1197a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1198a30f8f8cSSatish Balay info->memory = isend[3]; 1199a30f8f8cSSatish Balay info->mallocs = isend[4]; 1200a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1201d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1202a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1203a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1204a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1205a30f8f8cSSatish Balay info->memory = irecv[3]; 1206a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1207a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1208d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1209a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1210a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1211a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1212a30f8f8cSSatish Balay info->memory = irecv[3]; 1213a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1214a30f8f8cSSatish Balay } else { 121529bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1216a30f8f8cSSatish Balay } 1217f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1218f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1219f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1220f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1221a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1222a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1223a30f8f8cSSatish Balay info->factor_mallocs = 0; 1224a30f8f8cSSatish Balay PetscFunctionReturn(0); 1225a30f8f8cSSatish Balay } 1226a30f8f8cSSatish Balay 12274a2ae208SSatish Balay #undef __FUNCT__ 12284a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1229a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1230a30f8f8cSSatish Balay { 1231a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1232a30f8f8cSSatish Balay int ierr; 1233a30f8f8cSSatish Balay 1234a30f8f8cSSatish Balay PetscFunctionBegin; 1235e98b92d7SKris Buschelman switch (op) { 1236e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1237e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1238e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1239e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1240e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1241e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1242e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1243a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1244a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1245e98b92d7SKris Buschelman break; 1246e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1247a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1248a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1249a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1250e98b92d7SKris Buschelman break; 1251e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1252e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1253e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1254d03495bdSKris Buschelman case MAT_USE_SINGLE_PRECISION_SOLVES: 1255b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1256e98b92d7SKris Buschelman break; 1257e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1258a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1259a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1260a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1261e98b92d7SKris Buschelman break; 1262e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1263a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1264e98b92d7SKris Buschelman break; 1265e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 126629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1267e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1268a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1269e98b92d7SKris Buschelman break; 1270e98b92d7SKris Buschelman default: 127129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1272a30f8f8cSSatish Balay } 1273a30f8f8cSSatish Balay PetscFunctionReturn(0); 1274a30f8f8cSSatish Balay } 1275a30f8f8cSSatish Balay 12764a2ae208SSatish Balay #undef __FUNCT__ 12778115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 12788115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B) 1279a30f8f8cSSatish Balay { 12808115998fSBarry Smith int ierr; 1281a30f8f8cSSatish Balay PetscFunctionBegin; 1282999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 12838115998fSBarry Smith PetscFunctionReturn(0); 1284a30f8f8cSSatish Balay } 1285a30f8f8cSSatish Balay 12864a2ae208SSatish Balay #undef __FUNCT__ 12874a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1288a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1289a30f8f8cSSatish Balay { 1290a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1291a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1292a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1293a30f8f8cSSatish Balay 1294a30f8f8cSSatish Balay PetscFunctionBegin; 1295a30f8f8cSSatish Balay if (ll != rr) { 129629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1297a30f8f8cSSatish Balay } 1298a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1299a30f8f8cSSatish Balay if (rr) { 1300a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 130129bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1302a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1303a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1304a30f8f8cSSatish Balay /*} if (ll) { */ 1305a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 130629bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1307a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1308a30f8f8cSSatish Balay /* } */ 1309a30f8f8cSSatish Balay /* scale the diagonal block */ 1310a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1311a30f8f8cSSatish Balay 1312a30f8f8cSSatish Balay /* if (rr) { */ 1313a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1314a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1315a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1316a30f8f8cSSatish Balay } 1317a30f8f8cSSatish Balay 1318a30f8f8cSSatish Balay PetscFunctionReturn(0); 1319a30f8f8cSSatish Balay } 1320a30f8f8cSSatish Balay 13214a2ae208SSatish Balay #undef __FUNCT__ 13224a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 132387828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag) 1324a30f8f8cSSatish Balay { 1325a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1326a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 132735d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work,row; 1328a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1329a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1330a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1331a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1332a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1333a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1334a30f8f8cSSatish Balay IS istmp; 133535d8aa7fSBarry Smith PetscTruth found; 1336a30f8f8cSSatish Balay 1337a30f8f8cSSatish Balay PetscFunctionBegin; 1338a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1339a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1340a30f8f8cSSatish Balay 1341a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 134282502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 1343a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1344a30f8f8cSSatish Balay procs = nprocs + size; 1345b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 1346a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1347a30f8f8cSSatish Balay idx = rows[i]; 134835d8aa7fSBarry Smith found = PETSC_FALSE; 1349a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1350a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 135135d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 1352a30f8f8cSSatish Balay } 1353a30f8f8cSSatish Balay } 135429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 1355a30f8f8cSSatish Balay } 1356a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1357a30f8f8cSSatish Balay 1358a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 135982502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 1360a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1361a30f8f8cSSatish Balay nmax = work[rank]; 1362a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1363a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1364a30f8f8cSSatish Balay 1365a30f8f8cSSatish Balay /* post receives: */ 1366b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 1367b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 1368a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1369a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1370a30f8f8cSSatish Balay } 1371a30f8f8cSSatish Balay 1372a30f8f8cSSatish Balay /* do sends: 1373a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1374a30f8f8cSSatish Balay the ith processor 1375a30f8f8cSSatish Balay */ 1376b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 1377b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1378b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 1379a30f8f8cSSatish Balay starts[0] = 0; 1380a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1381a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1382a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1383a30f8f8cSSatish Balay } 1384a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1385a30f8f8cSSatish Balay 1386a30f8f8cSSatish Balay starts[0] = 0; 1387a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1388a30f8f8cSSatish Balay count = 0; 1389a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1390a30f8f8cSSatish Balay if (procs[i]) { 1391a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1392a30f8f8cSSatish Balay } 1393a30f8f8cSSatish Balay } 1394a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1395a30f8f8cSSatish Balay 1396a30f8f8cSSatish Balay base = owners[rank]*bs; 1397a30f8f8cSSatish Balay 1398a30f8f8cSSatish Balay /* wait on receives */ 1399b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 1400a30f8f8cSSatish Balay source = lens + nrecvs; 1401a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1402a30f8f8cSSatish Balay while (count) { 1403a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1404a30f8f8cSSatish Balay /* unpack receives into our local space */ 1405a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1406a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1407a30f8f8cSSatish Balay lens[imdex] = n; 1408a30f8f8cSSatish Balay slen += n; 1409a30f8f8cSSatish Balay count--; 1410a30f8f8cSSatish Balay } 1411a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1412a30f8f8cSSatish Balay 1413a30f8f8cSSatish Balay /* move the data into the send scatter */ 1414b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 1415a30f8f8cSSatish Balay count = 0; 1416a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1417a30f8f8cSSatish Balay values = rvalues + i*nmax; 1418a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1419a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1420a30f8f8cSSatish Balay } 1421a30f8f8cSSatish Balay } 1422a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1423a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1424a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1425a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1426a30f8f8cSSatish Balay 1427a30f8f8cSSatish Balay /* actually zap the local rows */ 1428a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1429b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1430a30f8f8cSSatish Balay 1431a30f8f8cSSatish Balay /* 1432a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1433a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1434a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1435a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1436a30f8f8cSSatish Balay 1437a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1438a30f8f8cSSatish Balay */ 1439a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1440ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1441a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1442a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1443a30f8f8cSSatish Balay } else if (diag) { 1444a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1445a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 144629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1447a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1448a30f8f8cSSatish Balay } 1449a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1450a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1451a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1452a30f8f8cSSatish Balay } 1453a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1454a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1455a30f8f8cSSatish Balay } else { 1456a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1457a30f8f8cSSatish Balay } 1458a30f8f8cSSatish Balay 1459a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1460a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1461a30f8f8cSSatish Balay 1462a30f8f8cSSatish Balay /* wait on sends */ 1463a30f8f8cSSatish Balay if (nsends) { 146482502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1465a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1466a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1467a30f8f8cSSatish Balay } 1468a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1469a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1470a30f8f8cSSatish Balay 1471a30f8f8cSSatish Balay PetscFunctionReturn(0); 1472a30f8f8cSSatish Balay } 1473a30f8f8cSSatish Balay 14744a2ae208SSatish Balay #undef __FUNCT__ 14754a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1476a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1477a30f8f8cSSatish Balay { 1478a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1479a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1480a30f8f8cSSatish Balay static int called = 0; 1481a30f8f8cSSatish Balay int ierr; 1482a30f8f8cSSatish Balay 1483a30f8f8cSSatish Balay PetscFunctionBegin; 1484a30f8f8cSSatish Balay if (!a->rank) { 1485a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1486a30f8f8cSSatish Balay } 1487a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1488a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1489a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1490a30f8f8cSSatish Balay PetscFunctionReturn(0); 1491a30f8f8cSSatish Balay } 1492a30f8f8cSSatish Balay 14934a2ae208SSatish Balay #undef __FUNCT__ 14944a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1495a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1496a30f8f8cSSatish Balay { 1497f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1498a30f8f8cSSatish Balay int ierr; 1499a30f8f8cSSatish Balay 1500a30f8f8cSSatish Balay PetscFunctionBegin; 1501a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1502a30f8f8cSSatish Balay PetscFunctionReturn(0); 1503a30f8f8cSSatish Balay } 1504a30f8f8cSSatish Balay 1505a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1506a30f8f8cSSatish Balay 15074a2ae208SSatish Balay #undef __FUNCT__ 15084a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1509a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1510a30f8f8cSSatish Balay { 1511a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1512a30f8f8cSSatish Balay Mat a,b,c,d; 1513a30f8f8cSSatish Balay PetscTruth flg; 1514a30f8f8cSSatish Balay int ierr; 1515a30f8f8cSSatish Balay 1516a30f8f8cSSatish Balay PetscFunctionBegin; 1517b5df2d14SHong Zhang ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr); 1518b5df2d14SHong Zhang if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1519a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1520a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1521a30f8f8cSSatish Balay 