xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 461878b29a91ee2f8c912b31b68f4de725324203)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
74a2ae208SSatish Balay #undef __FUNCT__
84a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
97087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
10a30f8f8cSSatish Balay {
11f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
12dfbe8321SBarry Smith   PetscErrorCode ierr;
13a30f8f8cSSatish Balay 
14a30f8f8cSSatish Balay   PetscFunctionBegin;
15a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
16a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
17a30f8f8cSSatish Balay   PetscFunctionReturn(0);
18a30f8f8cSSatish Balay }
19a30f8f8cSSatish Balay 
204a2ae208SSatish Balay #undef __FUNCT__
214a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
227087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
23a30f8f8cSSatish Balay {
24f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
25dfbe8321SBarry Smith   PetscErrorCode ierr;
26a30f8f8cSSatish Balay 
27a30f8f8cSSatish Balay   PetscFunctionBegin;
28a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
29a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
30a30f8f8cSSatish Balay   PetscFunctionReturn(0);
31a30f8f8cSSatish Balay }
32a30f8f8cSSatish Balay 
33a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
34a30f8f8cSSatish Balay   { \
35a30f8f8cSSatish Balay  \
36a30f8f8cSSatish Balay     brow = row/bs;  \
37a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
38a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
39a30f8f8cSSatish Balay     bcol = col/bs; \
40a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
41a30f8f8cSSatish Balay     low  = 0; high = nrow; \
42a30f8f8cSSatish Balay     while (high-low > 3) { \
43a30f8f8cSSatish Balay       t = (low+high)/2; \
44a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
45a30f8f8cSSatish Balay       else              low  = t; \
46a30f8f8cSSatish Balay     } \
47a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
48a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
49a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
50a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
51a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
52a30f8f8cSSatish Balay         else                    *bap  = value;  \
53a30f8f8cSSatish Balay         goto a_noinsert; \
54a30f8f8cSSatish Balay       } \
55a30f8f8cSSatish Balay     } \
56a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
57e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
58fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
59a30f8f8cSSatish Balay     N = nrow++ - 1;  \
60a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
61a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
62a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
63a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
64a30f8f8cSSatish Balay     } \
65a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
66a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
67a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
68e56f5c9eSBarry Smith     A->nonzerostate++;\
69a30f8f8cSSatish Balay a_noinsert:; \
70a30f8f8cSSatish Balay     ailen[brow] = nrow; \
71a30f8f8cSSatish Balay   }
72e5e170daSBarry Smith 
73a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
74a30f8f8cSSatish Balay   { \
75a30f8f8cSSatish Balay     brow = row/bs;  \
76a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
77a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
78a30f8f8cSSatish Balay     bcol = col/bs; \
79a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
80a30f8f8cSSatish Balay     low  = 0; high = nrow; \
81a30f8f8cSSatish Balay     while (high-low > 3) { \
82a30f8f8cSSatish Balay       t = (low+high)/2; \
83a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
84a30f8f8cSSatish Balay       else              low  = t; \
85a30f8f8cSSatish Balay     } \
86a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
87a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
88a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
89a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
90a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
91a30f8f8cSSatish Balay         else                    *bap  = value;  \
92a30f8f8cSSatish Balay         goto b_noinsert; \
93a30f8f8cSSatish Balay       } \
94a30f8f8cSSatish Balay     } \
95a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
96e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
97fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
98a30f8f8cSSatish Balay     N = nrow++ - 1;  \
99a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
100a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
101a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
102a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
103a30f8f8cSSatish Balay     } \
104a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
105a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
106a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
107e56f5c9eSBarry Smith     B->nonzerostate++;\
108a30f8f8cSSatish Balay b_noinsert:; \
109a30f8f8cSSatish Balay     bilen[brow] = nrow; \
110a30f8f8cSSatish Balay   }
111a30f8f8cSSatish Balay 
112a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
113a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
114a30f8f8cSSatish Balay */
1154a2ae208SSatish Balay #undef __FUNCT__
116dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
117dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
118a30f8f8cSSatish Balay {
119a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
120a30f8f8cSSatish Balay   MatScalar      value;
121ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
122dfbe8321SBarry Smith   PetscErrorCode ierr;
1231302d50aSBarry Smith   PetscInt       i,j,row,col;
124d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
125d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
126d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
127a30f8f8cSSatish Balay 
128a30f8f8cSSatish Balay   /* Some Variables required in the macro */
129a30f8f8cSSatish Balay   Mat          A     = baij->A;
130a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1311302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
132a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
133a30f8f8cSSatish Balay 
134a30f8f8cSSatish Balay   Mat         B     = baij->B;
135a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1361302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
137a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
138a30f8f8cSSatish Balay 
1391302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1401302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
141a30f8f8cSSatish Balay   MatScalar *ap,*bap;
142a30f8f8cSSatish Balay 
143a30f8f8cSSatish Balay   /* for stash */
1440298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1450298fd71SBarry Smith   MatScalar *v_loc = NULL;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   PetscFunctionBegin;
148a30f8f8cSSatish Balay   if (!baij->donotstash) {
14959ffdab8SBarry Smith     if (n > baij->n_loc) {
15059ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
15159ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
152785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
153785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15426fbe8dcSKarl Rupp 
15559ffdab8SBarry Smith       baij->n_loc = n;
15659ffdab8SBarry Smith     }
15759ffdab8SBarry Smith     in_loc = baij->in_loc;
15859ffdab8SBarry Smith     v_loc  = baij->v_loc;
159a30f8f8cSSatish Balay   }
160a30f8f8cSSatish Balay 
161a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
162a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1632515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
164e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
165a30f8f8cSSatish Balay #endif
166a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
167a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
168a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
16901b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
17001b2bd88SHong Zhang           if (a->ignore_ltriangular) {
17101b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
17226fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17301b2bd88SHong Zhang         }
174a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
175a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
176a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
177a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
178db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
179db4deed7SKarl Rupp           else             value = v[i+j*m];
180a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
181a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
182a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
184cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
185a30f8f8cSSatish Balay #endif
186a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
187a30f8f8cSSatish Balay           if (mat->was_assembled) {
188a30f8f8cSSatish Balay             if (!baij->colmap) {
189ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
190a30f8f8cSSatish Balay             }
191a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
192a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19371730473SSatish Balay             col  = col - 1;
194a30f8f8cSSatish Balay #else
19571730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
196a30f8f8cSSatish Balay #endif
197a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
198ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
199a30f8f8cSSatish Balay               col  =  in[j];
200a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
201a30f8f8cSSatish Balay               B    = baij->B;
202a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
203a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
204a30f8f8cSSatish Balay               ba   = b->a;
20571730473SSatish Balay             } else col += in[j]%bs;
206a30f8f8cSSatish Balay           } else col = in[j];
207db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
208db4deed7SKarl Rupp           else             value = v[i+j*m];
209a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
210a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
211a30f8f8cSSatish Balay         }
212a30f8f8cSSatish Balay       }
213a30f8f8cSSatish Balay     } else {  /* off processor entry */
2144cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
215a30f8f8cSSatish Balay       if (!baij->donotstash) {
2165080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
217a30f8f8cSSatish Balay         n_loc          = 0;
218a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
219f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
220a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
221a30f8f8cSSatish Balay           if (roworiented) {
222a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
223a30f8f8cSSatish Balay           } else {
224a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
225a30f8f8cSSatish Balay           }
226a30f8f8cSSatish Balay           n_loc++;
227a30f8f8cSSatish Balay         }
228b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
229a30f8f8cSSatish Balay       }
230a30f8f8cSSatish Balay     }
231a30f8f8cSSatish Balay   }
232a30f8f8cSSatish Balay   PetscFunctionReturn(0);
233a30f8f8cSSatish Balay }
234a30f8f8cSSatish Balay 
2354a2ae208SSatish Balay #undef __FUNCT__
236dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
237dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
238a30f8f8cSSatish Balay {
2390880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
240f15d580aSBarry Smith   const MatScalar *value;
241f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
242ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
243dfbe8321SBarry Smith   PetscErrorCode  ierr;
244899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
245899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
246d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2470880e062SHong Zhang 
248a30f8f8cSSatish Balay   PetscFunctionBegin;
2490880e062SHong Zhang   if (!barray) {
250785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
2510880e062SHong Zhang     baij->barray = barray;
2520880e062SHong Zhang   }
2530880e062SHong Zhang 
2540880e062SHong Zhang   if (roworiented) {
2550880e062SHong Zhang     stepval = (n-1)*bs;
2560880e062SHong Zhang   } else {
2570880e062SHong Zhang     stepval = (m-1)*bs;
2580880e062SHong Zhang   }
2590880e062SHong Zhang   for (i=0; i<m; i++) {
2600880e062SHong Zhang     if (im[i] < 0) continue;
2612515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
262e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2630880e062SHong Zhang #endif
2640880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2650880e062SHong Zhang       row = im[i] - rstart;
2660880e062SHong Zhang       for (j=0; j<n; j++) {
267f3f98c53SJed Brown         if (im[i] > in[j]) {
268f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
269e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
270f3f98c53SJed Brown         }
2710880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2720880e062SHong Zhang         if ((roworiented) && (n == 1)) {
273f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2740880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
275f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2760880e062SHong Zhang         } else { /* Here a copy is required */
2770880e062SHong Zhang           if (roworiented) {
2780880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2790880e062SHong Zhang           } else {
2800880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2810880e062SHong Zhang           }
2820880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2830880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2840880e062SHong Zhang               *barray++ = *value++;
2850880e062SHong Zhang             }
2860880e062SHong Zhang           }
2870880e062SHong Zhang           barray -=bs2;
2880880e062SHong Zhang         }
2890880e062SHong Zhang 
2900880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
2910880e062SHong Zhang           col  = in[j] - cstart;
2920880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
29326fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
2942515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
295cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
2960880e062SHong Zhang #endif
2970880e062SHong Zhang         else {
2980880e062SHong Zhang           if (mat->was_assembled) {
2990880e062SHong Zhang             if (!baij->colmap) {
300ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3010880e062SHong Zhang             }
3020880e062SHong Zhang 
3032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3040880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3051302d50aSBarry Smith             { PetscInt data;
3060880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
307e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3080880e062SHong Zhang             }
3090880e062SHong Zhang #else
310e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3110880e062SHong Zhang #endif
3120880e062SHong Zhang #endif
3130880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3140880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3150880e062SHong Zhang             col  = (col - 1)/bs;
3160880e062SHong Zhang #else
3170880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3180880e062SHong Zhang #endif
3190880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
320ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3210880e062SHong Zhang               col  = in[j];
3220880e062SHong Zhang             }
32326fbe8dcSKarl Rupp           } else col = in[j];
324e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3250880e062SHong Zhang         }
3260880e062SHong Zhang       }
3270880e062SHong Zhang     } else {
3284cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3290880e062SHong Zhang       if (!baij->donotstash) {
3300880e062SHong Zhang         if (roworiented) {
3310880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3320880e062SHong Zhang         } else {
3330880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3340880e062SHong Zhang         }
3350880e062SHong Zhang       }
3360880e062SHong Zhang     }
3370880e062SHong Zhang   }
3380880e062SHong Zhang   PetscFunctionReturn(0);
339a30f8f8cSSatish Balay }
340a30f8f8cSSatish Balay 
3414a2ae208SSatish Balay #undef __FUNCT__
3424a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3431302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
344a30f8f8cSSatish Balay {
345f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3466849ba73SBarry Smith   PetscErrorCode ierr;
347d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
348d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
349a30f8f8cSSatish Balay 
350a30f8f8cSSatish Balay   PetscFunctionBegin;
351a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
