xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 48a46eb9bd028bec07ec0f396b1a3abb43f14558)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
96214f412SHong Zhang #endif
10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
12d24d4204SJose E. Roman #endif
13b147fbf3SStefano Zampini 
14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
159371c9d4SSatish Balay static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) {
16b147fbf3SStefano Zampini   Mat       preallocator;
17b147fbf3SStefano Zampini   PetscInt  r, rstart, rend;
18b147fbf3SStefano Zampini   PetscInt  bs, i, m, n, M, N;
19b147fbf3SStefano Zampini   PetscBool cong = PETSC_TRUE;
20b147fbf3SStefano Zampini 
21b147fbf3SStefano Zampini   PetscFunctionBegin;
22b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
23b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B, nm, 2);
24b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
25b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
269566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
275f80ce2aSJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
28b147fbf3SStefano Zampini   }
29b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B, fill, 5);
309566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B, &bs));
319566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &M, &N));
329566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B, &m, &n));
339566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
349566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
359566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator, bs));
369566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, m, n, M, N));
379566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
389566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
39b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
40b147fbf3SStefano Zampini     PetscInt           ncols;
41b147fbf3SStefano Zampini     const PetscInt    *row;
42b147fbf3SStefano Zampini     const PetscScalar *vals;
43b147fbf3SStefano Zampini 
44b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
459566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
469566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
47*48a46eb9SPierre Jolivet       if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
489566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
49b147fbf3SStefano Zampini     }
50b147fbf3SStefano Zampini   }
519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
539566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
549566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
55b147fbf3SStefano Zampini   PetscFunctionReturn(0);
56b147fbf3SStefano Zampini }
57b147fbf3SStefano Zampini 
589371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) {
59b147fbf3SStefano Zampini   Mat      B;
60b147fbf3SStefano Zampini   PetscInt r;
61b147fbf3SStefano Zampini 
62b147fbf3SStefano Zampini   PetscFunctionBegin;
63b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
6428d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE, isdense;
65b147fbf3SStefano Zampini     PetscInt  bs;
66b147fbf3SStefano Zampini 
679566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
689566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
699566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, newtype));
709566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A, &bs));
719566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B, bs));
729566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
739566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
749566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
7528d58a37SPierre Jolivet     if (!isdense) {
769566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
779566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
789566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
7928d58a37SPierre Jolivet     } else {
809566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
8128d58a37SPierre Jolivet     }
8228d58a37SPierre Jolivet   } else {
8328d58a37SPierre Jolivet     B = *newmat;
849566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
8528d58a37SPierre Jolivet   }
86b147fbf3SStefano Zampini 
879566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
88b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
89b147fbf3SStefano Zampini     PetscInt           ncols;
90b147fbf3SStefano Zampini     const PetscInt    *row;
91b147fbf3SStefano Zampini     const PetscScalar *vals;
92b147fbf3SStefano Zampini 
939566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
949566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
95eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
96b94d7dedSBarry Smith     if (A->hermitian == PETSC_BOOL3_TRUE) {
97eb1ec7c1SStefano Zampini       PetscInt i;
98*48a46eb9SPierre Jolivet       for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
99eb1ec7c1SStefano Zampini     } else {
1009566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
101eb1ec7c1SStefano Zampini     }
102eb1ec7c1SStefano Zampini #else
1039566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
104eb1ec7c1SStefano Zampini #endif
1059566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
106b147fbf3SStefano Zampini   }
1079566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
110b147fbf3SStefano Zampini 
111b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1129566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
113b147fbf3SStefano Zampini   } else {
114b147fbf3SStefano Zampini     *newmat = B;
115b147fbf3SStefano Zampini   }
116b147fbf3SStefano Zampini   PetscFunctionReturn(0);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini 
1199371c9d4SSatish Balay PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) {
120f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
121a30f8f8cSSatish Balay 
122a30f8f8cSSatish Balay   PetscFunctionBegin;
1239566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1249566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
125a30f8f8cSSatish Balay   PetscFunctionReturn(0);
126a30f8f8cSSatish Balay }
127a30f8f8cSSatish Balay 
1289371c9d4SSatish Balay PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) {
129f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   PetscFunctionBegin;
1329566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1339566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
134a30f8f8cSSatish Balay   PetscFunctionReturn(0);
135a30f8f8cSSatish Balay }
136a30f8f8cSSatish Balay 
137d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
138a30f8f8cSSatish Balay   { \
139a30f8f8cSSatish Balay     brow = row / bs; \
1409371c9d4SSatish Balay     rp   = aj + ai[brow]; \
1419371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
1429371c9d4SSatish Balay     rmax = aimax[brow]; \
1439371c9d4SSatish Balay     nrow = ailen[brow]; \
144a30f8f8cSSatish Balay     bcol = col / bs; \
1459371c9d4SSatish Balay     ridx = row % bs; \
1469371c9d4SSatish Balay     cidx = col % bs; \
1479371c9d4SSatish Balay     low  = 0; \
1489371c9d4SSatish Balay     high = nrow; \
149a30f8f8cSSatish Balay     while (high - low > 3) { \
150a30f8f8cSSatish Balay       t = (low + high) / 2; \
151a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
152a30f8f8cSSatish Balay       else low = t; \
153a30f8f8cSSatish Balay     } \
154a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
155a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
156a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
157a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
158a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
159a30f8f8cSSatish Balay         else *bap = value; \
160a30f8f8cSSatish Balay         goto a_noinsert; \
161a30f8f8cSSatish Balay       } \
162a30f8f8cSSatish Balay     } \
163a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
1645f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
165fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
166a30f8f8cSSatish Balay     N = nrow++ - 1; \
167a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
1689566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1699566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1709566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
171a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
172a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
173e56f5c9eSBarry Smith     A->nonzerostate++; \
174a30f8f8cSSatish Balay   a_noinsert:; \
175a30f8f8cSSatish Balay     ailen[brow] = nrow; \
176a30f8f8cSSatish Balay   }
177e5e170daSBarry Smith 
178d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
179a30f8f8cSSatish Balay   { \
180a30f8f8cSSatish Balay     brow = row / bs; \
1819371c9d4SSatish Balay     rp   = bj + bi[brow]; \
1829371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
1839371c9d4SSatish Balay     rmax = bimax[brow]; \
1849371c9d4SSatish Balay     nrow = bilen[brow]; \
185a30f8f8cSSatish Balay     bcol = col / bs; \
1869371c9d4SSatish Balay     ridx = row % bs; \
1879371c9d4SSatish Balay     cidx = col % bs; \
1889371c9d4SSatish Balay     low  = 0; \
1899371c9d4SSatish Balay     high = nrow; \
190a30f8f8cSSatish Balay     while (high - low > 3) { \
191a30f8f8cSSatish Balay       t = (low + high) / 2; \
192a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
193a30f8f8cSSatish Balay       else low = t; \
194a30f8f8cSSatish Balay     } \
195a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
196a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
197a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
198a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
199a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
200a30f8f8cSSatish Balay         else *bap = value; \
201a30f8f8cSSatish Balay         goto b_noinsert; \
202a30f8f8cSSatish Balay       } \
203a30f8f8cSSatish Balay     } \
204a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2055f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
206fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
207a30f8f8cSSatish Balay     N = nrow++ - 1; \
208a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2099566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2109566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2119566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
212a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
213a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
214e56f5c9eSBarry Smith     B->nonzerostate++; \
215a30f8f8cSSatish Balay   b_noinsert:; \
216a30f8f8cSSatish Balay     bilen[brow] = nrow; \
217a30f8f8cSSatish Balay   }
218a30f8f8cSSatish Balay 
219a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
220476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
221a30f8f8cSSatish Balay */
2229371c9d4SSatish Balay PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) {
223a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
224a30f8f8cSSatish Balay   MatScalar     value;
225ace3abfcSBarry Smith   PetscBool     roworiented = baij->roworiented;
2261302d50aSBarry Smith   PetscInt      i, j, row, col;
227d0f46423SBarry Smith   PetscInt      rstart_orig = mat->rmap->rstart;
228d0f46423SBarry Smith   PetscInt      rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
229d0f46423SBarry Smith   PetscInt      cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
230a30f8f8cSSatish Balay 
231a30f8f8cSSatish Balay   /* Some Variables required in the macro */
232a30f8f8cSSatish Balay   Mat           A     = baij->A;
233a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a     = (Mat_SeqSBAIJ *)(A)->data;
2341302d50aSBarry Smith   PetscInt     *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
235a30f8f8cSSatish Balay   MatScalar    *aa = a->a;
236a30f8f8cSSatish Balay 
237a30f8f8cSSatish Balay   Mat          B     = baij->B;
238a30f8f8cSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
2391302d50aSBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
240a30f8f8cSSatish Balay   MatScalar   *ba = b->a;
241a30f8f8cSSatish Balay 
2421302d50aSBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
2431302d50aSBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
244a30f8f8cSSatish Balay   MatScalar *ap, *bap;
245a30f8f8cSSatish Balay 
246a30f8f8cSSatish Balay   /* for stash */
2470298fd71SBarry Smith   PetscInt   n_loc, *in_loc = NULL;
2480298fd71SBarry Smith   MatScalar *v_loc = NULL;
249a30f8f8cSSatish Balay 
250a30f8f8cSSatish Balay   PetscFunctionBegin;
251a30f8f8cSSatish Balay   if (!baij->donotstash) {
25259ffdab8SBarry Smith     if (n > baij->n_loc) {
2539566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
2549566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
2559566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->in_loc));
2569566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->v_loc));
25726fbe8dcSKarl Rupp 
25859ffdab8SBarry Smith       baij->n_loc = n;
25959ffdab8SBarry Smith     }
26059ffdab8SBarry Smith     in_loc = baij->in_loc;
26159ffdab8SBarry Smith     v_loc  = baij->v_loc;
262a30f8f8cSSatish Balay   }
263a30f8f8cSSatish Balay 
264a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
265a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2665f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
267a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
268a30f8f8cSSatish Balay       row = im[i] - rstart_orig;                     /* local row index */
269a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
27001b2bd88SHong Zhang         if (im[i] / bs > in[j] / bs) {
27101b2bd88SHong Zhang           if (a->ignore_ltriangular) {
27201b2bd88SHong Zhang             continue; /* ignore lower triangular blocks */
27326fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
27401b2bd88SHong Zhang         }
275a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
276a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;                    /* local col index */
2779371c9d4SSatish Balay           brow = row / bs;
2789371c9d4SSatish Balay           bcol = col / bs;
279a30f8f8cSSatish Balay           if (brow > bcol) continue; /* ignore lower triangular blocks of A */
280db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
281db4deed7SKarl Rupp           else value = v[i + j * m];
282d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
2839566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
284f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
285f7d195e4SLawrence Mitchell           continue;
286f7d195e4SLawrence Mitchell         } else {
287f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
288f7d195e4SLawrence Mitchell           /* off-diag entry (B) */
289a30f8f8cSSatish Balay           if (mat->was_assembled) {
290*48a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
291a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2929566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap, in[j] / bs + 1, &col));
29371730473SSatish Balay             col = col - 1;
294a30f8f8cSSatish Balay #else
29571730473SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
296a30f8f8cSSatish Balay #endif
297a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ *)(baij->A->data))->nonew) {
2989566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
299a30f8f8cSSatish Balay               col   = in[j];
300a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
301a30f8f8cSSatish Balay               B     = baij->B;
302a30f8f8cSSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
3039371c9d4SSatish Balay               bimax = b->imax;
3049371c9d4SSatish Balay               bi    = b->i;
3059371c9d4SSatish Balay               bilen = b->ilen;
3069371c9d4SSatish Balay               bj    = b->j;
307a30f8f8cSSatish Balay               ba    = b->a;
30871730473SSatish Balay             } else col += in[j] % bs;
309a30f8f8cSSatish Balay           } else col = in[j];
310db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
311db4deed7SKarl Rupp           else value = v[i + j * m];
312d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3139566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
314a30f8f8cSSatish Balay         }
315a30f8f8cSSatish Balay       }
316a30f8f8cSSatish Balay     } else { /* off processor entry */
3175f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
318a30f8f8cSSatish Balay       if (!baij->donotstash) {
3195080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
320a30f8f8cSSatish Balay         n_loc          = 0;
321a30f8f8cSSatish Balay         for (j = 0; j < n; j++) {
322f65c83cfSHong Zhang           if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
323a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
324a30f8f8cSSatish Balay           if (roworiented) {
325a30f8f8cSSatish Balay             v_loc[n_loc] = v[i * n + j];
326a30f8f8cSSatish Balay           } else {
327a30f8f8cSSatish Balay             v_loc[n_loc] = v[j * m + i];
328a30f8f8cSSatish Balay           }
329a30f8f8cSSatish Balay           n_loc++;
330a30f8f8cSSatish Balay         }
3319566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
332a30f8f8cSSatish Balay       }
333a30f8f8cSSatish Balay     }
334a30f8f8cSSatish Balay   }
335a30f8f8cSSatish Balay   PetscFunctionReturn(0);
336a30f8f8cSSatish Balay }
337a30f8f8cSSatish Balay 
3389371c9d4SSatish Balay static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) {
33936bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
34036bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
34136bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
34236bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
34336bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
34436bd2089SBarry Smith   const PetscScalar *value       = v;
34536bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
