xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 456192e25527e6dfd94efe19f31bdabe85ed0893)
173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h"
5a30f8f8cSSatish Balay #include "mpisbaij.h"
6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
7a30f8f8cSSatish Balay 
8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat);
940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat);
11a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int);
12a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **);
1387828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *);
1487828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode);
1587828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat);
1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec);
22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2587828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
26a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
27a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
28a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
29a30f8f8cSSatish Balay    into the single precision data structures.
30a30f8f8cSSatish Balay */
31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
35a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
36a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
37a30f8f8cSSatish Balay #else
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
43a30f8f8cSSatish Balay #endif
44a30f8f8cSSatish Balay 
45a30f8f8cSSatish Balay EXTERN_C_BEGIN
464a2ae208SSatish Balay #undef __FUNCT__
474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
48a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat)
49a30f8f8cSSatish Balay {
50f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
51a30f8f8cSSatish Balay   int          ierr;
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay   PetscFunctionBegin;
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
56a30f8f8cSSatish Balay   PetscFunctionReturn(0);
57a30f8f8cSSatish Balay }
58a30f8f8cSSatish Balay EXTERN_C_END
59a30f8f8cSSatish Balay 
60a30f8f8cSSatish Balay EXTERN_C_BEGIN
614a2ae208SSatish Balay #undef __FUNCT__
624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
63a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat)
64a30f8f8cSSatish Balay {
65f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
66a30f8f8cSSatish Balay   int          ierr;
67a30f8f8cSSatish Balay 
68a30f8f8cSSatish Balay   PetscFunctionBegin;
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
71a30f8f8cSSatish Balay   PetscFunctionReturn(0);
72a30f8f8cSSatish Balay }
73a30f8f8cSSatish Balay EXTERN_C_END
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay /*
76a30f8f8cSSatish Balay      Local utility routine that creates a mapping from the global column
77a30f8f8cSSatish Balay    number to the local number in the off-diagonal part of the local
78a30f8f8cSSatish Balay    storage of the matrix.  This is done in a non scable way since the
79a30f8f8cSSatish Balay    length of colmap equals the global matrix length.
80a30f8f8cSSatish Balay */
814a2ae208SSatish Balay #undef __FUNCT__
824a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private"
83a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat)
84a30f8f8cSSatish Balay {
85a30f8f8cSSatish Balay   PetscFunctionBegin;
8629bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
8796e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
88a30f8f8cSSatish Balay }
89a30f8f8cSSatish Balay 
90a30f8f8cSSatish Balay #define CHUNKSIZE  10
91a30f8f8cSSatish Balay 
92a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
93a30f8f8cSSatish Balay { \
94a30f8f8cSSatish Balay  \
95a30f8f8cSSatish Balay     brow = row/bs;  \
96a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
97a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
98a30f8f8cSSatish Balay       bcol = col/bs; \
99a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
100a30f8f8cSSatish Balay       low = 0; high = nrow; \
101a30f8f8cSSatish Balay       while (high-low > 3) { \
102a30f8f8cSSatish Balay         t = (low+high)/2; \
103a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
104a30f8f8cSSatish Balay         else              low  = t; \
105a30f8f8cSSatish Balay       } \
106a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
107a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
108a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
109a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
110a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
111a30f8f8cSSatish Balay           else                    *bap  = value;  \
112a30f8f8cSSatish Balay           goto a_noinsert; \
113a30f8f8cSSatish Balay         } \
114a30f8f8cSSatish Balay       } \
115a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
11629bbc08cSBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
117a30f8f8cSSatish Balay       if (nrow >= rmax) { \
118a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
119a30f8f8cSSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
120a30f8f8cSSatish Balay         MatScalar *new_a; \
121a30f8f8cSSatish Balay  \
12229bbc08cSBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
123a30f8f8cSSatish Balay  \
124a30f8f8cSSatish Balay         /* malloc new storage space */ \
125a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \
12682502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
127a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
128a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
129a30f8f8cSSatish Balay  \
130a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
131a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
132a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
133a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
134a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
135a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
136a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
13787828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
138a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
139a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
140a30f8f8cSSatish Balay         /* free up old matrix storage */ \
141a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
142a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
143a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
144a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
145a30f8f8cSSatish Balay         } \
146a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
147a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
148a30f8f8cSSatish Balay  \
149a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
150a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
151b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
152a30f8f8cSSatish Balay         a->s_maxnz += bs2*CHUNKSIZE; \
153a30f8f8cSSatish Balay         a->reallocs++; \
154a30f8f8cSSatish Balay         a->s_nz++; \
155a30f8f8cSSatish Balay       } \
156a30f8f8cSSatish Balay       N = nrow++ - 1;  \
157a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
158a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
159a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
160a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
161a30f8f8cSSatish Balay       } \
162a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
163a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
164a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
165a30f8f8cSSatish Balay       a_noinsert:; \
166a30f8f8cSSatish Balay     ailen[brow] = nrow; \
167a30f8f8cSSatish Balay }
168a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
169a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
170a30f8f8cSSatish Balay { \
171a30f8f8cSSatish Balay     brow = row/bs;  \
172a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
173a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
174a30f8f8cSSatish Balay       bcol = col/bs; \
175a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
176a30f8f8cSSatish Balay       low = 0; high = nrow; \
177a30f8f8cSSatish Balay       while (high-low > 3) { \
178a30f8f8cSSatish Balay         t = (low+high)/2; \
179a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
180a30f8f8cSSatish Balay         else              low  = t; \
181a30f8f8cSSatish Balay       } \
182a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
183a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
184a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
185a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
186a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
187a30f8f8cSSatish Balay           else                    *bap  = value;  \
188a30f8f8cSSatish Balay           goto b_noinsert; \
189a30f8f8cSSatish Balay         } \
190a30f8f8cSSatish Balay       } \
191a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
19229bbc08cSBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
193a30f8f8cSSatish Balay       if (nrow >= rmax) { \
194a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
195a30f8f8cSSatish Balay         int       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
196a30f8f8cSSatish Balay         MatScalar *new_a; \
197a30f8f8cSSatish Balay  \
19829bbc08cSBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
199a30f8f8cSSatish Balay  \
200a30f8f8cSSatish Balay         /* malloc new storage space */ \
201a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \
20282502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
203a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
204a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
205a30f8f8cSSatish Balay  \
206a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
207a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
208a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
209a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
210a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
211a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
212a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
213a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
214a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
215a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
216a30f8f8cSSatish Balay         /* free up old matrix storage */ \
217a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
218a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
219a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
220a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
221a30f8f8cSSatish Balay         } \
222a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
223a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
224a30f8f8cSSatish Balay  \
225a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
226a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
227b0a32e0cSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
228a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
229a30f8f8cSSatish Balay         b->reallocs++; \
230a30f8f8cSSatish Balay         b->nz++; \
231a30f8f8cSSatish Balay       } \
232a30f8f8cSSatish Balay       N = nrow++ - 1;  \
233a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
234a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
235a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
236a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
237a30f8f8cSSatish Balay       } \
238a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
239a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
240a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
241a30f8f8cSSatish Balay       b_noinsert:; \
242a30f8f8cSSatish Balay     bilen[brow] = nrow; \
243a30f8f8cSSatish Balay }
244a30f8f8cSSatish Balay #endif
245a30f8f8cSSatish Balay 
246a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2474a2ae208SSatish Balay #undef __FUNCT__
2484a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
24987828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
250a30f8f8cSSatish Balay {
251a30f8f8cSSatish Balay   Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data;
252a30f8f8cSSatish Balay   int          ierr,i,N = m*n;
253a30f8f8cSSatish Balay   MatScalar    *vsingle;
254a30f8f8cSSatish Balay 
255a30f8f8cSSatish Balay   PetscFunctionBegin;
256a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
257a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
25882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
259a30f8f8cSSatish Balay     b->setvalueslen  = N;
260a30f8f8cSSatish Balay   }
261a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
262a30f8f8cSSatish Balay 
263a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
264a30f8f8cSSatish Balay     vsingle[i] = v[i];
265a30f8f8cSSatish Balay   }
266a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
267a30f8f8cSSatish Balay   PetscFunctionReturn(0);
268a30f8f8cSSatish Balay }
269a30f8f8cSSatish Balay 
2704a2ae208SSatish Balay #undef __FUNCT__
2714a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
27287828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
273a30f8f8cSSatish Balay {
274a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
275a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
276a30f8f8cSSatish Balay   MatScalar   *vsingle;
277a30f8f8cSSatish Balay 
278a30f8f8cSSatish Balay   PetscFunctionBegin;
279a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
280a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
28182502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
282a30f8f8cSSatish Balay     b->setvalueslen  = N;
283a30f8f8cSSatish Balay   }
284a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
285a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
286a30f8f8cSSatish Balay     vsingle[i] = v[i];
287a30f8f8cSSatish Balay   }
288a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
289a30f8f8cSSatish Balay   PetscFunctionReturn(0);
290a30f8f8cSSatish Balay }
291a30f8f8cSSatish Balay 
2924a2ae208SSatish Balay #undef __FUNCT__
2934a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
29487828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
295a30f8f8cSSatish Balay {
296a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
297a30f8f8cSSatish Balay   int         ierr,i,N = m*n;
298a30f8f8cSSatish Balay   MatScalar   *vsingle;
299a30f8f8cSSatish Balay 
300a30f8f8cSSatish Balay   PetscFunctionBegin;
30129bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3024d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
303a30f8f8cSSatish Balay }
304a30f8f8cSSatish Balay 
3054a2ae208SSatish Balay #undef __FUNCT__
3064a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
30787828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
308a30f8f8cSSatish Balay {
309a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
310a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
311a30f8f8cSSatish Balay   MatScalar   *vsingle;
312a30f8f8cSSatish Balay 
313a30f8f8cSSatish Balay   PetscFunctionBegin;
31429bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3154d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
316a30f8f8cSSatish Balay }
317a30f8f8cSSatish Balay #endif
318a30f8f8cSSatish Balay 
319a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
320a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
321a30f8f8cSSatish Balay */
3224a2ae208SSatish Balay #undef __FUNCT__
3234a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
324a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
325a30f8f8cSSatish Balay {
326a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
327a30f8f8cSSatish Balay   MatScalar    value;
328b5df2d14SHong Zhang   PetscTruth   roworiented = baij->roworiented;
329a30f8f8cSSatish Balay   int          ierr,i,j,row,col;