352e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
353e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
354a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
355a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
356a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
357e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
358e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
359a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
360a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
361c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
362a30f8f8cSSatish Balay         } else {
363a30f8f8cSSatish Balay           if (!baij->colmap) {
364ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
365a30f8f8cSSatish Balay           }
366a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
367a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
368a30f8f8cSSatish Balay           data--;
369a30f8f8cSSatish Balay #else
370a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
371a30f8f8cSSatish Balay #endif
372a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
373a30f8f8cSSatish Balay           else {
374a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
375e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
376a30f8f8cSSatish Balay           }
377a30f8f8cSSatish Balay         }
378a30f8f8cSSatish Balay       }
379f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
380a30f8f8cSSatish Balay   }
381a30f8f8cSSatish Balay   PetscFunctionReturn(0);
382a30f8f8cSSatish Balay }
383a30f8f8cSSatish Balay 
3844a2ae208SSatish Balay #undef __FUNCT__
3854a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
386dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
387a30f8f8cSSatish Balay {
388a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
389dfbe8321SBarry Smith   PetscErrorCode ierr;
390a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
391a30f8f8cSSatish Balay 
392a30f8f8cSSatish Balay   PetscFunctionBegin;
393a30f8f8cSSatish Balay   if (baij->size == 1) {
394a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
395a30f8f8cSSatish Balay   } else {
396a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
397785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
398a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
399a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
400a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
401a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
402ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4038f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
404a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
4050b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4060b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4070b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4080b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
409899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
410d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4110b8dc8d2SHong Zhang       MatScalar    *v;
4120b8dc8d2SHong Zhang 
413dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
414d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4150b8dc8d2SHong Zhang       /* Amat */
4160b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4170b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4180b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4190b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
4200b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4210b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4220b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4230b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4240b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4250b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4260b8dc8d2SHong Zhang               /* non-diagonal block */
4270b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4280b8dc8d2SHong Zhang             }
4290b8dc8d2SHong Zhang           }
4300b8dc8d2SHong Zhang         }
4310b8dc8d2SHong Zhang       }
4320b8dc8d2SHong Zhang       /* Bmat */
4330b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4340b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4350b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4360b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4370b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4380b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4390b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4400b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4410b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4420b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4430b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4440b8dc8d2SHong Zhang             }
4450b8dc8d2SHong Zhang           }
4460b8dc8d2SHong Zhang         }
4470b8dc8d2SHong Zhang       }
448ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4490b8dc8d2SHong Zhang       *norm = 0.0;
450d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4510b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4520b8dc8d2SHong Zhang       }
45374ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
454f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
455a30f8f8cSSatish Balay   }
456a30f8f8cSSatish Balay   PetscFunctionReturn(0);
457a30f8f8cSSatish Balay }
458a30f8f8cSSatish Balay 
4594a2ae208SSatish Balay #undef __FUNCT__
4604a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
461dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
462a30f8f8cSSatish Balay {
463a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
464dfbe8321SBarry Smith   PetscErrorCode ierr;
4651302d50aSBarry Smith   PetscInt       nstash,reallocs;
466a30f8f8cSSatish Balay   InsertMode     addv;
467a30f8f8cSSatish Balay 
468a30f8f8cSSatish Balay   PetscFunctionBegin;
46926fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
470a30f8f8cSSatish Balay 
471a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
472ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
473ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
474a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
475a30f8f8cSSatish Balay 
476d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
4771e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
478a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4791e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
480a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4811e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
482a30f8f8cSSatish Balay   PetscFunctionReturn(0);
483a30f8f8cSSatish Balay }
484a30f8f8cSSatish Balay 
4854a2ae208SSatish Balay #undef __FUNCT__
4864a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
487dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
488a30f8f8cSSatish Balay {
489a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
490a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
4916849ba73SBarry Smith   PetscErrorCode ierr;
49213f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
493e44c0bd4SBarry Smith   PetscInt       *row,*col;
494ace3abfcSBarry Smith   PetscBool      other_disassembled;
49513f74950SBarry Smith   PetscMPIInt    n;
496ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
497a30f8f8cSSatish Balay   MatScalar      *val;
498a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
499a30f8f8cSSatish Balay 
50091c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
501a30f8f8cSSatish Balay   PetscFunctionBegin;
5024cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
503a30f8f8cSSatish Balay     while (1) {
504a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
505a30f8f8cSSatish Balay       if (!flg) break;
506a30f8f8cSSatish Balay 
507a30f8f8cSSatish Balay       for (i=0; i<n;) {
508a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
50926fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
51026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
51126fbe8dcSKarl Rupp         }
512a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
513a30f8f8cSSatish Balay         else       ncols = n-i;
514a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
515dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
516a30f8f8cSSatish Balay         i    = j;
517a30f8f8cSSatish Balay       }
518a30f8f8cSSatish Balay     }
519a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
520a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
521a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
522a30f8f8cSSatish Balay        restore the original flags */
523a30f8f8cSSatish Balay     r1 = baij->roworiented;
524a30f8f8cSSatish Balay     r2 = a->roworiented;
52591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
52626fbe8dcSKarl Rupp 
527a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
528a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
52926fbe8dcSKarl Rupp 
53091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
531a30f8f8cSSatish Balay     while (1) {
532a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
533a30f8f8cSSatish Balay       if (!flg) break;
534a30f8f8cSSatish Balay 
535a30f8f8cSSatish Balay       for (i=0; i<n;) {
536a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
53726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
53826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
53926fbe8dcSKarl Rupp         }
540a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
541a30f8f8cSSatish Balay         else       ncols = n-i;
542dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
543a30f8f8cSSatish Balay         i    = j;
544a30f8f8cSSatish Balay       }
545a30f8f8cSSatish Balay     }
546a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
54726fbe8dcSKarl Rupp 
548a30f8f8cSSatish Balay     baij->roworiented = r1;
549a30f8f8cSSatish Balay     a->roworiented    = r2;
55026fbe8dcSKarl Rupp 
55191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
552a30f8f8cSSatish Balay   }
553a30f8f8cSSatish Balay 
554a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
555a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
556a30f8f8cSSatish Balay 
557a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
558a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
559a30f8f8cSSatish Balay   /*
560a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
561a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
562a30f8f8cSSatish Balay   */
563a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
564ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
565a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
566ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
567a30f8f8cSSatish Balay     }
568a30f8f8cSSatish Balay   }
569a30f8f8cSSatish Balay 
570a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
57140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
572a30f8f8cSSatish Balay   }
573a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay 
57674ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
57726fbe8dcSKarl Rupp 
578a30f8f8cSSatish Balay   baij->rowvalues = 0;
5794f9cfa9eSBarry Smith 
5804f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
5814f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
582e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
58309e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
584e56f5c9eSBarry Smith   }
585a30f8f8cSSatish Balay   PetscFunctionReturn(0);
586a30f8f8cSSatish Balay }
587a30f8f8cSSatish Balay 
5887da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
589dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
5909804daf3SBarry Smith #include <petscdraw.h>
5914a2ae208SSatish Balay #undef __FUNCT__
5924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
5936849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
594a30f8f8cSSatish Balay {
595a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
596dfbe8321SBarry Smith   PetscErrorCode    ierr;
597d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
5987da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
599ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
600b0a32e0cSBarry Smith   PetscViewer       sviewer;
601f3ef73ceSBarry Smith   PetscViewerFormat format;
602a30f8f8cSSatish Balay 
603a30f8f8cSSatish Balay   PetscFunctionBegin;
604251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
605251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
60632077d6dSBarry Smith   if (iascii) {
607b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
608456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
609a30f8f8cSSatish Balay       MatInfo info;
610ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
611a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6127b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6137b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
614a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
615e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
616a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
617e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
618b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6197b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
62007d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
621a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
622a30f8f8cSSatish Balay       PetscFunctionReturn(0);
623fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
62477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       PetscFunctionReturn(0);
626c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
627c1490034SHong Zhang       PetscFunctionReturn(0);
628a30f8f8cSSatish Balay     }
629a30f8f8cSSatish Balay   }
630a30f8f8cSSatish Balay 
631a30f8f8cSSatish Balay   if (isdraw) {
632b0a32e0cSBarry Smith     PetscDraw draw;
633ace3abfcSBarry Smith     PetscBool isnull;
634b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
635b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
636a30f8f8cSSatish Balay   }
637a30f8f8cSSatish Balay 
6387da1fb6eSBarry Smith   {
639a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
640a30f8f8cSSatish Balay     Mat          A;
64165d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
64265d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
643d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
644a30f8f8cSSatish Balay     MatScalar    *a;
6453e219373SBarry Smith     const char   *matname;
646a30f8f8cSSatish Balay 
647f204ca49SKris Buschelman     /* Should this be the same type as mat? */
648ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
649a30f8f8cSSatish Balay     if (!rank) {
650f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
651a30f8f8cSSatish Balay     } else {
652f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
653a30f8f8cSSatish Balay     }
654f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
6550298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
6562b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
6573bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
658a30f8f8cSSatish Balay 
659a30f8f8cSSatish Balay     /* copy over the A part */
66065d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
661a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
662785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
663a30f8f8cSSatish Balay 
664a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
665e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
66626fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
667a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
668e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
669a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
670dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
67126fbe8dcSKarl Rupp           col++;
67226fbe8dcSKarl Rupp           a += bs;
673a30f8f8cSSatish Balay         }
674a30f8f8cSSatish Balay       }
675a30f8f8cSSatish Balay     }
676a30f8f8cSSatish Balay     /* copy over the B part */
67765d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
67865d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
679a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
680e9f7bc9eSHong Zhang 
681e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
68226fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
683a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
684a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
685a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
686799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
68726fbe8dcSKarl Rupp           col++;
68826fbe8dcSKarl Rupp           a += bs;
689a30f8f8cSSatish Balay         }
690a30f8f8cSSatish Balay       }
691a30f8f8cSSatish Balay     }
692a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
693a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
694a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
695a30f8f8cSSatish Balay     /*
696a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
697b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
698a30f8f8cSSatish Balay     */
699b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
700ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