34636bd2089SBarry Smith 
34736bd2089SBarry Smith   PetscFunctionBegin;
34836bd2089SBarry Smith   if (col < row) {
34936bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
35036bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
35136bd2089SBarry Smith   }
35236bd2089SBarry Smith   rp    = aj + ai[row];
35336bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
35436bd2089SBarry Smith   rmax  = imax[row];
35536bd2089SBarry Smith   nrow  = ailen[row];
35636bd2089SBarry Smith   value = v;
35736bd2089SBarry Smith   low   = 0;
35836bd2089SBarry Smith   high  = nrow;
35936bd2089SBarry Smith 
36036bd2089SBarry Smith   while (high - low > 7) {
36136bd2089SBarry Smith     t = (low + high) / 2;
36236bd2089SBarry Smith     if (rp[t] > col) high = t;
36336bd2089SBarry Smith     else low = t;
36436bd2089SBarry Smith   }
36536bd2089SBarry Smith   for (i = low; i < high; i++) {
36636bd2089SBarry Smith     if (rp[i] > col) break;
36736bd2089SBarry Smith     if (rp[i] == col) {
36836bd2089SBarry Smith       bap = ap + bs2 * i;
36936bd2089SBarry Smith       if (roworiented) {
37036bd2089SBarry Smith         if (is == ADD_VALUES) {
37136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
3729371c9d4SSatish Balay             for (jj = ii; jj < bs2; jj += bs) { bap[jj] += *value++; }
37336bd2089SBarry Smith           }
37436bd2089SBarry Smith         } else {
37536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
3769371c9d4SSatish Balay             for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; }
37736bd2089SBarry Smith           }
37836bd2089SBarry Smith         }
37936bd2089SBarry Smith       } else {
38036bd2089SBarry Smith         if (is == ADD_VALUES) {
38136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
3829371c9d4SSatish Balay             for (jj = 0; jj < bs; jj++) { *bap++ += *value++; }
38336bd2089SBarry Smith           }
38436bd2089SBarry Smith         } else {
38536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
3869371c9d4SSatish Balay             for (jj = 0; jj < bs; jj++) { *bap++ = *value++; }
38736bd2089SBarry Smith           }
38836bd2089SBarry Smith         }
38936bd2089SBarry Smith       }
39036bd2089SBarry Smith       goto noinsert2;
39136bd2089SBarry Smith     }
39236bd2089SBarry Smith   }
39336bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
3945f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
39536bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3969371c9d4SSatish Balay   N = nrow++ - 1;
3979371c9d4SSatish Balay   high++;
39836bd2089SBarry Smith   /* shift up all the later entries in this row */
3999566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4009566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
40136bd2089SBarry Smith   rp[i] = col;
40236bd2089SBarry Smith   bap   = ap + bs2 * i;
40336bd2089SBarry Smith   if (roworiented) {
40436bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
4059371c9d4SSatish Balay       for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; }
40636bd2089SBarry Smith     }
40736bd2089SBarry Smith   } else {
40836bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
4099371c9d4SSatish Balay       for (jj = 0; jj < bs; jj++) { *bap++ = *value++; }
41036bd2089SBarry Smith     }
41136bd2089SBarry Smith   }
41236bd2089SBarry Smith noinsert2:;
41336bd2089SBarry Smith   ailen[row] = nrow;
41436bd2089SBarry Smith   PetscFunctionReturn(0);
41536bd2089SBarry Smith }
41636bd2089SBarry Smith 
41736bd2089SBarry Smith /*
41836bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
41936bd2089SBarry Smith */
4209371c9d4SSatish Balay static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) {
42136bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
42236bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
42336bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
42436bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
42536bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
42636bd2089SBarry Smith   const PetscScalar *value       = v;
42736bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
42836bd2089SBarry Smith 
42936bd2089SBarry Smith   PetscFunctionBegin;
43036bd2089SBarry Smith   rp    = aj + ai[row];
43136bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
43236bd2089SBarry Smith   rmax  = imax[row];
43336bd2089SBarry Smith   nrow  = ailen[row];
43436bd2089SBarry Smith   low   = 0;
43536bd2089SBarry Smith   high  = nrow;
43636bd2089SBarry Smith   value = v;
43736bd2089SBarry Smith   while (high - low > 7) {
43836bd2089SBarry Smith     t = (low + high) / 2;
43936bd2089SBarry Smith     if (rp[t] > col) high = t;
44036bd2089SBarry Smith     else low = t;
44136bd2089SBarry Smith   }
44236bd2089SBarry Smith   for (i = low; i < high; i++) {
44336bd2089SBarry Smith     if (rp[i] > col) break;
44436bd2089SBarry Smith     if (rp[i] == col) {
44536bd2089SBarry Smith       bap = ap + bs2 * i;
44636bd2089SBarry Smith       if (roworiented) {
44736bd2089SBarry Smith         if (is == ADD_VALUES) {
44836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
4499371c9d4SSatish Balay             for (jj = ii; jj < bs2; jj += bs) { bap[jj] += *value++; }
45036bd2089SBarry Smith           }
45136bd2089SBarry Smith         } else {
45236bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
4539371c9d4SSatish Balay             for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; }
45436bd2089SBarry Smith           }
45536bd2089SBarry Smith         }
45636bd2089SBarry Smith       } else {
45736bd2089SBarry Smith         if (is == ADD_VALUES) {
45836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
4599371c9d4SSatish Balay             for (jj = 0; jj < bs; jj++) { bap[jj] += value[jj]; }
46036bd2089SBarry Smith             bap += bs;
46136bd2089SBarry Smith           }
46236bd2089SBarry Smith         } else {
46336bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
4649371c9d4SSatish Balay             for (jj = 0; jj < bs; jj++) { bap[jj] = value[jj]; }
46536bd2089SBarry Smith             bap += bs;
46636bd2089SBarry Smith           }
46736bd2089SBarry Smith         }
46836bd2089SBarry Smith       }
46936bd2089SBarry Smith       goto noinsert2;
47036bd2089SBarry Smith     }
47136bd2089SBarry Smith   }
47236bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4735f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
47436bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4759371c9d4SSatish Balay   N = nrow++ - 1;
4769371c9d4SSatish Balay   high++;
47736bd2089SBarry Smith   /* shift up all the later entries in this row */
4789566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4799566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
48036bd2089SBarry Smith   rp[i] = col;
48136bd2089SBarry Smith   bap   = ap + bs2 * i;
48236bd2089SBarry Smith   if (roworiented) {
48336bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
4849371c9d4SSatish Balay       for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; }
48536bd2089SBarry Smith     }
48636bd2089SBarry Smith   } else {
48736bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
4889371c9d4SSatish Balay       for (jj = 0; jj < bs; jj++) { *bap++ = *value++; }
48936bd2089SBarry Smith     }
49036bd2089SBarry Smith   }
49136bd2089SBarry Smith noinsert2:;
49236bd2089SBarry Smith   ailen[row] = nrow;
49336bd2089SBarry Smith   PetscFunctionReturn(0);
49436bd2089SBarry Smith }
49536bd2089SBarry Smith 
49636bd2089SBarry Smith /*
49736bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
49836bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
49936bd2089SBarry Smith */
5009371c9d4SSatish Balay PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) {
5010880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ *)mat->data;
502f15d580aSBarry Smith   const MatScalar *value;
503f15d580aSBarry Smith   MatScalar       *barray      = baij->barray;
504ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
505899cda47SBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
506476417e5SBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
507476417e5SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5080880e062SHong Zhang 
509a30f8f8cSSatish Balay   PetscFunctionBegin;
5100880e062SHong Zhang   if (!barray) {
5119566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
5120880e062SHong Zhang     baij->barray = barray;
5130880e062SHong Zhang   }
5140880e062SHong Zhang 
5150880e062SHong Zhang   if (roworiented) {
5160880e062SHong Zhang     stepval = (n - 1) * bs;
5170880e062SHong Zhang   } else {
5180880e062SHong Zhang     stepval = (m - 1) * bs;
5190880e062SHong Zhang   }
5200880e062SHong Zhang   for (i = 0; i < m; i++) {
5210880e062SHong Zhang     if (im[i] < 0) continue;
5226bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5230880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5240880e062SHong Zhang       row = im[i] - rstart;
5250880e062SHong Zhang       for (j = 0; j < n; j++) {
526f3f98c53SJed Brown         if (im[i] > in[j]) {
527f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
528e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
529f3f98c53SJed Brown         }
5300880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5310880e062SHong Zhang         if ((roworiented) && (n == 1)) {
532f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
5330880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
534f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
5350880e062SHong Zhang         } else { /* Here a copy is required */
5360880e062SHong Zhang           if (roworiented) {
5370880e062SHong Zhang             value = v + i * (stepval + bs) * bs + j * bs;
5380880e062SHong Zhang           } else {
5390880e062SHong Zhang             value = v + j * (stepval + bs) * bs + i * bs;
5400880e062SHong Zhang           }
5410880e062SHong Zhang           for (ii = 0; ii < bs; ii++, value += stepval) {
5429371c9d4SSatish Balay             for (jj = 0; jj < bs; jj++) { *barray++ = *value++; }
5430880e062SHong Zhang           }
5440880e062SHong Zhang           barray -= bs2;
5450880e062SHong Zhang         }
5460880e062SHong Zhang 
5470880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5480880e062SHong Zhang           col = in[j] - cstart;
5499566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
550f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
551f7d195e4SLawrence Mitchell           continue;
552f7d195e4SLawrence Mitchell         } else {
553f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
5540880e062SHong Zhang           if (mat->was_assembled) {
555*48a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
5560880e062SHong Zhang 
5572515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5580880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5599371c9d4SSatish Balay             {
5609371c9d4SSatish Balay               PetscInt data;
5619566063dSJacob Faibussowitsch               PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &data));
56208401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
5630880e062SHong Zhang             }
5640880e062SHong Zhang #else
56508401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
5660880e062SHong Zhang #endif
5670880e062SHong Zhang #endif
5680880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5699566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &col));
5700880e062SHong Zhang             col = (col - 1) / bs;
5710880e062SHong Zhang #else
5720880e062SHong Zhang             col = (baij->colmap[in[j]] - 1) / bs;
5730880e062SHong Zhang #endif
5740880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
5759566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
5760880e062SHong Zhang               col = in[j];
5770880e062SHong Zhang             }
57826fbe8dcSKarl Rupp           } else col = in[j];
5799566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
5800880e062SHong Zhang         }
5810880e062SHong Zhang       }
5820880e062SHong Zhang     } else {
5835f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
5840880e062SHong Zhang       if (!baij->donotstash) {
5850880e062SHong Zhang         if (roworiented) {
5869566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
5870880e062SHong Zhang         } else {
5889566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
5890880e062SHong Zhang         }
5900880e062SHong Zhang       }
5910880e062SHong Zhang     }
5920880e062SHong Zhang   }
5930880e062SHong Zhang   PetscFunctionReturn(0);
594a30f8f8cSSatish Balay }
595a30f8f8cSSatish Balay 
5969371c9d4SSatish Balay PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) {
597f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
598d0f46423SBarry Smith   PetscInt      bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
599d0f46423SBarry Smith   PetscInt      bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
600a30f8f8cSSatish Balay 
601a30f8f8cSSatish Balay   PetscFunctionBegin;
602a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
60354c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
60454c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
605a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
606a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
607a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
60854c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
60954c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
610a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
611a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
6129566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
613a30f8f8cSSatish Balay         } else {
614*48a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
615a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
6169566063dSJacob Faibussowitsch           PetscCall(PetscTableFind(baij->colmap, idxn[j] / bs + 1, &data));
617a30f8f8cSSatish Balay           data--;
618a30f8f8cSSatish Balay #else
619a30f8f8cSSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
620a30f8f8cSSatish Balay #endif
621a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
622a30f8f8cSSatish Balay           else {
623a30f8f8cSSatish Balay             col = data + idxn[j] % bs;
6249566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
625a30f8f8cSSatish Balay           }
626a30f8f8cSSatish Balay         }
627a30f8f8cSSatish Balay       }
628f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
629a30f8f8cSSatish Balay   }
630a30f8f8cSSatish Balay   PetscFunctionReturn(0);
631a30f8f8cSSatish Balay }
632a30f8f8cSSatish Balay 
6339371c9d4SSatish Balay PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) {
634a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
635a30f8f8cSSatish Balay   PetscReal     sum[2], *lnorm2;
636a30f8f8cSSatish Balay 
637a30f8f8cSSatish Balay   PetscFunctionBegin;
638a30f8f8cSSatish Balay   if (baij->size == 1) {
6399566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, norm));
640a30f8f8cSSatish Balay   } else {
641a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
6429566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2, &lnorm2));
6439566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A, type, lnorm2));
6449371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
6459371c9d4SSatish Balay       lnorm2++; /* squar power of norm(A) */
6469566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B, type, lnorm2));
6479371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
6489371c9d4SSatish Balay       lnorm2--; /* squar power of norm(B) */
6491c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
6508f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
6519566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
6520b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6530b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
6540b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ *)baij->B->data;
6550b8dc8d2SHong Zhang       PetscReal    *rsum, *rsum2, vabs;
656899cda47SBarry Smith       PetscInt     *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
657d0f46423SBarry Smith       PetscInt      brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
6580b8dc8d2SHong Zhang       MatScalar    *v;
6590b8dc8d2SHong Zhang 
6609566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2));
6619566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(rsum, mat->cmap->N));
6620b8dc8d2SHong Zhang       /* Amat */
6639371c9d4SSatish Balay       v  = amat->a;
6649371c9d4SSatish Balay       jj = amat->j;
6650b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
6660b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
6670b8dc8d2SHong Zhang         nz   = amat->i[brow + 1] - amat->i[brow];
6680b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
6699371c9d4SSatish Balay           gcol = bs * (rstart + *jj);
6709371c9d4SSatish Balay           jj++;
6710b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
6720b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
6739371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
6749371c9d4SSatish Balay               v++;
6750b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
6760b8dc8d2SHong Zhang               /* non-diagonal block */
6770b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
6780b8dc8d2SHong Zhang             }
6790b8dc8d2SHong Zhang           }
6800b8dc8d2SHong Zhang         }
6819566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
6820b8dc8d2SHong Zhang       }
6830b8dc8d2SHong Zhang       /* Bmat */
6849371c9d4SSatish Balay       v  = bmat->a;
6859371c9d4SSatish Balay       jj = bmat->j;
6860b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
6870b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
6880b8dc8d2SHong Zhang         nz   = bmat->i[brow + 1] - bmat->i[brow];
6890b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
6909371c9d4SSatish Balay           gcol = bs * garray[*jj];
