1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 74a2ae208SSatish Balay #undef __FUNCT__ 84a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 97087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 10a30f8f8cSSatish Balay { 11f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 12dfbe8321SBarry Smith PetscErrorCode ierr; 13a30f8f8cSSatish Balay 14a30f8f8cSSatish Balay PetscFunctionBegin; 15a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 16a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 17a30f8f8cSSatish Balay PetscFunctionReturn(0); 18a30f8f8cSSatish Balay } 19a30f8f8cSSatish Balay 204a2ae208SSatish Balay #undef __FUNCT__ 214a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 227087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 23a30f8f8cSSatish Balay { 24f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 25dfbe8321SBarry Smith PetscErrorCode ierr; 26a30f8f8cSSatish Balay 27a30f8f8cSSatish Balay PetscFunctionBegin; 28a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 29a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 30a30f8f8cSSatish Balay PetscFunctionReturn(0); 31a30f8f8cSSatish Balay } 32a30f8f8cSSatish Balay 33a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 34a30f8f8cSSatish Balay { \ 35a30f8f8cSSatish Balay \ 36a30f8f8cSSatish Balay brow = row/bs; \ 37a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 38a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 39a30f8f8cSSatish Balay bcol = col/bs; \ 40a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 41a30f8f8cSSatish Balay low = 0; high = nrow; \ 42a30f8f8cSSatish Balay while (high-low > 3) { \ 43a30f8f8cSSatish Balay t = (low+high)/2; \ 44a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 45a30f8f8cSSatish Balay else low = t; \ 46a30f8f8cSSatish Balay } \ 47a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 48a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 49a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 50a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 51a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 52a30f8f8cSSatish Balay else *bap = value; \ 53a30f8f8cSSatish Balay goto a_noinsert; \ 54a30f8f8cSSatish Balay } \ 55a30f8f8cSSatish Balay } \ 56a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 57e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 58fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 59a30f8f8cSSatish Balay N = nrow++ - 1; \ 60a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 61a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 62a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 63a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 64a30f8f8cSSatish Balay } \ 65a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 66a30f8f8cSSatish Balay rp[_i] = bcol; \ 67a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 68e56f5c9eSBarry Smith A->nonzerostate++;\ 69a30f8f8cSSatish Balay a_noinsert:; \ 70a30f8f8cSSatish Balay ailen[brow] = nrow; \ 71a30f8f8cSSatish Balay } 72e5e170daSBarry Smith 73a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 74a30f8f8cSSatish Balay { \ 75a30f8f8cSSatish Balay brow = row/bs; \ 76a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 77a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 78a30f8f8cSSatish Balay bcol = col/bs; \ 79a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 80a30f8f8cSSatish Balay low = 0; high = nrow; \ 81a30f8f8cSSatish Balay while (high-low > 3) { \ 82a30f8f8cSSatish Balay t = (low+high)/2; \ 83a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 84a30f8f8cSSatish Balay else low = t; \ 85a30f8f8cSSatish Balay } \ 86a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 87a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 88a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 89a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 90a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 91a30f8f8cSSatish Balay else *bap = value; \ 92a30f8f8cSSatish Balay goto b_noinsert; \ 93a30f8f8cSSatish Balay } \ 94a30f8f8cSSatish Balay } \ 95a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 96e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 97fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 98a30f8f8cSSatish Balay N = nrow++ - 1; \ 99a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 100a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 101a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 102a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 103a30f8f8cSSatish Balay } \ 104a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 105a30f8f8cSSatish Balay rp[_i] = bcol; \ 106a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 107e56f5c9eSBarry Smith B->nonzerostate++;\ 108a30f8f8cSSatish Balay b_noinsert:; \ 109a30f8f8cSSatish Balay bilen[brow] = nrow; \ 110a30f8f8cSSatish Balay } 111a30f8f8cSSatish Balay 112a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 113a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 114a30f8f8cSSatish Balay */ 1154a2ae208SSatish Balay #undef __FUNCT__ 116dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 117dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 118a30f8f8cSSatish Balay { 119a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 120a30f8f8cSSatish Balay MatScalar value; 121ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 122dfbe8321SBarry Smith PetscErrorCode ierr; 1231302d50aSBarry Smith PetscInt i,j,row,col; 124d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 125d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 126d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 127a30f8f8cSSatish Balay 128a30f8f8cSSatish Balay /* Some Variables required in the macro */ 129a30f8f8cSSatish Balay Mat A = baij->A; 130a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1311302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 132a30f8f8cSSatish Balay MatScalar *aa =a->a; 133a30f8f8cSSatish Balay 134a30f8f8cSSatish Balay Mat B = baij->B; 135a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1361302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 137a30f8f8cSSatish Balay MatScalar *ba =b->a; 138a30f8f8cSSatish Balay 1391302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1401302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 141a30f8f8cSSatish Balay MatScalar *ap,*bap; 142a30f8f8cSSatish Balay 143a30f8f8cSSatish Balay /* for stash */ 1440298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1450298fd71SBarry Smith MatScalar *v_loc = NULL; 146a30f8f8cSSatish Balay 147a30f8f8cSSatish Balay PetscFunctionBegin; 148a30f8f8cSSatish Balay if (!baij->donotstash) { 14959ffdab8SBarry Smith if (n > baij->n_loc) { 15059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 152785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 153785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15426fbe8dcSKarl Rupp 15559ffdab8SBarry Smith baij->n_loc = n; 15659ffdab8SBarry Smith } 15759ffdab8SBarry Smith in_loc = baij->in_loc; 15859ffdab8SBarry Smith v_loc = baij->v_loc; 159a30f8f8cSSatish Balay } 160a30f8f8cSSatish Balay 161a30f8f8cSSatish Balay for (i=0; i<m; i++) { 162a30f8f8cSSatish Balay if (im[i] < 0) continue; 1632515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 164e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 165a30f8f8cSSatish Balay #endif 166a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 167a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 168a30f8f8cSSatish Balay for (j=0; j<n; j++) { 16901b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17001b2bd88SHong Zhang if (a->ignore_ltriangular) { 17101b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17226fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17301b2bd88SHong Zhang } 174a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 175a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 176a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 177a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 178db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 179db4deed7SKarl Rupp else value = v[i+j*m]; 180a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 181a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 182a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 184cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 185a30f8f8cSSatish Balay #endif 186a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 187a30f8f8cSSatish Balay if (mat->was_assembled) { 188a30f8f8cSSatish Balay if (!baij->colmap) { 189ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 190a30f8f8cSSatish Balay } 191a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 192a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19371730473SSatish Balay col = col - 1; 194a30f8f8cSSatish Balay #else 19571730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 196a30f8f8cSSatish Balay #endif 197a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 198ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 199a30f8f8cSSatish Balay col = in[j]; 200a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 201a30f8f8cSSatish Balay B = baij->B; 202a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 203a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 204a30f8f8cSSatish Balay ba = b->a; 20571730473SSatish Balay } else col += in[j]%bs; 206a30f8f8cSSatish Balay } else col = in[j]; 207db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 208db4deed7SKarl Rupp else value = v[i+j*m]; 209a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 210a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 211a30f8f8cSSatish Balay } 212a30f8f8cSSatish Balay } 213a30f8f8cSSatish Balay } else { /* off processor entry */ 2144cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 215a30f8f8cSSatish Balay if (!baij->donotstash) { 2165080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 217a30f8f8cSSatish Balay n_loc = 0; 218a30f8f8cSSatish Balay for (j=0; j<n; j++) { 219f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 220a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 221a30f8f8cSSatish Balay if (roworiented) { 222a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 223a30f8f8cSSatish Balay } else { 224a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 225a30f8f8cSSatish Balay } 226a30f8f8cSSatish Balay n_loc++; 227a30f8f8cSSatish Balay } 228b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 229a30f8f8cSSatish Balay } 230a30f8f8cSSatish Balay } 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay PetscFunctionReturn(0); 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay 2354a2ae208SSatish Balay #undef __FUNCT__ 236dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 237dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 238a30f8f8cSSatish Balay { 2390880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 240f15d580aSBarry Smith const MatScalar *value; 241f15d580aSBarry Smith MatScalar *barray =baij->barray; 242ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 243dfbe8321SBarry Smith PetscErrorCode ierr; 244899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 245899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 246d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2470880e062SHong Zhang 248a30f8f8cSSatish Balay PetscFunctionBegin; 2490880e062SHong Zhang if (!barray) { 250785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 2510880e062SHong Zhang baij->barray = barray; 2520880e062SHong Zhang } 2530880e062SHong Zhang 2540880e062SHong Zhang if (roworiented) { 2550880e062SHong Zhang stepval = (n-1)*bs; 2560880e062SHong Zhang } else { 2570880e062SHong Zhang stepval = (m-1)*bs; 2580880e062SHong Zhang } 2590880e062SHong Zhang for (i=0; i<m; i++) { 2600880e062SHong Zhang if (im[i] < 0) continue; 2612515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 262e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2630880e062SHong Zhang #endif 2640880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2650880e062SHong Zhang row = im[i] - rstart; 2660880e062SHong Zhang for (j=0; j<n; j++) { 267f3f98c53SJed Brown if (im[i] > in[j]) { 268f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 269e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 270f3f98c53SJed Brown } 2710880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2720880e062SHong Zhang if ((roworiented) && (n == 1)) { 273f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2740880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 275f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2760880e062SHong Zhang } else { /* Here a copy is required */ 2770880e062SHong Zhang if (roworiented) { 2780880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2790880e062SHong Zhang } else { 2800880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2810880e062SHong Zhang } 2820880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2830880e062SHong Zhang for (jj=0; jj<bs; jj++) { 2840880e062SHong Zhang *barray++ = *value++; 2850880e062SHong Zhang } 2860880e062SHong Zhang } 2870880e062SHong Zhang barray -=bs2; 2880880e062SHong Zhang } 2890880e062SHong Zhang 2900880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 2910880e062SHong Zhang col = in[j] - cstart; 2920880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 29326fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 2942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 295cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 2960880e062SHong Zhang #endif 2970880e062SHong Zhang else { 2980880e062SHong Zhang if (mat->was_assembled) { 2990880e062SHong Zhang if (!baij->colmap) { 300ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3010880e062SHong Zhang } 3020880e062SHong Zhang 3032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3040880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3051302d50aSBarry Smith { PetscInt data; 3060880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 307e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3080880e062SHong Zhang } 3090880e062SHong Zhang #else 310e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3110880e062SHong Zhang #endif 3120880e062SHong Zhang #endif 3130880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3140880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3150880e062SHong Zhang col = (col - 1)/bs; 3160880e062SHong Zhang #else 3170880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3180880e062SHong Zhang #endif 3190880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 320ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3210880e062SHong Zhang col = in[j]; 3220880e062SHong Zhang } 32326fbe8dcSKarl Rupp } else col = in[j]; 324e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3250880e062SHong Zhang } 3260880e062SHong Zhang } 3270880e062SHong Zhang } else { 3284cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3290880e062SHong Zhang if (!baij->donotstash) { 3300880e062SHong Zhang if (roworiented) { 3310880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3320880e062SHong Zhang } else { 3330880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3340880e062SHong Zhang } 3350880e062SHong Zhang } 3360880e062SHong Zhang } 3370880e062SHong Zhang } 3380880e062SHong Zhang PetscFunctionReturn(0); 339a30f8f8cSSatish Balay } 340a30f8f8cSSatish Balay 3414a2ae208SSatish Balay #undef __FUNCT__ 3424a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3431302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 344a30f8f8cSSatish Balay { 345f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3466849ba73SBarry Smith PetscErrorCode ierr; 347d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 348d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 349a30f8f8cSSatish Balay 350a30f8f8cSSatish Balay PetscFunctionBegin; 351a30f8f8cSSatish Balay for (i=0; i<m; i++) { 352e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 353e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 354a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 355a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 356a30f8f8cSSatish Balay for (j=0; j<n; j++) { 357e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 358e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 