7013e219373SBarry Smith     if (!rank) {
702ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
7037da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     }
705b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7066bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
707a30f8f8cSSatish Balay   }
708a30f8f8cSSatish Balay   PetscFunctionReturn(0);
709a30f8f8cSSatish Balay }
710a30f8f8cSSatish Balay 
7114a2ae208SSatish Balay #undef __FUNCT__
7124a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
713dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
714a30f8f8cSSatish Balay {
715dfbe8321SBarry Smith   PetscErrorCode ierr;
716ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
717a30f8f8cSSatish Balay 
718a30f8f8cSSatish Balay   PetscFunctionBegin;
719251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
720251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
721251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
722251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
72332077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
724a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
725a30f8f8cSSatish Balay   }
726a30f8f8cSSatish Balay   PetscFunctionReturn(0);
727a30f8f8cSSatish Balay }
728a30f8f8cSSatish Balay 
7294a2ae208SSatish Balay #undef __FUNCT__
7304a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
731dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
732a30f8f8cSSatish Balay {
733a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
734dfbe8321SBarry Smith   PetscErrorCode ierr;
735a30f8f8cSSatish Balay 
736a30f8f8cSSatish Balay   PetscFunctionBegin;
737a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
738d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
739a30f8f8cSSatish Balay #endif
740a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
741a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7426bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7436bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
744a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
7456bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
746a30f8f8cSSatish Balay #else
74705b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
748a30f8f8cSSatish Balay #endif
74905b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7506bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7516bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7526bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7536bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7546bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7556bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7566bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7576bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7585755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
75905b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
76005b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7616bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7626bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7636bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
764ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
76505b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
766a30f8f8cSSatish Balay #endif
76759ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
76859ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
769899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
770bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
771901853e0SKris Buschelman 
772dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
773bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
774bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
775bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
776bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
777bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
778a30f8f8cSSatish Balay   PetscFunctionReturn(0);
779a30f8f8cSSatish Balay }
780a30f8f8cSSatish Balay 
7814a2ae208SSatish Balay #undef __FUNCT__
782547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
783547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
784547795f9SHong Zhang {
785547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
786547795f9SHong Zhang   PetscErrorCode ierr;
787547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
788547795f9SHong Zhang   PetscScalar    *x,*from;
789547795f9SHong Zhang 
790547795f9SHong Zhang   PetscFunctionBegin;
791547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
792e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
793547795f9SHong Zhang 
794547795f9SHong Zhang   /* diagonal part */
795547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
796547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
797547795f9SHong Zhang 
798547795f9SHong Zhang   /* subdiagonal part */
799547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
800547795f9SHong Zhang 
801547795f9SHong Zhang   /* copy x into the vec slvec0 */
802547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
803547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
804547795f9SHong Zhang 
805547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
806547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
807547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
808547795f9SHong Zhang 
809547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
810547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
811547795f9SHong Zhang   /* supperdiagonal part */
812547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
813547795f9SHong Zhang   PetscFunctionReturn(0);
814547795f9SHong Zhang }
815547795f9SHong Zhang 
816547795f9SHong Zhang #undef __FUNCT__
817a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
818dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
819a9d4b620SHong Zhang {
820a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
821dfbe8321SBarry Smith   PetscErrorCode ierr;
822d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
823fa22f6d0SBarry Smith   PetscScalar    *x,*from;
824a9d4b620SHong Zhang 
825a9d4b620SHong Zhang   PetscFunctionBegin;
826a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
827e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
828a9d4b620SHong Zhang 
829a9d4b620SHong Zhang   /* diagonal part */
830a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
831fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
832a9d4b620SHong Zhang 
833a9d4b620SHong Zhang   /* subdiagonal part */
834a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
835fc165ae2SBarry Smith 
836a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8371ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8381ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
839a9d4b620SHong Zhang 
840fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
841fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8421ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
843fc165ae2SBarry Smith 
844fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
845ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
846a9d4b620SHong Zhang   /* supperdiagonal part */
847a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
848a9d4b620SHong Zhang   PetscFunctionReturn(0);
849a9d4b620SHong Zhang }
850a9d4b620SHong Zhang 
851a9d4b620SHong Zhang #undef __FUNCT__
85240781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
853dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
854a30f8f8cSSatish Balay {
855a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
856dfbe8321SBarry Smith   PetscErrorCode ierr;
8571302d50aSBarry Smith   PetscInt       nt;
858a30f8f8cSSatish Balay 
859a30f8f8cSSatish Balay   PetscFunctionBegin;
860a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
861e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
862e7e72b3dSBarry Smith 
863a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
864e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
86565d70643SHong Zhang 
866ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
867b941877fSHong Zhang   /* do diagonal part */
868b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
869b941877fSHong Zhang   /* do supperdiagonal part */
870ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
871b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
872b941877fSHong Zhang   /* do subdiagonal part */
873b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
874ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
875ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
876a30f8f8cSSatish Balay   PetscFunctionReturn(0);
877a30f8f8cSSatish Balay }
878a30f8f8cSSatish Balay 
8794a2ae208SSatish Balay #undef __FUNCT__
8804a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
881dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
882a30f8f8cSSatish Balay {
883de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
884dfbe8321SBarry Smith   PetscErrorCode ierr;
885d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
886a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
887a9d4b620SHong Zhang 
888a9d4b620SHong Zhang   PetscFunctionBegin;
889a9d4b620SHong Zhang   /*
890ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
8910ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
892a9d4b620SHong Zhang   */
893a9d4b620SHong Zhang   /* diagonal part */
894a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
8952dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
896a9d4b620SHong Zhang 
897a9d4b620SHong Zhang   /* subdiagonal part */
898a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
899a9d4b620SHong Zhang 
900a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9011ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9021ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
903a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9041ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
905a9d4b620SHong Zhang 
906ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9071ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
908ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
909a9d4b620SHong Zhang 
910a9d4b620SHong Zhang   /* supperdiagonal part */
911a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
912a9d4b620SHong Zhang   PetscFunctionReturn(0);
913a9d4b620SHong Zhang }
914a9d4b620SHong Zhang 
915a9d4b620SHong Zhang #undef __FUNCT__
916a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
917dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
918a9d4b620SHong Zhang {
919a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
920dfbe8321SBarry Smith   PetscErrorCode ierr;
921a30f8f8cSSatish Balay 
922a30f8f8cSSatish Balay   PetscFunctionBegin;
923ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
924b941877fSHong Zhang   /* do diagonal part */
925b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
926b941877fSHong Zhang   /* do supperdiagonal part */
927ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
928de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
929de8b6608SHong Zhang 
930b941877fSHong Zhang   /* do subdiagonal part */
931a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
932ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
933ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
934a30f8f8cSSatish Balay   PetscFunctionReturn(0);
935a30f8f8cSSatish Balay }
936a30f8f8cSSatish Balay 
937a30f8f8cSSatish Balay /*
938a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
939a30f8f8cSSatish Balay    diagonal block
940a30f8f8cSSatish Balay */
9414a2ae208SSatish Balay #undef __FUNCT__
9424a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
943dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
944a30f8f8cSSatish Balay {
945a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
946dfbe8321SBarry Smith   PetscErrorCode ierr;
947a30f8f8cSSatish Balay 
948a30f8f8cSSatish Balay   PetscFunctionBegin;
949e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
950a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
951a30f8f8cSSatish Balay   PetscFunctionReturn(0);
952a30f8f8cSSatish Balay }
953a30f8f8cSSatish Balay 
9544a2ae208SSatish Balay #undef __FUNCT__
9554a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
956f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
957a30f8f8cSSatish Balay {
958a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
959dfbe8321SBarry Smith   PetscErrorCode ierr;
960a30f8f8cSSatish Balay 
961a30f8f8cSSatish Balay   PetscFunctionBegin;
962f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
963f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
964a30f8f8cSSatish Balay   PetscFunctionReturn(0);
965a30f8f8cSSatish Balay }
966a30f8f8cSSatish Balay 
9674a2ae208SSatish Balay #undef __FUNCT__
9684a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9691302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
970a30f8f8cSSatish Balay {
971d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
972d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
973d0d4cfc2SHong Zhang   PetscErrorCode ierr;
974d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
975d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
976899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
977d0d4cfc2SHong Zhang 
978a30f8f8cSSatish Balay   PetscFunctionBegin;
979e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
980d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
981d0d4cfc2SHong Zhang 
982d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
983d0d4cfc2SHong Zhang     /*
984d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
985d0d4cfc2SHong Zhang     */
986d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
987d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
988d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
989d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
990d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
99126fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
992d0d4cfc2SHong Zhang     }
993dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
994d0d4cfc2SHong Zhang   }
995d0d4cfc2SHong Zhang 
996e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
997d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
998d0d4cfc2SHong Zhang 
999d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1000d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1001d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1002d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1003d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1004d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1005d0d4cfc2SHong Zhang 
1006d0d4cfc2SHong Zhang   cmap = mat->garray;
1007d0d4cfc2SHong Zhang   if (v  || idx) {
1008d0d4cfc2SHong Zhang     if (nztot) {
1009d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1010d0d4cfc2SHong Zhang       PetscInt imark = -1;
1011d0d4cfc2SHong Zhang       if (v) {
1012d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1013d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1014d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1015d0d4cfc2SHong Zhang           else break;
1016d0d4cfc2SHong Zhang         }
1017d0d4cfc2SHong Zhang         imark = i;
1018d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1019d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1020d0d4cfc2SHong Zhang       }
1021d0d4cfc2SHong Zhang       if (idx) {
1022d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1023d0d4cfc2SHong Zhang         if (imark > -1) {
1024d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1025d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1026d0d4cfc2SHong Zhang           }
1027d0d4cfc2SHong Zhang         } else {
1028d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
102926fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1030d0d4cfc2SHong Zhang             else break;
1031d0d4cfc2SHong Zhang           }
1032d0d4cfc2SHong Zhang           imark = i;
1033d0d4cfc2SHong Zhang         }
1034d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1035d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1036d0d4cfc2SHong Zhang       }
1037d0d4cfc2SHong Zhang     } else {
1038d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1039d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1040d0d4cfc2SHong Zhang     }
1041d0d4cfc2SHong Zhang   }
1042d0d4cfc2SHong Zhang   *nz  = nztot;
1043d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1044d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1045a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1046a30f8f8cSSatish Balay }
1047a30f8f8cSSatish Balay 
10484a2ae208SSatish Balay #undef __FUNCT__
10494a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10501302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1051a30f8f8cSSatish Balay {
1052a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1053a30f8f8cSSatish Balay 
1054a30f8f8cSSatish Balay   PetscFunctionBegin;
1055e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1056a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1057a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1058a30f8f8cSSatish Balay }