6919371c9d4SSatish Balay           jj++;
6920b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
6930b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
6949371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
6959371c9d4SSatish Balay               v++;
6960b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
6970b8dc8d2SHong Zhang               rsum[grow + row] += vabs;
6980b8dc8d2SHong Zhang             }
6990b8dc8d2SHong Zhang           }
7000b8dc8d2SHong Zhang         }
7019566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7020b8dc8d2SHong Zhang       }
7031c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7040b8dc8d2SHong Zhang       *norm = 0.0;
705d0f46423SBarry Smith       for (col = 0; col < mat->cmap->N; col++) {
7060b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7070b8dc8d2SHong Zhang       }
7089566063dSJacob Faibussowitsch       PetscCall(PetscFree2(rsum, rsum2));
709f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
710a30f8f8cSSatish Balay   }
711a30f8f8cSSatish Balay   PetscFunctionReturn(0);
712a30f8f8cSSatish Balay }
713a30f8f8cSSatish Balay 
7149371c9d4SSatish Balay PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) {
715a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7161302d50aSBarry Smith   PetscInt      nstash, reallocs;
717a30f8f8cSSatish Balay 
718a30f8f8cSSatish Balay   PetscFunctionBegin;
71926fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
720a30f8f8cSSatish Balay 
7219566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7229566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7239566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7249566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7259566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7269566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
727a30f8f8cSSatish Balay   PetscFunctionReturn(0);
728a30f8f8cSSatish Balay }
729a30f8f8cSSatish Balay 
7309371c9d4SSatish Balay PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) {
731a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
732a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ *)baij->A->data;
73313f74950SBarry Smith   PetscInt      i, j, rstart, ncols, flg, bs2 = baij->bs2;
734e44c0bd4SBarry Smith   PetscInt     *row, *col;
735ace3abfcSBarry Smith   PetscBool     other_disassembled;
73613f74950SBarry Smith   PetscMPIInt   n;
737ace3abfcSBarry Smith   PetscBool     r1, r2, r3;
738a30f8f8cSSatish Balay   MatScalar    *val;
739a30f8f8cSSatish Balay 
74091c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
741a30f8f8cSSatish Balay   PetscFunctionBegin;
7424cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
743a30f8f8cSSatish Balay     while (1) {
7449566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
745a30f8f8cSSatish Balay       if (!flg) break;
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay       for (i = 0; i < n;) {
748a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
74926fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
75026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
75126fbe8dcSKarl Rupp         }
752a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
753a30f8f8cSSatish Balay         else ncols = n - i;
754a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7559566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
756a30f8f8cSSatish Balay         i = j;
757a30f8f8cSSatish Balay       }
758a30f8f8cSSatish Balay     }
7599566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
760a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
761a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
762a30f8f8cSSatish Balay        restore the original flags */
763a30f8f8cSSatish Balay     r1 = baij->roworiented;
764a30f8f8cSSatish Balay     r2 = a->roworiented;
76591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
76626fbe8dcSKarl Rupp 
767a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
768a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
76926fbe8dcSKarl Rupp 
77091c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
771a30f8f8cSSatish Balay     while (1) {
7729566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
773a30f8f8cSSatish Balay       if (!flg) break;
774a30f8f8cSSatish Balay 
775a30f8f8cSSatish Balay       for (i = 0; i < n;) {
776a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
77726fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
77826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
77926fbe8dcSKarl Rupp         }
780a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
781a30f8f8cSSatish Balay         else ncols = n - i;
7829566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
783a30f8f8cSSatish Balay         i = j;
784a30f8f8cSSatish Balay       }
785a30f8f8cSSatish Balay     }
7869566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
78726fbe8dcSKarl Rupp 
788a30f8f8cSSatish Balay     baij->roworiented = r1;
789a30f8f8cSSatish Balay     a->roworiented    = r2;
79026fbe8dcSKarl Rupp 
79191c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */
792a30f8f8cSSatish Balay   }
793a30f8f8cSSatish Balay 
7949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
7959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
796a30f8f8cSSatish Balay 
797a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
7986aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
799a30f8f8cSSatish Balay   /*
800a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
801a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
802a30f8f8cSSatish Balay   */
803a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
8045f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
805*48a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
806a30f8f8cSSatish Balay   }
807a30f8f8cSSatish Balay 
8089371c9d4SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ }
8099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
8109566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
811a30f8f8cSSatish Balay 
8129566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
81326fbe8dcSKarl Rupp 
814f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8154f9cfa9eSBarry Smith 
8164f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8174f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
818e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
8191c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
820e56f5c9eSBarry Smith   }
821a30f8f8cSSatish Balay   PetscFunctionReturn(0);
822a30f8f8cSSatish Balay }
823a30f8f8cSSatish Balay 
824dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8259804daf3SBarry Smith #include <petscdraw.h>
8269371c9d4SSatish Balay static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) {
827a30f8f8cSSatish Balay   Mat_MPISBAIJ     *baij = (Mat_MPISBAIJ *)mat->data;
828d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8297da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
830ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
831b0a32e0cSBarry Smith   PetscViewer       sviewer;
832f3ef73ceSBarry Smith   PetscViewerFormat format;
833a30f8f8cSSatish Balay 
834a30f8f8cSSatish Balay   PetscFunctionBegin;
8359566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
8369566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
83732077d6dSBarry Smith   if (iascii) {
8389566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
839456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
840a30f8f8cSSatish Balay       MatInfo info;
8419566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
8429566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
8439566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
8449371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
8459371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
8469566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
8479566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
8489566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
8499566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
8509566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
8519566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
8529566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
8539566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
854a30f8f8cSSatish Balay       PetscFunctionReturn(0);
855fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
8569566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
857a30f8f8cSSatish Balay       PetscFunctionReturn(0);
858c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
859c1490034SHong Zhang       PetscFunctionReturn(0);
860a30f8f8cSSatish Balay     }
861a30f8f8cSSatish Balay   }
862a30f8f8cSSatish Balay 
863a30f8f8cSSatish Balay   if (isdraw) {
864b0a32e0cSBarry Smith     PetscDraw draw;
865ace3abfcSBarry Smith     PetscBool isnull;
8669566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
8679566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
86845f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
869a30f8f8cSSatish Balay   }
870a30f8f8cSSatish Balay 
8717da1fb6eSBarry Smith   {
872a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
873a30f8f8cSSatish Balay     Mat           A;
87465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
87565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
876d0f46423SBarry Smith     PetscInt      M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
877a30f8f8cSSatish Balay     MatScalar    *a;
8783e219373SBarry Smith     const char   *matname;
879a30f8f8cSSatish Balay 
880f204ca49SKris Buschelman     /* Should this be the same type as mat? */
8819566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
882dd400576SPatrick Sanan     if (rank == 0) {
8839566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
884a30f8f8cSSatish Balay     } else {
8859566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
886a30f8f8cSSatish Balay     }
8879566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISBAIJ));
8889566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
8899566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
8909566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)A));
891a30f8f8cSSatish Balay 
892a30f8f8cSSatish Balay     /* copy over the A part */
89365d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ *)baij->A->data;
8949371c9d4SSatish Balay     ai   = Aloc->i;
8959371c9d4SSatish Balay     aj   = Aloc->j;
8969371c9d4SSatish Balay     a    = Aloc->a;
8979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
898a30f8f8cSSatish Balay 
899a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
900e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
90126fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
902a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
903e9f7bc9eSHong Zhang         col = (baij->cstartbs + aj[j]) * bs;
904a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9059566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
90626fbe8dcSKarl Rupp           col++;
90726fbe8dcSKarl Rupp           a += bs;
908a30f8f8cSSatish Balay         }
909a30f8f8cSSatish Balay       }
910a30f8f8cSSatish Balay     }
911a30f8f8cSSatish Balay     /* copy over the B part */
91265d70643SHong Zhang     Bloc = (Mat_SeqBAIJ *)baij->B->data;
9139371c9d4SSatish Balay     ai   = Bloc->i;
9149371c9d4SSatish Balay     aj   = Bloc->j;
9159371c9d4SSatish Balay     a    = Bloc->a;
916a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
917e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
91826fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
919a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
920a30f8f8cSSatish Balay         col = baij->garray[aj[j]] * bs;
921a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9229566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
92326fbe8dcSKarl Rupp           col++;
92426fbe8dcSKarl Rupp           a += bs;
925a30f8f8cSSatish Balay         }
926a30f8f8cSSatish Balay       }
927a30f8f8cSSatish Balay     }
9289566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
9299566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9309566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
931a30f8f8cSSatish Balay     /*
932a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
933b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
934a30f8f8cSSatish Balay     */
9359566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
9369566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
937dd400576SPatrick Sanan     if (rank == 0) {
9389566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)(A->data))->A, matname));
9399566063dSJacob Faibussowitsch       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)(A->data))->A, sviewer));
940a30f8f8cSSatish Balay     }
9419566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
9429566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
9439566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
944a30f8f8cSSatish Balay   }
945a30f8f8cSSatish Balay   PetscFunctionReturn(0);
946a30f8f8cSSatish Balay }
947a30f8f8cSSatish Balay 
948618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
949618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
950d1654148SHong Zhang 
9519371c9d4SSatish Balay PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) {
952ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
953a30f8f8cSSatish Balay 
954a30f8f8cSSatish Balay   PetscFunctionBegin;
9559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
9569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
9579566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
9589566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
959d1654148SHong Zhang   if (iascii || isdraw || issocket) {
9609566063dSJacob Faibussowitsch     PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
9611baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
962a30f8f8cSSatish Balay   PetscFunctionReturn(0);
963a30f8f8cSSatish Balay }
964a30f8f8cSSatish Balay 
9659371c9d4SSatish Balay PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) {
966a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
967a30f8f8cSSatish Balay 
968a30f8f8cSSatish Balay   PetscFunctionBegin;
969a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
970c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N);
971a30f8f8cSSatish Balay #endif
9729566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->stash));
9739566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->bstash));
9749566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->A));
9759566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->B));
976a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
9779566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&baij->colmap));
978a30f8f8cSSatish Balay #else
9799566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->colmap));
980a30f8f8cSSatish Balay #endif
9819566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->garray));
9829566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->lvec));
9839566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->Mvctx));
9849566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec0));
9859566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec0b));
9869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1));
9879566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1a));
9889566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1b));
9899566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->sMvctx));
9909566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
9919566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->barray));
9929566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->hd));
9939566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->diag));
9949566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->bb1));
9959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->xx1));
996ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
9979566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->setvaluescopy));
998a30f8f8cSSatish Balay #endif
9999566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->in_loc));
10009566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->v_loc));
10019566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->rangebs));
10029566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
1003901853e0SKris Buschelman 
10049566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
10059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
10069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
10079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
10089566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
10096214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
10109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
10116214f412SHong Zhang #endif
1012d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
10139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
1014d24d4204SJose E. Roman #endif
10159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
10169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
1017a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1018a30f8f8cSSatish Balay }
1019a30f8f8cSSatish Balay 
10209371c9d4SSatish Balay PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) {
1021547795f9SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1022eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
10236de40e93SBarry Smith   PetscScalar       *from;
10246de40e93SBarry Smith   const PetscScalar *x;
1025547795f9SHong Zhang 
1026547795f9SHong Zhang   PetscFunctionBegin;
1027547795f9SHong Zhang   /* diagonal part */
10289566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
10299566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b, 0.0));
1030547795f9SHong Zhang 
1031547795f9SHong Zhang   /* subdiagonal part */