330b5df2d14SHong Zhang   int          rstart_orig=baij->rstart_bs;
331a30f8f8cSSatish Balay   int          rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
332a30f8f8cSSatish Balay   int          cend_orig=baij->cend_bs,bs=baij->bs;
333a30f8f8cSSatish Balay 
334a30f8f8cSSatish Balay   /* Some Variables required in the macro */
335a30f8f8cSSatish Balay   Mat          A = baij->A;
336a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data;
337a30f8f8cSSatish Balay   int          *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
338a30f8f8cSSatish Balay   MatScalar    *aa=a->a;
339a30f8f8cSSatish Balay 
340a30f8f8cSSatish Balay   Mat          B = baij->B;
341a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(B)->data;
342a30f8f8cSSatish Balay   int          *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
343a30f8f8cSSatish Balay   MatScalar    *ba=b->a;
344a30f8f8cSSatish Balay 
345a30f8f8cSSatish Balay   int          *rp,ii,nrow,_i,rmax,N,brow,bcol;
346a30f8f8cSSatish Balay   int          low,high,t,ridx,cidx,bs2=a->bs2;
347a30f8f8cSSatish Balay   MatScalar    *ap,*bap;
348a30f8f8cSSatish Balay 
349a30f8f8cSSatish Balay   /* for stash */
350f65c83cfSHong Zhang   int          n_loc, *in_loc=0;
351f65c83cfSHong Zhang   MatScalar    *v_loc=0;
352a30f8f8cSSatish Balay 
353a30f8f8cSSatish Balay   PetscFunctionBegin;
354a30f8f8cSSatish Balay 
355a30f8f8cSSatish Balay   if(!baij->donotstash){
35682502324SSatish Balay     ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr);
35782502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
358a30f8f8cSSatish Balay   }
359a30f8f8cSSatish Balay 
360a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
361a30f8f8cSSatish Balay     if (im[i] < 0) continue;
362a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
363b5df2d14SHong Zhang     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
364a30f8f8cSSatish Balay #endif
365a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
366a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
367a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
368f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
369a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
370a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
371a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
372a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
373a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
374a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
375a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
376a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
377a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
378b5df2d14SHong Zhang         else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");}
379a30f8f8cSSatish Balay #endif
380a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
381a30f8f8cSSatish Balay           if (mat->was_assembled) {
382a30f8f8cSSatish Balay             if (!baij->colmap) {
383a30f8f8cSSatish Balay               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
384a30f8f8cSSatish Balay             }
385a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
386a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
38771730473SSatish Balay             col  = col - 1;
388a30f8f8cSSatish Balay #else
38971730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
390a30f8f8cSSatish Balay #endif
391a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
392a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
393a30f8f8cSSatish Balay               col =  in[j];
394a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
395a30f8f8cSSatish Balay               B = baij->B;
396a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
397a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
398a30f8f8cSSatish Balay               ba=b->a;
39971730473SSatish Balay             } else col += in[j]%bs;
400a30f8f8cSSatish Balay           } else col = in[j];
401a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
402a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
403a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
404a30f8f8cSSatish Balay         }
405a30f8f8cSSatish Balay       }
406a30f8f8cSSatish Balay     } else {  /* off processor entry */
407a30f8f8cSSatish Balay       if (!baij->donotstash) {
408a30f8f8cSSatish Balay         n_loc = 0;
409a30f8f8cSSatish Balay         for (j=0; j<n; j++){
410f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
411a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
412a30f8f8cSSatish Balay           if (roworiented) {
413a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
414a30f8f8cSSatish Balay           } else {
415a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
416a30f8f8cSSatish Balay           }
417a30f8f8cSSatish Balay           n_loc++;
418a30f8f8cSSatish Balay         }
419a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       }
421a30f8f8cSSatish Balay     }
422a30f8f8cSSatish Balay   }
423a30f8f8cSSatish Balay 
424a30f8f8cSSatish Balay   if(!baij->donotstash){
425a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
426a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
427a30f8f8cSSatish Balay   }
428a30f8f8cSSatish Balay   PetscFunctionReturn(0);
429a30f8f8cSSatish Balay }
430a30f8f8cSSatish Balay 
4314a2ae208SSatish Balay #undef __FUNCT__
4324a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
433a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
434a30f8f8cSSatish Balay {
435a30f8f8cSSatish Balay   PetscFunctionBegin;
43629bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
43796e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
438a30f8f8cSSatish Balay }
439a30f8f8cSSatish Balay 
440a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
441a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
442a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
443a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
4444a2ae208SSatish Balay #undef __FUNCT__
4454a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
446a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
447a30f8f8cSSatish Balay {
448a30f8f8cSSatish Balay   PetscFunctionBegin;
44929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
45096e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
451a30f8f8cSSatish Balay }
452a30f8f8cSSatish Balay 
4534a2ae208SSatish Balay #undef __FUNCT__
4544a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
455a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
456a30f8f8cSSatish Balay {
457a30f8f8cSSatish Balay   PetscFunctionBegin;
45829bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
45996e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
460a30f8f8cSSatish Balay }
461a30f8f8cSSatish Balay 
4624a2ae208SSatish Balay #undef __FUNCT__
4634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
46487828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v)
465a30f8f8cSSatish Balay {
466f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
467a30f8f8cSSatish Balay   int          bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
468a30f8f8cSSatish Balay   int          bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
469a30f8f8cSSatish Balay 
470a30f8f8cSSatish Balay   PetscFunctionBegin;
471a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
47229bbc08cSBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
473b5df2d14SHong Zhang     if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
474a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
475a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
476a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
47729bbc08cSBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column");
478b5df2d14SHong Zhang         if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
479a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
480a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
481c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
482a30f8f8cSSatish Balay         } else {
483a30f8f8cSSatish Balay           if (!baij->colmap) {
484a30f8f8cSSatish Balay             ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
485a30f8f8cSSatish Balay           }
486a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
487a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
488a30f8f8cSSatish Balay           data --;
489a30f8f8cSSatish Balay #else
490a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
491a30f8f8cSSatish Balay #endif
492a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
493a30f8f8cSSatish Balay           else {
494a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
495c8407628SSatish Balay             ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
496a30f8f8cSSatish Balay           }
497a30f8f8cSSatish Balay         }
498a30f8f8cSSatish Balay       }
499a30f8f8cSSatish Balay     } else {
50029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
501a30f8f8cSSatish Balay     }
502a30f8f8cSSatish Balay   }
503a30f8f8cSSatish Balay  PetscFunctionReturn(0);
504a30f8f8cSSatish Balay }
505a30f8f8cSSatish Balay 
5064a2ae208SSatish Balay #undef __FUNCT__
5074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
508a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
509a30f8f8cSSatish Balay {
510a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
511bc0ba53dSHong Zhang   /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */
512bc0ba53dSHong Zhang   /* Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ*)baij->B->data; */
513a30f8f8cSSatish Balay   int        ierr;
514a30f8f8cSSatish Balay   PetscReal  sum[2],*lnorm2;
515a30f8f8cSSatish Balay 
516a30f8f8cSSatish Balay   PetscFunctionBegin;
517a30f8f8cSSatish Balay   if (baij->size == 1) {
518a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
519a30f8f8cSSatish Balay   } else {
520a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
521f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
522a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
523a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
524a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
525a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
526a30f8f8cSSatish Balay       /*
527a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr);
528a30f8f8cSSatish Balay       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]);
529a30f8f8cSSatish Balay       */
530d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
531a30f8f8cSSatish Balay       /*
532a30f8f8cSSatish Balay       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]);
533a30f8f8cSSatish Balay       PetscSynchronizedFlush(PETSC_COMM_WORLD); */
534a30f8f8cSSatish Balay 
535a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
536a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
537a30f8f8cSSatish Balay     } else {
53829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
539a30f8f8cSSatish Balay     }
540a30f8f8cSSatish Balay   }
541a30f8f8cSSatish Balay   PetscFunctionReturn(0);
542a30f8f8cSSatish Balay }
543a30f8f8cSSatish Balay 
544a30f8f8cSSatish Balay /*
545a30f8f8cSSatish Balay   Creates the hash table, and sets the table
546a30f8f8cSSatish Balay   This table is created only once.
547a30f8f8cSSatish Balay   If new entried need to be added to the matrix
548a30f8f8cSSatish Balay   then the hash table has to be destroyed and
549a30f8f8cSSatish Balay   recreated.
550a30f8f8cSSatish Balay */
5514a2ae208SSatish Balay #undef __FUNCT__
5524a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
553a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
554a30f8f8cSSatish Balay {
555a30f8f8cSSatish Balay   PetscFunctionBegin;
55629bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
55796e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
558a30f8f8cSSatish Balay }
559a30f8f8cSSatish Balay 
5604a2ae208SSatish Balay #undef __FUNCT__
5614a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
562a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
563a30f8f8cSSatish Balay {
564a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
565a30f8f8cSSatish Balay   int         ierr,nstash,reallocs;
566a30f8f8cSSatish Balay   InsertMode  addv;
567a30f8f8cSSatish Balay 
568a30f8f8cSSatish Balay   PetscFunctionBegin;
569a30f8f8cSSatish Balay   if (baij->donotstash) {
570a30f8f8cSSatish Balay     PetscFunctionReturn(0);
571a30f8f8cSSatish Balay   }
572a30f8f8cSSatish Balay 
573a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
574a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
575a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
57629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
577a30f8f8cSSatish Balay   }
578a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
579a30f8f8cSSatish Balay 
580a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
581a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
582a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
583b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs);
584a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
585b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
586a30f8f8cSSatish Balay   PetscFunctionReturn(0);
587a30f8f8cSSatish Balay }
588a30f8f8cSSatish Balay 
5894a2ae208SSatish Balay #undef __FUNCT__
5904a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
591a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
592a30f8f8cSSatish Balay {
593a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data;
594a30f8f8cSSatish Balay   Mat_SeqSBAIJ  *a=(Mat_SeqSBAIJ*)baij->A->data;
595a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b=(Mat_SeqBAIJ*)baij->B->data;
596a30f8f8cSSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
597a30f8f8cSSatish Balay   int         *row,*col,other_disassembled;
598a30f8f8cSSatish Balay   PetscTruth  r1,r2,r3;
599a30f8f8cSSatish Balay   MatScalar   *val;
600a30f8f8cSSatish Balay   InsertMode  addv = mat->insertmode;
6015222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES)
6025222a1afSHong Zhang   PetscTruth  flag;
6035222a1afSHong Zhang #endif
604a30f8f8cSSatish Balay 
605a30f8f8cSSatish Balay   PetscFunctionBegin;
606a30f8f8cSSatish Balay 
607a30f8f8cSSatish Balay   if (!baij->donotstash) {
608a30f8f8cSSatish Balay     while (1) {
609a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
610a30f8f8cSSatish Balay       /*
611a30f8f8cSSatish Balay       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg);
612a30f8f8cSSatish Balay       PetscSynchronizedFlush(PETSC_COMM_WORLD);
613a30f8f8cSSatish Balay       */
614a30f8f8cSSatish Balay       if (!flg) break;
615a30f8f8cSSatish Balay 
616a30f8f8cSSatish Balay       for (i=0; i<n;) {
617a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
618a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
619a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
620a30f8f8cSSatish Balay         else       ncols = n-i;
621a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
622a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
623a30f8f8cSSatish Balay         i = j;
624a30f8f8cSSatish Balay       }
625a30f8f8cSSatish Balay     }
626a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
627a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
628a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
629a30f8f8cSSatish Balay        restore the original flags */
630a30f8f8cSSatish Balay     r1 = baij->roworiented;
631a30f8f8cSSatish Balay     r2 = a->roworiented;
632a30f8f8cSSatish Balay     r3 = b->roworiented;
633a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
634a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
635a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
636a30f8f8cSSatish Balay     while (1) {
637a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