1522a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1523a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1524a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1525a30f8f8cSSatish Balay } 1526a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1527a30f8f8cSSatish Balay PetscFunctionReturn(0); 1528a30f8f8cSSatish Balay } 1529a30f8f8cSSatish Balay 15304a2ae208SSatish Balay #undef __FUNCT__ 15314a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1532273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1533273d9f13SBarry Smith { 1534273d9f13SBarry Smith int ierr; 1535273d9f13SBarry Smith 1536273d9f13SBarry Smith PetscFunctionBegin; 1537273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1538273d9f13SBarry Smith PetscFunctionReturn(0); 1539273d9f13SBarry Smith } 1540a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1541a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1542a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1543a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1544a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1545a9d4b620SHong Zhang MatMult_MPISBAIJ, 1546a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1547a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1548a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1549a30f8f8cSSatish Balay 0, 1550a30f8f8cSSatish Balay 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay 0, 1553a30f8f8cSSatish Balay 0, 1554a30f8f8cSSatish Balay 0, 15552798e883SHong Zhang MatRelax_MPISBAIJ, 1556a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1557a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1558a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1559a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1560a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1561a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1562a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1563a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1564a30f8f8cSSatish Balay 0, 1565a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1566a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1567a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1568a30f8f8cSSatish Balay 0, 1569a30f8f8cSSatish Balay 0, 1570a30f8f8cSSatish Balay 0, 1571a30f8f8cSSatish Balay 0, 1572273d9f13SBarry Smith MatSetUpPreallocation_MPISBAIJ, 1573b5df2d14SHong Zhang 0, 1574a30f8f8cSSatish Balay 0, 1575a30f8f8cSSatish Balay 0, 1576a30f8f8cSSatish Balay 0, 1577a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1578a30f8f8cSSatish Balay 0, 1579a30f8f8cSSatish Balay 0, 1580a30f8f8cSSatish Balay 0, 1581a30f8f8cSSatish Balay 0, 1582a30f8f8cSSatish Balay 0, 1583a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1584a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1585a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1586a30f8f8cSSatish Balay 0, 1587a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1588a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1589a30f8f8cSSatish Balay 0, 1590a30f8f8cSSatish Balay 0, 1591a30f8f8cSSatish Balay 0, 1592a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1593a30f8f8cSSatish Balay 0, 1594a30f8f8cSSatish Balay 0, 1595a30f8f8cSSatish Balay 0, 1596a30f8f8cSSatish Balay 0, 1597a30f8f8cSSatish Balay 0, 1598a30f8f8cSSatish Balay 0, 1599a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1600a30f8f8cSSatish Balay 0, 1601a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1602a30f8f8cSSatish Balay 0, 1603a30f8f8cSSatish Balay 0, 1604a30f8f8cSSatish Balay 0, 16058a124369SBarry Smith MatGetPetscMaps_Petsc, 160624d5174aSHong Zhang 0, 160724d5174aSHong Zhang 0, 160824d5174aSHong Zhang 0, 160924d5174aSHong Zhang 0, 161024d5174aSHong Zhang 0, 161124d5174aSHong Zhang 0, 161224d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1613a30f8f8cSSatish Balay 1614a30f8f8cSSatish Balay 1615a30f8f8cSSatish Balay EXTERN_C_BEGIN 16164a2ae208SSatish Balay #undef __FUNCT__ 16174a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1618a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1619a30f8f8cSSatish Balay { 1620a30f8f8cSSatish Balay PetscFunctionBegin; 1621a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1622a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1623a30f8f8cSSatish Balay PetscFunctionReturn(0); 1624a30f8f8cSSatish Balay } 1625a30f8f8cSSatish Balay EXTERN_C_END 1626a30f8f8cSSatish Balay 1627273d9f13SBarry Smith EXTERN_C_BEGIN 16284a2ae208SSatish Balay #undef __FUNCT__ 16294a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1630b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1631b5df2d14SHong Zhang { 1632b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1633ca54ac64SHong Zhang int ierr; 1634b5df2d14SHong Zhang PetscTruth flg; 1635b5df2d14SHong Zhang 1636b5df2d14SHong Zhang PetscFunctionBegin; 1637b5df2d14SHong Zhang 1638b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1639b0a32e0cSBarry Smith B->data = (void*)b; 1640b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1641b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1642b5df2d14SHong Zhang 1643b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1644b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1645b5df2d14SHong Zhang B->mapping = 0; 1646b5df2d14SHong Zhang B->factor = 0; 1647b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1648b5df2d14SHong Zhang 1649b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1650b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1651b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1652b5df2d14SHong Zhang 1653b5df2d14SHong Zhang /* build local table of row and column ownerships */ 165482502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1655273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1656273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1657b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1658b5df2d14SHong Zhang 1659b5df2d14SHong Zhang /* build cache for off array entries formed */ 1660b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1661b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1662b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1663b5df2d14SHong Zhang b->garray = PETSC_NULL; 1664b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1665b5df2d14SHong Zhang 1666f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1667b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 166864a35ccbSBarry Smith b->setvalueslen = 0; 1669b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1670b5df2d14SHong Zhang #endif 1671b5df2d14SHong Zhang 1672b5df2d14SHong Zhang /* stuff used in block assembly */ 1673b5df2d14SHong Zhang b->barray = 0; 1674b5df2d14SHong Zhang 1675b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1676b5df2d14SHong Zhang b->lvec = 0; 1677b5df2d14SHong Zhang b->Mvctx = 0; 167840781036SHong Zhang b->slvec0 = 0; 167940781036SHong Zhang b->slvec0b = 0; 168040781036SHong Zhang b->slvec1 = 0; 168140781036SHong Zhang b->slvec1a = 0; 168240781036SHong Zhang b->slvec1b = 0; 168340781036SHong Zhang b->sMvctx = 0; 1684b5df2d14SHong Zhang 1685b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1686b5df2d14SHong Zhang b->rowindices = 0; 1687b5df2d14SHong Zhang b->rowvalues = 0; 1688b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1689b5df2d14SHong Zhang 1690b5df2d14SHong Zhang /* hash table stuff */ 1691b5df2d14SHong Zhang b->ht = 0; 1692b5df2d14SHong Zhang b->hd = 0; 1693b5df2d14SHong Zhang b->ht_size = 0; 1694b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1695b5df2d14SHong Zhang b->ht_fact = 0; 1696b5df2d14SHong Zhang b->ht_total_ct = 0; 1697b5df2d14SHong Zhang b->ht_insert_ct = 0; 1698b5df2d14SHong Zhang 1699e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1700b5df2d14SHong Zhang if (flg) { 1701f6275e2eSBarry Smith PetscReal fact = 1.39; 1702b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1703e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1704b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1705b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1706b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1707b5df2d14SHong