10325f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10339566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1034547795f9SHong Zhang 
1035547795f9SHong Zhang   /* copy x into the vec slvec0 */
10369566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10379566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1038547795f9SHong Zhang 
10399566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1042547795f9SHong Zhang 
10439566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10449566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1045547795f9SHong Zhang   /* supperdiagonal part */
10469566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
1047547795f9SHong Zhang   PetscFunctionReturn(0);
1048547795f9SHong Zhang }
1049547795f9SHong Zhang 
10509371c9d4SSatish Balay PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) {
1051a9d4b620SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1052eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1053d9ca1df4SBarry Smith   PetscScalar       *from;
1054d9ca1df4SBarry Smith   const PetscScalar *x;
1055a9d4b620SHong Zhang 
1056a9d4b620SHong Zhang   PetscFunctionBegin;
1057a9d4b620SHong Zhang   /* diagonal part */
10589566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
10599566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b, 0.0));
1060a9d4b620SHong Zhang 
1061a9d4b620SHong Zhang   /* subdiagonal part */
10629566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1063fc165ae2SBarry Smith 
1064a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10659566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10669566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1067a9d4b620SHong Zhang 
10689566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10699566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10709566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1071fc165ae2SBarry Smith 
10729566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10739566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1074a9d4b620SHong Zhang   /* supperdiagonal part */
10759566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
1076a9d4b620SHong Zhang   PetscFunctionReturn(0);
1077a9d4b620SHong Zhang }
1078a9d4b620SHong Zhang 
10799371c9d4SSatish Balay PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) {
1080eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1081eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1082eb1ec7c1SStefano Zampini   PetscScalar       *from, zero       = 0.0;
1083eb1ec7c1SStefano Zampini   const PetscScalar *x;
1084eb1ec7c1SStefano Zampini 
1085eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1086eb1ec7c1SStefano Zampini   /* diagonal part */
10879566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
10889566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b, zero));
1089eb1ec7c1SStefano Zampini 
1090eb1ec7c1SStefano Zampini   /* subdiagonal part */
10915f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10929566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1093eb1ec7c1SStefano Zampini 
1094eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
10959566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10969566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
10979566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1099eb1ec7c1SStefano Zampini 
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11019566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11029566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1103eb1ec7c1SStefano Zampini 
1104eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11059566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
1106eb1ec7c1SStefano Zampini   PetscFunctionReturn(0);
1107eb1ec7c1SStefano Zampini }
1108eb1ec7c1SStefano Zampini 
11099371c9d4SSatish Balay PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) {
1110de8b6608SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1111d0f46423SBarry Smith   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1112d9ca1df4SBarry Smith   PetscScalar       *from, zero       = 0.0;
1113d9ca1df4SBarry Smith   const PetscScalar *x;
1114a9d4b620SHong Zhang 
1115a9d4b620SHong Zhang   PetscFunctionBegin;
1116a9d4b620SHong Zhang   /* diagonal part */
11179566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
11189566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b, zero));
1119a9d4b620SHong Zhang 
1120a9d4b620SHong Zhang   /* subdiagonal part */
11219566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1122a9d4b620SHong Zhang 
1123a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11249566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11259566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11269566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1128a9d4b620SHong Zhang 
11299566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11309566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11319566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1132a9d4b620SHong Zhang 
1133a9d4b620SHong Zhang   /* supperdiagonal part */
11349566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
1135a9d4b620SHong Zhang   PetscFunctionReturn(0);
1136a9d4b620SHong Zhang }
1137a9d4b620SHong Zhang 
1138a30f8f8cSSatish Balay /*
1139a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1140a30f8f8cSSatish Balay    diagonal block
1141a30f8f8cSSatish Balay */
11429371c9d4SSatish Balay PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) {
1143a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1144a30f8f8cSSatish Balay 
1145a30f8f8cSSatish Balay   PetscFunctionBegin;
114608401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11479566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
1148a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1149a30f8f8cSSatish Balay }
1150a30f8f8cSSatish Balay 
11519371c9d4SSatish Balay PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) {
1152a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1153a30f8f8cSSatish Balay 
1154a30f8f8cSSatish Balay   PetscFunctionBegin;
11559566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11569566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
1157a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1158a30f8f8cSSatish Balay }
1159a30f8f8cSSatish Balay 
11609371c9d4SSatish Balay PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) {
1161d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1162d0d4cfc2SHong Zhang   PetscScalar  *vworkA, *vworkB, **pvA, **pvB, *v_p;
1163d0f46423SBarry Smith   PetscInt      bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1164d0f46423SBarry Smith   PetscInt      nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1165899cda47SBarry Smith   PetscInt     *cmap, *idx_p, cstart = mat->rstartbs;
1166d0d4cfc2SHong Zhang 
1167a30f8f8cSSatish Balay   PetscFunctionBegin;
11685f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1169d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1170d0d4cfc2SHong Zhang 
1171d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1172d0d4cfc2SHong Zhang     /*
1173d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1174d0d4cfc2SHong Zhang     */
1175d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa  = (Mat_SeqSBAIJ *)mat->A->data;
1176d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba  = (Mat_SeqBAIJ *)mat->B->data;
1177d0d4cfc2SHong Zhang     PetscInt      max = 1, mbs = mat->mbs, tmp;
1178d0d4cfc2SHong Zhang     for (i = 0; i < mbs; i++) {
1179d0d4cfc2SHong Zhang       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
118026fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1181d0d4cfc2SHong Zhang     }
11829566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1183d0d4cfc2SHong Zhang   }
1184d0d4cfc2SHong Zhang 
11855f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1186d0d4cfc2SHong Zhang   lrow = row - brstart; /* local row index */
1187d0d4cfc2SHong Zhang 
11889371c9d4SSatish Balay   pvA = &vworkA;
11899371c9d4SSatish Balay   pcA = &cworkA;
11909371c9d4SSatish Balay   pvB = &vworkB;
11919371c9d4SSatish Balay   pcB = &cworkB;
11929371c9d4SSatish Balay   if (!v) {
11939371c9d4SSatish Balay     pvA = NULL;
11949371c9d4SSatish Balay     pvB = NULL;
11959371c9d4SSatish Balay   }
11969371c9d4SSatish Balay   if (!idx) {
11979371c9d4SSatish Balay     pcA = NULL;
11989371c9d4SSatish Balay     if (!v) pcB = NULL;
11999371c9d4SSatish Balay   }
12009566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12019566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1202d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1203d0d4cfc2SHong Zhang 
1204d0d4cfc2SHong Zhang   cmap = mat->garray;
1205d0d4cfc2SHong Zhang   if (v || idx) {
1206d0d4cfc2SHong Zhang     if (nztot) {
1207d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1208d0d4cfc2SHong Zhang       PetscInt imark = -1;
1209d0d4cfc2SHong Zhang       if (v) {
1210d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1211d0d4cfc2SHong Zhang         for (i = 0; i < nzB; i++) {
1212d0d4cfc2SHong Zhang           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1213d0d4cfc2SHong Zhang           else break;
1214d0d4cfc2SHong Zhang         }
1215d0d4cfc2SHong Zhang         imark = i;
1216d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1217d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1218d0d4cfc2SHong Zhang       }
1219d0d4cfc2SHong Zhang       if (idx) {
1220d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1221d0d4cfc2SHong Zhang         if (imark > -1) {
12229371c9d4SSatish Balay           for (i = 0; i < imark; i++) { idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; }
1223d0d4cfc2SHong Zhang         } else {
1224d0d4cfc2SHong Zhang           for (i = 0; i < nzB; i++) {
122526fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1226d0d4cfc2SHong Zhang             else break;
1227d0d4cfc2SHong Zhang           }
1228d0d4cfc2SHong Zhang           imark = i;
1229d0d4cfc2SHong Zhang         }
1230d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1231d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1232d0d4cfc2SHong Zhang       }
1233d0d4cfc2SHong Zhang     } else {
1234f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1235f4259b30SLisandro Dalcin       if (v) *v = NULL;
1236d0d4cfc2SHong Zhang     }
1237d0d4cfc2SHong Zhang   }
1238d0d4cfc2SHong Zhang   *nz = nztot;
12399566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12409566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
1241a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1242a30f8f8cSSatish Balay }
1243a30f8f8cSSatish Balay 
12449371c9d4SSatish Balay PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) {
1245a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1246a30f8f8cSSatish Balay 
1247a30f8f8cSSatish Balay   PetscFunctionBegin;
12485f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1249a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1250a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1251a30f8f8cSSatish Balay }
1252a30f8f8cSSatish Balay 
12539371c9d4SSatish Balay PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) {
1254d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1255d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1256d0d4cfc2SHong Zhang 
1257d0d4cfc2SHong Zhang   PetscFunctionBegin;
1258d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1259d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1260d0d4cfc2SHong Zhang }
12619371c9d4SSatish Balay PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) {
1262d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1263d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1264d0d4cfc2SHong Zhang 
1265d0d4cfc2SHong Zhang   PetscFunctionBegin;
1266d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1267d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1268d0d4cfc2SHong Zhang }
1269d0d4cfc2SHong Zhang 
12709371c9d4SSatish Balay PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) {
12715f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
12725f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
12732726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
12742726fb6dSPierre Jolivet 
12759566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
12769566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
12775f80ce2aSJacob Faibussowitsch   }
12782726fb6dSPierre Jolivet   PetscFunctionReturn(0);
12792726fb6dSPierre Jolivet }
12802726fb6dSPierre Jolivet 
12819371c9d4SSatish Balay PetscErrorCode MatRealPart_MPISBAIJ(Mat A) {
128299cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
128399cafbc1SBarry Smith 
128499cafbc1SBarry Smith   PetscFunctionBegin;
12859566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
12869566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
128799cafbc1SBarry Smith   PetscFunctionReturn(0);
128899cafbc1SBarry Smith }
128999cafbc1SBarry Smith 
12909371c9d4SSatish Balay PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) {
129199cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
129299cafbc1SBarry Smith 
129399cafbc1SBarry Smith   PetscFunctionBegin;
12949566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
12959566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
129699cafbc1SBarry Smith   PetscFunctionReturn(0);
129799cafbc1SBarry Smith }
129899cafbc1SBarry Smith 
12997dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
130036032a97SHong Zhang    Input: isrow       - distributed(parallel),
130136032a97SHong Zhang           iscol_local - locally owned (seq)
130236032a97SHong Zhang */
13039371c9d4SSatish Balay PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) {
13048f46ffcaSHong Zhang   PetscInt        sz1, sz2, *a1, *a2, i, j, k, nmatch;
13058f46ffcaSHong Zhang   const PetscInt *ptr1, *ptr2;
130636032a97SHong Zhang 
130736032a97SHong Zhang   PetscFunctionBegin;
13089566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &sz1));
13099566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local, &sz2));
13101098a8e8SHong Zhang   if (sz1 > sz2) {
13111098a8e8SHong Zhang     *flg = PETSC_FALSE;
13121098a8e8SHong Zhang     PetscFunctionReturn(0);
13131098a8e8SHong Zhang   }
13148f46ffcaSHong Zhang 
13159566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &ptr1));
13169566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local, &ptr2));
13178f46ffcaSHong Zhang 
13189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1, &a1));
13199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2, &a2));
13209566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1, ptr1, sz1));
13219566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2, ptr2, sz2));
13229566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1, a1));
13239566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2, a2));
13248f46ffcaSHong Zhang 
13258f46ffcaSHong Zhang   nmatch = 0;
13268f46ffcaSHong Zhang   k      = 0;
13278f46ffcaSHong Zhang   for (i = 0; i < sz1; i++) {
13288f46ffcaSHong Zhang     for (j = k; j < sz2; j++) {
13298f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13309371c9d4SSatish Balay         k = j;
13319371c9d4SSatish Balay         nmatch++;
13328f46ffcaSHong Zhang         break;
13338f46ffcaSHong Zhang       }
13348f46ffcaSHong Zhang     }
13358f46ffcaSHong Zhang   }
13369566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &ptr1));
13379566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13389566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13399566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13401098a8e8SHong Zhang   if (nmatch < sz1) {
13411098a8e8SHong Zhang     *flg = PETSC_FALSE;
13421098a8e8SHong Zhang   } else {
13431098a8e8SHong Zhang     *flg = PETSC_TRUE;
13441098a8e8SHong Zhang   }
134536032a97SHong Zhang   PetscFunctionReturn(0);
13468f46ffcaSHong Zhang }
134736032a97SHong Zhang 
13489371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) {
134936032a97SHong Zhang   IS        iscol_local;
135036032a97SHong Zhang   PetscInt  csize;
135136032a97SHong Zhang   PetscBool isequal;
135236032a97SHong Zhang 
135336032a97SHong Zhang   PetscFunctionBegin;
13549566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
135536032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13569566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13575f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
135836032a97SHong Zhang   } else {
1359068661f9SToby Isaac     PetscBool issorted;
1360068661f9SToby Isaac 
13619566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
13629566063dSJacob Faibussowitsch     PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
13639566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
13645f80ce2aSJacob Faibussowitsch     PetscCheck(isequal && issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must equal isrow and be sorted");
13658f46ffcaSHong Zhang   }
13668f46ffcaSHong Zhang 
13677dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
13689566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat));
13698f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
13709566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
13719566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
13728f46ffcaSHong Zhang   }
13738f46ffcaSHong Zhang   PetscFunctionReturn(0);
13748f46ffcaSHong Zhang }
13758f46ffcaSHong Zhang 
13769371c9d4SSatish Balay PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) {
1377a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1378a30f8f8cSSatish Balay 
1379a30f8f8cSSatish Balay   PetscFunctionBegin;
13809566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
13819566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
1382a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1383a30f8f8cSSatish Balay }
1384a30f8f8cSSatish Balay 