638a30f8f8cSSatish Balay       if (!flg) break;
639a30f8f8cSSatish Balay 
640a30f8f8cSSatish Balay       for (i=0; i<n;) {
641a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
642a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
643a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
644a30f8f8cSSatish Balay         else       ncols = n-i;
645a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
646a30f8f8cSSatish Balay         i = j;
647a30f8f8cSSatish Balay       }
648a30f8f8cSSatish Balay     }
649a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
650a30f8f8cSSatish Balay     baij->roworiented = r1;
651a30f8f8cSSatish Balay     a->roworiented    = r2;
652a30f8f8cSSatish Balay     b->roworiented    = r3;
653a30f8f8cSSatish Balay   }
654a30f8f8cSSatish Balay 
655a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
656a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
659a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
660a30f8f8cSSatish Balay   /*
661a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
662a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
663a30f8f8cSSatish Balay   */
664a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
665a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
667c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     }
669a30f8f8cSSatish Balay   }
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
67240781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
673a30f8f8cSSatish Balay   }
674a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
675a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
676a30f8f8cSSatish Balay 
677a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
678a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
679f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
680a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
681a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
682a30f8f8cSSatish Balay   }
683a30f8f8cSSatish Balay #endif
684a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
685c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
686a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
687a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
688a30f8f8cSSatish Balay   }
689a30f8f8cSSatish Balay 
690a30f8f8cSSatish Balay   if (baij->rowvalues) {
691a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
692a30f8f8cSSatish Balay     baij->rowvalues = 0;
693a30f8f8cSSatish Balay   }
6945222a1afSHong Zhang 
6955222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES)
696e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(mat,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
6975222a1afSHong Zhang   if (flag) { ierr = MatUseSpooles_MPISBAIJ(mat);CHKERRQ(ierr); }
6985222a1afSHong Zhang #endif
699a30f8f8cSSatish Balay   PetscFunctionReturn(0);
700a30f8f8cSSatish Balay }
701a30f8f8cSSatish Balay 
7024a2ae208SSatish Balay #undef __FUNCT__
7034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
704b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
705a30f8f8cSSatish Balay {
706a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
707fb9695e5SSatish Balay   int               ierr,bs = baij->bs,size = baij->size,rank = baij->rank;
708a30f8f8cSSatish Balay   PetscTruth        isascii,isdraw;
709b0a32e0cSBarry Smith   PetscViewer       sviewer;
710f3ef73ceSBarry Smith   PetscViewerFormat format;
711a30f8f8cSSatish Balay 
712a30f8f8cSSatish Balay   PetscFunctionBegin;
713b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
714fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
715a30f8f8cSSatish Balay   if (isascii) {
716b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
717*456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
718a30f8f8cSSatish Balay       MatInfo info;
719a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
720a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
721b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
722b5df2d14SHong Zhang               rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
723a30f8f8cSSatish Balay               baij->bs,(int)info.memory);CHKERRQ(ierr);
724a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
725b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
726a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
727b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
728b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
729a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
730a30f8f8cSSatish Balay       PetscFunctionReturn(0);
731fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
732b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
733a30f8f8cSSatish Balay       PetscFunctionReturn(0);
734a30f8f8cSSatish Balay     }
735a30f8f8cSSatish Balay   }
736a30f8f8cSSatish Balay 
737a30f8f8cSSatish Balay   if (isdraw) {
738b0a32e0cSBarry Smith     PetscDraw       draw;
739a30f8f8cSSatish Balay     PetscTruth isnull;
740b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
741b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
742a30f8f8cSSatish Balay   }
743a30f8f8cSSatish Balay 
744a30f8f8cSSatish Balay   if (size == 1) {
745e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
746a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
747a30f8f8cSSatish Balay   } else {
748a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
749a30f8f8cSSatish Balay     Mat         A;
75065d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
75165d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
752b5df2d14SHong Zhang     int         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
753a30f8f8cSSatish Balay     MatScalar   *a;
754a30f8f8cSSatish Balay 
755a30f8f8cSSatish Balay     if (!rank) {
756bc0ba53dSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
757a30f8f8cSSatish Balay     } else {
758f65c83cfSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
759a30f8f8cSSatish Balay     }
760b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
761a30f8f8cSSatish Balay 
762a30f8f8cSSatish Balay     /* copy over the A part */
76365d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
764a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
76582502324SSatish Balay     ierr  = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
766a30f8f8cSSatish Balay 
767a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
768a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
769a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
770a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
771a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
772a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
773a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
774a30f8f8cSSatish Balay           col++; a += bs;
775a30f8f8cSSatish Balay         }
776a30f8f8cSSatish Balay       }
777a30f8f8cSSatish Balay     }
778a30f8f8cSSatish Balay     /* copy over the B part */
77965d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
78065d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
781a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
782a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
783a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
784a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
785a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
786a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
787a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
788a30f8f8cSSatish Balay           col++; a += bs;
789a30f8f8cSSatish Balay         }
790a30f8f8cSSatish Balay       }
791a30f8f8cSSatish Balay     }
792a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
793a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
794a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
795a30f8f8cSSatish Balay     /*
796a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
797b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
798a30f8f8cSSatish Balay     */
799b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
80065d70643SHong Zhang     if (!rank) {
801e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
802a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
803a30f8f8cSSatish Balay     }
804b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
805a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
806a30f8f8cSSatish Balay   }
807a30f8f8cSSatish Balay   PetscFunctionReturn(0);
808a30f8f8cSSatish Balay }
809a30f8f8cSSatish Balay 
8104a2ae208SSatish Balay #undef __FUNCT__
8114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
812b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
813a30f8f8cSSatish Balay {
814a30f8f8cSSatish Balay   int        ierr;
815a30f8f8cSSatish Balay   PetscTruth isascii,isdraw,issocket,isbinary;
816a30f8f8cSSatish Balay 
817a30f8f8cSSatish Balay   PetscFunctionBegin;
818b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
819fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
820b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
821fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
822a30f8f8cSSatish Balay   if (isascii || isdraw || issocket || isbinary) {
823a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
824a30f8f8cSSatish Balay   } else {
82529bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
826a30f8f8cSSatish Balay   }
827a30f8f8cSSatish Balay   PetscFunctionReturn(0);
828a30f8f8cSSatish Balay }
829a30f8f8cSSatish Balay 
8304a2ae208SSatish Balay #undef __FUNCT__
8314a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
832a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat)
833a30f8f8cSSatish Balay {
834a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
835a30f8f8cSSatish Balay   int         ierr;
836a30f8f8cSSatish Balay 
837a30f8f8cSSatish Balay   PetscFunctionBegin;
838a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
839b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N);
840a30f8f8cSSatish Balay #endif
841a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
842a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
843a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
844a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
845a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
846a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
847a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
848a30f8f8cSSatish Balay #else
849a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
850a30f8f8cSSatish Balay #endif
851a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
852a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
853a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
85440781036SHong Zhang   if (baij->slvec0) {
85540781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
85640781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
85740781036SHong Zhang   }
85840781036SHong Zhang   if (baij->slvec1) {
85940781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
86040781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
86140781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
86240781036SHong Zhang   }
86340781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
864a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
865a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
866a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
867a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
868a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
869a30f8f8cSSatish Balay #endif
870a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
871a30f8f8cSSatish Balay   PetscFunctionReturn(0);
872a30f8f8cSSatish Balay }
873a30f8f8cSSatish Balay 
8744a2ae208SSatish Balay #undef __FUNCT__
875a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
876a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
877a9d4b620SHong Zhang {
878a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
8794024bf32SHong Zhang   int         ierr,nt,mbs=a->mbs,bs=a->bs;
880a9d4b620SHong Zhang   PetscScalar *x,*from,zero=0.0;
881a9d4b620SHong Zhang 
882a9d4b620SHong Zhang   PetscFunctionBegin;
883a9d4b620SHong Zhang   /*
884a9d4b620SHong Zhang   PetscSynchronizedPrintf(PETSC_COMM_WORLD," _1comm is called ...\n");
885a9d4b620SHong Zhang   PetscSynchronizedFlush(PETSC_COMM_WORLD);
886a9d4b620SHong Zhang   */
887a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
888a9d4b620SHong Zhang   if (nt != A->n) {
889a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
890a9d4b620SHong Zhang   }
891a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
892a9d4b620SHong Zhang   if (nt != A->m) {
893a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
894a9d4b620SHong Zhang   }
895a9d4b620SHong Zhang 
896a9d4b620SHong Zhang   /* diagonal part */
897a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
898a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
899a9d4b620SHong Zhang 
900a9d4b620SHong Zhang   /* subdiagonal part */
901a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
902a9d4b620SHong Zhang 
903a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
904a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
905a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
906a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
907a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
908a9d4b620SHong Zhang 
909a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
910a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
911a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
912a9d4b620SHong Zhang 
913a9d4b620SHong Zhang   /* supperdiagonal part */
914a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
915a9d4b620SHong Zhang 
916a9d4b620SHong Zhang   PetscFunctionReturn(0);
917a9d4b620SHong Zhang }
918a9d4b620SHong Zhang 
919a9d4b620SHong Zhang #undef __FUNCT__
92040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
92140781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
922a30f8f8cSSatish Balay {
923a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
924a30f8f8cSSatish Balay   int         ierr,nt;
925a30f8f8cSSatish Balay 
926a30f8f8cSSatish Balay   PetscFunctionBegin;
927a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
928b5df2d14SHong Zhang   if (nt != A->n) {
92929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
930a30f8f8cSSatish Balay   }
931a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
932b5df2d14SHong Zhang   if (nt != A->m) {
93329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
934a30f8f8cSSatish Balay   }
93565d70643SHong Zhang 
936b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
937b941877fSHong Zhang   /* do diagonal part */
938b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
939b941877fSHong Zhang   /* do supperdiagonal part */
940b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
941b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
942b941877fSHong Zhang   /* do subdiagonal part */
943b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
944b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
945b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
94665d70643SHong Zhang 
947a30f8f8cSSatish Balay   PetscFunctionReturn(0);
948a30f8f8cSSatish Balay }
949a30f8f8cSSatish Balay 
9504a2ae208SSatish Balay #undef __FUNCT__
9514a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
952a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
953a30f8f8cSSatish Balay {
954de8b6608SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
955a9d4b620SHong Zhang   int          ierr,mbs=a->mbs,bs=a->bs;
956a9d4b620SHong Zhang   PetscScalar  *x,*from,zero=0.0;
957a9d4b620SHong Zhang 
958a9d4b620SHong Zhang   PetscFunctionBegin;
959a9d4b620SHong Zhang   /*
960a9d4b620SHong Zhang   PetscSynchronizedPrintf(PETSC_COMM_WORLD," MatMultAdd is called ...\n");