Zhang } 1708b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1709b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1710b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1711b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1712b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1713b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1714b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1715b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1716b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1717b5df2d14SHong Zhang PetscFunctionReturn(0); 1718b5df2d14SHong Zhang } 1719273d9f13SBarry Smith EXTERN_C_END 1720b5df2d14SHong Zhang 17214a2ae208SSatish Balay #undef __FUNCT__ 17224a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1723b5df2d14SHong Zhang /*@C 1724b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1725b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1726b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1727b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1728b5df2d14SHong Zhang 1729b5df2d14SHong Zhang Collective on Mat 1730b5df2d14SHong Zhang 1731b5df2d14SHong Zhang Input Parameters: 1732b5df2d14SHong Zhang + A - the matrix 1733b5df2d14SHong Zhang . bs - size of blockk 1734b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1735b5df2d14SHong Zhang submatrix (same for all local rows) 1736b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 17376d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 17386d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 17396d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1740b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1741b5df2d14SHong Zhang submatrix (same for all local rows). 1742b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1743b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1744b5df2d14SHong Zhang each block row) or PETSC_NULL. 1745b5df2d14SHong Zhang 1746b5df2d14SHong Zhang 1747b5df2d14SHong Zhang Options Database Keys: 1748b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1749b5df2d14SHong Zhang block calculations (much slower) 1750b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1751b5df2d14SHong Zhang 1752b5df2d14SHong Zhang Notes: 1753b5df2d14SHong Zhang 1754b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1755b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1756b5df2d14SHong Zhang 1757b5df2d14SHong Zhang Storage Information: 1758b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1759b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1760b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1761b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1762b5df2d14SHong Zhang 1763b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1764b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1765b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1766b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1767b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1768b5df2d14SHong Zhang 1769b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1770b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1771b5df2d14SHong Zhang 1772b5df2d14SHong Zhang .vb 1773b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1774b5df2d14SHong Zhang ------------------- 1775b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1776b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1777b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1778b5df2d14SHong Zhang ------------------- 1779b5df2d14SHong Zhang .ve 1780b5df2d14SHong Zhang 1781b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1782b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 17836d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 17846d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1785b5df2d14SHong Zhang 17866d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 17876d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1788b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1789b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1790b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1791b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1792b5df2d14SHong Zhang matrices. 1793b5df2d14SHong Zhang 1794b5df2d14SHong Zhang Level: intermediate 1795b5df2d14SHong Zhang 1796b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1797b5df2d14SHong Zhang 1798b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1799b5df2d14SHong Zhang @*/ 1800b5df2d14SHong Zhang 1801b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1802b5df2d14SHong Zhang { 1803b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1804eb7adc28SSatish Balay int ierr,i,mbs,Mbs; 1805273d9f13SBarry Smith PetscTruth flg2; 1806b5df2d14SHong Zhang 1807b5df2d14SHong Zhang PetscFunctionBegin; 1808273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr); 1809273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 1810273d9f13SBarry Smith 1811e82a3eeeSBarry Smith ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1812b5df2d14SHong Zhang 1813b5df2d14SHong Zhang if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1814435da068SBarry Smith if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1815435da068SBarry Smith if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1816435da068SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1817435da068SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1818b5df2d14SHong Zhang if (d_nnz) { 1819b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1820b5df2d14SHong Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1821b5df2d14SHong Zhang } 1822b5df2d14SHong Zhang } 1823b5df2d14SHong Zhang if (o_nnz) { 1824b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1825b5df2d14SHong Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1826b5df2d14SHong Zhang } 1827b5df2d14SHong Zhang } 182819138431SHong Zhang B->preallocated = PETSC_TRUE; 182919138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 183019138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 18318a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 18328a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1833b5df2d14SHong Zhang 1834b5df2d14SHong Zhang b = (Mat_MPISBAIJ*)B->data; 1835b5df2d14SHong Zhang mbs = B->m/bs; 1836b5df2d14SHong Zhang Mbs = B->M/bs; 1837b5df2d14SHong Zhang if (mbs*bs != B->m) { 183819138431SHong Zhang SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1839b5df2d14SHong Zhang } 1840b5df2d14SHong Zhang 1841b5df2d14SHong Zhang b->bs = bs; 1842b5df2d14SHong Zhang b->bs2 = bs*bs; 1843b5df2d14SHong Zhang b->mbs = mbs; 1844b5df2d14SHong Zhang b->nbs = mbs; 1845b5df2d14SHong Zhang b->Mbs = Mbs; 1846b5df2d14SHong Zhang b->Nbs = Mbs; 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1849b5df2d14SHong Zhang b->rowners[0] = 0; 1850b5df2d14SHong Zhang for (i=2; i<=b->size; i++) { 1851b5df2d14SHong Zhang b->rowners[i] += b->rowners[i-1]; 1852b5df2d14SHong Zhang } 1853b5df2d14SHong Zhang b->rstart = b->rowners[b->rank]; 1854b5df2d14SHong Zhang b->rend = b->rowners[b->rank+1]; 1855b5df2d14SHong Zhang b->cstart = b->rstart; 1856b5df2d14SHong Zhang b->cend = b->rend; 1857b5df2d14SHong Zhang for (i=0; i<=b->size; i++) { 1858b5df2d14SHong Zhang b->rowners_bs[i] = b->rowners[i]*bs; 1859b5df2d14SHong Zhang } 1860b5df2d14SHong Zhang b->rstart_bs = b-> rstart*bs; 1861b5df2d14SHong Zhang b->rend_bs = b->rend*bs; 1862b5df2d14SHong Zhang 1863b5df2d14SHong Zhang b->cstart_bs = b->cstart*bs; 1864b5df2d14SHong Zhang b->cend_bs = b->cend*bs; 1865b5df2d14SHong Zhang 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1868b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 1869b5df2d14SHong Zhang ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1870b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 1871b5df2d14SHong Zhang 1872b5df2d14SHong Zhang /* build cache for off array entries