13859371c9d4SSatish Balay PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) {
1386a30f8f8cSSatish Balay   Mat_MPISBAIJ  *a = (Mat_MPISBAIJ *)matin->data;
1387a30f8f8cSSatish Balay   Mat            A = a->A, B = a->B;
13883966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1389a30f8f8cSSatish Balay 
1390a30f8f8cSSatish Balay   PetscFunctionBegin;
1391d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
139226fbe8dcSKarl Rupp 
13939566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
139426fbe8dcSKarl Rupp 
13959371c9d4SSatish Balay   isend[0] = info->nz_used;
13969371c9d4SSatish Balay   isend[1] = info->nz_allocated;
13979371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
13989371c9d4SSatish Balay   isend[3] = info->memory;
13999371c9d4SSatish Balay   isend[4] = info->mallocs;
140026fbe8dcSKarl Rupp 
14019566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
140226fbe8dcSKarl Rupp 
14039371c9d4SSatish Balay   isend[0] += info->nz_used;
14049371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14059371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14069371c9d4SSatish Balay   isend[3] += info->memory;
14079371c9d4SSatish Balay   isend[4] += info->mallocs;
1408a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1409a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1410a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1411a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1412a30f8f8cSSatish Balay     info->memory       = isend[3];
1413a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1414a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14151c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
141626fbe8dcSKarl Rupp 
1417a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1418a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1419a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1420a30f8f8cSSatish Balay     info->memory       = irecv[3];
1421a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1422a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14231c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
142426fbe8dcSKarl Rupp 
1425a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1426a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1427a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1428a30f8f8cSSatish Balay     info->memory       = irecv[3];
1429a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
143098921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1431a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1432a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1433a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1434a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1435a30f8f8cSSatish Balay }
1436a30f8f8cSSatish Balay 
14379371c9d4SSatish Balay PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) {
1438a30f8f8cSSatish Balay   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1439d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1440a30f8f8cSSatish Balay 
1441a30f8f8cSSatish Balay   PetscFunctionBegin;
1442e98b92d7SKris Buschelman   switch (op) {
1443512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1444e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
144528b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1446a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1447c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1448e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
144943674050SBarry Smith     MatCheckPreallocated(A, 1);
14509566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14519566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1452e98b92d7SKris Buschelman     break;
1453e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
145443674050SBarry Smith     MatCheckPreallocated(A, 1);
14554e0d8c25SBarry Smith     a->roworiented = flg;
145626fbe8dcSKarl Rupp 
14579566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14589566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1459e98b92d7SKris Buschelman     break;
14608c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
14619371c9d4SSatish Balay   case MAT_SORTED_FULL: PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); break;
14629371c9d4SSatish Balay   case MAT_IGNORE_OFF_PROC_ENTRIES: a->donotstash = flg; break;
14639371c9d4SSatish Balay   case MAT_USE_HASH_TABLE: a->ht_flag = flg; break;
14649371c9d4SSatish Balay   case MAT_HERMITIAN: MatCheckPreallocated(A, 1); PetscCall(MatSetOption(a->A, op, flg));
14650f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1466eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1467547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1468eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1469eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1470eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1471b94d7dedSBarry Smith       A->symmetric             = PETSC_BOOL3_FALSE;
1472eb1ec7c1SStefano Zampini     }
14730f2140c7SStefano Zampini #endif
1474eeffb40dSHong Zhang     break;
1475ffa07934SHong Zhang   case MAT_SPD:
14769371c9d4SSatish Balay   case MAT_SYMMETRIC: MatCheckPreallocated(A, 1); PetscCall(MatSetOption(a->A, op, flg));
1477eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1478eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1479eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1480eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1481eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1482eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1483eb1ec7c1SStefano Zampini     }
1484eb1ec7c1SStefano Zampini #endif
1485eeffb40dSHong Zhang     break;
148677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
148743674050SBarry Smith     MatCheckPreallocated(A, 1);
14889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
1489eeffb40dSHong Zhang     break;
14909a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1491b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
14925f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric");
14939566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
149477e54ba9SKris Buschelman     break;
14959371c9d4SSatish Balay   case MAT_SPD_ETERNAL: break;
14969371c9d4SSatish Balay   case MAT_IGNORE_LOWER_TRIANGULAR: aA->ignore_ltriangular = flg; break;
14979371c9d4SSatish Balay   case MAT_ERROR_LOWER_TRIANGULAR: aA->ignore_ltriangular = flg; break;
14989371c9d4SSatish Balay   case MAT_GETROW_UPPERTRIANGULAR: aA->getrow_utriangular = flg; break;
14999371c9d4SSatish Balay   default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
1500a30f8f8cSSatish Balay   }
1501a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1502a30f8f8cSSatish Balay }
1503a30f8f8cSSatish Balay 
15049371c9d4SSatish Balay PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) {
1505a30f8f8cSSatish Balay   PetscFunctionBegin;
15067fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1507cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
15089566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1509cf37664fSBarry Smith   } else if (reuse == MAT_REUSE_MATRIX) {
15109566063dSJacob Faibussowitsch     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1511fc4dec0aSBarry Smith   }
15128115998fSBarry Smith   PetscFunctionReturn(0);
1513a30f8f8cSSatish Balay }
1514a30f8f8cSSatish Balay 
15159371c9d4SSatish Balay PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) {
1516a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1517a30f8f8cSSatish Balay   Mat           a = baij->A, b = baij->B;
15185e90f9d9SHong Zhang   PetscInt      nv, m, n;
1519ace3abfcSBarry Smith   PetscBool     flg;
1520a30f8f8cSSatish Balay 
1521a30f8f8cSSatish Balay   PetscFunctionBegin;
1522a30f8f8cSSatish Balay   if (ll != rr) {
15239566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll, rr, &flg));
15245f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same");
1525a30f8f8cSSatish Balay   }
1526b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1527b3bf805bSHong Zhang 
15289566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
15295f80ce2aSJacob Faibussowitsch   PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1530b3bf805bSHong Zhang 
15319566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr, &nv));
15325f80ce2aSJacob Faibussowitsch   PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
15335e90f9d9SHong Zhang 
15349566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
15355e90f9d9SHong Zhang 
15365e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1537dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15385e90f9d9SHong Zhang 
15395e90f9d9SHong Zhang   /* scale the diagonal part */
1540dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
1541a30f8f8cSSatish Balay 
15425e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
15439566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1544dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
1545a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1546a30f8f8cSSatish Balay }
1547a30f8f8cSSatish Balay 
15489371c9d4SSatish Balay PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) {
1549f3566a2aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1550a30f8f8cSSatish Balay 
1551a30f8f8cSSatish Balay   PetscFunctionBegin;
15529566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
1553a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1554a30f8f8cSSatish Balay }
1555a30f8f8cSSatish Balay 
15566849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1557a30f8f8cSSatish Balay 
15589371c9d4SSatish Balay PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) {
1559a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1560a30f8f8cSSatish Balay   Mat           a, b, c, d;
1561ace3abfcSBarry Smith   PetscBool     flg;
1562a30f8f8cSSatish Balay 
1563a30f8f8cSSatish Balay   PetscFunctionBegin;
15649371c9d4SSatish Balay   a = matA->A;
15659371c9d4SSatish Balay   b = matA->B;
15669371c9d4SSatish Balay   c = matB->A;
15679371c9d4SSatish Balay   d = matB->B;
1568a30f8f8cSSatish Balay 
15699566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
1570*48a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
15711c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
1572a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1573a30f8f8cSSatish Balay }
1574a30f8f8cSSatish Balay 
15759371c9d4SSatish Balay PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) {
15764c7a3774SStefano Zampini   PetscBool isbaij;
15773c896bc6SHong Zhang 
15783c896bc6SHong Zhang   PetscFunctionBegin;
15799566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
15805f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
15813c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
15823c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
15839566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
15849566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
15859566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
15863c896bc6SHong Zhang   } else {
15874c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
15884c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
15894c7a3774SStefano Zampini 
15909566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
15919566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
15923c896bc6SHong Zhang   }
15939566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
15943c896bc6SHong Zhang   PetscFunctionReturn(0);
15953c896bc6SHong Zhang }
15963c896bc6SHong Zhang 
15979371c9d4SSatish Balay PetscErrorCode MatSetUp_MPISBAIJ(Mat A) {
1598273d9f13SBarry Smith   PetscFunctionBegin;
15999566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(A, A->rmap->bs, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL));
1600273d9f13SBarry Smith   PetscFunctionReturn(0);
1601273d9f13SBarry Smith }
1602a5e6ed63SBarry Smith 
16039371c9d4SSatish Balay PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) {
16044fe895cdSHong Zhang   Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
16054fe895cdSHong Zhang   PetscBLASInt  bnz, one                          = 1;
16064fe895cdSHong Zhang   Mat_SeqSBAIJ *xa, *ya;
16074fe895cdSHong Zhang   Mat_SeqBAIJ  *xb, *yb;
16084fe895cdSHong Zhang 
16094fe895cdSHong Zhang   PetscFunctionBegin;
16104fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16114fe895cdSHong Zhang     PetscScalar alpha = a;
16124fe895cdSHong Zhang     xa                = (Mat_SeqSBAIJ *)xx->A->data;
16134fe895cdSHong Zhang     ya                = (Mat_SeqSBAIJ *)yy->A->data;
16149566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1615792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
16164fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
16174fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
16189566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1619792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
16209566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1621ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
16229566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
16239566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
16249566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
16254fe895cdSHong Zhang   } else {
16264de5dceeSHong Zhang     Mat       B;
16274de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
16285f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
16299566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
16309566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
16319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
16329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
16339566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
16349566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
16359566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
16369566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
16379566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISBAIJ));
16389566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
16399566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
16409566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
16419566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
16429566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
16439566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
16449566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
16459566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
16469566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
16474fe895cdSHong Zhang   }
16484fe895cdSHong Zhang   PetscFunctionReturn(0);
16494fe895cdSHong Zhang }
16504fe895cdSHong Zhang 
16519371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) {
16521302d50aSBarry Smith   PetscInt  i;
1653afebec48SHong Zhang   PetscBool flg;
1654a5e6ed63SBarry Smith 
16556849ba73SBarry Smith   PetscFunctionBegin;
16569566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1657a5e6ed63SBarry Smith   for (i = 0; i < n; i++) {
16589566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i], icol[i], &flg));
1659*48a46eb9SPierre Jolivet     if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
16604dcd73b1SHong Zhang   }
1661a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1662a5e6ed63SBarry Smith }
1663a5e6ed63SBarry Smith 
16649371c9d4SSatish Balay PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) {
16657d68702bSBarry Smith   Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
16666f33a894SBarry Smith   Mat_SeqSBAIJ *aij  = (Mat_SeqSBAIJ *)maij->A->data;
16677d68702bSBarry Smith 
16687d68702bSBarry Smith   PetscFunctionBegin;
16696f33a894SBarry Smith   if (!Y->preallocated) {
16709566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
16716f33a894SBarry Smith   } else if (!aij->nz) {
1672b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
16739566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1674b83222d8SBarry Smith     aij->nonew = nonew;
16757d68702bSBarry Smith   }
16769566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
16777d68702bSBarry Smith   PetscFunctionReturn(0);
16787d68702bSBarry Smith }
16797d68702bSBarry Smith 
16809371c9d4SSatish Balay PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) {
16813b49f96aSBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16823b49f96aSBarry Smith 
16833b49f96aSBarry Smith   PetscFunctionBegin;
16845f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
16859566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
16863b49f96aSBarry Smith   if (d) {
16873b49f96aSBarry Smith     PetscInt rstart;
16889566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
16893b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
16903b49f96aSBarry Smith   }
16913b49f96aSBarry Smith   PetscFunctionReturn(0);
16923b49f96aSBarry Smith }
16933b49f96aSBarry Smith 
16949371c9d4SSatish Balay PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) {
1695a5b7ff6bSBarry Smith   PetscFunctionBegin;
1696a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ *)A->data)->A;
1697a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1698a5b7ff6bSBarry Smith }
16993b49f96aSBarry Smith 
1700a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17013964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1702a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1703a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1704a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
170597304618SKris Buschelman                                        /*  4*/ MatMultAdd_MPISBAIJ,
1706431c96f7SBarry Smith                                        MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1707431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1708f4259b30SLisandro Dalcin                                        NULL,
1709f4259b30SLisandro Dalcin                                        NULL,
1710f4259b30SLisandro Dalcin                                        NULL,