961a9d4b620SHong Zhang   PetscSynchronizedFlush(PETSC_COMM_WORLD);
962a9d4b620SHong Zhang   */
963a9d4b620SHong Zhang   /* diagonal part */
964a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
965a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
966a9d4b620SHong Zhang 
967a9d4b620SHong Zhang   /* subdiagonal part */
968a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
969a9d4b620SHong Zhang 
970a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
971a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
972a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
973a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
974a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
975a9d4b620SHong Zhang 
976a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
977a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
978a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
979a9d4b620SHong Zhang 
980a9d4b620SHong Zhang   /* supperdiagonal part */
981a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
982a9d4b620SHong Zhang 
983a9d4b620SHong Zhang   PetscFunctionReturn(0);
984a9d4b620SHong Zhang }
985a9d4b620SHong Zhang 
986a9d4b620SHong Zhang #undef __FUNCT__
987a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
988a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
989a9d4b620SHong Zhang {
990a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
991aa482183SHong Zhang   int        ierr;
992a30f8f8cSSatish Balay 
993a30f8f8cSSatish Balay   PetscFunctionBegin;
994b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
995b941877fSHong Zhang   /* do diagonal part */
996b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
997b941877fSHong Zhang   /* do supperdiagonal part */
998b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
999de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1000de8b6608SHong Zhang 
1001b941877fSHong Zhang   /* do subdiagonal part */
1002a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1003a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1004a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1005aa482183SHong Zhang 
1006a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1007a30f8f8cSSatish Balay }
1008a30f8f8cSSatish Balay 
10094a2ae208SSatish Balay #undef __FUNCT__
10104a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1011a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1012a30f8f8cSSatish Balay {
1013a30f8f8cSSatish Balay   PetscFunctionBegin;
101429bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMult().");
101596e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1016a30f8f8cSSatish Balay }
1017a30f8f8cSSatish Balay 
10184a2ae208SSatish Balay #undef __FUNCT__
10194a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1020a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1021a30f8f8cSSatish Balay {
1022a30f8f8cSSatish Balay   PetscFunctionBegin;
102329bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMultAdd().");
102496e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1025a30f8f8cSSatish Balay }
1026a30f8f8cSSatish Balay 
1027a30f8f8cSSatish Balay /*
1028a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1029a30f8f8cSSatish Balay    diagonal block
1030a30f8f8cSSatish Balay */
10314a2ae208SSatish Balay #undef __FUNCT__
10324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1033a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1034a30f8f8cSSatish Balay {
1035a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1036a30f8f8cSSatish Balay   int         ierr;
1037a30f8f8cSSatish Balay 
1038a30f8f8cSSatish Balay   PetscFunctionBegin;
103929bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1040a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1041a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1042a30f8f8cSSatish Balay }
1043a30f8f8cSSatish Balay 
10444a2ae208SSatish Balay #undef __FUNCT__
10454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
104687828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A)
1047a30f8f8cSSatish Balay {
1048a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1049a30f8f8cSSatish Balay   int         ierr;
1050a30f8f8cSSatish Balay 
1051a30f8f8cSSatish Balay   PetscFunctionBegin;
1052a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1053a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1054a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1055a30f8f8cSSatish Balay }
1056a30f8f8cSSatish Balay 
10574a2ae208SSatish Balay #undef __FUNCT__
10584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
105987828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
1060a30f8f8cSSatish Balay {
1061a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
106287828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1063a30f8f8cSSatish Balay   int            bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB;
1064a30f8f8cSSatish Balay   int            nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1065a30f8f8cSSatish Balay   int            *cmap,*idx_p,cstart = mat->cstart;
1066a30f8f8cSSatish Balay 
1067a30f8f8cSSatish Balay   PetscFunctionBegin;
106829bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1069a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1070a30f8f8cSSatish Balay 
1071a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1072a30f8f8cSSatish Balay     /*
1073a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1074a30f8f8cSSatish Balay     */
1075a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1076a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1077a30f8f8cSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1078a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1079a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1080a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1081a30f8f8cSSatish Balay     }
108287828ca2SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1083a30f8f8cSSatish Balay     mat->rowindices = (int*)(mat->rowvalues + max*bs2);
1084a30f8f8cSSatish Balay   }
1085a30f8f8cSSatish Balay 
108629bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1087a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1088a30f8f8cSSatish Balay 
1089a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1090a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1091a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1092a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1093a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1094a30f8f8cSSatish Balay   nztot = nzA + nzB;
1095a30f8f8cSSatish Balay 
1096a30f8f8cSSatish Balay   cmap  = mat->garray;
1097a30f8f8cSSatish Balay   if (v  || idx) {
1098a30f8f8cSSatish Balay     if (nztot) {
1099a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1100a30f8f8cSSatish Balay       int imark = -1;
1101a30f8f8cSSatish Balay       if (v) {
1102a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1103a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1104a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1105a30f8f8cSSatish Balay           else break;
1106a30f8f8cSSatish Balay         }
1107a30f8f8cSSatish Balay         imark = i;
1108a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1109a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1110a30f8f8cSSatish Balay       }
1111a30f8f8cSSatish Balay       if (idx) {
1112a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1113a30f8f8cSSatish Balay         if (imark > -1) {
1114a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1115a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1116a30f8f8cSSatish Balay           }
1117a30f8f8cSSatish Balay         } else {
1118a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1119a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1120a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1121a30f8f8cSSatish Balay             else break;
1122a30f8f8cSSatish Balay           }
1123a30f8f8cSSatish Balay           imark = i;
1124a30f8f8cSSatish Balay         }
1125a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1126a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1127a30f8f8cSSatish Balay       }
1128a30f8f8cSSatish Balay     } else {
1129a30f8f8cSSatish Balay       if (idx) *idx = 0;
1130a30f8f8cSSatish Balay       if (v)   *v   = 0;
1131a30f8f8cSSatish Balay     }
1132a30f8f8cSSatish Balay   }
1133a30f8f8cSSatish Balay   *nz = nztot;
1134a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1135a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1136a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1137a30f8f8cSSatish Balay }
1138a30f8f8cSSatish Balay 
11394a2ae208SSatish Balay #undef __FUNCT__
11404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
114187828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
1142a30f8f8cSSatish Balay {
1143a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1144a30f8f8cSSatish Balay 
1145a30f8f8cSSatish Balay   PetscFunctionBegin;
1146a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
114729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1148a30f8f8cSSatish Balay   }
1149a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1150a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1151a30f8f8cSSatish Balay }
1152a30f8f8cSSatish Balay 
11534a2ae208SSatish Balay #undef __FUNCT__
11544a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ"
1155a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs)
1156a30f8f8cSSatish Balay {
1157a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1158a30f8f8cSSatish Balay 
1159a30f8f8cSSatish Balay   PetscFunctionBegin;
1160a30f8f8cSSatish Balay   *bs = baij->bs;
1161a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1162a30f8f8cSSatish Balay }
1163a30f8f8cSSatish Balay 
11644a2ae208SSatish Balay #undef __FUNCT__
11654a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1166a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A)
1167a30f8f8cSSatish Balay {
1168a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data;
1169a30f8f8cSSatish Balay   int         ierr;
1170a30f8f8cSSatish Balay 
1171a30f8f8cSSatish Balay   PetscFunctionBegin;
1172a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1173a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1174a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1175a30f8f8cSSatish Balay }
1176a30f8f8cSSatish Balay 
11774a2ae208SSatish Balay #undef __FUNCT__
11784a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1179a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1180a30f8f8cSSatish Balay {
1181a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data;
1182a30f8f8cSSatish Balay   Mat         A = a->A,B = a->B;
1183a30f8f8cSSatish Balay   int         ierr;
1184a30f8f8cSSatish Balay   PetscReal   isend[5],irecv[5];
1185a30f8f8cSSatish Balay 
1186a30f8f8cSSatish Balay   PetscFunctionBegin;
1187f6275e2eSBarry Smith   info->block_size     = (PetscReal)a->bs;
1188a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1189a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1190a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1191a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1192a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1193a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1194a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1195a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1196a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1197a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1198a30f8f8cSSatish Balay     info->memory       = isend[3];
1199a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1200a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1201d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1202a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1203a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1204a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1205a30f8f8cSSatish Balay     info->memory       = irecv[3];
1206a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1207a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1208d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1209a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1210a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1211a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1212a30f8f8cSSatish Balay     info->memory       = irecv[3];
1213a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1214a30f8f8cSSatish Balay   } else {
121529bbc08cSBarry Smith     SETERRQ1(1,"Unknown MatInfoType argument %d",flag);
1216a30f8f8cSSatish Balay   }
1217f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1218f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1219f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1220f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1221a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1222a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1223a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1224a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1225a30f8f8cSSatish Balay }
1226a30f8f8cSSatish Balay 
12274a2ae208SSatish Balay #undef __FUNCT__
12284a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1229a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op)
1230a30f8f8cSSatish Balay {
1231a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1232a30f8f8cSSatish Balay   int         ierr;
1233a30f8f8cSSatish Balay 
1234a30f8f8cSSatish Balay   PetscFunctionBegin;
1235e98b92d7SKris Buschelman   switch (op) {
1236e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1237e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1238e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1239e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1240e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1241e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1242e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1243a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1244a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1245e98b92d7SKris Buschelman     break;
1246e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1247a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1248a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1249a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1250e98b92d7SKris Buschelman     break;
1251e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1252e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1253e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1254d03495bdSKris Buschelman   case MAT_USE_SINGLE_PRECISION_SOLVES:
1255b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1256e98b92d7SKris Buschelman     break;
1257e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1258a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1259a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1260a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1261e98b92d7SKris Buschelman     break;
1262e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1263a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1264e98b92d7SKris Buschelman     break;
1265e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
126629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1267e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1268a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1269e98b92d7SKris Buschelman     break;
1270e98b92d7SKris Buschelman   default:
127129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1272a30f8f8cSSatish Balay   }
1273a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1274a30f8f8cSSatish Balay }
1275a30f8f8cSSatish Balay 
12764a2ae208SSatish Balay #undef __FUNCT__
12778115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
12788115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B)