formed */ 1873b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1874b5df2d14SHong Zhang 1875b5df2d14SHong Zhang PetscFunctionReturn(0); 1876b5df2d14SHong Zhang } 1877b5df2d14SHong Zhang 18784a2ae208SSatish Balay #undef __FUNCT__ 18794a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1880a30f8f8cSSatish Balay /*@C 1881a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1882a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1883a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1884a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1885a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1886a30f8f8cSSatish Balay 1887a30f8f8cSSatish Balay Collective on MPI_Comm 1888a30f8f8cSSatish Balay 1889a30f8f8cSSatish Balay Input Parameters: 1890a30f8f8cSSatish Balay + comm - MPI communicator 1891a30f8f8cSSatish Balay . bs - size of blockk 1892a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1893a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1894a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1895a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1896a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1897a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1898a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1899a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1900a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1901a30f8f8cSSatish Balay submatrix (same for all local rows) 1902a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19036d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19046d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19056d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1906a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1907a30f8f8cSSatish Balay submatrix (same for all local rows). 1908a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1909a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1910a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1911a30f8f8cSSatish Balay 1912a30f8f8cSSatish Balay Output Parameter: 1913a30f8f8cSSatish Balay . A - the matrix 1914a30f8f8cSSatish Balay 1915a30f8f8cSSatish Balay Options Database Keys: 1916a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1917a30f8f8cSSatish Balay block calculations (much slower) 1918a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1919a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1920a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1921a30f8f8cSSatish Balay 1922a30f8f8cSSatish Balay Notes: 1923a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1924a30f8f8cSSatish Balay (possibly both). 1925a30f8f8cSSatish Balay 1926a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1927a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1928a30f8f8cSSatish Balay 1929a30f8f8cSSatish Balay Storage Information: 1930a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1931a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1932a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1933a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1934a30f8f8cSSatish Balay 1935a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1936a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1937a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1938a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1939a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1940a30f8f8cSSatish Balay 1941a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1942a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1943a30f8f8cSSatish Balay 1944a30f8f8cSSatish Balay .vb 1945a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1946a30f8f8cSSatish Balay ------------------- 1947a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1948a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1949a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1950a30f8f8cSSatish Balay ------------------- 1951a30f8f8cSSatish Balay .ve 1952a30f8f8cSSatish Balay 1953a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1954a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19556d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19566d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1957a30f8f8cSSatish Balay 19586d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19596d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1960a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1961a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1962a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1963a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1964a30f8f8cSSatish Balay matrices. 1965a30f8f8cSSatish Balay 1966a30f8f8cSSatish Balay Level: intermediate 1967a30f8f8cSSatish Balay 1968a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1969a30f8f8cSSatish Balay 1970a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1971a30f8f8cSSatish Balay @*/ 1972a30f8f8cSSatish Balay 1973a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1974a30f8f8cSSatish Balay { 1975273d9f13SBarry Smith int ierr,size; 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay PetscFunctionBegin; 1978b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1979273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1980273d9f13SBarry Smith if (size > 1) { 1981b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1982b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1983273d9f13SBarry Smith } else { 1984273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1985273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1986273d9f13SBarry Smith } 1987a30f8f8cSSatish Balay PetscFunctionReturn(0); 1988a30f8f8cSSatish Balay } 1989a30f8f8cSSatish Balay 1990a30f8f8cSSatish Balay 19914a2ae208SSatish Balay #undef __FUNCT__ 19924a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 1993a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1994a30f8f8cSSatish Balay { 1995a30f8f8cSSatish Balay Mat mat; 1996a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1997a30f8f8cSSatish Balay int ierr,len=0; 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay PetscFunctionBegin; 2000a30f8f8cSSatish Balay *newmat = 0; 2001b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2002b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 2003273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 2004b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2005a30f8f8cSSatish Balay a->bs = oldmat->bs; 2006a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2007a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2008a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2009a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2010a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2011a30f8f8cSSatish Balay 2012a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2013a30f8f8cSSatish Balay a->rend = oldmat->rend; 2014a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2015a30f8f8cSSatish Balay a->cend = oldmat->cend; 2016a30f8f8cSSatish Balay a->size = oldmat->size; 2017a30f8f8cSSatish Balay a->rank = oldmat->rank; 2018a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2019a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2020a30f8f8cSSatish Balay a->rowindices = 0; 2021a30f8f8cSSatish Balay a->rowvalues = 0; 2022a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2023a30f8f8cSSatish Balay a->barray = 0; 2024a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2025a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2026a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2027a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2028a30f8f8cSSatish Balay 2029a30f8f8cSSatish Balay /* hash table stuff */ 2030a30f8f8cSSatish Balay a->ht = 0; 2031a30f8f8cSSatish Balay a->hd = 0; 2032a30f8f8cSSatish Balay a->ht_size = 0; 2033a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2034a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2035a30f8f8cSSatish Balay a->ht_total_ct = 0; 