1059a30f8f8cSSatish Balay 
10604a2ae208SSatish Balay #undef __FUNCT__
1061d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1062d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1063d0d4cfc2SHong Zhang {
1064d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1065d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1066d0d4cfc2SHong Zhang 
1067d0d4cfc2SHong Zhang   PetscFunctionBegin;
1068d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1069d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1070d0d4cfc2SHong Zhang }
1071d0d4cfc2SHong Zhang #undef __FUNCT__
1072d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1073d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1074d0d4cfc2SHong Zhang {
1075d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1076d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1077d0d4cfc2SHong Zhang 
1078d0d4cfc2SHong Zhang   PetscFunctionBegin;
1079d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1080d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1081d0d4cfc2SHong Zhang }
1082d0d4cfc2SHong Zhang 
1083d0d4cfc2SHong Zhang #undef __FUNCT__
108499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
108599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
108699cafbc1SBarry Smith {
108799cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
108899cafbc1SBarry Smith   PetscErrorCode ierr;
108999cafbc1SBarry Smith 
109099cafbc1SBarry Smith   PetscFunctionBegin;
109199cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
109299cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
109399cafbc1SBarry Smith   PetscFunctionReturn(0);
109499cafbc1SBarry Smith }
109599cafbc1SBarry Smith 
109699cafbc1SBarry Smith #undef __FUNCT__
109799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
109899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
109999cafbc1SBarry Smith {
110099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110199cafbc1SBarry Smith   PetscErrorCode ierr;
110299cafbc1SBarry Smith 
110399cafbc1SBarry Smith   PetscFunctionBegin;
110499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
110599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
110699cafbc1SBarry Smith   PetscFunctionReturn(0);
110799cafbc1SBarry Smith }
110899cafbc1SBarry Smith 
110999cafbc1SBarry Smith #undef __FUNCT__
11104a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1111dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1112a30f8f8cSSatish Balay {
1113a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1114dfbe8321SBarry Smith   PetscErrorCode ierr;
1115a30f8f8cSSatish Balay 
1116a30f8f8cSSatish Balay   PetscFunctionBegin;
1117a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1118a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1119a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1120a30f8f8cSSatish Balay }
1121a30f8f8cSSatish Balay 
11224a2ae208SSatish Balay #undef __FUNCT__
11234a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1124dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1125a30f8f8cSSatish Balay {
1126a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1127a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1128dfbe8321SBarry Smith   PetscErrorCode ierr;
1129a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1130a30f8f8cSSatish Balay 
1131a30f8f8cSSatish Balay   PetscFunctionBegin;
1132d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
113326fbe8dcSKarl Rupp 
1134a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
113526fbe8dcSKarl Rupp 
1136a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1137a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
113826fbe8dcSKarl Rupp 
1139a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
114026fbe8dcSKarl Rupp 
1141a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1142a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1143a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1144a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1145a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1146a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1147a30f8f8cSSatish Balay     info->memory       = isend[3];
1148a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1149a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1150ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
115126fbe8dcSKarl Rupp 
1152a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1153a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1154a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1155a30f8f8cSSatish Balay     info->memory       = irecv[3];
1156a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1157a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1158ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
115926fbe8dcSKarl Rupp 
1160a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1161a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1162a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1163a30f8f8cSSatish Balay     info->memory       = irecv[3];
1164a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1165f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1166a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1167a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1168a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1169a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1170a30f8f8cSSatish Balay }
1171a30f8f8cSSatish Balay 
11724a2ae208SSatish Balay #undef __FUNCT__
11734a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1174ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1175a30f8f8cSSatish Balay {
1176a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1177d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1178dfbe8321SBarry Smith   PetscErrorCode ierr;
1179a30f8f8cSSatish Balay 
1180a30f8f8cSSatish Balay   PetscFunctionBegin;
1181e98b92d7SKris Buschelman   switch (op) {
1182512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1183e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
118428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1185a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1186e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
11874e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
11884e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1189e98b92d7SKris Buschelman     break;
1190e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
11914e0d8c25SBarry Smith     a->roworiented = flg;
119226fbe8dcSKarl Rupp 
11934e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
11944e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1195e98b92d7SKris Buschelman     break;
11964e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1197290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1198e98b92d7SKris Buschelman     break;
1199e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12004e0d8c25SBarry Smith     a->donotstash = flg;
1201e98b92d7SKris Buschelman     break;
1202e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12034e0d8c25SBarry Smith     a->ht_flag = flg;
1204e98b92d7SKris Buschelman     break;
12059a4540c5SBarry Smith   case MAT_HERMITIAN:
1206e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1207eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
120826fbe8dcSKarl Rupp 
1209547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1210eeffb40dSHong Zhang     break;
1211ffa07934SHong Zhang   case MAT_SPD:
1212ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1213ffa07934SHong Zhang     A->spd     = flg;
1214ffa07934SHong Zhang     if (flg) {
1215ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1216ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1217ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1218ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1219ffa07934SHong Zhang     }
1220ffa07934SHong Zhang     break;
122177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1222eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1223eeffb40dSHong Zhang     break;
122477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1225eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1226eeffb40dSHong Zhang     break;
12279a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1228e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1229290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
123077e54ba9SKris Buschelman     break;
1231d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12324e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1233d0d4cfc2SHong Zhang     break;
1234d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12354e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1236d0d4cfc2SHong Zhang     break;
1237d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12384e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1239d0d4cfc2SHong Zhang     break;
1240e98b92d7SKris Buschelman   default:
1241e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1242a30f8f8cSSatish Balay   }
1243a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1244a30f8f8cSSatish Balay }
1245a30f8f8cSSatish Balay 
12464a2ae208SSatish Balay #undef __FUNCT__
12478115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1248fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1249a30f8f8cSSatish Balay {
1250dfbe8321SBarry Smith   PetscErrorCode ierr;
12516e111a19SKarl Rupp 
1252a30f8f8cSSatish Balay   PetscFunctionBegin;
1253815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1254999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1255fc4dec0aSBarry Smith   }
12568115998fSBarry Smith   PetscFunctionReturn(0);
1257a30f8f8cSSatish Balay }
1258a30f8f8cSSatish Balay 
12594a2ae208SSatish Balay #undef __FUNCT__
12604a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1261dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1262a30f8f8cSSatish Balay {
1263a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1264a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1265dfbe8321SBarry Smith   PetscErrorCode ierr;
12665e90f9d9SHong Zhang   PetscInt       nv,m,n;
1267ace3abfcSBarry Smith   PetscBool      flg;
1268a30f8f8cSSatish Balay 
1269a30f8f8cSSatish Balay   PetscFunctionBegin;
1270a30f8f8cSSatish Balay   if (ll != rr) {
1271b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1272e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1273a30f8f8cSSatish Balay   }
1274b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1275b3bf805bSHong Zhang 
12765e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1277e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1278b3bf805bSHong Zhang 
12795e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1280e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12815e90f9d9SHong Zhang 
1282ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12835e90f9d9SHong Zhang 
12845e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
12850298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
12865e90f9d9SHong Zhang 
12875e90f9d9SHong Zhang   /* scale the diagonal part */
1288a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1289a30f8f8cSSatish Balay 
12905e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1291ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12920298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1293a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1294a30f8f8cSSatish Balay }
1295a30f8f8cSSatish Balay 
12964a2ae208SSatish Balay #undef __FUNCT__
12974a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1298dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1299a30f8f8cSSatish Balay {
1300f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1301dfbe8321SBarry Smith   PetscErrorCode ierr;
1302a30f8f8cSSatish Balay 
1303a30f8f8cSSatish Balay   PetscFunctionBegin;
1304a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1305a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1306a30f8f8cSSatish Balay }
1307a30f8f8cSSatish Balay 
13086849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1309a30f8f8cSSatish Balay 
13104a2ae208SSatish Balay #undef __FUNCT__
13114a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1312ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1313a30f8f8cSSatish Balay {
1314a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1315a30f8f8cSSatish Balay   Mat            a,b,c,d;
1316ace3abfcSBarry Smith   PetscBool      flg;
1317dfbe8321SBarry Smith   PetscErrorCode ierr;
1318a30f8f8cSSatish Balay 
1319a30f8f8cSSatish Balay   PetscFunctionBegin;
1320a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1321a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1322a30f8f8cSSatish Balay 
1323a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1324abc0a331SBarry Smith   if (flg) {
1325a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1326a30f8f8cSSatish Balay   }
1327ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1328a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1329a30f8f8cSSatish Balay }
1330a30f8f8cSSatish Balay 
13314a2ae208SSatish Balay #undef __FUNCT__
13323c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13333c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13343c896bc6SHong Zhang {
13353c896bc6SHong Zhang   PetscErrorCode ierr;
13363c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
13373c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
13383c896bc6SHong Zhang 
13393c896bc6SHong Zhang   PetscFunctionBegin;
13403c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13413c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1342d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13433c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1344d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13453c896bc6SHong Zhang   } else {
13463c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13473c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13483c896bc6SHong Zhang   }
13493c896bc6SHong Zhang   PetscFunctionReturn(0);
13503c896bc6SHong Zhang }
13513c896bc6SHong Zhang 
13523c896bc6SHong Zhang #undef __FUNCT__
13534994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
13544994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1355273d9f13SBarry Smith {
1356dfbe8321SBarry Smith   PetscErrorCode ierr;
1357273d9f13SBarry Smith 
1358273d9f13SBarry Smith   PetscFunctionBegin;
1359535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1360273d9f13SBarry Smith   PetscFunctionReturn(0);
1361273d9f13SBarry Smith }
1362a5e6ed63SBarry Smith 
13634fe895cdSHong Zhang #undef __FUNCT__
13644fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13654fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13664fe895cdSHong Zhang {
13674fe895cdSHong Zhang   PetscErrorCode ierr;
13684fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
13694fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13704fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13714fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13724fe895cdSHong Zhang 
13734fe895cdSHong Zhang   PetscFunctionBegin;
13744fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13754fe895cdSHong Zhang     PetscScalar alpha = a;
13764fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
13774fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1378c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
13798b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
13804fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
13814fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1382c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
13838b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1384a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
13854fe895cdSHong Zhang   } else {
13864de5dceeSHong Zhang     Mat      B;
13874de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
13884de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1389d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13904de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
13914de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
13924de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
13934de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
13944de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
13954de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
13964de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
13974de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
13984de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
13994de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
14004de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
14014de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
14024de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
14034de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
14044de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1405d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14064de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
14074fe895cdSHong Zhang   }
14084fe895cdSHong Zhang   PetscFunctionReturn(0);
14094fe895cdSHong Zhang }
14104fe895cdSHong Zhang 
1411a5e6ed63SBarry Smith #undef __FUNCT__