1279a30f8f8cSSatish Balay {
12808115998fSBarry Smith   int ierr;
1281a30f8f8cSSatish Balay   PetscFunctionBegin;
1282999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
12838115998fSBarry Smith   PetscFunctionReturn(0);
1284a30f8f8cSSatish Balay }
1285a30f8f8cSSatish Balay 
12864a2ae208SSatish Balay #undef __FUNCT__
12874a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1288a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1289a30f8f8cSSatish Balay {
1290a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1291a30f8f8cSSatish Balay   Mat         a = baij->A,b = baij->B;
1292a30f8f8cSSatish Balay   int         ierr,s1,s2,s3;
1293a30f8f8cSSatish Balay 
1294a30f8f8cSSatish Balay   PetscFunctionBegin;
1295a30f8f8cSSatish Balay   if (ll != rr) {
129629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1297a30f8f8cSSatish Balay   }
1298a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1299a30f8f8cSSatish Balay   if (rr) {
1300a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
130129bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1302a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1303a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1304a30f8f8cSSatish Balay     /*} if (ll) { */
1305a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
130629bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1307a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1308a30f8f8cSSatish Balay     /* } */
1309a30f8f8cSSatish Balay   /* scale  the diagonal block */
1310a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1311a30f8f8cSSatish Balay 
1312a30f8f8cSSatish Balay   /* if (rr) { */
1313a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1314a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1315a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1316a30f8f8cSSatish Balay   }
1317a30f8f8cSSatish Balay 
1318a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1319a30f8f8cSSatish Balay }
1320a30f8f8cSSatish Balay 
13214a2ae208SSatish Balay #undef __FUNCT__
13224a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
132387828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag)
1324a30f8f8cSSatish Balay {
1325a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1326a30f8f8cSSatish Balay   int            i,ierr,N,*rows,*owners = l->rowners,size = l->size;
132735d8aa7fSBarry Smith   int            *procs,*nprocs,j,idx,nsends,*work,row;
1328a30f8f8cSSatish Balay   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
1329a30f8f8cSSatish Balay   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
1330a30f8f8cSSatish Balay   int            *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs;
1331a30f8f8cSSatish Balay   MPI_Comm       comm = A->comm;
1332a30f8f8cSSatish Balay   MPI_Request    *send_waits,*recv_waits;
1333a30f8f8cSSatish Balay   MPI_Status     recv_status,*send_status;
1334a30f8f8cSSatish Balay   IS             istmp;
133535d8aa7fSBarry Smith   PetscTruth     found;
1336a30f8f8cSSatish Balay 
1337a30f8f8cSSatish Balay   PetscFunctionBegin;
1338a30f8f8cSSatish Balay   ierr = ISGetSize(is,&N);CHKERRQ(ierr);
1339a30f8f8cSSatish Balay   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
1340a30f8f8cSSatish Balay 
1341a30f8f8cSSatish Balay   /*  first count number of contributors to each processor */
134282502324SSatish Balay   ierr  = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr);
1343a30f8f8cSSatish Balay   ierr  = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr);
1344a30f8f8cSSatish Balay   procs = nprocs + size;
1345b0a32e0cSBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/
1346a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
1347a30f8f8cSSatish Balay     idx   = rows[i];
134835d8aa7fSBarry Smith     found = PETSC_FALSE;
1349a30f8f8cSSatish Balay     for (j=0; j<size; j++) {
1350a30f8f8cSSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
135135d8aa7fSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break;
1352a30f8f8cSSatish Balay       }
1353a30f8f8cSSatish Balay     }
135429bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
1355a30f8f8cSSatish Balay   }
1356a30f8f8cSSatish Balay   nsends = 0;  for (i=0; i<size; i++) { nsends += procs[i];}
1357a30f8f8cSSatish Balay 
1358a30f8f8cSSatish Balay   /* inform other processors of number of messages and max length*/
135982502324SSatish Balay   ierr   = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr);
1360a30f8f8cSSatish Balay   ierr   = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr);
1361a30f8f8cSSatish Balay   nmax   = work[rank];
1362a30f8f8cSSatish Balay   nrecvs = work[size+rank];
1363a30f8f8cSSatish Balay   ierr   = PetscFree(work);CHKERRQ(ierr);
1364a30f8f8cSSatish Balay 
1365a30f8f8cSSatish Balay   /* post receives:   */
1366b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr);
1367b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
1368a30f8f8cSSatish Balay   for (i=0; i<nrecvs; i++) {
1369a30f8f8cSSatish Balay     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
1370a30f8f8cSSatish Balay   }
1371a30f8f8cSSatish Balay 
1372a30f8f8cSSatish Balay   /* do sends:
1373a30f8f8cSSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
1374a30f8f8cSSatish Balay      the ith processor
1375a30f8f8cSSatish Balay   */
1376b0a32e0cSBarry Smith   ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr);
1377b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1378b0a32e0cSBarry Smith   ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr);
1379a30f8f8cSSatish Balay   starts[0]  = 0;
1380a30f8f8cSSatish Balay   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
1381a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
1382a30f8f8cSSatish Balay     svalues[starts[owner[i]]++] = rows[i];
1383a30f8f8cSSatish Balay   }
1384a30f8f8cSSatish Balay   ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr);
1385a30f8f8cSSatish Balay 
1386a30f8f8cSSatish Balay   starts[0] = 0;
1387a30f8f8cSSatish Balay   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
1388a30f8f8cSSatish Balay   count = 0;
1389a30f8f8cSSatish Balay   for (i=0; i<size; i++) {
1390a30f8f8cSSatish Balay     if (procs[i]) {
1391a30f8f8cSSatish Balay       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
1392a30f8f8cSSatish Balay     }
1393a30f8f8cSSatish Balay   }
1394a30f8f8cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
1395a30f8f8cSSatish Balay 
1396a30f8f8cSSatish Balay   base = owners[rank]*bs;
1397a30f8f8cSSatish Balay 
1398a30f8f8cSSatish Balay   /*  wait on receives */
1399b0a32e0cSBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr);
1400a30f8f8cSSatish Balay   source = lens + nrecvs;
1401a30f8f8cSSatish Balay   count  = nrecvs; slen = 0;
1402a30f8f8cSSatish Balay   while (count) {
1403a30f8f8cSSatish Balay     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
1404a30f8f8cSSatish Balay     /* unpack receives into our local space */
1405a30f8f8cSSatish Balay     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
1406a30f8f8cSSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
1407a30f8f8cSSatish Balay     lens[imdex]    = n;
1408a30f8f8cSSatish Balay     slen          += n;
1409a30f8f8cSSatish Balay     count--;
1410a30f8f8cSSatish Balay   }
1411a30f8f8cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
1412a30f8f8cSSatish Balay 
1413a30f8f8cSSatish Balay   /* move the data into the send scatter */
1414b0a32e0cSBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr);
1415a30f8f8cSSatish Balay   count = 0;
1416a30f8f8cSSatish Balay   for (i=0; i<nrecvs; i++) {
1417a30f8f8cSSatish Balay     values = rvalues + i*nmax;
1418a30f8f8cSSatish Balay     for (j=0; j<lens[i]; j++) {
1419a30f8f8cSSatish Balay       lrows[count++] = values[j] - base;
1420a30f8f8cSSatish Balay     }
1421a30f8f8cSSatish Balay   }
1422a30f8f8cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1423a30f8f8cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1424a30f8f8cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1425a30f8f8cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
1426a30f8f8cSSatish Balay 
1427a30f8f8cSSatish Balay   /* actually zap the local rows */
1428a30f8f8cSSatish Balay   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
1429b0a32e0cSBarry Smith   PetscLogObjectParent(A,istmp);
1430a30f8f8cSSatish Balay 
1431a30f8f8cSSatish Balay   /*
1432a30f8f8cSSatish Balay         Zero the required rows. If the "diagonal block" of the matrix
1433a30f8f8cSSatish Balay      is square and the user wishes to set the diagonal we use seperate
1434a30f8f8cSSatish Balay      code so that MatSetValues() is not called for each diagonal allocating
1435a30f8f8cSSatish Balay      new memory, thus calling lots of mallocs and slowing things down.
1436a30f8f8cSSatish Balay 
1437a30f8f8cSSatish Balay        Contributed by: Mathew Knepley
1438a30f8f8cSSatish Balay   */
1439a30f8f8cSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1440ff64ff16SBarry Smith   ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr);
1441a30f8f8cSSatish Balay   if (diag && (l->A->M == l->A->N)) {
1442a30f8f8cSSatish Balay     ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr);
1443a30f8f8cSSatish Balay   } else if (diag) {
1444a30f8f8cSSatish Balay     ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1445a30f8f8cSSatish Balay     if (((Mat_SeqSBAIJ*)l->A->data)->nonew) {
144629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1447a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
1448a30f8f8cSSatish Balay     }
1449a30f8f8cSSatish Balay     for (i=0; i<slen; i++) {
1450a30f8f8cSSatish Balay       row  = lrows[i] + rstart_bs;
1451a30f8f8cSSatish Balay       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
1452a30f8f8cSSatish Balay     }
1453a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1454a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1455a30f8f8cSSatish Balay   } else {
1456a30f8f8cSSatish Balay     ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1457a30f8f8cSSatish Balay   }
1458a30f8f8cSSatish Balay 
1459a30f8f8cSSatish Balay   ierr = ISDestroy(istmp);CHKERRQ(ierr);
1460a30f8f8cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1461a30f8f8cSSatish Balay 
1462a30f8f8cSSatish Balay   /* wait on sends */
1463a30f8f8cSSatish Balay   if (nsends) {
146482502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1465a30f8f8cSSatish Balay     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1466a30f8f8cSSatish Balay     ierr        = PetscFree(send_status);CHKERRQ(ierr);
1467a30f8f8cSSatish Balay   }
1468a30f8f8cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1469a30f8f8cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
1470a30f8f8cSSatish Balay 
1471a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1472a30f8f8cSSatish Balay }
1473a30f8f8cSSatish Balay 
14744a2ae208SSatish Balay #undef __FUNCT__
14754a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1476a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A)
1477a30f8f8cSSatish Balay {
1478a30f8f8cSSatish Balay   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1479a30f8f8cSSatish Balay   MPI_Comm    comm = A->comm;
1480a30f8f8cSSatish Balay   static int  called = 0;
1481a30f8f8cSSatish Balay   int         ierr;
1482a30f8f8cSSatish Balay 
1483a30f8f8cSSatish Balay   PetscFunctionBegin;
1484a30f8f8cSSatish Balay   if (!a->rank) {
1485a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1486a30f8f8cSSatish Balay   }
1487a30f8f8cSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1488a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1489a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1490a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1491a30f8f8cSSatish Balay }
1492a30f8f8cSSatish Balay 
14934a2ae208SSatish Balay #undef __FUNCT__
14944a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1495a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A)
1496a30f8f8cSSatish Balay {
1497f3566a2aSHong Zhang   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1498a30f8f8cSSatish Balay   int         ierr;
1499a30f8f8cSSatish Balay 
1500a30f8f8cSSatish Balay   PetscFunctionBegin;
1501a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1502a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1503a30f8f8cSSatish Balay }
1504a30f8f8cSSatish Balay 
1505a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1506a30f8f8cSSatish Balay 
15074a2ae208SSatish Balay #undef __FUNCT__
15084a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1509a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1510a30f8f8cSSatish Balay {
1511a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1512a30f8f8cSSatish Balay   Mat         a,b,c,d;
1513a30f8f8cSSatish Balay   PetscTruth  flg;
1514a30f8f8cSSatish Balay   int         ierr;
1515a30f8f8cSSatish Balay 
1516a30f8f8cSSatish Balay   PetscFunctionBegin;
1517b5df2d14SHong Zhang   ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr);
1518b5df2d14SHong Zhang   if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type");
1519a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1520a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1521a30f8f8cSSatish Balay 
1522a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1523a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1524a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1525a30f8f8cSSatish Balay   }
1526a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1527a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1528a30f8f8cSSatish Balay }
1529a30f8f8cSSatish Balay 
15304a2ae208SSatish Balay #undef __FUNCT__
15314a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1532273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A)
1533273d9f13SBarry Smith {
1534273d9f13SBarry Smith   int        ierr;
1535273d9f13SBarry Smith 
1536273d9f13SBarry Smith   PetscFunctionBegin;
1537273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1538273d9f13SBarry Smith   PetscFunctionReturn(0);
1539273d9f13SBarry Smith }
1540a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1541a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1542a30f8f8cSSatish Balay   MatSetValues_MPISBAIJ,
1543a30f8f8cSSatish Balay   MatGetRow_MPISBAIJ,
1544a30f8f8cSSatish Balay   MatRestoreRow_MPISBAIJ,
1545a9d4b620SHong Zhang   MatMult_MPISBAIJ,
1546a30f8f8cSSatish Balay   MatMultAdd_MPISBAIJ,
1547a30f8f8cSSatish Balay   MatMultTranspose_MPISBAIJ,
1548a30f8f8cSSatish Balay   MatMultTransposeAdd_MPISBAIJ,
1549a30f8f8cSSatish Balay   0,
1550a30f8f8cSSatish Balay   0,
1551a30f8f8cSSatish Balay   0,
1552a30f8f8cSSatish Balay   0,
1553a30f8f8cSSatish Balay   0,
1554a30f8f8cSSatish Balay   0,
15552798e883SHong Zhang   MatRelax_MPISBAIJ,
1556a30f8f8cSSatish Balay   MatTranspose_MPISBAIJ,
1557a30f8f8cSSatish Balay   MatGetInfo_MPISBAIJ,
1558a30f8f8cSSatish Balay   MatEqual_MPISBAIJ,
1559a30f8f8cSSatish Balay   MatGetDiagonal_MPISBAIJ,
1560a30f8f8cSSatish Balay   MatDiagonalScale_MPISBAIJ,
1561a30f8f8cSSatish Balay   MatNorm_MPISBAIJ,
1562a30f8f8cSSatish Balay   MatAssemblyBegin_MPISBAIJ,
1563a30f8f8cSSatish Balay   MatAssemblyEnd_MPISBAIJ,
1564a30f8f8cSSatish Balay   0,
1565a30f8f8cSSatish Balay   MatSetOption_MPISBAIJ,
1566a30f8f8cSSatish Balay   MatZeroEntries_MPISBAIJ,
1567a30f8f8cSSatish Balay   MatZeroRows_MPISBAIJ,
1568a30f8f8cSSatish Balay   0,
1569a30f8f8cSSatish Balay   0,
1570a30f8f8cSSatish Balay   0,
1571a30f8f8cSSatish Balay   0,
1572273d9f13SBarry Smith   MatSetUpPreallocation_MPISBAIJ,
1573b5df2d14SHong Zhang   0,
1574a30f8f8cSSatish Balay   0,
1575a30f8f8cSSatish Balay   0,
1576a30f8f8cSSatish Balay   0,
1577a30f8f8cSSatish Balay   MatDuplicate_MPISBAIJ,
1578a30f8f8cSSatish Balay   0,
1579a30f8f8cSSatish Balay   0,
1580a30f8f8cSSatish Balay   0,