359a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 360a30f8f8cSSatish Balay col = idxn[j] - bscstart; 361c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 362a30f8f8cSSatish Balay } else { 363a30f8f8cSSatish Balay if (!baij->colmap) { 364ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 365a30f8f8cSSatish Balay } 366a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 367a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 368a30f8f8cSSatish Balay data--; 369a30f8f8cSSatish Balay #else 370a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 371a30f8f8cSSatish Balay #endif 372a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 373a30f8f8cSSatish Balay else { 374a30f8f8cSSatish Balay col = data + idxn[j]%bs; 375e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 376a30f8f8cSSatish Balay } 377a30f8f8cSSatish Balay } 378a30f8f8cSSatish Balay } 379f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay PetscFunctionReturn(0); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay 3844a2ae208SSatish Balay #undef __FUNCT__ 3854a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 386dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 387a30f8f8cSSatish Balay { 388a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 389dfbe8321SBarry Smith PetscErrorCode ierr; 390a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 391a30f8f8cSSatish Balay 392a30f8f8cSSatish Balay PetscFunctionBegin; 393a30f8f8cSSatish Balay if (baij->size == 1) { 394a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 395a30f8f8cSSatish Balay } else { 396a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 397785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 398a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 399a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 400a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 401a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 402ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4038f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 404a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4050b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4060b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4070b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4080b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 409899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 410d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4110b8dc8d2SHong Zhang MatScalar *v; 4120b8dc8d2SHong Zhang 413dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 414d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4150b8dc8d2SHong Zhang /* Amat */ 4160b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4170b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4180b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4190b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4200b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4210b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4220b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4230b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4240b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4250b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4260b8dc8d2SHong Zhang /* non-diagonal block */ 4270b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4280b8dc8d2SHong Zhang } 4290b8dc8d2SHong Zhang } 4300b8dc8d2SHong Zhang } 4310b8dc8d2SHong Zhang } 4320b8dc8d2SHong Zhang /* Bmat */ 4330b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4340b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4350b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4360b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4370b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4380b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4390b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4400b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4410b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4420b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4430b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4440b8dc8d2SHong Zhang } 4450b8dc8d2SHong Zhang } 4460b8dc8d2SHong Zhang } 4470b8dc8d2SHong Zhang } 448ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4490b8dc8d2SHong Zhang *norm = 0.0; 450d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4510b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4520b8dc8d2SHong Zhang } 45374ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 454f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 455a30f8f8cSSatish Balay } 456a30f8f8cSSatish Balay PetscFunctionReturn(0); 457a30f8f8cSSatish Balay } 458a30f8f8cSSatish Balay 4594a2ae208SSatish Balay #undef __FUNCT__ 4604a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 461dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 462a30f8f8cSSatish Balay { 463a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 464dfbe8321SBarry Smith PetscErrorCode ierr; 4651302d50aSBarry Smith PetscInt nstash,reallocs; 466a30f8f8cSSatish Balay InsertMode addv; 467a30f8f8cSSatish Balay 468a30f8f8cSSatish Balay PetscFunctionBegin; 46926fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 470a30f8f8cSSatish Balay 471a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 472ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 473ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 474a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 475a30f8f8cSSatish Balay 476d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4771e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 478a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4791e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 480a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4811e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 482a30f8f8cSSatish Balay PetscFunctionReturn(0); 483a30f8f8cSSatish Balay } 484a30f8f8cSSatish Balay 4854a2ae208SSatish Balay #undef __FUNCT__ 4864a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 487dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 488a30f8f8cSSatish Balay { 489a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 490a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 4916849ba73SBarry Smith PetscErrorCode ierr; 49213f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 493e44c0bd4SBarry Smith PetscInt *row,*col; 494ace3abfcSBarry Smith PetscBool other_disassembled; 49513f74950SBarry Smith PetscMPIInt n; 496ace3abfcSBarry Smith PetscBool r1,r2,r3; 497a30f8f8cSSatish Balay MatScalar *val; 498a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 499a30f8f8cSSatish Balay 50091c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 501a30f8f8cSSatish Balay PetscFunctionBegin; 5024cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 503a30f8f8cSSatish Balay while (1) { 504a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 505a30f8f8cSSatish Balay if (!flg) break; 506a30f8f8cSSatish Balay 507a30f8f8cSSatish Balay for (i=0; i<n;) { 508a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 50926fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 51026fbe8dcSKarl Rupp if (row[j] != rstart) break; 51126fbe8dcSKarl Rupp } 512a30f8f8cSSatish Balay if (j < n) ncols = j-i; 513a30f8f8cSSatish Balay else ncols = n-i; 514a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 515dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 516a30f8f8cSSatish Balay i = j; 517a30f8f8cSSatish Balay } 518a30f8f8cSSatish Balay } 519a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 520a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 521a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 522a30f8f8cSSatish Balay restore the original flags */ 523a30f8f8cSSatish Balay r1 = baij->roworiented; 524a30f8f8cSSatish Balay r2 = a->roworiented; 52591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 52626fbe8dcSKarl Rupp 527a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 528a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 52926fbe8dcSKarl Rupp 53091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 531a30f8f8cSSatish Balay while (1) { 532a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 533a30f8f8cSSatish Balay if (!flg) break; 534a30f8f8cSSatish Balay 535a30f8f8cSSatish Balay for (i=0; i<n;) { 536a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 53726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 53826fbe8dcSKarl Rupp if (row[j] != rstart) break; 53926fbe8dcSKarl Rupp } 540a30f8f8cSSatish Balay if (j < n) ncols = j-i; 541a30f8f8cSSatish Balay else ncols = n-i; 542dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 543a30f8f8cSSatish Balay i = j; 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay } 546a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 54726fbe8dcSKarl Rupp 548a30f8f8cSSatish Balay baij->roworiented = r1; 549a30f8f8cSSatish Balay a->roworiented = r2; 55026fbe8dcSKarl Rupp 55191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 552a30f8f8cSSatish Balay } 553a30f8f8cSSatish Balay 554a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 555a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 556a30f8f8cSSatish Balay 557a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 558a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 559a30f8f8cSSatish Balay /* 560a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 561a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 562a30f8f8cSSatish Balay */ 563a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 564ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 565a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 566ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay 570a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 57140781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay 57674ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 57726fbe8dcSKarl Rupp 578a30f8f8cSSatish Balay baij->rowvalues = 0; 5794f9cfa9eSBarry Smith 5804f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 5814f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 582e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 58309e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 584e56f5c9eSBarry Smith } 585a30f8f8cSSatish Balay PetscFunctionReturn(0); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay 5887da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 589dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 5909804daf3SBarry Smith #include <petscdraw.h> 5914a2ae208SSatish Balay #undef __FUNCT__ 5924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 5936849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 594a30f8f8cSSatish Balay { 595a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 596dfbe8321SBarry Smith PetscErrorCode ierr; 597d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 5987da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 599ace3abfcSBarry Smith PetscBool iascii,isdraw; 600b0a32e0cSBarry Smith PetscViewer sviewer; 601f3ef73ceSBarry Smith PetscViewerFormat format; 602a30f8f8cSSatish Balay 603a30f8f8cSSatish Balay PetscFunctionBegin; 604251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 605251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 60632077d6dSBarry Smith if (iascii) { 607b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 608456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 609a30f8f8cSSatish Balay MatInfo info; 610ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 611a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6127b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6137b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 614a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 615e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 616a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 617e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 618b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6197b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 62007d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 621a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 622a30f8f8cSSatish Balay PetscFunctionReturn(0); 623fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 62477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 625a30f8f8cSSatish Balay PetscFunctionReturn(0); 626c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 627c1490034SHong Zhang PetscFunctionReturn(0); 628a30f8f8cSSatish Balay } 629a30f8f8cSSatish Balay } 630a30f8f8cSSatish Balay 631a30f8f8cSSatish Balay if (isdraw) { 632b0a32e0cSBarry Smith PetscDraw draw; 633ace3abfcSBarry Smith PetscBool isnull; 634b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 635b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 636a30f8f8cSSatish Balay } 637a30f8f8cSSatish Balay 6387da1fb6eSBarry Smith { 639a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 640a30f8f8cSSatish Balay Mat A; 64165d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 64265d70643SHong Zhang Mat_SeqBAIJ *Bloc; 643d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 644a30f8f8cSSatish Balay MatScalar *a; 6453e219373SBarry Smith const char *matname; 646a30f8f8cSSatish Balay 647f204ca49SKris Buschelman /* Should this be the same type as mat? */ 648ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 649a30f8f8cSSatish Balay if (!rank) { 650f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 651a30f8f8cSSatish Balay } else { 652f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 653a30f8f8cSSatish Balay } 654f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6550298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6562b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6573bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 658a30f8f8cSSatish Balay 659a30f8f8cSSatish Balay /* copy over the A part */ 66065d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 661a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 662785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 663a30f8f8cSSatish Balay 664a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 665e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 66626fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 667a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 668e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 669a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 670dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 67126fbe8dcSKarl Rupp col++; 67226fbe8dcSKarl Rupp a += bs; 673a30f8f8cSSatish Balay } 674a30f8f8cSSatish Balay } 675a30f8f8cSSatish Balay } 676a30f8f8cSSatish Balay /* copy over the B part */ 67765d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 67865d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 679a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 680e9f7bc9eSHong Zhang 681e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 68226fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 683a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 684a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 685a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 686799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 68726fbe8dcSKarl Rupp col++; 68826fbe8dcSKarl Rupp a += bs; 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay } 691a30f8f8cSSatish Balay } 692a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 693a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 694a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 695a30f8f8cSSatish Balay /* 696a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 697b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 698a30f8f8cSSatish Balay */ 699b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 700ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 7013e219373SBarry Smith if (!rank) { 702ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 7037da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 704a30f8f8cSSatish Balay } 705b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7066bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 707a30f8f8cSSatish Balay } 708a30f8f8cSSatish Balay PetscFunctionReturn(0); 