1412a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14131302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1414a5e6ed63SBarry Smith {
14156849ba73SBarry Smith   PetscErrorCode ierr;
14161302d50aSBarry Smith   PetscInt       i;
1417ace3abfcSBarry Smith   PetscBool      flg;
1418a5e6ed63SBarry Smith 
14196849ba73SBarry Smith   PetscFunctionBegin;
1420a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1421a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1422e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1423a5e6ed63SBarry Smith   }
1424a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1425a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1426a5e6ed63SBarry Smith }
1427a5e6ed63SBarry Smith 
1428a5e6ed63SBarry Smith 
1429a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
14303964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1431a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1432a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1433a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
143497304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1435431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1436431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1437a30f8f8cSSatish Balay                                        0,
1438a30f8f8cSSatish Balay                                        0,
1439a30f8f8cSSatish Balay                                        0,
144097304618SKris Buschelman                                /* 10*/ 0,
1441a30f8f8cSSatish Balay                                        0,
1442a30f8f8cSSatish Balay                                        0,
144341f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1444a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
144597304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1446a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1447a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1448a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1449a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
145097304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1451a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1452a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1453a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1454d519adbfSMatthew Knepley                                /* 24*/ 0,
1455a30f8f8cSSatish Balay                                        0,
1456a30f8f8cSSatish Balay                                        0,
1457a30f8f8cSSatish Balay                                        0,
1458a30f8f8cSSatish Balay                                        0,
14594994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1460b5df2d14SHong Zhang                                        0,
1461a30f8f8cSSatish Balay                                        0,
1462a30f8f8cSSatish Balay                                        0,
1463a30f8f8cSSatish Balay                                        0,
1464d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1465a30f8f8cSSatish Balay                                        0,
1466a30f8f8cSSatish Balay                                        0,
1467a30f8f8cSSatish Balay                                        0,
1468a30f8f8cSSatish Balay                                        0,
1469d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1470a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1471d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1472a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
14733c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1474d519adbfSMatthew Knepley                                /* 44*/ 0,
1475a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1476a30f8f8cSSatish Balay                                        0,
1477a30f8f8cSSatish Balay                                        0,
1478a30f8f8cSSatish Balay                                        0,
1479f73d5cc4SBarry Smith                                /* 49*/ 0,
1480a30f8f8cSSatish Balay                                        0,
1481a30f8f8cSSatish Balay                                        0,
1482a30f8f8cSSatish Balay                                        0,
1483a30f8f8cSSatish Balay                                        0,
1484d519adbfSMatthew Knepley                                /* 54*/ 0,
1485a30f8f8cSSatish Balay                                        0,
1486a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1487a30f8f8cSSatish Balay                                        0,
1488a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
1489d519adbfSMatthew Knepley                                /* 59*/ 0,
1490a30f8f8cSSatish Balay                                        0,
1491a30f8f8cSSatish Balay                                        0,
1492357abbc8SBarry Smith                                        0,
149324d5174aSHong Zhang                                        0,
1494d519adbfSMatthew Knepley                                /* 64*/ 0,
149524d5174aSHong Zhang                                        0,
149624d5174aSHong Zhang                                        0,
149724d5174aSHong Zhang                                        0,
149824d5174aSHong Zhang                                        0,
1499d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
150024d5174aSHong Zhang                                        0,
150197304618SKris Buschelman                                        0,
150297304618SKris Buschelman                                        0,
150397304618SKris Buschelman                                        0,
1504d519adbfSMatthew Knepley                                /* 74*/ 0,
150597304618SKris Buschelman                                        0,
150697304618SKris Buschelman                                        0,
150797304618SKris Buschelman                                        0,
150897304618SKris Buschelman                                        0,
1509d519adbfSMatthew Knepley                                /* 79*/ 0,
151097304618SKris Buschelman                                        0,
151197304618SKris Buschelman                                        0,
151297304618SKris Buschelman                                        0,
15135bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1514d519adbfSMatthew Knepley                                /* 84*/ 0,
1515865e5f61SKris Buschelman                                        0,
1516865e5f61SKris Buschelman                                        0,
1517865e5f61SKris Buschelman                                        0,
1518865e5f61SKris Buschelman                                        0,
1519d519adbfSMatthew Knepley                                /* 89*/ 0,
1520865e5f61SKris Buschelman                                        0,
1521865e5f61SKris Buschelman                                        0,
1522865e5f61SKris Buschelman                                        0,
1523865e5f61SKris Buschelman                                        0,
1524d519adbfSMatthew Knepley                                /* 94*/ 0,
1525865e5f61SKris Buschelman                                        0,
1526865e5f61SKris Buschelman                                        0,
152799cafbc1SBarry Smith                                        0,
152899cafbc1SBarry Smith                                        0,
1529d519adbfSMatthew Knepley                                /* 99*/ 0,
153099cafbc1SBarry Smith                                        0,
153199cafbc1SBarry Smith                                        0,
153299cafbc1SBarry Smith                                        0,
153399cafbc1SBarry Smith                                        0,
1534d519adbfSMatthew Knepley                                /*104*/ 0,
153599cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1536d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1537d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
153895936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
153995936485SShri Abhyankar                                /*109*/ 0,
154095936485SShri Abhyankar                                        0,
154195936485SShri Abhyankar                                        0,
154295936485SShri Abhyankar                                        0,
154395936485SShri Abhyankar                                        0,
154495936485SShri Abhyankar                                /*114*/ 0,
154595936485SShri Abhyankar                                        0,
154695936485SShri Abhyankar                                        0,
154795936485SShri Abhyankar                                        0,
154895936485SShri Abhyankar                                        0,
154995936485SShri Abhyankar                                /*119*/ 0,
155095936485SShri Abhyankar                                        0,
155195936485SShri Abhyankar                                        0,
15523964eb88SJed Brown                                        0,
15533964eb88SJed Brown                                        0,
15543964eb88SJed Brown                                /*124*/ 0,
15553964eb88SJed Brown                                        0,
15563964eb88SJed Brown                                        0,
15573964eb88SJed Brown                                        0,
15583964eb88SJed Brown                                        0,
15593964eb88SJed Brown                                /*129*/ 0,
15603964eb88SJed Brown                                        0,
15613964eb88SJed Brown                                        0,
15623964eb88SJed Brown                                        0,
15633964eb88SJed Brown                                        0,
15643964eb88SJed Brown                                /*134*/ 0,
15653964eb88SJed Brown                                        0,
15663964eb88SJed Brown                                        0,
15673964eb88SJed Brown                                        0,
15683964eb88SJed Brown                                        0,
15693964eb88SJed Brown                                /*139*/ 0,
1570f9426fe0SMark Adams                                        0,
15715bba2384SShri Abhyankar                                        0
157299cafbc1SBarry Smith };
1573a30f8f8cSSatish Balay 
1574a30f8f8cSSatish Balay 
15754a2ae208SSatish Balay #undef __FUNCT__
15764a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
157711bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1578a30f8f8cSSatish Balay {
1579a30f8f8cSSatish Balay   PetscFunctionBegin;
1580a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1581a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1582a30f8f8cSSatish Balay }
1583a30f8f8cSSatish Balay 
15844a2ae208SSatish Balay #undef __FUNCT__
1585a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1586b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1587a23d5eceSKris Buschelman {
1588a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1589dfbe8321SBarry Smith   PetscErrorCode ierr;
1590535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1591a23d5eceSKris Buschelman 
1592a23d5eceSKris Buschelman   PetscFunctionBegin;
159333d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
159426283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
159526283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1596e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1597899cda47SBarry Smith 
1598a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1599d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1600d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1601c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1602a23d5eceSKris Buschelman 
1603d0f46423SBarry Smith   B->rmap->bs = bs;
1604a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1605a23d5eceSKris Buschelman   b->mbs      = mbs;
1606a23d5eceSKris Buschelman   b->nbs      = mbs;
1607a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1608a23d5eceSKris Buschelman   b->Nbs      = Mbs;
1609a23d5eceSKris Buschelman 
1610a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1611d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1612a23d5eceSKris Buschelman   }
1613d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1614d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1615a23d5eceSKris Buschelman 
1616d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1617d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1618a23d5eceSKris Buschelman 
1619526dfc15SBarry Smith   if (!B->preallocated) {
1620f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1621d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16229c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
16233bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1624f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1625d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16264aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
16273bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1628ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1629526dfc15SBarry Smith   }
1630a23d5eceSKris Buschelman 
1631526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1632526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
163326fbe8dcSKarl Rupp 
1634526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1635a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1636a23d5eceSKris Buschelman }
1637a23d5eceSKris Buschelman 
1638dfb205c3SBarry Smith #undef __FUNCT__
1639dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1640dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1641dfb205c3SBarry Smith {
1642dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1643dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1644dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1645dfb205c3SBarry Smith   PetscScalar    *values=0;
1646dfb205c3SBarry Smith   PetscErrorCode ierr;
1647dfb205c3SBarry Smith 
1648dfb205c3SBarry Smith   PetscFunctionBegin;
1649ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1650dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1651dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1652dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1653dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1654e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1655dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1656dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1657dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1658dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1659dfb205c3SBarry Smith 
1660dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1661dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1662dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1663dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1664dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1665dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1666dfb205c3SBarry Smith     JJ     = jj + ii[i];
1667dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1668dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1669dfb205c3SBarry Smith       JJ++;
1670dfb205c3SBarry Smith     }
1671dfb205c3SBarry Smith     d = 0;
1672dfb205c3SBarry Smith     for (; j<nz; j++) {
1673dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1674dfb205c3SBarry Smith       d++;
1675dfb205c3SBarry Smith     }
1676dfb205c3SBarry Smith     d_nnz[i] = d;
1677dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1678dfb205c3SBarry Smith   }
1679dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1680dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1681dfb205c3SBarry Smith 
1682dfb205c3SBarry Smith   values = (PetscScalar*)V;
1683dfb205c3SBarry Smith   if (!values) {
1684785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
1685dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1686dfb205c3SBarry Smith   }
1687dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1688dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1689dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1690dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1691dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1692dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1693dfb205c3SBarry Smith   }
1694dfb205c3SBarry Smith 
1695dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1696dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1697dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16987827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1699dfb205c3SBarry Smith   PetscFunctionReturn(0);
1700dfb205c3SBarry Smith }
1701dfb205c3SBarry Smith 
1702611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
17038cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1704611f576cSBarry Smith #endif
1705b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
17068cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1707b5e56a35SBarry Smith #endif
17085c9eb25fSBarry Smith 
17090bad9183SKris Buschelman /*MC
1710fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1711828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1712828413b8SBarry Smith    the matrix is stored.