1711f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1712f4259b30SLisandro Dalcin                                        NULL,
1713f4259b30SLisandro Dalcin                                        NULL,
171441f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1715a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
171697304618SKris Buschelman                                        /* 15*/ MatGetInfo_MPISBAIJ,
1717a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1718a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1719a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1720a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
172197304618SKris Buschelman                                        /* 20*/ MatAssemblyBegin_MPISBAIJ,
1722a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1723a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1724a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1725f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1726f4259b30SLisandro Dalcin                                        NULL,
1727f4259b30SLisandro Dalcin                                        NULL,
1728f4259b30SLisandro Dalcin                                        NULL,
1729f4259b30SLisandro Dalcin                                        NULL,
17304994cf47SJed Brown                                        /* 29*/ MatSetUp_MPISBAIJ,
1731f4259b30SLisandro Dalcin                                        NULL,
1732f4259b30SLisandro Dalcin                                        NULL,
1733a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1734f4259b30SLisandro Dalcin                                        NULL,
1735d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_MPISBAIJ,
1736f4259b30SLisandro Dalcin                                        NULL,
1737f4259b30SLisandro Dalcin                                        NULL,
1738f4259b30SLisandro Dalcin                                        NULL,
1739f4259b30SLisandro Dalcin                                        NULL,
1740d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_MPISBAIJ,
17417dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1742d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1743a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
17443c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1745f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1746a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
17477d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1748f4259b30SLisandro Dalcin                                        NULL,
1749f4259b30SLisandro Dalcin                                        NULL,
1750f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1751f4259b30SLisandro Dalcin                                        NULL,
1752f4259b30SLisandro Dalcin                                        NULL,
1753f4259b30SLisandro Dalcin                                        NULL,
1754f4259b30SLisandro Dalcin                                        NULL,
1755f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
1756f4259b30SLisandro Dalcin                                        NULL,
1757a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1758f4259b30SLisandro Dalcin                                        NULL,
1759a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
17607dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1761f4259b30SLisandro Dalcin                                        NULL,
1762f4259b30SLisandro Dalcin                                        NULL,
1763f4259b30SLisandro Dalcin                                        NULL,
1764f4259b30SLisandro Dalcin                                        NULL,
1765f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1766f4259b30SLisandro Dalcin                                        NULL,
1767f4259b30SLisandro Dalcin                                        NULL,
1768f4259b30SLisandro Dalcin                                        NULL,
1769f4259b30SLisandro Dalcin                                        NULL,
1770d519adbfSMatthew Knepley                                        /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1771f4259b30SLisandro Dalcin                                        NULL,
177228d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1773f4259b30SLisandro Dalcin                                        NULL,
1774f4259b30SLisandro Dalcin                                        NULL,
1775f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
1776f4259b30SLisandro Dalcin                                        NULL,
1777f4259b30SLisandro Dalcin                                        NULL,
1778f4259b30SLisandro Dalcin                                        NULL,
1779f4259b30SLisandro Dalcin                                        NULL,
1780f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1781f4259b30SLisandro Dalcin                                        NULL,
1782f4259b30SLisandro Dalcin                                        NULL,
1783f4259b30SLisandro Dalcin                                        NULL,
17845bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1785f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1786f4259b30SLisandro Dalcin                                        NULL,
1787f4259b30SLisandro Dalcin                                        NULL,
1788f4259b30SLisandro Dalcin                                        NULL,
1789f4259b30SLisandro Dalcin                                        NULL,
1790f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1791f4259b30SLisandro Dalcin                                        NULL,
1792f4259b30SLisandro Dalcin                                        NULL,
1793f4259b30SLisandro Dalcin                                        NULL,
1794f4259b30SLisandro Dalcin                                        NULL,
1795f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1796f4259b30SLisandro Dalcin                                        NULL,
1797f4259b30SLisandro Dalcin                                        NULL,
1798f4259b30SLisandro Dalcin                                        NULL,
1799f4259b30SLisandro Dalcin                                        NULL,
1800f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1801f4259b30SLisandro Dalcin                                        NULL,
1802f4259b30SLisandro Dalcin                                        NULL,
18032726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1804f4259b30SLisandro Dalcin                                        NULL,
1805f4259b30SLisandro Dalcin                                        /*104*/ NULL,
180699cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1807d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1808d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
180995936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1810f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1811f4259b30SLisandro Dalcin                                        NULL,
1812f4259b30SLisandro Dalcin                                        NULL,
1813f4259b30SLisandro Dalcin                                        NULL,
18143b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1815f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1816f4259b30SLisandro Dalcin                                        NULL,
1817f4259b30SLisandro Dalcin                                        NULL,
1818f4259b30SLisandro Dalcin                                        NULL,
1819f4259b30SLisandro Dalcin                                        NULL,
1820f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1821f4259b30SLisandro Dalcin                                        NULL,
1822f4259b30SLisandro Dalcin                                        NULL,
1823f4259b30SLisandro Dalcin                                        NULL,
1824f4259b30SLisandro Dalcin                                        NULL,
1825f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1826f4259b30SLisandro Dalcin                                        NULL,
1827f4259b30SLisandro Dalcin                                        NULL,
1828f4259b30SLisandro Dalcin                                        NULL,
1829f4259b30SLisandro Dalcin                                        NULL,
1830f4259b30SLisandro Dalcin                                        /*129*/ NULL,
1831f4259b30SLisandro Dalcin                                        NULL,
1832f4259b30SLisandro Dalcin                                        NULL,
1833f4259b30SLisandro Dalcin                                        NULL,
1834f4259b30SLisandro Dalcin                                        NULL,
1835f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1836f4259b30SLisandro Dalcin                                        NULL,
1837f4259b30SLisandro Dalcin                                        NULL,
1838f4259b30SLisandro Dalcin                                        NULL,
1839f4259b30SLisandro Dalcin                                        NULL,
184046533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
1841f4259b30SLisandro Dalcin                                        NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
1843f4259b30SLisandro Dalcin                                        NULL,
1844f4259b30SLisandro Dalcin                                        NULL,
1845d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1846d70f29a3SPierre Jolivet                                        NULL,
1847d70f29a3SPierre Jolivet                                        NULL,
184899a7f59eSMark Adams                                        NULL,
184999a7f59eSMark Adams                                        NULL,
18507fb60732SBarry Smith                                        NULL,
18519371c9d4SSatish Balay                                        /*150*/ NULL};
1852a30f8f8cSSatish Balay 
18539371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) {
1854476417e5SBarry Smith   Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1855535b19f3SBarry Smith   PetscInt      i, mbs, Mbs;
18565d2a9ed1SStefano Zampini   PetscMPIInt   size;
1857a23d5eceSKris Buschelman 
1858a23d5eceSKris Buschelman   PetscFunctionBegin;
18599566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
18609566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
18619566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
18629566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
18635f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
18645f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1865899cda47SBarry Smith 
1866d0f46423SBarry Smith   mbs = B->rmap->n / bs;
1867d0f46423SBarry Smith   Mbs = B->rmap->N / bs;
18685f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1869a23d5eceSKris Buschelman 
1870d0f46423SBarry Smith   B->rmap->bs = bs;
1871a23d5eceSKris Buschelman   b->bs2      = bs * bs;
1872a23d5eceSKris Buschelman   b->mbs      = mbs;
1873a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1874de64b629SHong Zhang   b->nbs      = B->cmap->n / bs;
1875de64b629SHong Zhang   b->Nbs      = B->cmap->N / bs;
1876a23d5eceSKris Buschelman 
18779371c9d4SSatish Balay   for (i = 0; i <= b->size; i++) { b->rangebs[i] = B->rmap->range[i] / bs; }
1878d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
1879d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
1880a23d5eceSKris Buschelman 
1881d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
1882d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
1883a23d5eceSKris Buschelman 
1884cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
18859566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&b->colmap));
1886cb7b82ddSBarry Smith #else
18879566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
1888cb7b82ddSBarry Smith #endif
18899566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
18909566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
18919566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
18929566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
18939566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
18949566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
18959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
18969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
18979566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
1898cb7b82ddSBarry Smith 
1899cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
19009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
19019566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
19029566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
19039566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
19049566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
19059566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)B, (PetscObject)b->B));
1906cb7b82ddSBarry Smith 
1907526dfc15SBarry Smith   if (!B->preallocated) {
19089566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
19099566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
19109566063dSJacob Faibussowitsch     PetscCall(MatSetType(b->A, MATSEQSBAIJ));
19119566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)B, (PetscObject)b->A));
19129566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
1913526dfc15SBarry Smith   }
1914a23d5eceSKris Buschelman 
19159566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
19169566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
191726fbe8dcSKarl Rupp 
1918526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
1919cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
1920cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
1921a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1922a23d5eceSKris Buschelman }
1923a23d5eceSKris Buschelman 
19249371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) {
192502106b30SBarry Smith   PetscInt        m, rstart, cend;
1926f4259b30SLisandro Dalcin   PetscInt        i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
1927f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
1928f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
1929bb80cfbbSStefano Zampini   PetscBool       roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
19303bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
1931dfb205c3SBarry Smith 
1932dfb205c3SBarry Smith   PetscFunctionBegin;
19335f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
19349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
19359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
19369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19389566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
1939dfb205c3SBarry Smith   m      = B->rmap->n / bs;
1940dfb205c3SBarry Smith   rstart = B->rmap->rstart / bs;
1941dfb205c3SBarry Smith   cend   = B->cmap->rend / bs;
1942dfb205c3SBarry Smith 
19435f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
19449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
1945dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
1946dfb205c3SBarry Smith     nz = ii[i + 1] - ii[i];
19475f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
19480cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
1949dfb205c3SBarry Smith     JJ = jj + ii[i];
19500cd7f59aSBarry Smith     bd = 0;
1951dfb205c3SBarry Smith     for (j = 0; j < nz; j++) {
19520cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
1953dfb205c3SBarry Smith       JJ++;
19540cd7f59aSBarry Smith       bd++;
1955dfb205c3SBarry Smith     }
1956dfb205c3SBarry Smith     d = 0;
1957dfb205c3SBarry Smith     for (; j < nz; j++) {
1958dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1959dfb205c3SBarry Smith       d++;
1960dfb205c3SBarry Smith     }
1961dfb205c3SBarry Smith     d_nnz[i] = d;
19620cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
19630cd7f59aSBarry Smith     nz       = nz - bd;
19640cd7f59aSBarry Smith     nz_max   = PetscMax(nz_max, nz);
1965dfb205c3SBarry Smith   }
19669566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
19679566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
19689566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
1969dfb205c3SBarry Smith 
1970dfb205c3SBarry Smith   values = (PetscScalar *)V;
1971*48a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
1972dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
1973dfb205c3SBarry Smith     PetscInt        row   = i + rstart;
1974dfb205c3SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
1975dfb205c3SBarry Smith     const PetscInt *icols = jj + ii[i];
1976bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
1977dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
19789566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
1979bb80cfbbSStefano Zampini     } else { /* block ordering does not match so we can only insert one block at a time. */
1980bb80cfbbSStefano Zampini       PetscInt j;
19810cd7f59aSBarry Smith       for (j = 0; j < ncols; j++) {
19820cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
19839566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
19840cd7f59aSBarry Smith       }
19850cd7f59aSBarry Smith     }
1986dfb205c3SBarry Smith   }
1987dfb205c3SBarry Smith 
19889566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
19893bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
19903bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
19919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
19933bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
19943bd0feecSPierre Jolivet 
19959566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
1996dfb205c3SBarry Smith   PetscFunctionReturn(0);
1997dfb205c3SBarry Smith }
1998dfb205c3SBarry Smith 
19990bad9183SKris Buschelman /*MC
2000fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2001828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2002828413b8SBarry Smith    the matrix is stored.