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay 7114a2ae208SSatish Balay #undef __FUNCT__ 7124a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 713dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 714a30f8f8cSSatish Balay { 715dfbe8321SBarry Smith PetscErrorCode ierr; 716ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 717a30f8f8cSSatish Balay 718a30f8f8cSSatish Balay PetscFunctionBegin; 719251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 720251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 721251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 722251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 72332077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 724a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 725a30f8f8cSSatish Balay } 726a30f8f8cSSatish Balay PetscFunctionReturn(0); 727a30f8f8cSSatish Balay } 728a30f8f8cSSatish Balay 7294a2ae208SSatish Balay #undef __FUNCT__ 7304a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 731dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 732a30f8f8cSSatish Balay { 733a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 734dfbe8321SBarry Smith PetscErrorCode ierr; 735a30f8f8cSSatish Balay 736a30f8f8cSSatish Balay PetscFunctionBegin; 737a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 738d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 739a30f8f8cSSatish Balay #endif 740a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 741a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7426bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7436bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 744a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7456bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 746a30f8f8cSSatish Balay #else 74705b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 748a30f8f8cSSatish Balay #endif 74905b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7506bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7516bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7526bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7536bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7546bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7556bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7566bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7576bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7585755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 75905b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 76005b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7616bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7626bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7636bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 764ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 76505b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 766a30f8f8cSSatish Balay #endif 76759ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 76859ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 769899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 770bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 771901853e0SKris Buschelman 772dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 773bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 774bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 775bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 776bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 777bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 778a30f8f8cSSatish Balay PetscFunctionReturn(0); 779a30f8f8cSSatish Balay } 780a30f8f8cSSatish Balay 7814a2ae208SSatish Balay #undef __FUNCT__ 782547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 783547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 784547795f9SHong Zhang { 785547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 786547795f9SHong Zhang PetscErrorCode ierr; 787547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 788547795f9SHong Zhang PetscScalar *x,*from; 789547795f9SHong Zhang 790547795f9SHong Zhang PetscFunctionBegin; 791547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 792e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 793547795f9SHong Zhang 794547795f9SHong Zhang /* diagonal part */ 795547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 796547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 797547795f9SHong Zhang 798547795f9SHong Zhang /* subdiagonal part */ 799547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 800547795f9SHong Zhang 801547795f9SHong Zhang /* copy x into the vec slvec0 */ 802547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 803547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 804547795f9SHong Zhang 805547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 806547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 807547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 808547795f9SHong Zhang 809547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 810547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 811547795f9SHong Zhang /* supperdiagonal part */ 812547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 813547795f9SHong Zhang PetscFunctionReturn(0); 814547795f9SHong Zhang } 815547795f9SHong Zhang 816547795f9SHong Zhang #undef __FUNCT__ 817a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 818dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 819a9d4b620SHong Zhang { 820a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 821dfbe8321SBarry Smith PetscErrorCode ierr; 822d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 823fa22f6d0SBarry Smith PetscScalar *x,*from; 824a9d4b620SHong Zhang 825a9d4b620SHong Zhang PetscFunctionBegin; 826a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 827e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 828a9d4b620SHong Zhang 829a9d4b620SHong Zhang /* diagonal part */ 830a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 831fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 832a9d4b620SHong Zhang 833a9d4b620SHong Zhang /* subdiagonal part */ 834a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 835fc165ae2SBarry Smith 836a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8371ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8381ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 839a9d4b620SHong Zhang 840fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 841fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8421ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 843fc165ae2SBarry Smith 844fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 845ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 846a9d4b620SHong Zhang /* supperdiagonal part */ 847a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 848a9d4b620SHong Zhang PetscFunctionReturn(0); 849a9d4b620SHong Zhang } 850a9d4b620SHong Zhang 851a9d4b620SHong Zhang #undef __FUNCT__ 85240781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 853dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 854a30f8f8cSSatish Balay { 855a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 856dfbe8321SBarry Smith PetscErrorCode ierr; 8571302d50aSBarry Smith PetscInt nt; 858a30f8f8cSSatish Balay 859a30f8f8cSSatish Balay PetscFunctionBegin; 860a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 861e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 862e7e72b3dSBarry Smith 863a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 864e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 86565d70643SHong Zhang 866ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 867b941877fSHong Zhang /* do diagonal part */ 868b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 869b941877fSHong Zhang /* do supperdiagonal part */ 870ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 871b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 872b941877fSHong Zhang /* do subdiagonal part */ 873b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 874ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 875ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 876a30f8f8cSSatish Balay PetscFunctionReturn(0); 877a30f8f8cSSatish Balay } 878a30f8f8cSSatish Balay 8794a2ae208SSatish Balay #undef __FUNCT__ 8804a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 881dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 882a30f8f8cSSatish Balay { 883de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 884dfbe8321SBarry Smith PetscErrorCode ierr; 885d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 886a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 887a9d4b620SHong Zhang 888a9d4b620SHong Zhang PetscFunctionBegin; 889a9d4b620SHong Zhang /* 890ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 8910ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 892a9d4b620SHong Zhang */ 893a9d4b620SHong Zhang /* diagonal part */ 894a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 8952dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 896a9d4b620SHong Zhang 897a9d4b620SHong Zhang /* subdiagonal part */ 898a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 899a9d4b620SHong Zhang 900a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9011ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9021ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 903a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9041ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 905a9d4b620SHong Zhang 906ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9071ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 908ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 909a9d4b620SHong Zhang 910a9d4b620SHong Zhang /* supperdiagonal part */ 911a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 912a9d4b620SHong Zhang PetscFunctionReturn(0); 913a9d4b620SHong Zhang } 914a9d4b620SHong Zhang 915a9d4b620SHong Zhang #undef __FUNCT__ 916a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 917dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 918a9d4b620SHong Zhang { 919a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 920dfbe8321SBarry Smith PetscErrorCode ierr; 921a30f8f8cSSatish Balay 922a30f8f8cSSatish Balay PetscFunctionBegin; 923ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 924b941877fSHong Zhang /* do diagonal part */ 925b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 926b941877fSHong Zhang /* do supperdiagonal part */ 927ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 928de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 929de8b6608SHong Zhang 930b941877fSHong Zhang /* do subdiagonal part */ 931a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 932ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 933ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 934a30f8f8cSSatish Balay PetscFunctionReturn(0); 935a30f8f8cSSatish Balay } 936a30f8f8cSSatish Balay 937a30f8f8cSSatish Balay /* 938a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 939a30f8f8cSSatish Balay diagonal block 940a30f8f8cSSatish Balay */ 9414a2ae208SSatish Balay #undef __FUNCT__ 9424a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 943dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 944a30f8f8cSSatish Balay { 945a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 946dfbe8321SBarry Smith PetscErrorCode ierr; 947a30f8f8cSSatish Balay 948a30f8f8cSSatish Balay PetscFunctionBegin; 949e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 950a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 951a30f8f8cSSatish Balay PetscFunctionReturn(0); 952a30f8f8cSSatish Balay } 953a30f8f8cSSatish Balay 9544a2ae208SSatish Balay #undef __FUNCT__ 9554a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 956f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 957a30f8f8cSSatish Balay { 958a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 959dfbe8321SBarry Smith PetscErrorCode ierr; 960a30f8f8cSSatish Balay 961a30f8f8cSSatish Balay PetscFunctionBegin; 962f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 963f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 964a30f8f8cSSatish Balay PetscFunctionReturn(0); 965a30f8f8cSSatish Balay } 966a30f8f8cSSatish Balay 9674a2ae208SSatish Balay #undef __FUNCT__ 9684a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9691302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 970a30f8f8cSSatish Balay { 971d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 972d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 973d0d4cfc2SHong Zhang PetscErrorCode ierr; 974d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 975d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 976899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 977d0d4cfc2SHong Zhang 978a30f8f8cSSatish Balay PetscFunctionBegin; 979e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 980d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 981d0d4cfc2SHong Zhang 982d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 983d0d4cfc2SHong Zhang /* 984d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 985d0d4cfc2SHong Zhang */ 986d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 987d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 988d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 989d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 990d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 99126fbe8dcSKarl Rupp if (max < tmp) max = tmp; 992d0d4cfc2SHong Zhang } 993dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 994d0d4cfc2SHong Zhang } 995d0d4cfc2SHong Zhang 996e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 997d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 998d0d4cfc2SHong Zhang 999d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1000d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1001d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1002d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1003d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1004d0d4cfc2SHong Zhang nztot = nzA + nzB; 1005d0d4cfc2SHong Zhang 1006d0d4cfc2SHong Zhang cmap = mat->garray; 1007d0d4cfc2SHong Zhang if (v || idx) { 1008d0d4cfc2SHong Zhang if (nztot) { 1009d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1010d0d4cfc2SHong Zhang PetscInt imark = -1; 1011d0d4cfc2SHong Zhang if (v) { 1012d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1013d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1014d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1015d0d4cfc2SHong Zhang else break; 1016d0d4cfc2SHong Zhang } 1017d0d4cfc2SHong Zhang imark = i; 1018d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1019d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1020d0d4cfc2SHong Zhang } 1021d0d4cfc2SHong Zhang if (idx) { 1022d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1023d0d4cfc2SHong Zhang if (imark > -1) { 1024d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1025d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1026d0d4cfc2SHong Zhang } 1027d0d4cfc2SHong Zhang } else { 1028d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 102926fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1030d0d4cfc2SHong Zhang else break; 1031d0d4cfc2SHong Zhang } 1032d0d4cfc2SHong Zhang imark = i; 1033d0d4cfc2SHong Zhang } 1034d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1035d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1036d0d4cfc2SHong Zhang } 1037d0d4cfc2SHong Zhang } else { 1038d0d4cfc2SHong Zhang if (idx) *idx = 0; 1039d0d4cfc2SHong Zhang if (v) *v = 0; 1040d0d4cfc2SHong Zhang } 1041d0d4cfc2SHong Zhang } 1042d0d4cfc2SHong Zhang *nz = nztot; 1043d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1044d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1045a30f8f8cSSatish Balay PetscFunctionReturn(0); 1046a30f8f8cSSatish Balay } 1047a30f8f8cSSatish Balay 10484a2ae208SSatish Balay #undef __FUNCT__ 10494a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10501302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1051a30f8f8cSSatish Balay { 1052a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1053a30f8f8cSSatish Balay 1054a30f8f8cSSatish Balay PetscFunctionBegin; 1055e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1056a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1057a30f8f8cSSatish