1581a30f8f8cSSatish Balay   0,
1582a30f8f8cSSatish Balay   0,
1583a30f8f8cSSatish Balay   MatGetSubMatrices_MPISBAIJ,
1584a30f8f8cSSatish Balay   MatIncreaseOverlap_MPISBAIJ,
1585a30f8f8cSSatish Balay   MatGetValues_MPISBAIJ,
1586a30f8f8cSSatish Balay   0,
1587a30f8f8cSSatish Balay   MatPrintHelp_MPISBAIJ,
1588a30f8f8cSSatish Balay   MatScale_MPISBAIJ,
1589a30f8f8cSSatish Balay   0,
1590a30f8f8cSSatish Balay   0,
1591a30f8f8cSSatish Balay   0,
1592a30f8f8cSSatish Balay   MatGetBlockSize_MPISBAIJ,
1593a30f8f8cSSatish Balay   0,
1594a30f8f8cSSatish Balay   0,
1595a30f8f8cSSatish Balay   0,
1596a30f8f8cSSatish Balay   0,
1597a30f8f8cSSatish Balay   0,
1598a30f8f8cSSatish Balay   0,
1599a30f8f8cSSatish Balay   MatSetUnfactored_MPISBAIJ,
1600a30f8f8cSSatish Balay   0,
1601a30f8f8cSSatish Balay   MatSetValuesBlocked_MPISBAIJ,
1602a30f8f8cSSatish Balay   0,
1603a30f8f8cSSatish Balay   0,
1604a30f8f8cSSatish Balay   0,
16058a124369SBarry Smith   MatGetPetscMaps_Petsc,
160624d5174aSHong Zhang   0,
160724d5174aSHong Zhang   0,
160824d5174aSHong Zhang   0,
160924d5174aSHong Zhang   0,
161024d5174aSHong Zhang   0,
161124d5174aSHong Zhang   0,
161224d5174aSHong Zhang   MatGetRowMax_MPISBAIJ};
1613a30f8f8cSSatish Balay 
1614a30f8f8cSSatish Balay 
1615a30f8f8cSSatish Balay EXTERN_C_BEGIN
16164a2ae208SSatish Balay #undef __FUNCT__
16174a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1618a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1619a30f8f8cSSatish Balay {
1620a30f8f8cSSatish Balay   PetscFunctionBegin;
1621a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1622a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1623a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1624a30f8f8cSSatish Balay }
1625a30f8f8cSSatish Balay EXTERN_C_END
1626a30f8f8cSSatish Balay 
1627273d9f13SBarry Smith EXTERN_C_BEGIN
16284a2ae208SSatish Balay #undef __FUNCT__
16294a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1630b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B)
1631b5df2d14SHong Zhang {
1632b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1633ca54ac64SHong Zhang   int          ierr;
1634b5df2d14SHong Zhang   PetscTruth   flg;
1635b5df2d14SHong Zhang 
1636b5df2d14SHong Zhang   PetscFunctionBegin;
1637b5df2d14SHong Zhang 
1638b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1639b0a32e0cSBarry Smith   B->data = (void*)b;
1640b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1641b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1642b5df2d14SHong Zhang 
1643b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1644b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1645b5df2d14SHong Zhang   B->mapping    = 0;
1646b5df2d14SHong Zhang   B->factor     = 0;
1647b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1648b5df2d14SHong Zhang 
1649b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1650b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1651b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1652b5df2d14SHong Zhang 
1653b5df2d14SHong Zhang   /* build local table of row and column ownerships */
165482502324SSatish Balay   ierr          = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1655273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1656273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
1657b0a32e0cSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1658b5df2d14SHong Zhang 
1659b5df2d14SHong Zhang   /* build cache for off array entries formed */
1660b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1661b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1662b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1663b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1664b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1665b5df2d14SHong Zhang 
1666f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1667b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
166864a35ccbSBarry Smith   b->setvalueslen     = 0;
1669b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1670b5df2d14SHong Zhang #endif
1671b5df2d14SHong Zhang 
1672b5df2d14SHong Zhang   /* stuff used in block assembly */
1673b5df2d14SHong Zhang   b->barray       = 0;
1674b5df2d14SHong Zhang 
1675b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1676b5df2d14SHong Zhang   b->lvec         = 0;
1677b5df2d14SHong Zhang   b->Mvctx        = 0;
167840781036SHong Zhang   b->slvec0       = 0;
167940781036SHong Zhang   b->slvec0b      = 0;
168040781036SHong Zhang   b->slvec1       = 0;
168140781036SHong Zhang   b->slvec1a      = 0;
168240781036SHong Zhang   b->slvec1b      = 0;
168340781036SHong Zhang   b->sMvctx       = 0;
1684b5df2d14SHong Zhang 
1685b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1686b5df2d14SHong Zhang   b->rowindices   = 0;
1687b5df2d14SHong Zhang   b->rowvalues    = 0;
1688b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1689b5df2d14SHong Zhang 
1690b5df2d14SHong Zhang   /* hash table stuff */
1691b5df2d14SHong Zhang   b->ht           = 0;
1692b5df2d14SHong Zhang   b->hd           = 0;
1693b5df2d14SHong Zhang   b->ht_size      = 0;
1694b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1695b5df2d14SHong Zhang   b->ht_fact      = 0;
1696b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1697b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1698b5df2d14SHong Zhang 
1699e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1700b5df2d14SHong Zhang   if (flg) {
1701f6275e2eSBarry Smith     PetscReal fact = 1.39;
1702b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1703e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1704b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1705b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1706b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1707b5df2d14SHong Zhang   }
1708b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1709b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1710b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1711b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1712b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1713b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1714b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1715b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1716b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1717b5df2d14SHong Zhang   PetscFunctionReturn(0);
1718b5df2d14SHong Zhang }
1719273d9f13SBarry Smith EXTERN_C_END
1720b5df2d14SHong Zhang 
17214a2ae208SSatish Balay #undef __FUNCT__
17224a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1723b5df2d14SHong Zhang /*@C
1724b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1725b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1726b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1727b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang    Collective on Mat
1730b5df2d14SHong Zhang 
1731b5df2d14SHong Zhang    Input Parameters:
1732b5df2d14SHong Zhang +  A - the matrix
1733b5df2d14SHong Zhang .  bs   - size of blockk
1734b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1735b5df2d14SHong Zhang            submatrix  (same for all local rows)
1736b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17376d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17386d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17396d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1740b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1741b5df2d14SHong Zhang            submatrix (same for all local rows).
1742b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1743b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1744b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1745b5df2d14SHong Zhang 
1746b5df2d14SHong Zhang 
1747b5df2d14SHong Zhang    Options Database Keys:
1748b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1749b5df2d14SHong Zhang                      block calculations (much slower)
1750b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1751b5df2d14SHong Zhang 
1752b5df2d14SHong Zhang    Notes:
1753b5df2d14SHong Zhang 
1754b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1755b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1756b5df2d14SHong Zhang 
1757b5df2d14SHong Zhang    Storage Information:
1758b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1759b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1760b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1761b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1762b5df2d14SHong Zhang 
1763b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1764b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1765b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1766b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1767b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1768b5df2d14SHong Zhang 
1769b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1770b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1771b5df2d14SHong Zhang 
1772b5df2d14SHong Zhang .vb
1773b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1774b5df2d14SHong Zhang           -------------------
1775b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1776b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1777b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1778b5df2d14SHong Zhang           -------------------
1779b5df2d14SHong Zhang .ve
1780b5df2d14SHong Zhang 
1781b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1782b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17836d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17846d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1785b5df2d14SHong Zhang 
17866d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
17876d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1788b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1789b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1790b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1791b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1792b5df2d14SHong Zhang    matrices.
1793b5df2d14SHong Zhang 
1794b5df2d14SHong Zhang    Level: intermediate
1795b5df2d14SHong Zhang 
1796b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1797b5df2d14SHong Zhang 
1798b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1799b5df2d14SHong Zhang @*/
1800b5df2d14SHong Zhang 
1801b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
1802b5df2d14SHong Zhang {
1803b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1804eb7adc28SSatish Balay   int          ierr,i,mbs,Mbs;
1805273d9f13SBarry Smith   PetscTruth   flg2;
1806b5df2d14SHong Zhang 
1807b5df2d14SHong Zhang   PetscFunctionBegin;
1808273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr);
1809273d9f13SBarry Smith   if (!flg2) PetscFunctionReturn(0);
1810273d9f13SBarry Smith 
1811e82a3eeeSBarry Smith   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1812b5df2d14SHong Zhang 
1813b5df2d14SHong Zhang   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1814435da068SBarry Smith   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1815435da068SBarry Smith   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1816435da068SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
1817435da068SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
1818b5df2d14SHong Zhang   if (d_nnz) {
1819b5df2d14SHong Zhang     for (i=0; i<B->m/bs; i++) {
1820b5df2d14SHong Zhang       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
1821b5df2d14SHong Zhang     }
1822b5df2d14SHong Zhang   }
1823b5df2d14SHong Zhang   if (o_nnz) {
1824b5df2d14SHong Zhang     for (i=0; i<B->m/bs; i++) {
1825b5df2d14SHong Zhang       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
1826b5df2d14SHong Zhang     }
1827b5df2d14SHong Zhang   }
182819138431SHong Zhang   B->preallocated = PETSC_TRUE;
182919138431SHong Zhang   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
183019138431SHong Zhang   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
18318a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
18328a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1833b5df2d14SHong Zhang 
1834b5df2d14SHong Zhang   b   = (Mat_MPISBAIJ*)B->data;
1835b5df2d14SHong Zhang   mbs = B->m/bs;
1836b5df2d14SHong Zhang   Mbs = B->M/bs;
1837b5df2d14SHong Zhang   if (mbs*bs != B->m) {
183819138431SHong Zhang     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs);
1839b5df2d14SHong Zhang   }
1840b5df2d14SHong Zhang 
1841b5df2d14SHong Zhang   b->bs  = bs;
1842b5df2d14SHong Zhang   b->bs2 = bs*bs;
1843b5df2d14SHong Zhang   b->mbs = mbs;
1844b5df2d14SHong Zhang   b->nbs = mbs;
1845b5df2d14SHong Zhang   b->Mbs = Mbs;
1846b5df2d14SHong Zhang   b->Nbs = Mbs;
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
1849b5df2d14SHong Zhang   b->rowners[0]    = 0;
1850b5df2d14SHong Zhang   for (i=2; i<=b->size; i++) {
1851b5df2d14SHong Zhang     b->rowners[i] += b->rowners[i-1];
1852b5df2d14SHong Zhang   }
1853b5df2d14SHong Zhang   b->rstart    = b->rowners[b->rank];
1854b5df2d14SHong Zhang   b->rend      = b->rowners[b->rank+1];
1855b5df2d14SHong Zhang   b->cstart    = b->rstart;
1856b5df2d14SHong Zhang   b->cend      = b->rend;
1857b5df2d14SHong Zhang   for (i=0; i<=b->size; i++) {
1858b5df2d14SHong Zhang     b->rowners_bs[i] = b->rowners[i]*bs;
1859b5df2d14SHong Zhang   }
1860b5df2d14SHong Zhang   b->rstart_bs = b-> rstart*bs;
1861b5df2d14SHong Zhang   b->rend_bs   = b->rend*bs;
1862b5df2d14SHong Zhang 
1863b5df2d14SHong Zhang   b->cstart_bs = b->cstart*bs;
1864b5df2d14SHong Zhang   b->cend_bs   = b->cend*bs;
1865b5df2d14SHong Zhang 
1866b5df2d14SHong Zhang 
1867b5df2d14SHong Zhang   ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
1868b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->A);
1869b5df2d14SHong Zhang   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
1870b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->B);
1871b5df2d14SHong Zhang 
1872b5df2d14SHong Zhang   /* build cache for off array entries formed */
1873b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1874b5df2d14SHong Zhang 
1875b5df2d14SHong Zhang   PetscFunctionReturn(0);
1876b5df2d14SHong Zhang }
1877b5df2d14SHong Zhang 
18784a2ae208SSatish Balay #undef __FUNCT__
18794a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1880a30f8f8cSSatish Balay /*@C
1881a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1882a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1883a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1884a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1885a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1886a30f8f8cSSatish Balay 
1887a30f8f8cSSatish Balay    Collective on MPI_Comm
1888a30f8f8cSSatish Balay 
1889a30f8f8cSSatish Balay    Input Parameters:
1890a30f8f8cSSatish Balay +  comm - MPI communicator
1891a30f8f8cSSatish Balay .  bs   - size of blockk
1892a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1893a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1894a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1895a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1896a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1897a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1898a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1899a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1900a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1901a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1902a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19036d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19046d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19056d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1906a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1907a30f8f8cSSatish Balay            submatrix (same for all local rows).