2003828413b8SBarry Smith 
2004828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2005828413b8SBarry Smith    can call MatSetOption(Mat, MAT_HERMITIAN);
20060bad9183SKris Buschelman 
20070bad9183SKris Buschelman    Options Database Keys:
20080bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
20090bad9183SKris Buschelman 
2010476417e5SBarry Smith    Notes:
2011476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2012476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2013476417e5SBarry Smith 
20140bad9183SKris Buschelman    Level: beginner
20150bad9183SKris Buschelman 
2016db781477SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
20170bad9183SKris Buschelman M*/
20180bad9183SKris Buschelman 
20199371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) {
2020b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
202194ae4db5SBarry Smith   PetscBool     flg = PETSC_FALSE;
2022b5df2d14SHong Zhang 
2023b5df2d14SHong Zhang   PetscFunctionBegin;
20249566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(B, &b));
2025b0a32e0cSBarry Smith   B->data = (void *)b;
20269566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps)));
2027b5df2d14SHong Zhang 
2028b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2029b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2030b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2031b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
203226fbe8dcSKarl Rupp 
20339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
20349566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2035b5df2d14SHong Zhang 
2036b5df2d14SHong Zhang   /* build local table of row and column ownerships */
20379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2038b5df2d14SHong Zhang 
2039b5df2d14SHong Zhang   /* build cache for off array entries formed */
20409566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
204126fbe8dcSKarl Rupp 
2042b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
20430298fd71SBarry Smith   b->colmap      = NULL;
20440298fd71SBarry Smith   b->garray      = NULL;
2045b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2046b5df2d14SHong Zhang 
2047b5df2d14SHong Zhang   /* stuff used in block assembly */
2048f4259b30SLisandro Dalcin   b->barray = NULL;
2049b5df2d14SHong Zhang 
2050b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2051f4259b30SLisandro Dalcin   b->lvec    = NULL;
2052f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2053f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2054f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2055f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2056f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2057f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2058f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2059b5df2d14SHong Zhang 
2060b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2061f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2062f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2063b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2064b5df2d14SHong Zhang 
2065b5df2d14SHong Zhang   /* hash table stuff */
2066f4259b30SLisandro Dalcin   b->ht           = NULL;
2067f4259b30SLisandro Dalcin   b->hd           = NULL;
2068b5df2d14SHong Zhang   b->ht_size      = 0;
2069b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2070b5df2d14SHong Zhang   b->ht_fact      = 0;
2071b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2072b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2073b5df2d14SHong Zhang 
20747dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
20757a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
20767a868f3eSHong Zhang 
2077f4259b30SLisandro Dalcin   b->in_loc = NULL;
2078f4259b30SLisandro Dalcin   b->v_loc  = NULL;
207959ffdab8SBarry Smith   b->n_loc  = 0;
208094ae4db5SBarry Smith 
20819566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
20829566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
20839566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
20849566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
20856214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
20869566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
20876214f412SHong Zhang #endif
2088d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
20899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2090d24d4204SJose E. Roman #endif
20919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
20929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2093aa5a9175SDahai Guo 
2094b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_TRUE;
2095b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
2096b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_TRUE;
2097b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_TRUE;
2098eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
2099b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_FALSE;
2100eb1ec7c1SStefano Zampini #else
2101b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_TRUE;
2102eb1ec7c1SStefano Zampini #endif
210313647f61SHong Zhang 
21049566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2105d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
21069566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
210794ae4db5SBarry Smith   if (flg) {
210894ae4db5SBarry Smith     PetscReal fact = 1.39;
21099566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
21109566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
211194ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
21129566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
21139566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
211494ae4db5SBarry Smith   }
2115d0609cedSBarry Smith   PetscOptionsEnd();
2116b5df2d14SHong Zhang   PetscFunctionReturn(0);
2117b5df2d14SHong Zhang }
2118b5df2d14SHong Zhang 
2119209238afSKris Buschelman /*MC
2120002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2121209238afSKris Buschelman 
2122209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2123209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2124209238afSKris Buschelman 
2125209238afSKris Buschelman    Options Database Keys:
2126209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2127209238afSKris Buschelman 
2128209238afSKris Buschelman   Level: beginner
2129209238afSKris Buschelman 
2130db781477SPatrick Sanan .seealso: `MatCreateSBAIJ`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2131209238afSKris Buschelman M*/
2132209238afSKris Buschelman 
2133b5df2d14SHong Zhang /*@C
2134b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2135b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2136b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2137b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2138b5df2d14SHong Zhang 
2139b5df2d14SHong Zhang    Collective on Mat
2140b5df2d14SHong Zhang 
2141b5df2d14SHong Zhang    Input Parameters:
21421c4f3114SJed Brown +  B - the matrix
2143bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2144bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2145b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2146b5df2d14SHong Zhang            submatrix  (same for all local rows)
2147b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
21486d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
21490298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
215095742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2151b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2152b5df2d14SHong Zhang            submatrix (same for all local rows).
2153b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2154c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
21550298fd71SBarry Smith            (possibly different for each block row) or NULL.
2156b5df2d14SHong Zhang 
2157b5df2d14SHong Zhang    Options Database Keys:
2158a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2159b5df2d14SHong Zhang                      block calculations (much slower)
2160a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2161b5df2d14SHong Zhang 
2162b5df2d14SHong Zhang    Notes:
2163b5df2d14SHong Zhang 
2164b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2165b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2166b5df2d14SHong Zhang 
216749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
216849a6f317SBarry Smith 
2169b5df2d14SHong Zhang    Storage Information:
2170b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2171b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2172b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2173b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2174b5df2d14SHong Zhang 
2175b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2176b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
21770298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2178b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2179b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2180b5df2d14SHong Zhang 
2181aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2182aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2183aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2184aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2185aa95bbe8SBarry Smith 
2186b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2187b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2188b5df2d14SHong Zhang 
2189b5df2d14SHong Zhang .vb
2190b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2191a4b1a0f6SJed Brown           --------------------------
2192c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2193c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2194c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2195a4b1a0f6SJed Brown           --------------------------
2196b5df2d14SHong Zhang .ve
2197b5df2d14SHong Zhang 
2198b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2199b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
22006d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
22016d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2202b5df2d14SHong Zhang 
22036d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22046d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2205c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2206c2fc9fa9SBarry Smith 
2207b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2208b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2209b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2210b5df2d14SHong Zhang    matrices.
2211b5df2d14SHong Zhang 
2212b5df2d14SHong Zhang    Level: intermediate
2213b5df2d14SHong Zhang 
2214db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2215b5df2d14SHong Zhang @*/
22169371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) {
2217b5df2d14SHong Zhang   PetscFunctionBegin;
22186ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
22196ba663aaSJed Brown   PetscValidType(B, 1);
22206ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2221cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
2222b5df2d14SHong Zhang   PetscFunctionReturn(0);
2223b5df2d14SHong Zhang }
2224b5df2d14SHong Zhang 
2225a30f8f8cSSatish Balay /*@C
222669b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2227a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2228a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2229a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2230a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2231a30f8f8cSSatish Balay 
2232d083f849SBarry Smith    Collective
2233a30f8f8cSSatish Balay 
2234a30f8f8cSSatish Balay    Input Parameters:
2235a30f8f8cSSatish Balay +  comm - MPI communicator
2236bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2237bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2238a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2239a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2240a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2241a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2242a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2243a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2244a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2245a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2246a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2247a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2248a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
22496d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
22500298fd71SBarry Smith            (possibly different for each block block row) or NULL.
225195742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
225295742e49SBarry Smith            set its value even if it is zero.
2253a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2254a30f8f8cSSatish Balay            submatrix (same for all local rows).
2255a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2256a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
22570298fd71SBarry Smith            each block row) or NULL.
2258a30f8f8cSSatish Balay 
2259a30f8f8cSSatish Balay    Output Parameter:
2260a30f8f8cSSatish Balay .  A - the matrix
2261a30f8f8cSSatish Balay 
2262a30f8f8cSSatish Balay    Options Database Keys:
2263a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2264a30f8f8cSSatish Balay                      block calculations (much slower)
2265a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2266a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2267a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2268a30f8f8cSSatish Balay 
2269175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2270f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2271175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2272175b88e8SBarry Smith 
2273a30f8f8cSSatish Balay    Notes:
2274d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
22756d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2276d1be2dadSMatthew Knepley 
2277a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2278a30f8f8cSSatish Balay    (possibly both).
2279a30f8f8cSSatish Balay 
2280a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2281a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2282a30f8f8cSSatish Balay 
228349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
228449a6f317SBarry Smith 
2285a30f8f8cSSatish Balay    Storage Information:
2286a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2287a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2288a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2289a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2290a30f8f8cSSatish Balay 
2291a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2292a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
22930298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2294a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2295a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2296a30f8f8cSSatish Balay 
2297a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2298a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2299a30f8f8cSSatish Balay 
2300a30f8f8cSSatish Balay .vb
2301a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2302a4b1a0f6SJed Brown           --------------------------
2303c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2304c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2305c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2306a4b1a0f6SJed Brown           --------------------------
2307a30f8f8cSSatish Balay .ve
2308a30f8f8cSSatish Balay 
2309a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2310a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
23116d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23126d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2313a30f8f8cSSatish Balay 
23146d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23156d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2316a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2317a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2318a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2319a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2320a30f8f8cSSatish Balay    matrices.
2321a30f8f8cSSatish Balay 
2322a30f8f8cSSatish Balay    Level: intermediate
2323a30f8f8cSSatish Balay 
2324db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`
2325a30f8f8cSSatish Balay @*/
2326a30f8f8cSSatish Balay 
23279371c9d4SSatish Balay PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) {
23281302d50aSBarry Smith   PetscMPIInt size;
2329a30f8f8cSSatish Balay 
2330a30f8f8cSSatish Balay   PetscFunctionBegin;
23319566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
23329566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
23339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2334273d9f13SBarry Smith   if (size > 1) {
23359566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISBAIJ));
23369566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2337273d9f13SBarry Smith   } else {
23389566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSBAIJ));
23399566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2340273d9f13SBarry Smith   }
2341a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2342a30f8f8cSSatish Balay }
2343a30f8f8cSSatish Balay 
23449371c9d4SSatish Balay static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) {
2345a30f8f8cSSatish Balay   Mat           mat;
2346a30f8f8cSSatish Balay   Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2347d0f46423SBarry Smith   PetscInt      len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2348387bc808SHong Zhang   PetscScalar  *array;
2349a30f8f8cSSatish Balay 
2350a30f8f8cSSatish Balay   PetscFunctionBegin;
2351f4259b30SLisandro Dalcin   *newmat = NULL;
235226fbe8dcSKarl Rupp 
23539566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
23549566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
23559566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
23569566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
23579566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2358e1b6402fSHong Zhang 
2359d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2360273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
236182327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
23627fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
23637fff6886SHong Zhang 
2364b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ *)mat->data;
2365a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2366a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2367a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2368a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2369a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2370a30f8f8cSSatish Balay 
2371a30f8f8cSSatish Balay   a->size         = oldmat->size;
2372a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2373a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2374a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2375f4259b30SLisandro Dalcin   a->rowindices   = NULL;
2376f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
2377a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2378f4259b30SLisandro Dalcin   a->barray       = NULL;
2379899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2380899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2381899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2382899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2383a30f8f8cSSatish Balay 
2384a30f8f8cSSatish Balay   /* hash table stuff */
2385f4259b30SLisandro Dalcin   a->ht           = NULL;
2386f4259b30SLisandro Dalcin   a->hd           = NULL;
2387a30f8f8cSSatish Balay   a->ht_size      = 0;