Balay PetscFunctionReturn(0); 1058a30f8f8cSSatish Balay } 1059a30f8f8cSSatish Balay 10604a2ae208SSatish Balay #undef __FUNCT__ 1061d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1062d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1063d0d4cfc2SHong Zhang { 1064d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1065d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1066d0d4cfc2SHong Zhang 1067d0d4cfc2SHong Zhang PetscFunctionBegin; 1068d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1069d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1070d0d4cfc2SHong Zhang } 1071d0d4cfc2SHong Zhang #undef __FUNCT__ 1072d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1073d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1074d0d4cfc2SHong Zhang { 1075d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1076d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1077d0d4cfc2SHong Zhang 1078d0d4cfc2SHong Zhang PetscFunctionBegin; 1079d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1080d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1081d0d4cfc2SHong Zhang } 1082d0d4cfc2SHong Zhang 1083d0d4cfc2SHong Zhang #undef __FUNCT__ 108499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 108599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 108699cafbc1SBarry Smith { 108799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 108899cafbc1SBarry Smith PetscErrorCode ierr; 108999cafbc1SBarry Smith 109099cafbc1SBarry Smith PetscFunctionBegin; 109199cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 109299cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 109399cafbc1SBarry Smith PetscFunctionReturn(0); 109499cafbc1SBarry Smith } 109599cafbc1SBarry Smith 109699cafbc1SBarry Smith #undef __FUNCT__ 109799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 109899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 109999cafbc1SBarry Smith { 110099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110199cafbc1SBarry Smith PetscErrorCode ierr; 110299cafbc1SBarry Smith 110399cafbc1SBarry Smith PetscFunctionBegin; 110499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 110599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 110699cafbc1SBarry Smith PetscFunctionReturn(0); 110799cafbc1SBarry Smith } 110899cafbc1SBarry Smith 110999cafbc1SBarry Smith #undef __FUNCT__ 11104a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1111dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1112a30f8f8cSSatish Balay { 1113a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1114dfbe8321SBarry Smith PetscErrorCode ierr; 1115a30f8f8cSSatish Balay 1116a30f8f8cSSatish Balay PetscFunctionBegin; 1117a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1118a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1119a30f8f8cSSatish Balay PetscFunctionReturn(0); 1120a30f8f8cSSatish Balay } 1121a30f8f8cSSatish Balay 11224a2ae208SSatish Balay #undef __FUNCT__ 11234a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1124dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1125a30f8f8cSSatish Balay { 1126a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1127a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1128dfbe8321SBarry Smith PetscErrorCode ierr; 1129a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1130a30f8f8cSSatish Balay 1131a30f8f8cSSatish Balay PetscFunctionBegin; 1132d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 113326fbe8dcSKarl Rupp 1134a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 113526fbe8dcSKarl Rupp 1136a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1137a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 113826fbe8dcSKarl Rupp 1139a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 114026fbe8dcSKarl Rupp 1141a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1142a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1143a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1144a30f8f8cSSatish Balay info->nz_used = isend[0]; 1145a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1146a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1147a30f8f8cSSatish Balay info->memory = isend[3]; 1148a30f8f8cSSatish Balay info->mallocs = isend[4]; 1149a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1150ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 115126fbe8dcSKarl Rupp 1152a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1153a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1154a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1155a30f8f8cSSatish Balay info->memory = irecv[3]; 1156a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1157a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1158ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 115926fbe8dcSKarl Rupp 1160a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1161a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1162a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1163a30f8f8cSSatish Balay info->memory = irecv[3]; 1164a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1165f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1166a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1167a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1168a30f8f8cSSatish Balay info->factor_mallocs = 0; 1169a30f8f8cSSatish Balay PetscFunctionReturn(0); 1170a30f8f8cSSatish Balay } 1171a30f8f8cSSatish Balay 11724a2ae208SSatish Balay #undef __FUNCT__ 11734a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1174ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1175a30f8f8cSSatish Balay { 1176a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1177d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1178dfbe8321SBarry Smith PetscErrorCode ierr; 1179a30f8f8cSSatish Balay 1180a30f8f8cSSatish Balay PetscFunctionBegin; 1181e98b92d7SKris Buschelman switch (op) { 1182512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1183e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 118428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1185a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1186e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 11874e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 11884e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1189e98b92d7SKris Buschelman break; 1190e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 11914e0d8c25SBarry Smith a->roworiented = flg; 119226fbe8dcSKarl Rupp 11934e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 11944e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1195e98b92d7SKris Buschelman break; 11964e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1197290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1198e98b92d7SKris Buschelman break; 1199e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12004e0d8c25SBarry Smith a->donotstash = flg; 1201e98b92d7SKris Buschelman break; 1202e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12034e0d8c25SBarry Smith a->ht_flag = flg; 1204e98b92d7SKris Buschelman break; 12059a4540c5SBarry Smith case MAT_HERMITIAN: 1206e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1207eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 120826fbe8dcSKarl Rupp 1209547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1210eeffb40dSHong Zhang break; 1211ffa07934SHong Zhang case MAT_SPD: 1212ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1213ffa07934SHong Zhang A->spd = flg; 1214ffa07934SHong Zhang if (flg) { 1215ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1216ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1217ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1218ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1219ffa07934SHong Zhang } 1220ffa07934SHong Zhang break; 122177e54ba9SKris Buschelman case MAT_SYMMETRIC: 1222eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1223eeffb40dSHong Zhang break; 122477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1225eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1226eeffb40dSHong Zhang break; 12279a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1228e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1229290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 123077e54ba9SKris Buschelman break; 1231d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12324e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1233d0d4cfc2SHong Zhang break; 1234d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12354e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1236d0d4cfc2SHong Zhang break; 1237d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12384e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1239d0d4cfc2SHong Zhang break; 1240e98b92d7SKris Buschelman default: 1241e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1242a30f8f8cSSatish Balay } 1243a30f8f8cSSatish Balay PetscFunctionReturn(0); 1244a30f8f8cSSatish Balay } 1245a30f8f8cSSatish Balay 12464a2ae208SSatish Balay #undef __FUNCT__ 12478115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1248fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1249a30f8f8cSSatish Balay { 1250dfbe8321SBarry Smith PetscErrorCode ierr; 12516e111a19SKarl Rupp 1252a30f8f8cSSatish Balay PetscFunctionBegin; 1253815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1254999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1255fc4dec0aSBarry Smith } 12568115998fSBarry Smith PetscFunctionReturn(0); 1257a30f8f8cSSatish Balay } 1258a30f8f8cSSatish Balay 12594a2ae208SSatish Balay #undef __FUNCT__ 12604a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1261dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1262a30f8f8cSSatish Balay { 1263a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1264a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1265dfbe8321SBarry Smith PetscErrorCode ierr; 12665e90f9d9SHong Zhang PetscInt nv,m,n; 1267ace3abfcSBarry Smith PetscBool flg; 1268a30f8f8cSSatish Balay 1269a30f8f8cSSatish Balay PetscFunctionBegin; 1270a30f8f8cSSatish Balay if (ll != rr) { 1271b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1272e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1273a30f8f8cSSatish Balay } 1274b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1275b3bf805bSHong Zhang 12765e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1277e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1278b3bf805bSHong Zhang 12795e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1280e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12815e90f9d9SHong Zhang 1282ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12835e90f9d9SHong Zhang 12845e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 12850298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 12865e90f9d9SHong Zhang 12875e90f9d9SHong Zhang /* scale the diagonal part */ 1288a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1289a30f8f8cSSatish Balay 12905e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1291ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12920298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1293a30f8f8cSSatish Balay PetscFunctionReturn(0); 1294a30f8f8cSSatish Balay } 1295a30f8f8cSSatish Balay 12964a2ae208SSatish Balay #undef __FUNCT__ 12974a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1298dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1299a30f8f8cSSatish Balay { 1300f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1301dfbe8321SBarry Smith PetscErrorCode ierr; 1302a30f8f8cSSatish Balay 1303a30f8f8cSSatish Balay PetscFunctionBegin; 1304a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay PetscFunctionReturn(0); 1306a30f8f8cSSatish Balay } 1307a30f8f8cSSatish Balay 13086849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1309a30f8f8cSSatish Balay 13104a2ae208SSatish Balay #undef __FUNCT__ 13114a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1312ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1313a30f8f8cSSatish Balay { 1314a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1315a30f8f8cSSatish Balay Mat a,b,c,d; 1316ace3abfcSBarry Smith PetscBool flg; 1317dfbe8321SBarry Smith PetscErrorCode ierr; 1318a30f8f8cSSatish Balay 1319a30f8f8cSSatish Balay PetscFunctionBegin; 1320a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1321a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1322a30f8f8cSSatish Balay 1323a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1324abc0a331SBarry Smith if (flg) { 1325a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1326a30f8f8cSSatish Balay } 1327ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1328a30f8f8cSSatish Balay PetscFunctionReturn(0); 1329a30f8f8cSSatish Balay } 1330a30f8f8cSSatish Balay 13314a2ae208SSatish Balay #undef __FUNCT__ 13323c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13333c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13343c896bc6SHong Zhang { 13353c896bc6SHong Zhang PetscErrorCode ierr; 13363c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 13373c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 13383c896bc6SHong Zhang 13393c896bc6SHong Zhang PetscFunctionBegin; 13403c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13413c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1342d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13433c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1344d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13453c896bc6SHong Zhang } else { 13463c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13473c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13483c896bc6SHong Zhang } 13493c896bc6SHong Zhang PetscFunctionReturn(0); 13503c896bc6SHong Zhang } 13513c896bc6SHong Zhang 13523c896bc6SHong Zhang #undef __FUNCT__ 13534994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 13544994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1355273d9f13SBarry Smith { 1356dfbe8321SBarry Smith PetscErrorCode ierr; 1357273d9f13SBarry Smith 1358273d9f13SBarry Smith PetscFunctionBegin; 1359535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1360273d9f13SBarry Smith PetscFunctionReturn(0); 1361273d9f13SBarry Smith } 1362a5e6ed63SBarry Smith 13634fe895cdSHong Zhang #undef __FUNCT__ 13644fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13654fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13664fe895cdSHong Zhang { 13674fe895cdSHong Zhang PetscErrorCode ierr; 13684fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 13694fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13704fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13714fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13724fe895cdSHong Zhang 13734fe895cdSHong Zhang PetscFunctionBegin; 13744fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13754fe895cdSHong Zhang PetscScalar alpha = a; 13764fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 13774fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1378c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 13798b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 13804fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 13814fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1382c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 13838b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1384a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 13854fe895cdSHong Zhang } else { 13864de5dceeSHong Zhang Mat B; 13874de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 13884de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1389d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13904de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 13914de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 13924de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 13934de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 13944de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 13954de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 13964de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 13974de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 13984de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 13994de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 14004de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 