2036a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2037a30f8f8cSSatish Balay 203882502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 2039b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 2040a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 2041a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 2042a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2043a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2044a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2045a30f8f8cSSatish Balay if (oldmat->colmap) { 2046a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2047a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2048a30f8f8cSSatish Balay #else 204982502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2050b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2051a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2052a30f8f8cSSatish Balay #endif 2053a30f8f8cSSatish Balay } else a->colmap = 0; 2054a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 205582502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2056b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2057a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2058a30f8f8cSSatish Balay } else a->garray = 0; 2059a30f8f8cSSatish Balay 2060a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2061b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2062a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2063a30f8f8cSSatish Balay 2064b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 2065a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2066b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2067a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2068b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2069b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2070a30f8f8cSSatish Balay *newmat = mat; 2071a30f8f8cSSatish Balay PetscFunctionReturn(0); 2072a30f8f8cSSatish Balay } 2073a30f8f8cSSatish Balay 2074a30f8f8cSSatish Balay #include "petscsys.h" 2075a30f8f8cSSatish Balay 2076273d9f13SBarry Smith EXTERN_C_BEGIN 20774a2ae208SSatish Balay #undef __FUNCT__ 20784a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2079b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 2080a30f8f8cSSatish Balay { 2081a30f8f8cSSatish Balay Mat A; 2082a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 208387828ca2SBarry Smith PetscScalar *vals,*buf; 2084a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2085a30f8f8cSSatish Balay MPI_Status status; 2086a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2087a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2088a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2089a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2090a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2091a30f8f8cSSatish Balay 2092a30f8f8cSSatish Balay PetscFunctionBegin; 2093b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2094a30f8f8cSSatish Balay 2095a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2096a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2097a30f8f8cSSatish Balay if (!rank) { 2098b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2099a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2100552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2101a30f8f8cSSatish Balay if (header[3] < 0) { 210229bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2103a30f8f8cSSatish Balay } 2104a30f8f8cSSatish Balay } 2105a30f8f8cSSatish Balay 2106a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2107a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2108a30f8f8cSSatish Balay 210929bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2110a30f8f8cSSatish Balay 2111a30f8f8cSSatish Balay /* 2112a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2113a30f8f8cSSatish Balay divisible by the blocksize 2114a30f8f8cSSatish Balay */ 2115a30f8f8cSSatish Balay Mbs = M/bs; 2116a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2117a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2118a30f8f8cSSatish Balay else Mbs++; 2119a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2120b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2121a30f8f8cSSatish Balay } 2122a30f8f8cSSatish Balay 2123a30f8f8cSSatish Balay /* determine ownership of all rows */ 2124a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2125a30f8f8cSSatish Balay m = mbs*bs; 2126b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2127a30f8f8cSSatish Balay browners = rowners + size + 1; 2128a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2129a30f8f8cSSatish Balay rowners[0] = 0; 2130a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2131a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2132a30f8f8cSSatish Balay rstart = rowners[rank]; 2133a30f8f8cSSatish Balay rend = rowners[rank+1]; 2134a30f8f8cSSatish Balay 2135a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 213682502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2137a30f8f8cSSatish Balay if (!rank) { 2138b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2139a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2140a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 214182502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2142a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2143a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2144a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2145a30f8f8cSSatish Balay } else { 2146a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2147a30f8f8cSSatish Balay } 2148a30f8f8cSSatish Balay 21490222edb1SHong Zhang if (!rank) { /* procs[0] */ 2150a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 215182502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2152a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2153a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2154a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2155a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2156a30f8f8cSSatish Balay } 2157a30f8f8cSSatish Balay } 2158a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2159a30f8f8cSSatish Balay 2160a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2161a30f8f8cSSatish Balay maxnz = 0; 2162a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2163a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2164a30f8f8cSSatish Balay } 216582502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay 2167a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2168a30f8f8cSSatish Balay nz = procsnz[0]; 216982502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2170a30f8f8cSSatish Balay mycols = ibuf; 2171a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2172a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2173a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2174a30f8f8cSSatish Balay 2175a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2176a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2177a30f8f8cSSatish Balay nz = procsnz[i]; 2178a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay } 2181a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2182a30f8f8cSSatish Balay if (size != 1) { 2183a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2184a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2186a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2187a30f8f8cSSatish Balay } 2188a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21890222edb1SHong Zhang } else { /* procs[i], i>0 */ 2190a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2191a30f8f8cSSatish Balay nz = 0; 2192a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2193a30f8f8cSSatish Balay nz += locrowlens[i]; 2194a30f8f8cSSatish Balay } 219582502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2196a30f8f8cSSatish Balay mycols = ibuf; 2197a30f8f8cSSatish Balay /* receive message of column indices*/ 2198a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 220029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2201a30f8f8cSSatish