1908a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1909a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1910a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1911a30f8f8cSSatish Balay 
1912a30f8f8cSSatish Balay    Output Parameter:
1913a30f8f8cSSatish Balay .  A - the matrix
1914a30f8f8cSSatish Balay 
1915a30f8f8cSSatish Balay    Options Database Keys:
1916a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1917a30f8f8cSSatish Balay                      block calculations (much slower)
1918a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1919a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1920a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1921a30f8f8cSSatish Balay 
1922a30f8f8cSSatish Balay    Notes:
1923a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1924a30f8f8cSSatish Balay    (possibly both).
1925a30f8f8cSSatish Balay 
1926a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1927a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1928a30f8f8cSSatish Balay 
1929a30f8f8cSSatish Balay    Storage Information:
1930a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1931a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1932a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1933a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1934a30f8f8cSSatish Balay 
1935a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1936a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1937a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1938a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1939a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1940a30f8f8cSSatish Balay 
1941a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1942a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1943a30f8f8cSSatish Balay 
1944a30f8f8cSSatish Balay .vb
1945a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1946a30f8f8cSSatish Balay           -------------------
1947a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1948a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1949a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1950a30f8f8cSSatish Balay           -------------------
1951a30f8f8cSSatish Balay .ve
1952a30f8f8cSSatish Balay 
1953a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1954a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19556d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19566d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1957a30f8f8cSSatish Balay 
19586d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19596d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1960a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1961a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1962a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1963a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1964a30f8f8cSSatish Balay    matrices.
1965a30f8f8cSSatish Balay 
1966a30f8f8cSSatish Balay    Level: intermediate
1967a30f8f8cSSatish Balay 
1968a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1969a30f8f8cSSatish Balay 
1970a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1971a30f8f8cSSatish Balay @*/
1972a30f8f8cSSatish Balay 
1973a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
1974a30f8f8cSSatish Balay {
1975273d9f13SBarry Smith   int ierr,size;
1976a30f8f8cSSatish Balay 
1977a30f8f8cSSatish Balay   PetscFunctionBegin;
1978b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
1979273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1980273d9f13SBarry Smith   if (size > 1) {
1981b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1982b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1983273d9f13SBarry Smith   } else {
1984273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1985273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1986273d9f13SBarry Smith   }
1987a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1988a30f8f8cSSatish Balay }
1989a30f8f8cSSatish Balay 
1990a30f8f8cSSatish Balay 
19914a2ae208SSatish Balay #undef __FUNCT__
19924a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
1993a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1994a30f8f8cSSatish Balay {
1995a30f8f8cSSatish Balay   Mat          mat;
1996a30f8f8cSSatish Balay   Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1997a30f8f8cSSatish Balay   int          ierr,len=0;
1998a30f8f8cSSatish Balay 
1999a30f8f8cSSatish Balay   PetscFunctionBegin;
2000a30f8f8cSSatish Balay   *newmat       = 0;
2001b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2002b5df2d14SHong Zhang   ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr);
2003273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
2004b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2005a30f8f8cSSatish Balay   a->bs  = oldmat->bs;
2006a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2007a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2008a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2009a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2010a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2011a30f8f8cSSatish Balay 
2012a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
2013a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
2014a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
2015a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
2016a30f8f8cSSatish Balay   a->size         = oldmat->size;
2017a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2018a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2019a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2020a30f8f8cSSatish Balay   a->rowindices   = 0;
2021a30f8f8cSSatish Balay   a->rowvalues    = 0;
2022a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2023a30f8f8cSSatish Balay   a->barray       = 0;
2024a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
2025a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
2026a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
2027a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
2028a30f8f8cSSatish Balay 
2029a30f8f8cSSatish Balay   /* hash table stuff */
2030a30f8f8cSSatish Balay   a->ht           = 0;
2031a30f8f8cSSatish Balay   a->hd           = 0;
2032a30f8f8cSSatish Balay   a->ht_size      = 0;
2033a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2034a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2035a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2036a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2037a30f8f8cSSatish Balay 
203882502324SSatish Balay   ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr);
2039b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
2040a30f8f8cSSatish Balay   a->cowners    = a->rowners + a->size + 2;
2041a30f8f8cSSatish Balay   a->rowners_bs = a->cowners + a->size + 2;
2042a30f8f8cSSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
2043a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2044a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
2045a30f8f8cSSatish Balay   if (oldmat->colmap) {
2046a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2047a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2048a30f8f8cSSatish Balay #else
204982502324SSatish Balay     ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr);
2050b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2051a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
2052a30f8f8cSSatish Balay #endif
2053a30f8f8cSSatish Balay   } else a->colmap = 0;
2054a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
205582502324SSatish Balay     ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr);
2056b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
2057a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
2058a30f8f8cSSatish Balay   } else a->garray = 0;
2059a30f8f8cSSatish Balay 
2060a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2061b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2062a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2063a30f8f8cSSatish Balay 
2064b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
2065a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2066b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2067a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2068b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2069b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2070a30f8f8cSSatish Balay   *newmat = mat;
2071a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2072a30f8f8cSSatish Balay }
2073a30f8f8cSSatish Balay 
2074a30f8f8cSSatish Balay #include "petscsys.h"
2075a30f8f8cSSatish Balay 
2076273d9f13SBarry Smith EXTERN_C_BEGIN
20774a2ae208SSatish Balay #undef __FUNCT__
20784a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2079b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat)
2080a30f8f8cSSatish Balay {
2081a30f8f8cSSatish Balay   Mat          A;
2082a30f8f8cSSatish Balay   int          i,nz,ierr,j,rstart,rend,fd;
208387828ca2SBarry Smith   PetscScalar  *vals,*buf;
2084a30f8f8cSSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
2085a30f8f8cSSatish Balay   MPI_Status   status;
2086a30f8f8cSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
2087a30f8f8cSSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
2088a30f8f8cSSatish Balay   int          tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
2089a30f8f8cSSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2090a30f8f8cSSatish Balay   int          dcount,kmax,k,nzcount,tmp;
2091a30f8f8cSSatish Balay 
2092a30f8f8cSSatish Balay   PetscFunctionBegin;
2093b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2094a30f8f8cSSatish Balay 
2095a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2096a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2097a30f8f8cSSatish Balay   if (!rank) {
2098b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2099a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2100552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2101a30f8f8cSSatish Balay     if (header[3] < 0) {
210229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2103a30f8f8cSSatish Balay     }
2104a30f8f8cSSatish Balay   }
2105a30f8f8cSSatish Balay 
2106a30f8f8cSSatish Balay   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
2107a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2108a30f8f8cSSatish Balay 
210929bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2110a30f8f8cSSatish Balay 
2111a30f8f8cSSatish Balay   /*
2112a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2113a30f8f8cSSatish Balay      divisible by the blocksize
2114a30f8f8cSSatish Balay   */
2115a30f8f8cSSatish Balay   Mbs        = M/bs;
2116a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2117a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2118a30f8f8cSSatish Balay   else                  Mbs++;
2119a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2120b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2121a30f8f8cSSatish Balay   }
2122a30f8f8cSSatish Balay 
2123a30f8f8cSSatish Balay   /* determine ownership of all rows */
2124a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2125a30f8f8cSSatish Balay   m          = mbs*bs;
2126b0a32e0cSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
2127a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2128a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2129a30f8f8cSSatish Balay   rowners[0] = 0;
2130a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2131a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2132a30f8f8cSSatish Balay   rstart = rowners[rank];
2133a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2134a30f8f8cSSatish Balay 
2135a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
213682502324SSatish Balay   ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr);
2137a30f8f8cSSatish Balay   if (!rank) {
2138b0a32e0cSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
2139a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2140a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
214182502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
2142a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2143a30f8f8cSSatish Balay     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2144a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2145a30f8f8cSSatish Balay   } else {
2146a30f8f8cSSatish Balay     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2147a30f8f8cSSatish Balay   }
2148a30f8f8cSSatish Balay 
21490222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2150a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
215182502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
2152a30f8f8cSSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
2153a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2154a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2155a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2156a30f8f8cSSatish Balay       }
2157a30f8f8cSSatish Balay     }
2158a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2159a30f8f8cSSatish Balay 
2160a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2161a30f8f8cSSatish Balay     maxnz = 0;
2162a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2163a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2164a30f8f8cSSatish Balay     }
216582502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
2166a30f8f8cSSatish Balay 
2167a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2168a30f8f8cSSatish Balay     nz     = procsnz[0];
216982502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2170a30f8f8cSSatish Balay     mycols = ibuf;
2171a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2172a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2173a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2174a30f8f8cSSatish Balay 
2175a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2176a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2177a30f8f8cSSatish Balay       nz   = procsnz[i];
2178a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay     }
2181a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2182a30f8f8cSSatish Balay     if (size != 1) {
2183a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2184a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2185a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2186a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
2187a30f8f8cSSatish Balay     }
2188a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21890222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2190a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2191a30f8f8cSSatish Balay     nz = 0;
2192a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2193a30f8f8cSSatish Balay       nz += locrowlens[i];
2194a30f8f8cSSatish Balay     }
219582502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2196a30f8f8cSSatish Balay     mycols = ibuf;
2197a30f8f8cSSatish Balay     /* receive message of column indices*/
2198a30f8f8cSSatish Balay     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2199a30f8f8cSSatish Balay     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
220029bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2201a30f8f8cSSatish Balay   }
2202a30f8f8cSSatish Balay 
2203a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
220482502324SSatish Balay   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr);
2205a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
220682502324SSatish Balay   ierr     = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr);
2207a30f8f8cSSatish Balay   ierr     = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
2208a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2209a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2210a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2211a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2212a30f8f8cSSatish Balay     dcount  = 0;
2213a30f8f8cSSatish Balay     odcount = 0;
2214a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2215a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2216a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22170222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2218a30f8f8cSSatish Balay         if (!mask[tmp]) {