14014de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 14024de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 14034de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 14044de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1405d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14064de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 14074fe895cdSHong Zhang } 14084fe895cdSHong Zhang PetscFunctionReturn(0); 14094fe895cdSHong Zhang } 14104fe895cdSHong Zhang 1411a5e6ed63SBarry Smith #undef __FUNCT__ 1412a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14131302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1414a5e6ed63SBarry Smith { 14156849ba73SBarry Smith PetscErrorCode ierr; 14161302d50aSBarry Smith PetscInt i; 1417ace3abfcSBarry Smith PetscBool flg; 1418a5e6ed63SBarry Smith 14196849ba73SBarry Smith PetscFunctionBegin; 1420a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1421a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1422e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1423a5e6ed63SBarry Smith } 1424a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1425a5e6ed63SBarry Smith PetscFunctionReturn(0); 1426a5e6ed63SBarry Smith } 1427a5e6ed63SBarry Smith 1428a5e6ed63SBarry Smith 1429a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 14303964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1431a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1432a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1433a9d4b620SHong Zhang MatMult_MPISBAIJ, 143497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1435431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1436431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1437a30f8f8cSSatish Balay 0, 1438a30f8f8cSSatish Balay 0, 1439a30f8f8cSSatish Balay 0, 144097304618SKris Buschelman /* 10*/ 0, 1441a30f8f8cSSatish Balay 0, 1442a30f8f8cSSatish Balay 0, 144341f059aeSBarry Smith MatSOR_MPISBAIJ, 1444a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 144597304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1446a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1447a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1448a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1449a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 145097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1451a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1452a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1453a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1454d519adbfSMatthew Knepley /* 24*/ 0, 1455a30f8f8cSSatish Balay 0, 1456a30f8f8cSSatish Balay 0, 1457a30f8f8cSSatish Balay 0, 1458a30f8f8cSSatish Balay 0, 14594994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1460b5df2d14SHong Zhang 0, 1461a30f8f8cSSatish Balay 0, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 1464d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1465a30f8f8cSSatish Balay 0, 1466a30f8f8cSSatish Balay 0, 1467a30f8f8cSSatish Balay 0, 1468a30f8f8cSSatish Balay 0, 1469d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1470a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1471d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1472a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14733c896bc6SHong Zhang MatCopy_MPISBAIJ, 1474d519adbfSMatthew Knepley /* 44*/ 0, 1475a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1476a30f8f8cSSatish Balay 0, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479f73d5cc4SBarry Smith /* 49*/ 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484d519adbfSMatthew Knepley /* 54*/ 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1487a30f8f8cSSatish Balay 0, 1488a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1489d519adbfSMatthew Knepley /* 59*/ 0, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 1492357abbc8SBarry Smith 0, 149324d5174aSHong Zhang 0, 1494d519adbfSMatthew Knepley /* 64*/ 0, 149524d5174aSHong Zhang 0, 149624d5174aSHong Zhang 0, 149724d5174aSHong Zhang 0, 149824d5174aSHong Zhang 0, 1499d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 150024d5174aSHong Zhang 0, 150197304618SKris Buschelman 0, 150297304618SKris Buschelman 0, 150397304618SKris Buschelman 0, 1504d519adbfSMatthew Knepley /* 74*/ 0, 150597304618SKris Buschelman 0, 150697304618SKris Buschelman 0, 150797304618SKris Buschelman 0, 150897304618SKris Buschelman 0, 1509d519adbfSMatthew Knepley /* 79*/ 0, 151097304618SKris Buschelman 0, 151197304618SKris Buschelman 0, 151297304618SKris Buschelman 0, 15135bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1514d519adbfSMatthew Knepley /* 84*/ 0, 1515865e5f61SKris Buschelman 0, 1516865e5f61SKris Buschelman 0, 1517865e5f61SKris Buschelman 0, 1518865e5f61SKris Buschelman 0, 1519d519adbfSMatthew Knepley /* 89*/ 0, 1520865e5f61SKris Buschelman 0, 1521865e5f61SKris Buschelman 0, 1522865e5f61SKris Buschelman 0, 1523865e5f61SKris Buschelman 0, 1524d519adbfSMatthew Knepley /* 94*/ 0, 1525865e5f61SKris Buschelman 0, 1526865e5f61SKris Buschelman 0, 152799cafbc1SBarry Smith 0, 152899cafbc1SBarry Smith 0, 1529d519adbfSMatthew Knepley /* 99*/ 0, 153099cafbc1SBarry Smith 0, 153199cafbc1SBarry Smith 0, 153299cafbc1SBarry Smith 0, 153399cafbc1SBarry Smith 0, 1534d519adbfSMatthew Knepley /*104*/ 0, 153599cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1536d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1537d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 153895936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 153995936485SShri Abhyankar /*109*/ 0, 154095936485SShri Abhyankar 0, 154195936485SShri Abhyankar 0, 154295936485SShri Abhyankar 0, 154395936485SShri Abhyankar 0, 154495936485SShri Abhyankar /*114*/ 0, 154595936485SShri Abhyankar 0, 154695936485SShri Abhyankar 0, 154795936485SShri Abhyankar 0, 154895936485SShri Abhyankar 0, 154995936485SShri Abhyankar /*119*/ 0, 155095936485SShri Abhyankar 0, 155195936485SShri Abhyankar 0, 15523964eb88SJed Brown 0, 15533964eb88SJed Brown 0, 15543964eb88SJed Brown /*124*/ 0, 15553964eb88SJed Brown 0, 15563964eb88SJed Brown 0, 15573964eb88SJed Brown 0, 15583964eb88SJed Brown 0, 15593964eb88SJed Brown /*129*/ 0, 15603964eb88SJed Brown 0, 15613964eb88SJed Brown 0, 15623964eb88SJed Brown 0, 15633964eb88SJed Brown 0, 15643964eb88SJed Brown /*134*/ 0, 15653964eb88SJed Brown 0, 15663964eb88SJed Brown 0, 15673964eb88SJed Brown 0, 15683964eb88SJed Brown 0, 15693964eb88SJed Brown /*139*/ 0, 1570f9426fe0SMark Adams 0, 15715bba2384SShri Abhyankar 0 157299cafbc1SBarry Smith }; 1573a30f8f8cSSatish Balay 1574a30f8f8cSSatish Balay 15754a2ae208SSatish Balay #undef __FUNCT__ 15764a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 157711bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1578a30f8f8cSSatish Balay { 1579a30f8f8cSSatish Balay PetscFunctionBegin; 1580a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1581a30f8f8cSSatish Balay PetscFunctionReturn(0); 1582a30f8f8cSSatish Balay } 1583a30f8f8cSSatish Balay 15844a2ae208SSatish Balay #undef __FUNCT__ 1585a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1586b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1587a23d5eceSKris Buschelman { 1588a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1589dfbe8321SBarry Smith PetscErrorCode ierr; 1590535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1591a23d5eceSKris Buschelman 1592a23d5eceSKris Buschelman PetscFunctionBegin; 159333d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 159426283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 159526283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1596e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1597899cda47SBarry Smith 1598a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1599d0f46423SBarry Smith mbs = B->rmap->n/bs; 1600d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1601c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1602a23d5eceSKris Buschelman 1603d0f46423SBarry Smith B->rmap->bs = bs; 1604a23d5eceSKris Buschelman b->bs2 = bs*bs; 1605a23d5eceSKris Buschelman b->mbs = mbs; 1606a23d5eceSKris Buschelman b->nbs = mbs; 1607a23d5eceSKris Buschelman b->Mbs = Mbs; 1608a23d5eceSKris Buschelman b->Nbs = Mbs; 1609a23d5eceSKris Buschelman 1610a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1611d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1612a23d5eceSKris Buschelman } 1613d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1614d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1615a23d5eceSKris Buschelman 1616d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1617d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1618a23d5eceSKris Buschelman 1619526dfc15SBarry Smith if (!B->preallocated) { 1620f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1621d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16229c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 16233bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1624f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1625d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16264aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 16273bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1628ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1629526dfc15SBarry Smith } 1630a23d5eceSKris Buschelman 1631526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1632526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 163326fbe8dcSKarl Rupp 1634526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1635a23d5eceSKris Buschelman PetscFunctionReturn(0); 1636a23d5eceSKris Buschelman } 1637a23d5eceSKris Buschelman 1638dfb205c3SBarry Smith #undef __FUNCT__ 1639dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1640dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1641dfb205c3SBarry Smith { 1642dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1643dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1644dfb205c3SBarry Smith const PetscInt *JJ =0; 1645dfb205c3SBarry Smith PetscScalar *values=0; 1646dfb205c3SBarry Smith PetscErrorCode ierr; 1647dfb205c3SBarry Smith 1648dfb205c3SBarry Smith PetscFunctionBegin; 1649ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1650dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1651dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1652dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1653dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1654e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1655dfb205c3SBarry Smith m = B->rmap->n/bs; 1656dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1657dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1658dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1659dfb205c3SBarry Smith 1660dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1661dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1662dfb205c3SBarry Smith for (i=0; i<m; i++) { 1663dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1664dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1665dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1666dfb205c3SBarry Smith JJ = jj + ii[i]; 1667dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1668dfb205c3SBarry Smith if (*JJ >= cstart) break; 1669dfb205c3SBarry Smith JJ++; 1670dfb205c3SBarry Smith } 1671dfb205c3SBarry Smith d = 0; 1672dfb205c3SBarry Smith for (; j<nz; j++) { 1673dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1674dfb205c3SBarry Smith d++; 1675dfb205c3SBarry Smith } 1676dfb205c3SBarry Smith d_nnz[i] = d; 1677dfb205c3SBarry Smith o_nnz[i] = nz - d; 1678dfb205c3SBarry Smith } 1679dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1680dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1681dfb205c3SBarry Smith 1682dfb205c3SBarry Smith values = (PetscScalar*)V; 1683dfb205c3SBarry Smith if (!values) { 1684785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1685dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1686dfb205c3SBarry Smith } 1687dfb205c3SBarry Smith for (i=0; i<m; i++) { 1688dfb205c3SBarry Smith PetscInt row = i + rstart; 1689dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1690dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1691dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1692dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1693dfb205c3SBarry Smith } 1694dfb205c3SBarry Smith 1695dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1696dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1697dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16987827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1699dfb205c3SBarry Smith PetscFunctionReturn(0); 1700dfb205c3SBarry Smith } 1701dfb205c3SBarry Smith 1702611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 17038cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1704611f576cSBarry Smith #endif 1705b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 17068cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1707b5e56a35SBarry Smith #endif 17085c9eb25fSBarry Smith 17090bad9183SKris Buschelman /*MC 1710fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1711828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1712828413b8SBarry Smith the matrix is stored. 1713828413b8SBarry Smith 1714828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1715828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17160bad9183SKris Buschelman 17170bad9183SKris Buschelman Options Database Keys: 17180bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17190bad9183SKris Buschelman 17200bad9183SKris Buschelman Level: beginner 17210bad9183SKris Buschelman 17220bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17230bad9183SKris Buschelman M*/ 17240bad9183SKris Buschelman 17258cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1726aa5a9175SDahai Guo 1727a23d5eceSKris Buschelman #undef __FUNCT__ 17284a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17298cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1730b5df2d14SHong Zhang { 1731b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1732dfbe8321SBarry Smith PetscErrorCode ierr; 1733ace3abfcSBarry Smith PetscBool flg; 1734b5df2d14SHong Zhang 1735b5df2d14SHong Zhang PetscFunctionBegin; 1736b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1737b0a32e0cSBarry Smith B->data = (void*)b; 1738b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1739b5df2d14SHong Zhang 1740b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1741b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1742b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1743b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 174426fbe8dcSKarl Rupp 1745ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1746ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1747b5df2d14SHong Zhang 1748b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1749785e854fSJed Brown ierr = PetscMalloc1((b->size+2),&b->rangebs);CHKERRQ(ierr); 1750b5df2d14SHong Zhang 1751b5df2d14SHong Zhang /* build cache for off array entries formed */ 1752ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 175326fbe8dcSKarl Rupp 1754b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 17550298fd71SBarry Smith b->colmap = NULL; 17560298fd71SBarry Smith b->garray = NULL; 1757b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1758b5df2d14SHong Zhang 1759b5df2d14SHong Zhang /* stuff used in block assembly */ 1760b5df2d14SHong Zhang b->barray = 0; 1761b5df2d14SHong Zhang 1762b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1763b5df2d14SHong Zhang b->lvec = 0; 1764b5df2d14SHong Zhang b->Mvctx = 0; 176540781036SHong Zhang b->slvec0 = 0; 176640781036SHong Zhang b->slvec0b = 0; 176740781036SHong Zhang b->slvec1 = 0; 176840781036SHong Zhang b->slvec1a = 0; 176940781036SHong Zhang b->slvec1b = 0; 177040781036SHong Zhang b->sMvctx = 0; 1771b5df2d14SHong Zhang 1772b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1773b5df2d14SHong Zhang b->rowindices = 0; 1774b5df2d14SHong Zhang b->rowvalues = 0; 1775b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1776b5df2d14SHong Zhang 1777b5df2d14SHong Zhang /* hash table stuff */ 1778b5df2d14SHong Zhang b->ht = 0; 1779b5df2d14SHong Zhang b->hd = 0; 1780b5df2d14SHong Zhang b->ht_size = 0; 1781b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1782b5df2d14SHong Zhang b->ht_fact = 0; 1783b5df2d14SHong Zhang b->ht_total_ct = 0; 1784b5df2d14SHong Zhang b->ht_insert_ct = 0; 1785b5df2d14SHong Zhang 17867a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 17877a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 17887a868f3eSHong Zhang 178959ffdab8SBarry Smith b->in_loc = 0; 179059ffdab8SBarry Smith b->v_loc = 0; 179159ffdab8SBarry Smith b->n_loc = 0; 1792ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17930298fd71SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr); 1794b5df2d14SHong Zhang if (flg) { 1795f6275e2eSBarry Smith PetscReal fact = 1.39; 17964e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17970298fd71SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 1798b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1799b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 18001e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1801b5df2d14SHong Zhang } 18028c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 18038c07d4e3SBarry Smith 1804b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1805bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1806b5e56a35SBarry Smith #endif 1807611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1808bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1809611f576cSBarry Smith #endif 1810bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1811bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1812bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1813bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1814bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1815bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1816aa5a9175SDahai Guo 181723ce1328SBarry Smith B->symmetric = PETSC_TRUE; 181823ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 181923ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 182023ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 182126fbe8dcSKarl Rupp 182217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1823b5df2d14SHong Zhang PetscFunctionReturn(0); 1824b5df2d14SHong Zhang } 1825b5df2d14SHong Zhang 1826209238afSKris Buschelman /*MC 1827002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1828209238afSKris Buschelman 1829209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1830209238afSKris Buschelman and MATMPISBAIJ otherwise. 