Balay } 2202a30f8f8cSSatish Balay 2203a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 220482502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 220682502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2208a30f8f8cSSatish Balay masked1 = mask + Mbs; 2209a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2210a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2211a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2212a30f8f8cSSatish Balay dcount = 0; 2213a30f8f8cSSatish Balay odcount = 0; 2214a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2215a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2216a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22170222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2218a30f8f8cSSatish Balay if (!mask[tmp]) { 2219a30f8f8cSSatish Balay mask[tmp] = 1; 22200222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22210222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2222a30f8f8cSSatish Balay } 2223a30f8f8cSSatish Balay } 2224a30f8f8cSSatish Balay rowcount++; 2225a30f8f8cSSatish Balay } 2226a30f8f8cSSatish Balay 22270222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22280222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2229a30f8f8cSSatish Balay 2230a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2231a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2232a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2233a30f8f8cSSatish Balay } 2234a30f8f8cSSatish Balay 2235a30f8f8cSSatish Balay /* create our matrix */ 22367e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2237bfe19f1aSHong Zhang CHKERRQ(ierr); 2238a30f8f8cSSatish Balay A = *newmat; 2239273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2240a30f8f8cSSatish Balay 2241a30f8f8cSSatish Balay if (!rank) { 224287828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2243a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2244a30f8f8cSSatish Balay nz = procsnz[0]; 2245a30f8f8cSSatish Balay vals = buf; 2246a30f8f8cSSatish Balay mycols = ibuf; 2247a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2248a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2249a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2250a30f8f8cSSatish Balay 2251a30f8f8cSSatish Balay /* insert into matrix */ 2252a30f8f8cSSatish Balay jj = rstart*bs; 2253a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22547e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2255a30f8f8cSSatish Balay mycols += locrowlens[i]; 2256a30f8f8cSSatish Balay vals += locrowlens[i]; 2257a30f8f8cSSatish Balay jj++; 2258a30f8f8cSSatish Balay } 22597e06b45fSHong Zhang 2260a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2261a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2262a30f8f8cSSatish Balay nz = procsnz[i]; 2263a30f8f8cSSatish Balay vals = buf; 2264a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2266a30f8f8cSSatish Balay } 2267a30f8f8cSSatish Balay /* the last proc */ 2268a30f8f8cSSatish Balay if (size != 1){ 2269a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2270a30f8f8cSSatish Balay vals = buf; 2271a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2273a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2274a30f8f8cSSatish Balay } 2275a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22767e06b45fSHong Zhang 2277a30f8f8cSSatish Balay } else { 2278a30f8f8cSSatish Balay /* receive numeric values */ 227987828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2280a30f8f8cSSatish Balay 2281a30f8f8cSSatish Balay /* receive message of values*/ 2282a30f8f8cSSatish Balay vals = buf; 2283a30f8f8cSSatish Balay mycols = ibuf; 2284a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2285a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 228629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2287a30f8f8cSSatish Balay 2288a30f8f8cSSatish Balay /* insert into matrix */ 2289a30f8f8cSSatish Balay jj = rstart*bs; 2290a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2291a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2292a30f8f8cSSatish Balay mycols += locrowlens[i]; 2293a30f8f8cSSatish Balay vals += locrowlens[i]; 2294a30f8f8cSSatish Balay jj++; 2295a30f8f8cSSatish Balay } 2296a30f8f8cSSatish Balay } 22977e06b45fSHong Zhang 2298a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2299a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2300a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2301a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2302a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2303a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2304a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2305a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2306a30f8f8cSSatish Balay PetscFunctionReturn(0); 2307a30f8f8cSSatish Balay } 2308273d9f13SBarry Smith EXTERN_C_END 2309a30f8f8cSSatish Balay 23104a2ae208SSatish Balay #undef __FUNCT__ 23114a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2312a30f8f8cSSatish Balay /*@ 2313a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2314a30f8f8cSSatish Balay 2315a30f8f8cSSatish Balay Input Parameters: 2316a30f8f8cSSatish Balay . mat - the matrix 2317a30f8f8cSSatish Balay . fact - factor 2318a30f8f8cSSatish Balay 2319a30f8f8cSSatish Balay Collective on Mat 2320a30f8f8cSSatish Balay 2321a30f8f8cSSatish Balay Level: advanced 2322a30f8f8cSSatish Balay 2323a30f8f8cSSatish Balay Notes: 2324a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2325a30f8f8cSSatish Balay 2326a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2327a30f8f8cSSatish Balay 2328a30f8f8cSSatish Balay .seealso: MatSetOption() 2329a30f8f8cSSatish Balay @*/ 2330a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2331a30f8f8cSSatish Balay { 2332a30f8f8cSSatish Balay PetscFunctionBegin; 233329bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 233496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2335a30f8f8cSSatish Balay } 233624d5174aSHong Zhang 23374a2ae208SSatish Balay #undef __FUNCT__ 23384a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 233924d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 234024d5174aSHong Zhang { 234124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2342f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2343ca54ac64SHong Zhang PetscReal atmp; 234487828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2345ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2346154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 234787828ca2SBarry Smith PetscScalar *va; 23488a1c53f2SBarry Smith MatScalar *ba; 2349f4c0e9e4SHong Zhang MPI_Status stat; 235024d5174aSHong Zhang 235124d5174aSHong Zhang PetscFunctionBegin; 2352d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2353f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2354f4c0e9e4SHong Zhang 2355ac355199SBarry Smith ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 2356ac355199SBarry Smith ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 2357f4c0e9e4SHong Zhang 2358f4c0e9e4SHong Zhang bs = a->bs; 2359f4c0e9e4SHong Zhang mbs = a->mbs; 2360f4c0e9e4SHong Zhang Mbs = a->Mbs; 2361f4c0e9e4SHong Zhang ba = b->a; 2362f4c0e9e4SHong Zhang bi = b->i; 2363f4c0e9e4SHong Zhang bj = b->j; 2364ca54ac64SHong Zhang /* 2365f4c0e9e4SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 2366f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2367ca54ac64SHong Zhang */ 2368f4c0e9e4SHong Zhang 2369f4c0e9e4SHong Zhang /* find ownerships */ 2370f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2371f4c0e9e4SHong Zhang /* 237204d41228SHong Zhang if (!rank){ 237304d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2374f4c0e9e4SHong Zhang } 2375f4c0e9e4SHong Zhang */ 2376f4c0e9e4SHong Zhang 2377f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 237882502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2379ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2380f4c0e9e4SHong