2219a30f8f8cSSatish Balay           mask[tmp] = 1;
22200222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22210222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2222a30f8f8cSSatish Balay         }
2223a30f8f8cSSatish Balay       }
2224a30f8f8cSSatish Balay       rowcount++;
2225a30f8f8cSSatish Balay     }
2226a30f8f8cSSatish Balay 
22270222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22280222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2229a30f8f8cSSatish Balay 
2230a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2231a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2232a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2233a30f8f8cSSatish Balay   }
2234a30f8f8cSSatish Balay 
2235a30f8f8cSSatish Balay   /* create our matrix */
22367e06b45fSHong Zhang   ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat);
2237bfe19f1aSHong Zhang   CHKERRQ(ierr);
2238a30f8f8cSSatish Balay   A = *newmat;
2239273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2240a30f8f8cSSatish Balay 
2241a30f8f8cSSatish Balay   if (!rank) {
224287828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2243a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2244a30f8f8cSSatish Balay     nz = procsnz[0];
2245a30f8f8cSSatish Balay     vals = buf;
2246a30f8f8cSSatish Balay     mycols = ibuf;
2247a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2248a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2249a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2250a30f8f8cSSatish Balay 
2251a30f8f8cSSatish Balay     /* insert into matrix */
2252a30f8f8cSSatish Balay     jj      = rstart*bs;
2253a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22547e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2255a30f8f8cSSatish Balay       mycols += locrowlens[i];
2256a30f8f8cSSatish Balay       vals   += locrowlens[i];
2257a30f8f8cSSatish Balay       jj++;
2258a30f8f8cSSatish Balay     }
22597e06b45fSHong Zhang 
2260a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2261a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2262a30f8f8cSSatish Balay       nz   = procsnz[i];
2263a30f8f8cSSatish Balay       vals = buf;
2264a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay     }
2267a30f8f8cSSatish Balay     /* the last proc */
2268a30f8f8cSSatish Balay     if (size != 1){
2269a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2270a30f8f8cSSatish Balay       vals = buf;
2271a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2272a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2273a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2274a30f8f8cSSatish Balay     }
2275a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22767e06b45fSHong Zhang 
2277a30f8f8cSSatish Balay   } else {
2278a30f8f8cSSatish Balay     /* receive numeric values */
227987828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2280a30f8f8cSSatish Balay 
2281a30f8f8cSSatish Balay     /* receive message of values*/
2282a30f8f8cSSatish Balay     vals   = buf;
2283a30f8f8cSSatish Balay     mycols = ibuf;
2284a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2285a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
228629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2287a30f8f8cSSatish Balay 
2288a30f8f8cSSatish Balay     /* insert into matrix */
2289a30f8f8cSSatish Balay     jj      = rstart*bs;
2290a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2291a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2292a30f8f8cSSatish Balay       mycols += locrowlens[i];
2293a30f8f8cSSatish Balay       vals   += locrowlens[i];
2294a30f8f8cSSatish Balay       jj++;
2295a30f8f8cSSatish Balay     }
2296a30f8f8cSSatish Balay   }
22977e06b45fSHong Zhang 
2298a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2299a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2300a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2301a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2302a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2303a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2304a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2305a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2306a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2307a30f8f8cSSatish Balay }
2308273d9f13SBarry Smith EXTERN_C_END
2309a30f8f8cSSatish Balay 
23104a2ae208SSatish Balay #undef __FUNCT__
23114a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2312a30f8f8cSSatish Balay /*@
2313a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2314a30f8f8cSSatish Balay 
2315a30f8f8cSSatish Balay    Input Parameters:
2316a30f8f8cSSatish Balay .  mat  - the matrix
2317a30f8f8cSSatish Balay .  fact - factor
2318a30f8f8cSSatish Balay 
2319a30f8f8cSSatish Balay    Collective on Mat
2320a30f8f8cSSatish Balay 
2321a30f8f8cSSatish Balay    Level: advanced
2322a30f8f8cSSatish Balay 
2323a30f8f8cSSatish Balay   Notes:
2324a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2325a30f8f8cSSatish Balay 
2326a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2327a30f8f8cSSatish Balay 
2328a30f8f8cSSatish Balay .seealso: MatSetOption()
2329a30f8f8cSSatish Balay @*/
2330a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2331a30f8f8cSSatish Balay {
2332a30f8f8cSSatish Balay   PetscFunctionBegin;
233329bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
233496e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2335a30f8f8cSSatish Balay }
233624d5174aSHong Zhang 
23374a2ae208SSatish Balay #undef __FUNCT__
23384a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
233924d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v)
234024d5174aSHong Zhang {
234124d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
2342f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(a->B)->data;
2343ca54ac64SHong Zhang   PetscReal    atmp;
234487828ca2SBarry Smith   PetscReal    *work,*svalues,*rvalues;
2345ca54ac64SHong Zhang   int          ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
2346154bba0bSHong Zhang   int          rank,size,*rowners_bs,dest,count,source;
234787828ca2SBarry Smith   PetscScalar  *va;
23488a1c53f2SBarry Smith   MatScalar    *ba;
2349f4c0e9e4SHong Zhang   MPI_Status   stat;
235024d5174aSHong Zhang 
235124d5174aSHong Zhang   PetscFunctionBegin;
2352d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
2353f4c0e9e4SHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2354f4c0e9e4SHong Zhang 
2355ac355199SBarry Smith   ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr);
2356ac355199SBarry Smith   ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr);
2357f4c0e9e4SHong Zhang 
2358f4c0e9e4SHong Zhang   bs   = a->bs;
2359f4c0e9e4SHong Zhang   mbs  = a->mbs;
2360f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2361f4c0e9e4SHong Zhang   ba   = b->a;
2362f4c0e9e4SHong Zhang   bi   = b->i;
2363f4c0e9e4SHong Zhang   bj   = b->j;
2364ca54ac64SHong Zhang   /*
2365f4c0e9e4SHong Zhang   PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs);
2366f4c0e9e4SHong Zhang   PetscSynchronizedFlush(PETSC_COMM_WORLD);
2367ca54ac64SHong Zhang   */
2368f4c0e9e4SHong Zhang 
2369f4c0e9e4SHong Zhang   /* find ownerships */
2370f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2371f4c0e9e4SHong Zhang   /*
237204d41228SHong Zhang   if (!rank){
237304d41228SHong Zhang     for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]);
2374f4c0e9e4SHong Zhang   }
2375f4c0e9e4SHong Zhang   */
2376f4c0e9e4SHong Zhang 
2377f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
237882502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2379ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2380f4c0e9e4SHong Zhang 
2381f4c0e9e4SHong Zhang   /* row_max for B */
2382b8475685SHong Zhang   if (rank != size-1){
2383f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2384f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2385f4c0e9e4SHong Zhang       brow  = bs*i;
2386f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2387f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2388f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2389ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
239004d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2391ca54ac64SHong Zhang           /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */
2392f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2393f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2394ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2395f4c0e9e4SHong Zhang             /* printf("val[%d,%d]: %g\n",row,col,atmp); */
2396ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2397f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2398f4c0e9e4SHong Zhang           }
2399f4c0e9e4SHong Zhang         }
2400f4c0e9e4SHong Zhang         bj++;
2401f4c0e9e4SHong Zhang       }
2402f4c0e9e4SHong Zhang     }
240304d41228SHong Zhang     /*
240404d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank);
240504d41228SHong Zhang       for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]);
240604d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d]: \n");
240704d41228SHong Zhang       */
2408f4c0e9e4SHong Zhang 
2409f4c0e9e4SHong Zhang     /* send values to its owners */
2410f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2411f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2412ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2413d7d1e502SBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr);
2414ca54ac64SHong Zhang       /*
241504d41228SHong Zhang       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]);
2416f4c0e9e4SHong Zhang       PetscSynchronizedFlush(PETSC_COMM_WORLD);
2417ca54ac64SHong Zhang       */
2418ca54ac64SHong Zhang     }
2419f4c0e9e4SHong Zhang   }
2420f4c0e9e4SHong Zhang 
2421f4c0e9e4SHong Zhang   /* receive values */
2422ca54ac64SHong Zhang   if (rank){
2423f4c0e9e4SHong Zhang     rvalues = work;
2424ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2425f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
2426d7d1e502SBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr);
2427f4c0e9e4SHong Zhang       /* process values */
2428f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2429ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2430f4c0e9e4SHong Zhang       }
2431ca54ac64SHong Zhang       /*
243204d41228SHong Zhang       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]);
2433f4c0e9e4SHong Zhang       PetscSynchronizedFlush(PETSC_COMM_WORLD);
2434ca54ac64SHong Zhang       */
2435f4c0e9e4SHong Zhang     }
2436ca54ac64SHong Zhang   }
2437f4c0e9e4SHong Zhang 
2438f4c0e9e4SHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2439ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
244024d5174aSHong Zhang   PetscFunctionReturn(0);
244124d5174aSHong Zhang }
24422798e883SHong Zhang 
24432798e883SHong Zhang #undef __FUNCT__
24442798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
2445c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
24462798e883SHong Zhang {
24472798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2448ffe4fb16SHong Zhang   int            ierr,mbs=mat->mbs,bs=mat->bs;
2449ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2450ffe4fb16SHong Zhang   Vec            bb1;
2451ffe4fb16SHong Zhang 
2452ffe4fb16SHong Zhang   PetscFunctionBegin;
2453ffe4fb16SHong Zhang   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
2454ffe4fb16SHong Zhang   if (bs > 1)
2455ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2456ffe4fb16SHong Zhang 
2457ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2458ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2459ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2460ffe4fb16SHong Zhang       its--;
2461ffe4fb16SHong Zhang     }
2462ffe4fb16SHong Zhang 
2463ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2464ffe4fb16SHong Zhang     while (its--){
2465ffe4fb16SHong Zhang 
2466ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2467ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2468ffe4fb16SHong Zhang 
2469ffe4fb16SHong Zhang       /* copy xx into slvec0a */
2470ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2471ffe4fb16SHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2472ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2473ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2474ffe4fb16SHong Zhang 
2475ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2476ffe4fb16SHong Zhang 
2477ffe4fb16SHong Zhang       /* copy bb into slvec1a */
2478ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2479ffe4fb16SHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2480ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2481ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2482ffe4fb16SHong Zhang 
2483ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2484ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2485ffe4fb16SHong Zhang 
2486ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2487ffe4fb16SHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2488ffe4fb16SHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2489ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2490ffe4fb16SHong Zhang 
2491ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2492ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2493ffe4fb16SHong Zhang 
2494ffe4fb16SHong Zhang       /* local diagonal sweep */
2495ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2496ffe4fb16SHong Zhang     }
2497ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2498ffe4fb16SHong Zhang   } else {
2499ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2500ffe4fb16SHong Zhang   }
2501ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2502ffe4fb16SHong Zhang }
2503ffe4fb16SHong Zhang 
2504ffe4fb16SHong Zhang #undef __FUNCT__
2505ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
2506ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
2507ffe4fb16SHong Zhang {
2508ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
25092798e883SHong Zhang   int            ierr;
2510d05c616dSSatish Balay   PetscScalar    mone=-1.0;
25112798e883SHong Zhang   Vec            lvec1,bb1;
25122798e883SHong Zhang 
25132798e883SHong Zhang   PetscFunctionBegin;
251491723122SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
25152798e883SHong Zhang   if (mat->bs > 1)
25162798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25172798e883SHong Zhang 
2518c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25192798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2520bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25212798e883SHong Zhang       its--;
25222798e883SHong Zhang     }
25232798e883SHong Zhang 
25242798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25252798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25262798e883SHong Zhang     while (its--){
25272798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25282798e883SHong Zhang 
25292798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25302798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
25312798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
25322798e883SHong Zhang 
25332798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25342798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25352798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25362798e883SHong Zhang 
25372798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
25382798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
25392798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25402798e883SHong Zhang 
25412798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25422798e883SHong Zhang 
2543c14dc6b6SHong Zhang       /* diagonal sweep */
2544bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25452798e883SHong Zhang     }
25462798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25472798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2548c14dc6b6SHong Zhang   } else {
2549c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2550c14dc6b6SHong Zhang   }
25512798e883SHong Zhang   PetscFunctionReturn(0);
25522798e883SHong Zhang }
25532798e883SHong Zhang 
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