1831209238afSKris Buschelman 1832209238afSKris Buschelman Options Database Keys: 1833209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1834209238afSKris Buschelman 1835209238afSKris Buschelman Level: beginner 1836209238afSKris Buschelman 1837209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1838209238afSKris Buschelman M*/ 1839209238afSKris Buschelman 18404a2ae208SSatish Balay #undef __FUNCT__ 18414a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1842b5df2d14SHong Zhang /*@C 1843b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1844b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1845b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1846b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang Collective on Mat 1849b5df2d14SHong Zhang 1850b5df2d14SHong Zhang Input Parameters: 18511c4f3114SJed Brown + B - the matrix 1852b5df2d14SHong Zhang . bs - size of blockk 1853b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1854b5df2d14SHong Zhang submatrix (same for all local rows) 1855b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18566d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18570298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 185895742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1859b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1860b5df2d14SHong Zhang submatrix (same for all local rows). 1861b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1862c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 18630298fd71SBarry Smith (possibly different for each block row) or NULL. 1864b5df2d14SHong Zhang 1865b5df2d14SHong Zhang 1866b5df2d14SHong Zhang Options Database Keys: 1867b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1868b5df2d14SHong Zhang block calculations (much slower) 1869b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1870b5df2d14SHong Zhang 1871b5df2d14SHong Zhang Notes: 1872b5df2d14SHong Zhang 1873b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1874b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1875b5df2d14SHong Zhang 187649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187749a6f317SBarry Smith 1878b5df2d14SHong Zhang Storage Information: 1879b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1880b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1881b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1882b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1883b5df2d14SHong Zhang 1884b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1885b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 18860298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1887b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1888b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1889b5df2d14SHong Zhang 1890aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1891aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1892aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1893aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1894aa95bbe8SBarry Smith 1895b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1896b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1897b5df2d14SHong Zhang 1898b5df2d14SHong Zhang .vb 1899b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1900a4b1a0f6SJed Brown -------------------------- 1901c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 1902c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 1903c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 1904a4b1a0f6SJed Brown -------------------------- 1905b5df2d14SHong Zhang .ve 1906b5df2d14SHong Zhang 1907b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1908b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19096d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19106d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1911b5df2d14SHong Zhang 19126d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19136d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1914c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1915c2fc9fa9SBarry Smith 1916b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1917b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1918b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1919b5df2d14SHong Zhang matrices. 1920b5df2d14SHong Zhang 1921b5df2d14SHong Zhang Level: intermediate 1922b5df2d14SHong Zhang 1923b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1924b5df2d14SHong Zhang 1925ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 1926b5df2d14SHong Zhang @*/ 19277087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1928b5df2d14SHong Zhang { 19294ac538c5SBarry Smith PetscErrorCode ierr; 1930b5df2d14SHong Zhang 1931b5df2d14SHong Zhang PetscFunctionBegin; 19326ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19336ba663aaSJed Brown PetscValidType(B,1); 19346ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19354ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1936b5df2d14SHong Zhang PetscFunctionReturn(0); 1937b5df2d14SHong Zhang } 1938b5df2d14SHong Zhang 19394a2ae208SSatish Balay #undef __FUNCT__ 194069b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 1941a30f8f8cSSatish Balay /*@C 194269b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1943a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1944a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1945a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1946a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1947a30f8f8cSSatish Balay 1948a30f8f8cSSatish Balay Collective on MPI_Comm 1949a30f8f8cSSatish Balay 1950a30f8f8cSSatish Balay Input Parameters: 1951a30f8f8cSSatish Balay + comm - MPI communicator 1952a30f8f8cSSatish Balay . bs - size of blockk 1953a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1954a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1955a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1956a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1957a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1958a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1959a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1960a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1961a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1962a30f8f8cSSatish Balay submatrix (same for all local rows) 1963a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19646d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19650298fd71SBarry Smith (possibly different for each block block row) or NULL. 196695742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 196795742e49SBarry Smith set its value even if it is zero. 1968a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1969a30f8f8cSSatish Balay submatrix (same for all local rows). 1970a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1971a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 19720298fd71SBarry Smith each block row) or NULL. 1973a30f8f8cSSatish Balay 1974a30f8f8cSSatish Balay Output Parameter: 1975a30f8f8cSSatish Balay . A - the matrix 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay Options Database Keys: 1978a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1979a30f8f8cSSatish Balay block calculations (much slower) 1980a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1981a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1982a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1983a30f8f8cSSatish Balay 1984175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1985ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1986175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1987175b88e8SBarry Smith 1988a30f8f8cSSatish Balay Notes: 1989d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19906d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1991d1be2dadSMatthew Knepley 1992a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1993a30f8f8cSSatish Balay (possibly both). 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1996a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1997a30f8f8cSSatish Balay 199849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 199949a6f317SBarry Smith 2000a30f8f8cSSatish Balay Storage Information: 2001a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2002a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2003a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2004a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2005a30f8f8cSSatish Balay 2006a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2007a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 20080298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2009a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2010a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2011a30f8f8cSSatish Balay 2012a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2013a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2014a30f8f8cSSatish Balay 2015a30f8f8cSSatish Balay .vb 2016a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2017a4b1a0f6SJed Brown -------------------------- 2018c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2019c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2020c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2021a4b1a0f6SJed Brown -------------------------- 2022a30f8f8cSSatish Balay .ve 2023a30f8f8cSSatish Balay 2024a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2025a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20266d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20276d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2028a30f8f8cSSatish Balay 20296d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20306d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2031a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2032a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2033a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2034a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2035a30f8f8cSSatish Balay matrices. 2036a30f8f8cSSatish Balay 2037a30f8f8cSSatish Balay Level: intermediate 2038a30f8f8cSSatish Balay 2039a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2040a30f8f8cSSatish Balay 204169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2042a30f8f8cSSatish Balay @*/ 2043a30f8f8cSSatish Balay 204469b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2045a30f8f8cSSatish Balay { 20466849ba73SBarry Smith PetscErrorCode ierr; 20471302d50aSBarry Smith PetscMPIInt size; 2048a30f8f8cSSatish Balay 2049a30f8f8cSSatish Balay PetscFunctionBegin; 2050f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2051f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2052273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2053273d9f13SBarry Smith if (size > 1) { 2054b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2055b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2056273d9f13SBarry Smith } else { 2057273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2058273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2059273d9f13SBarry Smith } 2060a30f8f8cSSatish Balay PetscFunctionReturn(0); 2061a30f8f8cSSatish Balay } 2062a30f8f8cSSatish Balay 2063a30f8f8cSSatish Balay 20644a2ae208SSatish Balay #undef __FUNCT__ 20654a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20666849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2067a30f8f8cSSatish Balay { 2068a30f8f8cSSatish Balay Mat mat; 2069a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2070dfbe8321SBarry Smith PetscErrorCode ierr; 2071d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2072387bc808SHong Zhang PetscScalar *array; 2073a30f8f8cSSatish Balay 2074a30f8f8cSSatish Balay PetscFunctionBegin; 2075a30f8f8cSSatish Balay *newmat = 0; 207626fbe8dcSKarl Rupp 2077ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2078d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20797adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20801d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 20811e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 20821e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2083e1b6402fSHong Zhang 2084d5f3da31SBarry Smith mat->factortype = matin->factortype; 2085273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 208682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20877fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20887fff6886SHong Zhang 2089b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2090a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2091a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2092a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2093a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2094a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2095a30f8f8cSSatish Balay 2096899cda47SBarry Smith 2097a30f8f8cSSatish Balay a->size = oldmat->size; 2098a30f8f8cSSatish Balay a->rank = oldmat->rank; 2099a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2100a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2101a30f8f8cSSatish Balay a->rowindices = 0; 2102a30f8f8cSSatish Balay a->rowvalues = 0; 2103a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2104a30f8f8cSSatish Balay a->barray = 0; 2105899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2106899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2107899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2108899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2109a30f8f8cSSatish Balay 2110a30f8f8cSSatish Balay /* hash table stuff */ 2111a30f8f8cSSatish Balay a->ht = 0; 2112a30f8f8cSSatish Balay a->hd = 0; 2113a30f8f8cSSatish Balay a->ht_size = 0; 2114a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2115a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2116a30f8f8cSSatish Balay a->ht_total_ct = 0; 2117a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2118a30f8f8cSSatish Balay 2119899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2120a30f8f8cSSatish