Zhang 2381f4c0e9e4SHong Zhang /* row_max for B */ 2382b8475685SHong Zhang if (rank != size-1){ 2383f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2384f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2385f4c0e9e4SHong Zhang brow = bs*i; 2386f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2387f4c0e9e4SHong Zhang bcol = bs*(*bj); 2388f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2389ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 239004d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2391ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2392f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2393f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2394ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2395f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2396ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2397f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2398f4c0e9e4SHong Zhang } 2399f4c0e9e4SHong Zhang } 2400f4c0e9e4SHong Zhang bj++; 2401f4c0e9e4SHong Zhang } 2402f4c0e9e4SHong Zhang } 240304d41228SHong Zhang /* 240404d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 240504d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 240604d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 240704d41228SHong Zhang */ 2408f4c0e9e4SHong Zhang 2409f4c0e9e4SHong Zhang /* send values to its owners */ 2410f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2411f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2412ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2413d7d1e502SBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr); 2414ca54ac64SHong Zhang /* 241504d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 2416f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2417ca54ac64SHong Zhang */ 2418ca54ac64SHong Zhang } 2419f4c0e9e4SHong Zhang } 2420f4c0e9e4SHong Zhang 2421f4c0e9e4SHong Zhang /* receive values */ 2422ca54ac64SHong Zhang if (rank){ 2423f4c0e9e4SHong Zhang rvalues = work; 2424ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2425f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 2426d7d1e502SBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr); 2427f4c0e9e4SHong Zhang /* process values */ 2428f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2429ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2430f4c0e9e4SHong Zhang } 2431ca54ac64SHong Zhang /* 243204d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 2433f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2434ca54ac64SHong Zhang */ 2435f4c0e9e4SHong Zhang } 2436ca54ac64SHong Zhang } 2437f4c0e9e4SHong Zhang 2438f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2439ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 244024d5174aSHong Zhang PetscFunctionReturn(0); 244124d5174aSHong Zhang } 24422798e883SHong Zhang 24432798e883SHong Zhang #undef __FUNCT__ 24442798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2445c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 24462798e883SHong Zhang { 24472798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2448ffe4fb16SHong Zhang int ierr,mbs=mat->mbs,bs=mat->bs; 2449ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2450ffe4fb16SHong Zhang Vec bb1; 2451ffe4fb16SHong Zhang 2452ffe4fb16SHong Zhang PetscFunctionBegin; 2453ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2454ffe4fb16SHong Zhang if (bs > 1) 2455ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2456ffe4fb16SHong Zhang 2457ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2458ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2459ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2460ffe4fb16SHong Zhang its--; 2461ffe4fb16SHong Zhang } 2462ffe4fb16SHong Zhang 2463ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2464ffe4fb16SHong Zhang while (its--){ 2465ffe4fb16SHong Zhang 2466ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2467ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2468ffe4fb16SHong Zhang 2469ffe4fb16SHong Zhang /* copy xx into slvec0a */ 2470ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2471ffe4fb16SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2472ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2473ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2474ffe4fb16SHong Zhang 2475ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2476ffe4fb16SHong Zhang 2477ffe4fb16SHong Zhang /* copy bb into slvec1a */ 2478ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2479ffe4fb16SHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2480ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2481ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2482ffe4fb16SHong Zhang 2483ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2484ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2485ffe4fb16SHong Zhang 2486ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2487ffe4fb16SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2488ffe4fb16SHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2489ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2490ffe4fb16SHong Zhang 2491ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2492ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2493ffe4fb16SHong Zhang 2494ffe4fb16SHong Zhang /* local diagonal sweep */ 2495ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2496ffe4fb16SHong Zhang } 2497ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2498ffe4fb16SHong Zhang } else { 2499ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2500ffe4fb16SHong Zhang } 2501ffe4fb16SHong Zhang PetscFunctionReturn(0); 2502ffe4fb16SHong Zhang } 2503ffe4fb16SHong Zhang 2504ffe4fb16SHong Zhang #undef __FUNCT__ 2505ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2506ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2507ffe4fb16SHong Zhang { 2508ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 25092798e883SHong Zhang int ierr; 2510d05c616dSSatish Balay PetscScalar mone=-1.0; 25112798e883SHong Zhang Vec lvec1,bb1; 25122798e883SHong Zhang 25132798e883SHong Zhang PetscFunctionBegin; 251491723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 25152798e883SHong Zhang if (mat->bs > 1) 25162798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25172798e883SHong Zhang 2518c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25192798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2520bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25212798e883SHong Zhang its--; 25222798e883SHong Zhang } 25232798e883SHong Zhang 25242798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25252798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25262798e883SHong Zhang while (its--){ 25272798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25282798e883SHong Zhang 25292798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25302798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25312798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25322798e883SHong Zhang 25332798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25342798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25352798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25362798e883SHong Zhang 25372798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 25382798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 25392798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25402798e883SHong Zhang 25412798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25422798e883SHong Zhang 2543c14dc6b6SHong Zhang /* diagonal sweep */ 2544bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25452798e883SHong Zhang } 25462798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25472798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2548c14dc6b6SHong Zhang } else { 2549c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2550c14dc6b6SHong Zhang } 25512798e883SHong Zhang PetscFunctionReturn(0); 25522798e883SHong Zhang } 25532798e883SHong Zhang 2554