1713828413b8SBarry Smith 
1714828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1715828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17160bad9183SKris Buschelman 
17170bad9183SKris Buschelman    Options Database Keys:
17180bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17190bad9183SKris Buschelman 
17200bad9183SKris Buschelman   Level: beginner
17210bad9183SKris Buschelman 
17220bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17230bad9183SKris Buschelman M*/
17240bad9183SKris Buschelman 
17258cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1726aa5a9175SDahai Guo 
1727a23d5eceSKris Buschelman #undef __FUNCT__
17284a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17298cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1730b5df2d14SHong Zhang {
1731b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1732dfbe8321SBarry Smith   PetscErrorCode ierr;
1733ace3abfcSBarry Smith   PetscBool      flg;
1734b5df2d14SHong Zhang 
1735b5df2d14SHong Zhang   PetscFunctionBegin;
1736b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
1737b0a32e0cSBarry Smith   B->data = (void*)b;
1738b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1739b5df2d14SHong Zhang 
1740b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
1741b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
1742b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
1743b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
174426fbe8dcSKarl Rupp 
1745ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
1746ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
1747b5df2d14SHong Zhang 
1748b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1749785e854fSJed Brown   ierr = PetscMalloc1((b->size+2),&b->rangebs);CHKERRQ(ierr);
1750b5df2d14SHong Zhang 
1751b5df2d14SHong Zhang   /* build cache for off array entries formed */
1752ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
175326fbe8dcSKarl Rupp 
1754b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
17550298fd71SBarry Smith   b->colmap      = NULL;
17560298fd71SBarry Smith   b->garray      = NULL;
1757b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1758b5df2d14SHong Zhang 
1759b5df2d14SHong Zhang   /* stuff used in block assembly */
1760b5df2d14SHong Zhang   b->barray = 0;
1761b5df2d14SHong Zhang 
1762b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1763b5df2d14SHong Zhang   b->lvec    = 0;
1764b5df2d14SHong Zhang   b->Mvctx   = 0;
176540781036SHong Zhang   b->slvec0  = 0;
176640781036SHong Zhang   b->slvec0b = 0;
176740781036SHong Zhang   b->slvec1  = 0;
176840781036SHong Zhang   b->slvec1a = 0;
176940781036SHong Zhang   b->slvec1b = 0;
177040781036SHong Zhang   b->sMvctx  = 0;
1771b5df2d14SHong Zhang 
1772b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1773b5df2d14SHong Zhang   b->rowindices   = 0;
1774b5df2d14SHong Zhang   b->rowvalues    = 0;
1775b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1776b5df2d14SHong Zhang 
1777b5df2d14SHong Zhang   /* hash table stuff */
1778b5df2d14SHong Zhang   b->ht           = 0;
1779b5df2d14SHong Zhang   b->hd           = 0;
1780b5df2d14SHong Zhang   b->ht_size      = 0;
1781b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1782b5df2d14SHong Zhang   b->ht_fact      = 0;
1783b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1784b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1785b5df2d14SHong Zhang 
17867a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
17877a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
17887a868f3eSHong Zhang 
178959ffdab8SBarry Smith   b->in_loc = 0;
179059ffdab8SBarry Smith   b->v_loc  = 0;
179159ffdab8SBarry Smith   b->n_loc  = 0;
1792ce94432eSBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17930298fd71SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr);
1794b5df2d14SHong Zhang   if (flg) {
1795f6275e2eSBarry Smith     PetscReal fact = 1.39;
17964e0d8c25SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17970298fd71SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
1798b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1799b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
18001e2582c4SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1801b5df2d14SHong Zhang   }
18028c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
18038c07d4e3SBarry Smith 
1804b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1805bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1806b5e56a35SBarry Smith #endif
1807611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1808bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1809611f576cSBarry Smith #endif
1810bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1811bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1812bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1813bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1814bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1815bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
1816aa5a9175SDahai Guo 
181723ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
181823ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
181923ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
182023ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
182126fbe8dcSKarl Rupp 
182217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1823b5df2d14SHong Zhang   PetscFunctionReturn(0);
1824b5df2d14SHong Zhang }
1825b5df2d14SHong Zhang 
1826209238afSKris Buschelman /*MC
1827002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1828209238afSKris Buschelman 
1829209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1830209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1831209238afSKris Buschelman 
1832209238afSKris Buschelman    Options Database Keys:
1833209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1834209238afSKris Buschelman 
1835209238afSKris Buschelman   Level: beginner
1836209238afSKris Buschelman 
1837209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1838209238afSKris Buschelman M*/
1839209238afSKris Buschelman 
18404a2ae208SSatish Balay #undef __FUNCT__
18414a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1842b5df2d14SHong Zhang /*@C
1843b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1844b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1845b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1846b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang    Collective on Mat
1849b5df2d14SHong Zhang 
1850b5df2d14SHong Zhang    Input Parameters:
18511c4f3114SJed Brown +  B - the matrix
1852b5df2d14SHong Zhang .  bs   - size of blockk
1853b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1854b5df2d14SHong Zhang            submatrix  (same for all local rows)
1855b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18566d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18570298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
185895742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1859b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1860b5df2d14SHong Zhang            submatrix (same for all local rows).
1861b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1862c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
18630298fd71SBarry Smith            (possibly different for each block row) or NULL.
1864b5df2d14SHong Zhang 
1865b5df2d14SHong Zhang 
1866b5df2d14SHong Zhang    Options Database Keys:
1867b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1868b5df2d14SHong Zhang                      block calculations (much slower)
1869b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1870b5df2d14SHong Zhang 
1871b5df2d14SHong Zhang    Notes:
1872b5df2d14SHong Zhang 
1873b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1874b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1875b5df2d14SHong Zhang 
187649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
187749a6f317SBarry Smith 
1878b5df2d14SHong Zhang    Storage Information:
1879b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1880b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1881b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1882b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1883b5df2d14SHong Zhang 
1884b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1885b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
18860298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
1887b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1888b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1889b5df2d14SHong Zhang 
1890aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1891aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1892aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1893aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1894aa95bbe8SBarry Smith 
1895b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1896b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1897b5df2d14SHong Zhang 
1898b5df2d14SHong Zhang .vb
1899b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1900a4b1a0f6SJed Brown           --------------------------
1901c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
1902c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
1903c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
1904a4b1a0f6SJed Brown           --------------------------
1905b5df2d14SHong Zhang .ve
1906b5df2d14SHong Zhang 
1907b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1908b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19096d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19106d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1911b5df2d14SHong Zhang 
19126d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19136d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1914c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
1915c2fc9fa9SBarry Smith 
1916b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1917b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1918b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1919b5df2d14SHong Zhang    matrices.
1920b5df2d14SHong Zhang 
1921b5df2d14SHong Zhang    Level: intermediate
1922b5df2d14SHong Zhang 
1923b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1924b5df2d14SHong Zhang 
1925ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
1926b5df2d14SHong Zhang @*/
19277087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1928b5df2d14SHong Zhang {
19294ac538c5SBarry Smith   PetscErrorCode ierr;
1930b5df2d14SHong Zhang 
1931b5df2d14SHong Zhang   PetscFunctionBegin;
19326ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
19336ba663aaSJed Brown   PetscValidType(B,1);
19346ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
19354ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1936b5df2d14SHong Zhang   PetscFunctionReturn(0);
1937b5df2d14SHong Zhang }
1938b5df2d14SHong Zhang 
19394a2ae208SSatish Balay #undef __FUNCT__
194069b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
1941a30f8f8cSSatish Balay /*@C
194269b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1943a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1944a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1945a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1946a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1947a30f8f8cSSatish Balay 
1948a30f8f8cSSatish Balay    Collective on MPI_Comm
1949a30f8f8cSSatish Balay 
1950a30f8f8cSSatish Balay    Input Parameters:
1951a30f8f8cSSatish Balay +  comm - MPI communicator
1952a30f8f8cSSatish Balay .  bs   - size of blockk
1953a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1954a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1955a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1956a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1957a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1958a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1959a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1960a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1961a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1962a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1963a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19646d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19650298fd71SBarry Smith            (possibly different for each block block row) or NULL.
196695742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
196795742e49SBarry Smith            set its value even if it is zero.
1968a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1969a30f8f8cSSatish Balay            submatrix (same for all local rows).
1970a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1971a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
19720298fd71SBarry Smith            each block row) or NULL.
1973a30f8f8cSSatish Balay 
1974a30f8f8cSSatish Balay    Output Parameter:
1975a30f8f8cSSatish Balay .  A - the matrix
1976a30f8f8cSSatish Balay 
1977a30f8f8cSSatish Balay    Options Database Keys:
1978a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1979a30f8f8cSSatish Balay                      block calculations (much slower)
1980a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1981a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1982a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1983a30f8f8cSSatish Balay 
1984175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1985ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1986175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1987175b88e8SBarry Smith 
1988a30f8f8cSSatish Balay    Notes:
1989d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19906d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1991d1be2dadSMatthew Knepley 
1992a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1993a30f8f8cSSatish Balay    (possibly both).
1994a30f8f8cSSatish Balay 
1995a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1996a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1997a30f8f8cSSatish Balay 
199849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
199949a6f317SBarry Smith 
2000a30f8f8cSSatish Balay    Storage Information:
2001a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2002a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2003a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2004a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2005a30f8f8cSSatish Balay 
2006a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2007a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
20080298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2009a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2010a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2011a30f8f8cSSatish Balay 
2012a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2013a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2014a30f8f8cSSatish Balay 
2015a30f8f8cSSatish Balay .vb
2016a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2017a4b1a0f6SJed Brown           --------------------------
2018c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2019c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2020c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2021a4b1a0f6SJed Brown           --------------------------
2022a30f8f8cSSatish Balay .ve
2023a30f8f8cSSatish Balay 
2024a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2025a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20266d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20276d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2028a30f8f8cSSatish Balay 
20296d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20306d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2031a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2032a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2033a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2034a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2035a30f8f8cSSatish Balay    matrices.