Balay if (oldmat->colmap) { 2121a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2122a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2123a30f8f8cSSatish Balay #else 2124785e854fSJed Brown ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr); 21253bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21261302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2127a30f8f8cSSatish Balay #endif 2128a30f8f8cSSatish Balay } else a->colmap = 0; 2129387bc808SHong Zhang 2130a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2131785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 21323bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21331302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2134a30f8f8cSSatish Balay } else a->garray = 0; 2135a30f8f8cSSatish Balay 2136ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2137a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 21383bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2139a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 21403bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 214182327fa8SHong Zhang 214282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 21433bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 214482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 21453bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2146387bc808SHong Zhang 2147387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21481ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2149778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2150778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21511ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21521ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2153778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21541ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 21553bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 21563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 21573bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 21583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 21593bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2160387bc808SHong Zhang 2161387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2162387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2163387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 21643bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 216582327fa8SHong Zhang 2166a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 21673bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2168a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 21693bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2170140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2171a30f8f8cSSatish Balay *newmat = mat; 2172a30f8f8cSSatish Balay PetscFunctionReturn(0); 2173a30f8f8cSSatish Balay } 2174a30f8f8cSSatish Balay 21754a2ae208SSatish Balay #undef __FUNCT__ 21765bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2177112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 217895936485SShri Abhyankar { 217995936485SShri Abhyankar PetscErrorCode ierr; 218095936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 218195936485SShri Abhyankar PetscScalar *vals,*buf; 2182ce94432eSBarry Smith MPI_Comm comm; 218395936485SShri Abhyankar MPI_Status status; 2184adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2185adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 218695936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21873059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 218895936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2189*461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 219095936485SShri Abhyankar int fd; 219195936485SShri Abhyankar 219295936485SShri Abhyankar PetscFunctionBegin; 2193ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 21940298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21950298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 219695936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 21973059b6faSBarry Smith if (bs < 0) bs = 1; 219895936485SShri Abhyankar 219995936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 220095936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 220195936485SShri Abhyankar if (!rank) { 220295936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 220395936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 220495936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 220595936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 220695936485SShri Abhyankar } 220795936485SShri Abhyankar 220895936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 220926fbe8dcSKarl Rupp M = header[1]; 221026fbe8dcSKarl Rupp N = header[2]; 221195936485SShri Abhyankar 221295936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2213*461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2214*461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 221595936485SShri Abhyankar 221695936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 221795936485SShri Abhyankar 221895936485SShri Abhyankar /* 221995936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 222095936485SShri Abhyankar divisible by the blocksize 222195936485SShri Abhyankar */ 222295936485SShri Abhyankar Mbs = M/bs; 222395936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 222495936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 222595936485SShri Abhyankar else Mbs++; 222695936485SShri Abhyankar if (extra_rows &&!rank) { 222795936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 222895936485SShri Abhyankar } 222995936485SShri Abhyankar 223095936485SShri Abhyankar /* determine ownership of all rows */ 223195936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 223295936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 223395936485SShri Abhyankar m = mbs*bs; 223495936485SShri Abhyankar } else { /* User Set */ 223595936485SShri Abhyankar m = newmat->rmap->n; 223695936485SShri Abhyankar mbs = m/bs; 223795936485SShri Abhyankar } 2238dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 22394dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 224095936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 224195936485SShri Abhyankar rowners[0] = 0; 224295936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 224395936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 224495936485SShri Abhyankar rstart = rowners[rank]; 224595936485SShri Abhyankar rend = rowners[rank+1]; 224695936485SShri Abhyankar 224795936485SShri Abhyankar /* distribute row lengths to all processors */ 2248785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 224995936485SShri Abhyankar if (!rank) { 2250785e854fSJed Brown ierr = PetscMalloc1((M+extra_rows),&rowlengths);CHKERRQ(ierr); 225195936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 225295936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2253785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 225495936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 225595936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 225695936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 225795936485SShri Abhyankar } else { 225895936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 225995936485SShri Abhyankar } 226095936485SShri Abhyankar 226195936485SShri Abhyankar if (!rank) { /* procs[0] */ 226295936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2263785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 226495936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 226595936485SShri Abhyankar for (i=0; i<size; i++) { 226695936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 226795936485SShri Abhyankar procsnz[i] += rowlengths[j]; 226895936485SShri Abhyankar } 226995936485SShri Abhyankar } 227095936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 227195936485SShri Abhyankar 227295936485SShri Abhyankar /* determine max buffer needed and allocate it */ 227395936485SShri Abhyankar maxnz = 0; 227495936485SShri Abhyankar for (i=0; i<size; i++) { 227595936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 227695936485SShri Abhyankar } 2277785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 227895936485SShri Abhyankar 227995936485SShri Abhyankar /* read in my part of the matrix column indices */ 228095936485SShri Abhyankar nz = procsnz[0]; 2281785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 228295936485SShri Abhyankar mycols = ibuf; 228395936485SShri Abhyankar if (size == 1) nz -= extra_rows; 228495936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 228526fbe8dcSKarl Rupp if (size == 1) { 228626fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 228726fbe8dcSKarl Rupp } 228895936485SShri Abhyankar 228995936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 229095936485SShri Abhyankar for (i=1; i<size-1; i++) { 229195936485SShri Abhyankar nz = procsnz[i]; 229295936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 229395936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 229495936485SShri Abhyankar } 229595936485SShri Abhyankar /* read in the stuff for the last proc */ 229695936485SShri Abhyankar if (size != 1) { 229795936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 229895936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 229995936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 230095936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 230195936485SShri Abhyankar } 230295936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 230395936485SShri Abhyankar } else { /* procs[i], i>0 */ 230495936485SShri Abhyankar /* determine buffer space needed for message */ 230595936485SShri Abhyankar nz = 0; 230626fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2307785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 230895936485SShri Abhyankar mycols = ibuf; 230995936485SShri Abhyankar /* receive message of column indices*/ 231095936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 231195936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 231295936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 231395936485SShri Abhyankar } 231495936485SShri Abhyankar 231595936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2316dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2317dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 231895936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 231995936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232095936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232195936485SShri Abhyankar rowcount = 0; 232295936485SShri Abhyankar nzcount = 0; 232395936485SShri Abhyankar for (i=0; i<mbs; i++) { 232495936485SShri Abhyankar dcount = 0; 232595936485SShri Abhyankar odcount = 0; 232695936485SShri Abhyankar for (j=0; j<bs; j++) { 232795936485SShri Abhyankar kmax = locrowlens[rowcount]; 232895936485SShri Abhyankar for (k=0; k<kmax; k++) { 232995936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 233095936485SShri Abhyankar if (!mask[tmp]) { 233195936485SShri Abhyankar mask[tmp] = 1; 233295936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 233395936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 233495936485SShri Abhyankar } 233595936485SShri Abhyankar } 233695936485SShri Abhyankar rowcount++; 233795936485SShri Abhyankar } 233895936485SShri Abhyankar 233995936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 234095936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 234195936485SShri Abhyankar 234295936485SShri Abhyankar /* zero out the mask elements we set */ 234395936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 234495936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 234595936485SShri Abhyankar } 234695936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 234795936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 23486816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 234995936485SShri Abhyankar 235095936485SShri Abhyankar if (!rank) { 2351785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 235295936485SShri Abhyankar /* read in my part of the matrix numerical values */ 235395936485SShri Abhyankar nz = procsnz[0]; 235495936485SShri Abhyankar vals = buf; 235595936485SShri Abhyankar mycols = ibuf; 235695936485SShri Abhyankar if (size == 1) nz -= extra_rows; 235795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 235826fbe8dcSKarl Rupp if (size == 1) { 235926fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 236026fbe8dcSKarl Rupp } 236195936485SShri Abhyankar 236295936485SShri Abhyankar /* insert into matrix */ 236395936485SShri Abhyankar jj = rstart*bs; 236495936485SShri Abhyankar for (i=0; i<m; i++) { 236595936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 236695936485SShri Abhyankar mycols += locrowlens[i]; 236795936485SShri Abhyankar vals += locrowlens[i]; 236895936485SShri Abhyankar jj++; 236995936485SShri Abhyankar } 237095936485SShri Abhyankar 237195936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 237295936485SShri Abhyankar for (i=1; i<size-1; i++) { 237395936485SShri Abhyankar nz = procsnz[i]; 237495936485SShri Abhyankar vals = buf; 237595936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 237695936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 237795936485SShri Abhyankar } 237895936485SShri Abhyankar /* the last proc */ 237995936485SShri Abhyankar if (size != 1) { 238095936485SShri Abhyankar nz = procsnz[i] - extra_rows; 238195936485SShri Abhyankar vals = buf; 238295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238395936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 238495936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 238595936485SShri Abhyankar } 238695936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 238795936485SShri Abhyankar 238895936485SShri Abhyankar } else { 238995936485SShri Abhyankar /* receive numeric values */ 2390785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 239195936485SShri Abhyankar 239295936485SShri Abhyankar /* receive message of values*/ 239395936485SShri Abhyankar vals = buf; 239495936485SShri Abhyankar mycols = ibuf; 239595936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 239695936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 239795936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 239895936485SShri Abhyankar 239995936485SShri Abhyankar /* insert into matrix */ 240095936485SShri Abhyankar jj = rstart*bs; 240195936485SShri Abhyankar for (i=0; i<m; i++) { 240295936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 240395936485SShri Abhyankar mycols += locrowlens[i]; 240495936485SShri Abhyankar vals += locrowlens[i]; 240595936485SShri Abhyankar jj++; 240695936485SShri Abhyankar } 240795936485SShri Abhyankar } 240895936485SShri Abhyankar 240995936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 241095936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 241195936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 241295936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 241395936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 241495936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 241595936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 241695936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 241795936485SShri Abhyankar PetscFunctionReturn(0); 241895936485SShri Abhyankar } 241995936485SShri Abhyankar 242095936485SShri Abhyankar #undef __FUNCT__ 24214a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2422dcf5cc72SBarry Smith /*XXXXX@ 2423a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2424a30f8f8cSSatish Balay 2425a30f8f8cSSatish Balay Input Parameters: 2426a30f8f8cSSatish Balay . mat - the matrix 2427a30f8f8cSSatish Balay . fact - factor 2428a30f8f8cSSatish Balay 2429c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2430a30f8f8cSSatish Balay 2431a30f8f8cSSatish Balay Level: advanced 2432a30f8f8cSSatish Balay 2433a30f8f8cSSatish Balay Notes: 2434a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2435a30f8f8cSSatish Balay 2436a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2437a30f8f8cSSatish Balay 2438a30f8f8cSSatish Balay .seealso: MatSetOption() 2439dcf5cc72SBarry Smith @XXXXX*/ 2440dcf5cc72SBarry