2036a30f8f8cSSatish Balay 
2037a30f8f8cSSatish Balay    Level: intermediate
2038a30f8f8cSSatish Balay 
2039a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2040a30f8f8cSSatish Balay 
204169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2042a30f8f8cSSatish Balay @*/
2043a30f8f8cSSatish Balay 
204469b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2045a30f8f8cSSatish Balay {
20466849ba73SBarry Smith   PetscErrorCode ierr;
20471302d50aSBarry Smith   PetscMPIInt    size;
2048a30f8f8cSSatish Balay 
2049a30f8f8cSSatish Balay   PetscFunctionBegin;
2050f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2051f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2052273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2053273d9f13SBarry Smith   if (size > 1) {
2054b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2055b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2056273d9f13SBarry Smith   } else {
2057273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2058273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2059273d9f13SBarry Smith   }
2060a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2061a30f8f8cSSatish Balay }
2062a30f8f8cSSatish Balay 
2063a30f8f8cSSatish Balay 
20644a2ae208SSatish Balay #undef __FUNCT__
20654a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20666849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2067a30f8f8cSSatish Balay {
2068a30f8f8cSSatish Balay   Mat            mat;
2069a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2070dfbe8321SBarry Smith   PetscErrorCode ierr;
2071d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2072387bc808SHong Zhang   PetscScalar    *array;
2073a30f8f8cSSatish Balay 
2074a30f8f8cSSatish Balay   PetscFunctionBegin;
2075a30f8f8cSSatish Balay   *newmat = 0;
207626fbe8dcSKarl Rupp 
2077ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2078d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20797adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20801d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
20811e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
20821e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2083e1b6402fSHong Zhang 
2084d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2085273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
208682327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20877fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20887fff6886SHong Zhang 
2089b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2090a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2091a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2092a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2093a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2094a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2095a30f8f8cSSatish Balay 
2096899cda47SBarry Smith 
2097a30f8f8cSSatish Balay   a->size         = oldmat->size;
2098a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2099a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2100a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2101a30f8f8cSSatish Balay   a->rowindices   = 0;
2102a30f8f8cSSatish Balay   a->rowvalues    = 0;
2103a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2104a30f8f8cSSatish Balay   a->barray       = 0;
2105899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2106899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2107899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2108899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2109a30f8f8cSSatish Balay 
2110a30f8f8cSSatish Balay   /* hash table stuff */
2111a30f8f8cSSatish Balay   a->ht           = 0;
2112a30f8f8cSSatish Balay   a->hd           = 0;
2113a30f8f8cSSatish Balay   a->ht_size      = 0;
2114a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2115a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2116a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2117a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2118a30f8f8cSSatish Balay 
2119899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2120a30f8f8cSSatish Balay   if (oldmat->colmap) {
2121a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2122a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2123a30f8f8cSSatish Balay #else
2124785e854fSJed Brown     ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr);
21253bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21261302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2127a30f8f8cSSatish Balay #endif
2128a30f8f8cSSatish Balay   } else a->colmap = 0;
2129387bc808SHong Zhang 
2130a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2131785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
21323bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21331302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2134a30f8f8cSSatish Balay   } else a->garray = 0;
2135a30f8f8cSSatish Balay 
2136ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2137a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
21383bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2139a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
21403bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
214182327fa8SHong Zhang 
214282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
21433bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
214482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
21453bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2146387bc808SHong Zhang 
2147387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21481ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2149778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2150778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21511ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21521ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2153778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21541ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
21553bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
21563bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
21573bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
21583bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
21593bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2160387bc808SHong Zhang 
2161387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2162387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2163387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
21643bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
216582327fa8SHong Zhang 
2166a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
21673bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2168a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
21693bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2170140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2171a30f8f8cSSatish Balay   *newmat = mat;
2172a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2173a30f8f8cSSatish Balay }
2174a30f8f8cSSatish Balay 
21754a2ae208SSatish Balay #undef __FUNCT__
21765bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2177112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
217895936485SShri Abhyankar {
217995936485SShri Abhyankar   PetscErrorCode ierr;
218095936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
218195936485SShri Abhyankar   PetscScalar    *vals,*buf;
2182ce94432eSBarry Smith   MPI_Comm       comm;
218395936485SShri Abhyankar   MPI_Status     status;
2184adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2185adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
218695936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21873059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
218895936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2189*461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
219095936485SShri Abhyankar   int            fd;
219195936485SShri Abhyankar 
219295936485SShri Abhyankar   PetscFunctionBegin;
2193ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
21940298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21950298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
219695936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
21973059b6faSBarry Smith   if (bs < 0) bs = 1;
219895936485SShri Abhyankar 
219995936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
220095936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
220195936485SShri Abhyankar   if (!rank) {
220295936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
220395936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
220495936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
220595936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
220695936485SShri Abhyankar   }
220795936485SShri Abhyankar 
220895936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
220926fbe8dcSKarl Rupp   M    = header[1];
221026fbe8dcSKarl Rupp   N    = header[2];
221195936485SShri Abhyankar 
221295936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2213*461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2214*461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
221595936485SShri Abhyankar 
221695936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
221795936485SShri Abhyankar 
221895936485SShri Abhyankar   /*
221995936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
222095936485SShri Abhyankar      divisible by the blocksize
222195936485SShri Abhyankar   */
222295936485SShri Abhyankar   Mbs        = M/bs;
222395936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
222495936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
222595936485SShri Abhyankar   else                  Mbs++;
222695936485SShri Abhyankar   if (extra_rows &&!rank) {
222795936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
222895936485SShri Abhyankar   }
222995936485SShri Abhyankar 
223095936485SShri Abhyankar   /* determine ownership of all rows */
223195936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
223295936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
223395936485SShri Abhyankar     m   = mbs*bs;
223495936485SShri Abhyankar   } else { /* User Set */
223595936485SShri Abhyankar     m   = newmat->rmap->n;
223695936485SShri Abhyankar     mbs = m/bs;
223795936485SShri Abhyankar   }
2238dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
22394dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
224095936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
224195936485SShri Abhyankar   rowners[0] = 0;
224295936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
224395936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
224495936485SShri Abhyankar   rstart = rowners[rank];
224595936485SShri Abhyankar   rend   = rowners[rank+1];
224695936485SShri Abhyankar 
224795936485SShri Abhyankar   /* distribute row lengths to all processors */
2248785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
224995936485SShri Abhyankar   if (!rank) {
2250785e854fSJed Brown     ierr = PetscMalloc1((M+extra_rows),&rowlengths);CHKERRQ(ierr);
225195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
225295936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2253785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
225495936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
225595936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
225695936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
225795936485SShri Abhyankar   } else {
225895936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
225995936485SShri Abhyankar   }
226095936485SShri Abhyankar 
226195936485SShri Abhyankar   if (!rank) {   /* procs[0] */
226295936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2263785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
226495936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
226595936485SShri Abhyankar     for (i=0; i<size; i++) {
226695936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
226795936485SShri Abhyankar         procsnz[i] += rowlengths[j];
226895936485SShri Abhyankar       }
226995936485SShri Abhyankar     }
227095936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
227195936485SShri Abhyankar 
227295936485SShri Abhyankar     /* determine max buffer needed and allocate it */
227395936485SShri Abhyankar     maxnz = 0;
227495936485SShri Abhyankar     for (i=0; i<size; i++) {
227595936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
227695936485SShri Abhyankar     }
2277785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
227895936485SShri Abhyankar 
227995936485SShri Abhyankar     /* read in my part of the matrix column indices  */
228095936485SShri Abhyankar     nz     = procsnz[0];
2281785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
228295936485SShri Abhyankar     mycols = ibuf;
228395936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
228495936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
228526fbe8dcSKarl Rupp     if (size == 1) {
228626fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
228726fbe8dcSKarl Rupp     }
228895936485SShri Abhyankar 
228995936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
229095936485SShri Abhyankar     for (i=1; i<size-1; i++) {
229195936485SShri Abhyankar       nz   = procsnz[i];
229295936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
229395936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
229495936485SShri Abhyankar     }
229595936485SShri Abhyankar     /* read in the stuff for the last proc */
229695936485SShri Abhyankar     if (size != 1) {
229795936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
229895936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
229995936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
230095936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
230195936485SShri Abhyankar     }
230295936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
230395936485SShri Abhyankar   } else {  /* procs[i], i>0 */
230495936485SShri Abhyankar     /* determine buffer space needed for message */
230595936485SShri Abhyankar     nz = 0;
230626fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2307785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
230895936485SShri Abhyankar     mycols = ibuf;
230995936485SShri Abhyankar     /* receive message of column indices*/
231095936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
231195936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
231295936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
231395936485SShri Abhyankar   }
231495936485SShri Abhyankar 
231595936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2316dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2317dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
231895936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
231995936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
232095936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
232195936485SShri Abhyankar   rowcount = 0;
232295936485SShri Abhyankar   nzcount  = 0;
232395936485SShri Abhyankar   for (i=0; i<mbs; i++) {
232495936485SShri Abhyankar     dcount  = 0;
232595936485SShri Abhyankar     odcount = 0;
232695936485SShri Abhyankar     for (j=0; j<bs; j++) {
232795936485SShri Abhyankar       kmax = locrowlens[rowcount];
232895936485SShri Abhyankar       for (k=0; k<kmax; k++) {
232995936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
233095936485SShri Abhyankar         if (!mask[tmp]) {
233195936485SShri Abhyankar           mask[tmp] = 1;
233295936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
233395936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
233495936485SShri Abhyankar         }
233595936485SShri Abhyankar       }
233695936485SShri Abhyankar       rowcount++;
233795936485SShri Abhyankar     }
233895936485SShri Abhyankar 
233995936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
234095936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
234195936485SShri Abhyankar 
234295936485SShri Abhyankar     /* zero out the mask elements we set */
234395936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
234495936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
234595936485SShri Abhyankar   }
234695936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
234795936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
23486816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
234995936485SShri Abhyankar 
235095936485SShri Abhyankar   if (!rank) {
2351785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
235295936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
235395936485SShri Abhyankar     nz     = procsnz[0];
235495936485SShri Abhyankar     vals   = buf;
235595936485SShri Abhyankar     mycols = ibuf;
235695936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
235795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
235826fbe8dcSKarl Rupp     if (size == 1) {
235926fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
236026fbe8dcSKarl Rupp     }
236195936485SShri Abhyankar 
236295936485SShri Abhyankar     /* insert into matrix */
236395936485SShri Abhyankar     jj = rstart*bs;
236495936485SShri Abhyankar     for (i=0; i<m; i++) {
236595936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
236695936485SShri Abhyankar       mycols += locrowlens[i];
236795936485SShri Abhyankar       vals   += locrowlens[i];
236895936485SShri Abhyankar       jj++;
236995936485SShri Abhyankar     }
237095936485SShri Abhyankar 
237195936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
237295936485SShri Abhyankar     for (i=1; i<size-1; i++) {
237395936485SShri Abhyankar       nz   = procsnz[i];
237495936485SShri Abhyankar       vals = buf;
237595936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
237695936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
237795936485SShri Abhyankar     }
237895936485SShri Abhyankar     /* the last proc */
237995936485SShri Abhyankar     if (size != 1) {
238095936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
238195936485SShri Abhyankar       vals = buf;
238295936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
238395936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
238495936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
238595936485SShri Abhyankar     }
238695936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
238795936485SShri Abhyankar 
238895936485SShri Abhyankar   } else {
238995936485SShri Abhyankar     /* receive numeric values */
2390785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
239195936485SShri Abhyankar 
239295936485SShri Abhyankar     /* receive message of values*/
239395936485SShri Abhyankar     vals   = buf;
239495936485SShri Abhyankar     mycols = ibuf;
239595936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