Smith 244124d5174aSHong Zhang 24424a2ae208SSatish Balay #undef __FUNCT__ 2443985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2444985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 244524d5174aSHong Zhang { 244624d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2447f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2448ca54ac64SHong Zhang PetscReal atmp; 244987828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2450dfbe8321SBarry Smith PetscErrorCode ierr; 24511302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24521302d50aSBarry Smith PetscMPIInt rank,size; 24531302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 245487828ca2SBarry Smith PetscScalar *va; 24558a1c53f2SBarry Smith MatScalar *ba; 2456f4c0e9e4SHong Zhang MPI_Status stat; 245724d5174aSHong Zhang 245824d5174aSHong Zhang PetscFunctionBegin; 2459e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 24600298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 24611ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2462f4c0e9e4SHong Zhang 2463ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2464ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2465f4c0e9e4SHong Zhang 2466d0f46423SBarry Smith bs = A->rmap->bs; 2467f4c0e9e4SHong Zhang mbs = a->mbs; 2468f4c0e9e4SHong Zhang Mbs = a->Mbs; 2469f4c0e9e4SHong Zhang ba = b->a; 2470f4c0e9e4SHong Zhang bi = b->i; 2471f4c0e9e4SHong Zhang bj = b->j; 2472f4c0e9e4SHong Zhang 2473f4c0e9e4SHong Zhang /* find ownerships */ 2474d0f46423SBarry Smith rowners_bs = A->rmap->range; 2475f4c0e9e4SHong Zhang 2476f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2477785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2478ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2479f4c0e9e4SHong Zhang 2480f4c0e9e4SHong Zhang /* row_max for B */ 2481b8475685SHong Zhang if (rank != size-1) { 2482f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2483f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2484f4c0e9e4SHong Zhang brow = bs*i; 2485f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2486f4c0e9e4SHong Zhang bcol = bs*(*bj); 2487f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2488ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 248904d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2490f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2491f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2492ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2493ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2494f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2495f4c0e9e4SHong Zhang } 2496f4c0e9e4SHong Zhang } 2497f4c0e9e4SHong Zhang bj++; 2498f4c0e9e4SHong Zhang } 2499f4c0e9e4SHong Zhang } 2500f4c0e9e4SHong Zhang 2501f4c0e9e4SHong Zhang /* send values to its owners */ 2502f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2503f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2504ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2505ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2506ca54ac64SHong Zhang } 2507f4c0e9e4SHong Zhang } 2508f4c0e9e4SHong Zhang 2509f4c0e9e4SHong Zhang /* receive values */ 2510ca54ac64SHong Zhang if (rank) { 2511f4c0e9e4SHong Zhang rvalues = work; 2512ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2513f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2514ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2515f4c0e9e4SHong Zhang /* process values */ 2516f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2517ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2518f4c0e9e4SHong Zhang } 2519f4c0e9e4SHong Zhang } 2520ca54ac64SHong Zhang } 2521f4c0e9e4SHong Zhang 25221ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2523ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 252424d5174aSHong Zhang PetscFunctionReturn(0); 252524d5174aSHong Zhang } 25262798e883SHong Zhang 25272798e883SHong Zhang #undef __FUNCT__ 252841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 252941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25302798e883SHong Zhang { 25312798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2532dfbe8321SBarry Smith PetscErrorCode ierr; 2533d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25343649974fSBarry Smith PetscScalar *x,*ptr,*from; 2535ffe4fb16SHong Zhang Vec bb1; 25363649974fSBarry Smith const PetscScalar *b; 2537ffe4fb16SHong Zhang 2538ffe4fb16SHong Zhang PetscFunctionBegin; 2539e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2540e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2541ffe4fb16SHong Zhang 2542a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 254341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2544a2b30743SBarry Smith PetscFunctionReturn(0); 2545a2b30743SBarry Smith } 2546a2b30743SBarry Smith 2547ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2548ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 254941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2550ffe4fb16SHong Zhang its--; 2551ffe4fb16SHong Zhang } 2552ffe4fb16SHong Zhang 2553ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2554ffe4fb16SHong Zhang while (its--) { 2555ffe4fb16SHong Zhang 2556ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2557ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2558ffe4fb16SHong Zhang 2559ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25601ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25611ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2562ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25631ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2564ffe4fb16SHong Zhang 2565efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2566ffe4fb16SHong Zhang 2567ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25681ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25693649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2570ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25711ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2572ffe4fb16SHong Zhang 2573ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2574fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2575ffe4fb16SHong Zhang 2576ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25771ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2578a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2579ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2580ffe4fb16SHong Zhang 2581ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2582ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2583ffe4fb16SHong Zhang 2584ffe4fb16SHong Zhang /* local diagonal sweep */ 258541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2586ffe4fb16SHong Zhang } 25876bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2588fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 258941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2590fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 259141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2592fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2593fa22f6d0SBarry Smith Vec xx1; 2594ace3abfcSBarry Smith PetscBool hasop; 259520f1ed55SBarry Smith const PetscScalar *diag; 2596887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 259720f1ed55SBarry Smith PetscInt i,n; 2598fa22f6d0SBarry Smith 2599fa22f6d0SBarry Smith if (!mat->xx1) { 2600fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2601fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2602fa22f6d0SBarry Smith } 2603fa22f6d0SBarry Smith xx1 = mat->xx1; 2604fa22f6d0SBarry Smith bb1 = mat->bb1; 2605fa22f6d0SBarry Smith 260641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2607fa22f6d0SBarry Smith 2608fa22f6d0SBarry Smith if (!mat->diag) { 2609effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26100298fd71SBarry Smith ierr = MatGetVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2611fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2612fa22f6d0SBarry Smith } 2613fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2614fa22f6d0SBarry Smith 2615fa22f6d0SBarry Smith if (hasop) { 2616fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2617887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 261820f1ed55SBarry Smith } else { 261920f1ed55SBarry Smith /* 262020f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 262120f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2622887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 262320f1ed55SBarry Smith */ 262420f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26253649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26263649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 262720f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 262820f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2629887ee2caSBarry Smith if (omega == 1.0) { 263026fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 263120f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2632887ee2caSBarry Smith } else { 263326fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2634887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2635887ee2caSBarry Smith } 263620f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26373649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26383649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 263920f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 264020f1ed55SBarry Smith } 2641fa22f6d0SBarry Smith 2642fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2643fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2644fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2645fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2646fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2647fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2648fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2649fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2650fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2651fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2652effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2653fa22f6d0SBarry Smith 2654fa22f6d0SBarry Smith /* local sweep */ 265541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2656fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2657f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2658ffe4fb16SHong Zhang PetscFunctionReturn(0); 2659ffe4fb16SHong Zhang } 2660ffe4fb16SHong Zhang 2661ffe4fb16SHong Zhang #undef __FUNCT__ 266241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 266341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2664ffe4fb16SHong Zhang { 2665ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2666dfbe8321SBarry Smith PetscErrorCode ierr; 26672798e883SHong Zhang Vec lvec1,bb1; 26682798e883SHong Zhang 26692798e883SHong Zhang PetscFunctionBegin; 2670e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2671e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26722798e883SHong Zhang 2673c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 26742798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 267541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26762798e883SHong Zhang its--; 26772798e883SHong Zhang } 26782798e883SHong Zhang 26792798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26802798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26812798e883SHong Zhang while (its--) { 2682ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26832798e883SHong Zhang 26842798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26852798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2686efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26872798e883SHong Zhang 2688ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26892798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2690ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26912798e883SHong Zhang 26922798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2693efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26942798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26952798e883SHong Zhang 2696ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26972798e883SHong Zhang 2698c14dc6b6SHong Zhang /* diagonal sweep */ 269941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27002798e883SHong Zhang } 27016bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27026bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27036bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27042798e883SHong Zhang PetscFunctionReturn(0); 27052798e883SHong Zhang } 27062798e883SHong Zhang 2707dfb205c3SBarry Smith #undef __FUNCT__ 2708dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2709dfb205c3SBarry Smith /*@ 2710dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2711dfb205c3SBarry Smith CSR format the local rows. 2712dfb205c3SBarry Smith 2713dfb205c3SBarry Smith Collective on MPI_Comm 2714dfb205c3SBarry Smith 2715dfb205c3SBarry Smith Input Parameters: 2716dfb205c3SBarry Smith + comm - MPI communicator 2717dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2718dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2719dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2720dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2721dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2722dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2723dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2724dfb205c3SBarry Smith . i - row indices 2725dfb205c3SBarry Smith . j - column indices 2726dfb205c3SBarry Smith - a - matrix values 2727dfb205c3SBarry Smith 2728dfb205c3SBarry Smith Output Parameter: 2729dfb205c3SBarry Smith . mat - the matrix 2730dfb205c3SBarry Smith 2731dfb205c3SBarry Smith Level: intermediate 2732dfb205c3SBarry Smith 2733dfb205c3SBarry Smith Notes: 2734dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2735dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2736dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2737dfb205c3SBarry Smith 2738dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2739dfb205c3SBarry Smith 2740dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2741dfb205c3SBarry Smith 2742dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 274369b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2744dfb205c3SBarry Smith @*/ 27457087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2746dfb205c3SBarry Smith { 2747dfb205c3SBarry Smith PetscErrorCode ierr; 2748dfb205c3SBarry Smith 2749dfb205c3SBarry Smith 2750dfb205c3SBarry Smith PetscFunctionBegin; 2751f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2752dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2753dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2754dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2755dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2756dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2757dfb205c3SBarry Smith PetscFunctionReturn(0); 2758dfb205c3SBarry Smith } 2759dfb205c3SBarry Smith 2760dfb205c3SBarry Smith 2761dfb205c3SBarry Smith #undef __FUNCT__ 2762dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2763dfb205c3SBarry Smith /*@C 2764dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2765dfb205c3SBarry Smith (the default parallel PETSc format). 2766dfb205c3SBarry Smith 2767dfb205c3SBarry Smith Collective on MPI_Comm 2768dfb205c3SBarry Smith 2769dfb205c3SBarry Smith Input Parameters: 27701c4f3114SJed Brown + B - the matrix 2771dfb205c3SBarry Smith . bs - the block size 2772dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2773dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2774dfb205c3SBarry Smith - v - optional values in the matrix 2775dfb205c3SBarry Smith 2776dfb205c3SBarry Smith Level: developer 2777dfb205c3SBarry Smith 2778dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2779dfb205c3SBarry Smith 278069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2781dfb205c3SBarry Smith @*/ 27827087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2783dfb205c3SBarry Smith { 27844ac538c5SBarry Smith PetscErrorCode ierr; 2785dfb205c3SBarry Smith 2786dfb205c3SBarry Smith PetscFunctionBegin; 27874ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2788dfb205c3SBarry Smith PetscFunctionReturn(0); 2789dfb205c3SBarry Smith } 2790dfb205c3SBarry Smith 2791dfb205c3SBarry Smith 2792