239695936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
239795936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
239895936485SShri Abhyankar 
239995936485SShri Abhyankar     /* insert into matrix */
240095936485SShri Abhyankar     jj = rstart*bs;
240195936485SShri Abhyankar     for (i=0; i<m; i++) {
240295936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
240395936485SShri Abhyankar       mycols += locrowlens[i];
240495936485SShri Abhyankar       vals   += locrowlens[i];
240595936485SShri Abhyankar       jj++;
240695936485SShri Abhyankar     }
240795936485SShri Abhyankar   }
240895936485SShri Abhyankar 
240995936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
241095936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
241195936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
241295936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
241395936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
241495936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
241595936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
241695936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
241795936485SShri Abhyankar   PetscFunctionReturn(0);
241895936485SShri Abhyankar }
241995936485SShri Abhyankar 
242095936485SShri Abhyankar #undef __FUNCT__
24214a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2422dcf5cc72SBarry Smith /*XXXXX@
2423a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2424a30f8f8cSSatish Balay 
2425a30f8f8cSSatish Balay    Input Parameters:
2426a30f8f8cSSatish Balay .  mat  - the matrix
2427a30f8f8cSSatish Balay .  fact - factor
2428a30f8f8cSSatish Balay 
2429c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2430a30f8f8cSSatish Balay 
2431a30f8f8cSSatish Balay    Level: advanced
2432a30f8f8cSSatish Balay 
2433a30f8f8cSSatish Balay   Notes:
2434a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2435a30f8f8cSSatish Balay 
2436a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2437a30f8f8cSSatish Balay 
2438a30f8f8cSSatish Balay .seealso: MatSetOption()
2439dcf5cc72SBarry Smith @XXXXX*/
2440dcf5cc72SBarry Smith 
244124d5174aSHong Zhang 
24424a2ae208SSatish Balay #undef __FUNCT__
2443985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2444985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
244524d5174aSHong Zhang {
244624d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2447f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2448ca54ac64SHong Zhang   PetscReal      atmp;
244987828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2450dfbe8321SBarry Smith   PetscErrorCode ierr;
24511302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24521302d50aSBarry Smith   PetscMPIInt    rank,size;
24531302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
245487828ca2SBarry Smith   PetscScalar    *va;
24558a1c53f2SBarry Smith   MatScalar      *ba;
2456f4c0e9e4SHong Zhang   MPI_Status     stat;
245724d5174aSHong Zhang 
245824d5174aSHong Zhang   PetscFunctionBegin;
2459e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
24600298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
24611ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2462f4c0e9e4SHong Zhang 
2463ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2464ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2465f4c0e9e4SHong Zhang 
2466d0f46423SBarry Smith   bs  = A->rmap->bs;
2467f4c0e9e4SHong Zhang   mbs = a->mbs;
2468f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2469f4c0e9e4SHong Zhang   ba  = b->a;
2470f4c0e9e4SHong Zhang   bi  = b->i;
2471f4c0e9e4SHong Zhang   bj  = b->j;
2472f4c0e9e4SHong Zhang 
2473f4c0e9e4SHong Zhang   /* find ownerships */
2474d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2475f4c0e9e4SHong Zhang 
2476f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2477785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2478ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2479f4c0e9e4SHong Zhang 
2480f4c0e9e4SHong Zhang   /* row_max for B */
2481b8475685SHong Zhang   if (rank != size-1) {
2482f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2483f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2484f4c0e9e4SHong Zhang       brow  = bs*i;
2485f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2486f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2487f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2488ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
248904d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2490f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2491f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2492ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2493ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2494f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2495f4c0e9e4SHong Zhang           }
2496f4c0e9e4SHong Zhang         }
2497f4c0e9e4SHong Zhang         bj++;
2498f4c0e9e4SHong Zhang       }
2499f4c0e9e4SHong Zhang     }
2500f4c0e9e4SHong Zhang 
2501f4c0e9e4SHong Zhang     /* send values to its owners */
2502f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2503f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2504ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2505ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2506ca54ac64SHong Zhang     }
2507f4c0e9e4SHong Zhang   }
2508f4c0e9e4SHong Zhang 
2509f4c0e9e4SHong Zhang   /* receive values */
2510ca54ac64SHong Zhang   if (rank) {
2511f4c0e9e4SHong Zhang     rvalues = work;
2512ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2513f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2514ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2515f4c0e9e4SHong Zhang       /* process values */
2516f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2517ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2518f4c0e9e4SHong Zhang       }
2519f4c0e9e4SHong Zhang     }
2520ca54ac64SHong Zhang   }
2521f4c0e9e4SHong Zhang 
25221ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2523ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
252424d5174aSHong Zhang   PetscFunctionReturn(0);
252524d5174aSHong Zhang }
25262798e883SHong Zhang 
25272798e883SHong Zhang #undef __FUNCT__
252841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
252941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25302798e883SHong Zhang {
25312798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2532dfbe8321SBarry Smith   PetscErrorCode    ierr;
2533d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25343649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2535ffe4fb16SHong Zhang   Vec               bb1;
25363649974fSBarry Smith   const PetscScalar *b;
2537ffe4fb16SHong Zhang 
2538ffe4fb16SHong Zhang   PetscFunctionBegin;
2539e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2540e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2541ffe4fb16SHong Zhang 
2542a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
254341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2544a2b30743SBarry Smith     PetscFunctionReturn(0);
2545a2b30743SBarry Smith   }
2546a2b30743SBarry Smith 
2547ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2548ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
254941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2550ffe4fb16SHong Zhang       its--;
2551ffe4fb16SHong Zhang     }
2552ffe4fb16SHong Zhang 
2553ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2554ffe4fb16SHong Zhang     while (its--) {
2555ffe4fb16SHong Zhang 
2556ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2557ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2558ffe4fb16SHong Zhang 
2559ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25601ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25611ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2562ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25631ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2564ffe4fb16SHong Zhang 
2565efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2566ffe4fb16SHong Zhang 
2567ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25681ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25693649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2570ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25711ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2572ffe4fb16SHong Zhang 
2573ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2574fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2575ffe4fb16SHong Zhang 
2576ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25771ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2578a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2579ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2580ffe4fb16SHong Zhang 
2581ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2582ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2583ffe4fb16SHong Zhang 
2584ffe4fb16SHong Zhang       /* local diagonal sweep */
258541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2586ffe4fb16SHong Zhang     }
25876bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2588fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
258941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2590fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
259141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2592fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2593fa22f6d0SBarry Smith     Vec               xx1;
2594ace3abfcSBarry Smith     PetscBool         hasop;
259520f1ed55SBarry Smith     const PetscScalar *diag;
2596887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
259720f1ed55SBarry Smith     PetscInt          i,n;
2598fa22f6d0SBarry Smith 
2599fa22f6d0SBarry Smith     if (!mat->xx1) {
2600fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2601fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2602fa22f6d0SBarry Smith     }
2603fa22f6d0SBarry Smith     xx1 = mat->xx1;
2604fa22f6d0SBarry Smith     bb1 = mat->bb1;
2605fa22f6d0SBarry Smith 
260641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2607fa22f6d0SBarry Smith 
2608fa22f6d0SBarry Smith     if (!mat->diag) {
2609effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26100298fd71SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2611fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2612fa22f6d0SBarry Smith     }
2613fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2614fa22f6d0SBarry Smith 
2615fa22f6d0SBarry Smith     if (hasop) {
2616fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2617887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
261820f1ed55SBarry Smith     } else {
261920f1ed55SBarry Smith       /*
262020f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
262120f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2622887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
262320f1ed55SBarry Smith       */
262420f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26253649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26263649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
262720f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
262820f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2629887ee2caSBarry Smith       if (omega == 1.0) {
263026fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
263120f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2632887ee2caSBarry Smith       } else {
263326fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2634887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2635887ee2caSBarry Smith       }
263620f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26373649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26383649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
263920f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
264020f1ed55SBarry Smith     }
2641fa22f6d0SBarry Smith 
2642fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2643fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2644fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2645fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2646fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2647fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2648fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2649fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2650fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2651fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2652effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2653fa22f6d0SBarry Smith 
2654fa22f6d0SBarry Smith     /* local sweep */
265541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2656fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2657f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2658ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2659ffe4fb16SHong Zhang }
2660ffe4fb16SHong Zhang 
2661ffe4fb16SHong Zhang #undef __FUNCT__
266241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
266341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2664ffe4fb16SHong Zhang {
2665ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2666dfbe8321SBarry Smith   PetscErrorCode ierr;
26672798e883SHong Zhang   Vec            lvec1,bb1;
26682798e883SHong Zhang 
26692798e883SHong Zhang   PetscFunctionBegin;
2670e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2671e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26722798e883SHong Zhang 
2673c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
26742798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
267541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26762798e883SHong Zhang       its--;
26772798e883SHong Zhang     }
26782798e883SHong Zhang 
26792798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26802798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26812798e883SHong Zhang     while (its--) {
2682ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26832798e883SHong Zhang 
26842798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26852798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2686efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26872798e883SHong Zhang 
2688ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26892798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2690ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26912798e883SHong Zhang 
26922798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2693efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26942798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26952798e883SHong Zhang 
2696ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26972798e883SHong Zhang 
2698c14dc6b6SHong Zhang       /* diagonal sweep */
269941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27002798e883SHong Zhang     }
27016bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27026bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27036bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27042798e883SHong Zhang   PetscFunctionReturn(0);
27052798e883SHong Zhang }
27062798e883SHong Zhang 
2707dfb205c3SBarry Smith #undef __FUNCT__
2708dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2709dfb205c3SBarry Smith /*@
2710dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2711dfb205c3SBarry Smith          CSR format the local rows.
2712dfb205c3SBarry Smith 
2713dfb205c3SBarry Smith    Collective on MPI_Comm
2714dfb205c3SBarry Smith 
2715dfb205c3SBarry Smith    Input Parameters:
2716dfb205c3SBarry Smith +  comm - MPI communicator
2717dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2718dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2719dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2720dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2721dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2722dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2723dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2724dfb205c3SBarry Smith .   i - row indices
2725dfb205c3SBarry Smith .   j - column indices
2726dfb205c3SBarry Smith -   a - matrix values
2727dfb205c3SBarry Smith 
2728dfb205c3SBarry Smith    Output Parameter:
2729dfb205c3SBarry Smith .   mat - the matrix
2730dfb205c3SBarry Smith 
2731dfb205c3SBarry Smith    Level: intermediate
2732dfb205c3SBarry Smith 
2733dfb205c3SBarry Smith    Notes:
2734dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2735dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2736dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2737dfb205c3SBarry Smith 
2738dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2739dfb205c3SBarry Smith 
2740dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2741dfb205c3SBarry Smith 
2742dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
274369b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2744dfb205c3SBarry Smith @*/
27457087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2746dfb205c3SBarry Smith {
2747dfb205c3SBarry Smith   PetscErrorCode ierr;
2748dfb205c3SBarry Smith 
2749dfb205c3SBarry Smith 
2750dfb205c3SBarry Smith   PetscFunctionBegin;
2751f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2752dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2753dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2754dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2755dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2756dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2757dfb205c3SBarry Smith   PetscFunctionReturn(0);
2758dfb205c3SBarry Smith }
2759dfb205c3SBarry Smith 
2760dfb205c3SBarry Smith 
2761dfb205c3SBarry Smith #undef __FUNCT__
2762dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2763dfb205c3SBarry Smith /*@C
2764dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2765dfb205c3SBarry Smith    (the default parallel PETSc format).
2766dfb205c3SBarry Smith 
2767dfb205c3SBarry Smith    Collective on MPI_Comm
2768dfb205c3SBarry Smith 
2769dfb205c3SBarry Smith    Input Parameters:
27701c4f3114SJed Brown +  B - the matrix
2771dfb205c3SBarry Smith .  bs - the block size
2772dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2773dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2774dfb205c3SBarry Smith -  v - optional values in the matrix
2775dfb205c3SBarry Smith 
2776dfb205c3SBarry Smith    Level: developer
2777dfb205c3SBarry Smith 
2778dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2779dfb205c3SBarry Smith 
278069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2781dfb205c3SBarry Smith @*/
27827087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2783dfb205c3SBarry Smith {
27844ac538c5SBarry Smith   PetscErrorCode ierr;
2785dfb205c3SBarry Smith 
2786dfb205c3SBarry Smith   PetscFunctionBegin;
27874ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2788dfb205c3SBarry Smith   PetscFunctionReturn(0);
2789dfb205c3SBarry Smith }
2790dfb205c3SBarry Smith 
2791dfb205c3SBarry Smith 
2792