2388a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2389a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2390a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2391a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2392a30f8f8cSSatish Balay 
23939566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2394a30f8f8cSSatish Balay   if (oldmat->colmap) {
2395a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
23969566063dSJacob Faibussowitsch     PetscCall(PetscTableCreateCopy(oldmat->colmap, &a->colmap));
2397a30f8f8cSSatish Balay #else
23989566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
23999566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat, (a->Nbs) * sizeof(PetscInt)));
24009566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2401a30f8f8cSSatish Balay #endif
2402f4259b30SLisandro Dalcin   } else a->colmap = NULL;
2403387bc808SHong Zhang 
2404a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) {
24059566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len, &a->garray));
24069566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat, len * sizeof(PetscInt)));
24079566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2408f4259b30SLisandro Dalcin   } else a->garray = NULL;
2409a30f8f8cSSatish Balay 
24109566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
24119566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
24129566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->lvec));
24139566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
24149566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->Mvctx));
241582327fa8SHong Zhang 
24169566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
24179566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec0));
24189566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
24199566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec1));
2420387bc808SHong Zhang 
24219566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(a->slvec1, &nt));
24229566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec1, &array));
24239566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
24249566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
24259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec1, &array));
24269566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &array));
24279566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
24289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &array));
24299566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec0));
24309566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec1));
24319566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec0b));
24329566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec1a));
24339566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec1b));
2434387bc808SHong Zhang 
2435387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
24369566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2437387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
24389566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->sMvctx));
243982327fa8SHong Zhang 
24409566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
24419566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->A));
24429566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
24439566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->B));
24449566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2445a30f8f8cSSatish Balay   *newmat = mat;
2446a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2447a30f8f8cSSatish Balay }
2448a30f8f8cSSatish Balay 
2449618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2450618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2451618cc2edSLisandro Dalcin 
24529371c9d4SSatish Balay PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) {
24537f489da9SVaclav Hapla   PetscBool isbinary;
245495936485SShri Abhyankar 
245595936485SShri Abhyankar   PetscFunctionBegin;
24569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
24575f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
24589566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
245995936485SShri Abhyankar   PetscFunctionReturn(0);
246095936485SShri Abhyankar }
246195936485SShri Abhyankar 
2462dcf5cc72SBarry Smith /*XXXXX@
2463a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2464a30f8f8cSSatish Balay 
2465a30f8f8cSSatish Balay    Input Parameters:
2466a30f8f8cSSatish Balay .  mat  - the matrix
2467a30f8f8cSSatish Balay .  fact - factor
2468a30f8f8cSSatish Balay 
2469c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2470a30f8f8cSSatish Balay 
2471a30f8f8cSSatish Balay    Level: advanced
2472a30f8f8cSSatish Balay 
2473a30f8f8cSSatish Balay   Notes:
2474a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2475a30f8f8cSSatish Balay 
2476db781477SPatrick Sanan .seealso: `MatSetOption()`
2477dcf5cc72SBarry Smith @XXXXX*/
2478dcf5cc72SBarry Smith 
24799371c9d4SSatish Balay PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) {
248024d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2481f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ *)(a->B)->data;
2482ca54ac64SHong Zhang   PetscReal     atmp;
248387828ca2SBarry Smith   PetscReal    *work, *svalues, *rvalues;
24841302d50aSBarry Smith   PetscInt      i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
24851302d50aSBarry Smith   PetscMPIInt   rank, size;
24861302d50aSBarry Smith   PetscInt     *rowners_bs, dest, count, source;
248787828ca2SBarry Smith   PetscScalar  *va;
24888a1c53f2SBarry Smith   MatScalar    *ba;
2489f4c0e9e4SHong Zhang   MPI_Status    stat;
249024d5174aSHong Zhang 
249124d5174aSHong Zhang   PetscFunctionBegin;
24925f80ce2aSJacob Faibussowitsch   PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
24939566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
24949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &va));
2495f4c0e9e4SHong Zhang 
24969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
24979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2498f4c0e9e4SHong Zhang 
2499d0f46423SBarry Smith   bs  = A->rmap->bs;
2500f4c0e9e4SHong Zhang   mbs = a->mbs;
2501f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2502f4c0e9e4SHong Zhang   ba  = b->a;
2503f4c0e9e4SHong Zhang   bi  = b->i;
2504f4c0e9e4SHong Zhang   bj  = b->j;
2505f4c0e9e4SHong Zhang 
2506f4c0e9e4SHong Zhang   /* find ownerships */
2507d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2508f4c0e9e4SHong Zhang 
2509f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
25109566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs * Mbs, &work));
2511f4c0e9e4SHong Zhang 
2512f4c0e9e4SHong Zhang   /* row_max for B */
2513b8475685SHong Zhang   if (rank != size - 1) {
2514f4c0e9e4SHong Zhang     for (i = 0; i < mbs; i++) {
25159371c9d4SSatish Balay       ncols = bi[1] - bi[0];
25169371c9d4SSatish Balay       bi++;
2517f4c0e9e4SHong Zhang       brow = bs * i;
2518f4c0e9e4SHong Zhang       for (j = 0; j < ncols; j++) {
2519f4c0e9e4SHong Zhang         bcol = bs * (*bj);
2520f4c0e9e4SHong Zhang         for (kcol = 0; kcol < bs; kcol++) {
2521ca54ac64SHong Zhang           col = bcol + kcol;           /* local col index */
252204d41228SHong Zhang           col += rowners_bs[rank + 1]; /* global col index */
2523f4c0e9e4SHong Zhang           for (krow = 0; krow < bs; krow++) {
25249371c9d4SSatish Balay             atmp = PetscAbsScalar(*ba);
25259371c9d4SSatish Balay             ba++;
2526ca54ac64SHong Zhang             row = brow + krow; /* local row index */
2527ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2528f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2529f4c0e9e4SHong Zhang           }
2530f4c0e9e4SHong Zhang         }
2531f4c0e9e4SHong Zhang         bj++;
2532f4c0e9e4SHong Zhang       }
2533f4c0e9e4SHong Zhang     }
2534f4c0e9e4SHong Zhang 
2535f4c0e9e4SHong Zhang     /* send values to its owners */
2536f4c0e9e4SHong Zhang     for (dest = rank + 1; dest < size; dest++) {
2537f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2538ca54ac64SHong Zhang       count   = rowners_bs[dest + 1] - rowners_bs[dest];
25399566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2540ca54ac64SHong Zhang     }
2541f4c0e9e4SHong Zhang   }
2542f4c0e9e4SHong Zhang 
2543f4c0e9e4SHong Zhang   /* receive values */
2544ca54ac64SHong Zhang   if (rank) {
2545f4c0e9e4SHong Zhang     rvalues = work;
2546ca54ac64SHong Zhang     count   = rowners_bs[rank + 1] - rowners_bs[rank];
2547f4c0e9e4SHong Zhang     for (source = 0; source < rank; source++) {
25489566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2549f4c0e9e4SHong Zhang       /* process values */
2550f4c0e9e4SHong Zhang       for (i = 0; i < count; i++) {
2551ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2552f4c0e9e4SHong Zhang       }
2553f4c0e9e4SHong Zhang     }
2554ca54ac64SHong Zhang   }
2555f4c0e9e4SHong Zhang 
25569566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &va));
25579566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
255824d5174aSHong Zhang   PetscFunctionReturn(0);
255924d5174aSHong Zhang }
25602798e883SHong Zhang 
25619371c9d4SSatish Balay PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) {
25622798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ *)matin->data;
2563d0f46423SBarry Smith   PetscInt           mbs = mat->mbs, bs = matin->rmap->bs;
25643649974fSBarry Smith   PetscScalar       *x, *ptr, *from;
2565ffe4fb16SHong Zhang   Vec                bb1;
25663649974fSBarry Smith   const PetscScalar *b;
2567ffe4fb16SHong Zhang 
2568ffe4fb16SHong Zhang   PetscFunctionBegin;
25695f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
25705f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2571ffe4fb16SHong Zhang 
2572a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
25739566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2574a2b30743SBarry Smith     PetscFunctionReturn(0);
2575a2b30743SBarry Smith   }
2576a2b30743SBarry Smith 
2577ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2578ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
25799566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2580ffe4fb16SHong Zhang       its--;
2581ffe4fb16SHong Zhang     }
2582ffe4fb16SHong Zhang 
25839566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &bb1));
2584ffe4fb16SHong Zhang     while (its--) {
2585ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
25869566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2587ffe4fb16SHong Zhang 
2588ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25899566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0, &ptr));
25909566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
25919566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, x, bs * mbs));
25929566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2593ffe4fb16SHong Zhang 
25949566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0, -1.0));
2595ffe4fb16SHong Zhang 
2596ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25979566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1, &ptr));
25989566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
25999566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, b, bs * mbs));
26009566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2601ffe4fb16SHong Zhang 
2602ffe4fb16SHong Zhang       /* set slvec1b = 0 */
26039566063dSJacob Faibussowitsch       PetscCall(VecSet(mat->slvec1b, 0.0));
2604ffe4fb16SHong Zhang 
26059566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26069566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
26079566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
26089566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2609ffe4fb16SHong Zhang 
2610ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
26119566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2612ffe4fb16SHong Zhang 
2613ffe4fb16SHong Zhang       /* local diagonal sweep */
26149566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2615ffe4fb16SHong Zhang     }
26169566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2617fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26189566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2619fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26209566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2621fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2622fa22f6d0SBarry Smith     Vec                xx1;
2623ace3abfcSBarry Smith     PetscBool          hasop;
262420f1ed55SBarry Smith     const PetscScalar *diag;
2625887ee2caSBarry Smith     PetscScalar       *sl, scale = (omega - 2.0) / omega;
262620f1ed55SBarry Smith     PetscInt           i, n;
2627fa22f6d0SBarry Smith 
2628fa22f6d0SBarry Smith     if (!mat->xx1) {
26299566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->xx1));
26309566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->bb1));
2631fa22f6d0SBarry Smith     }
2632fa22f6d0SBarry Smith     xx1 = mat->xx1;
2633fa22f6d0SBarry Smith     bb1 = mat->bb1;
2634fa22f6d0SBarry Smith 
26359566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2636fa22f6d0SBarry Smith 
2637fa22f6d0SBarry Smith     if (!mat->diag) {
2638effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26399566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
26409566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
2641fa22f6d0SBarry Smith     }
26429566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2643fa22f6d0SBarry Smith 
2644fa22f6d0SBarry Smith     if (hasop) {
26459566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
26469566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a, scale, bb));
264720f1ed55SBarry Smith     } else {
264820f1ed55SBarry Smith       /*
264920f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
26509566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
26519566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
265220f1ed55SBarry Smith       */
26539566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a, &sl));
26549566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag, &diag));
26559566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26569566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26579566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx, &n));
2658887ee2caSBarry Smith       if (omega == 1.0) {
265926fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
26609566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * n));
2661887ee2caSBarry Smith       } else {
266226fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
26639566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0 * n));
2664887ee2caSBarry Smith       }
26659566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a, &sl));
26669566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag, &diag));
26679566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
26689566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
266920f1ed55SBarry Smith     }
2670fa22f6d0SBarry Smith 
2671fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
26729566063dSJacob Faibussowitsch     PetscCall(VecSet(mat->slvec1b, 0.0));
26739566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
26749566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0, &from));
26759566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx, &x));
26769566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from, x, bs * mbs));
26779566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0, &from));
26789566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx, &x));
26799566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26809566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26819566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2682fa22f6d0SBarry Smith 
2683fa22f6d0SBarry Smith     /* local sweep */
26849566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
26859566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
2686f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
2687ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2688ffe4fb16SHong Zhang }
2689ffe4fb16SHong Zhang 
2690dfb205c3SBarry Smith /*@
2691dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2692dfb205c3SBarry Smith          CSR format the local rows.
2693dfb205c3SBarry Smith 
2694d083f849SBarry Smith    Collective
2695dfb205c3SBarry Smith 
2696dfb205c3SBarry Smith    Input Parameters:
2697dfb205c3SBarry Smith +  comm - MPI communicator
2698dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2699dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2700dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2701dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2702dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2703dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2704dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2705483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2706dfb205c3SBarry Smith .   j - column indices
2707dfb205c3SBarry Smith -   a - matrix values
2708dfb205c3SBarry Smith 
2709dfb205c3SBarry Smith    Output Parameter:
2710dfb205c3SBarry Smith .   mat - the matrix
2711dfb205c3SBarry Smith 
2712dfb205c3SBarry Smith    Level: intermediate
2713dfb205c3SBarry Smith 
2714dfb205c3SBarry Smith    Notes:
2715dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2716dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2717dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2718dfb205c3SBarry Smith 
2719dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2720dfb205c3SBarry Smith 
2721db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2722db781477SPatrick Sanan           `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
2723dfb205c3SBarry Smith @*/
27249371c9d4SSatish Balay PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) {
2725dfb205c3SBarry Smith   PetscFunctionBegin;
27265f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
27275f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
27289566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
27299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
27309566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPISBAIJ));
27319566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
2732dfb205c3SBarry Smith   PetscFunctionReturn(0);
2733dfb205c3SBarry Smith }
2734dfb205c3SBarry Smith 
2735dfb205c3SBarry Smith /*@C
2736664954b6SBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values
2737dfb205c3SBarry Smith 
2738d083f849SBarry Smith    Collective
2739dfb205c3SBarry Smith 
2740dfb205c3SBarry Smith    Input Parameters:
27411c4f3114SJed Brown +  B - the matrix
2742dfb205c3SBarry Smith .  bs - the block size
2743dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2744dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2745dfb205c3SBarry Smith -  v - optional values in the matrix
2746dfb205c3SBarry Smith 
2747664954b6SBarry Smith    Level: advanced
2748664954b6SBarry Smith 
2749664954b6SBarry Smith    Notes:
27500cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
27510cd7f59aSBarry Smith    and usually the numerical values as well
27520cd7f59aSBarry Smith 
275350c5228eSBarry Smith    Any entries below the diagonal are ignored
2754dfb205c3SBarry Smith 
2755db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`
2756dfb205c3SBarry Smith @*/
27579371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) {
2758dfb205c3SBarry Smith   PetscFunctionBegin;
2759cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
2760dfb205c3SBarry Smith   PetscFunctionReturn(0);
2761dfb205c3SBarry Smith }
2762dfb205c3SBarry Smith 
27639371c9d4SSatish Balay PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) {
276410c56fdeSHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
276510c56fdeSHong Zhang   PetscInt    *indx;
276610c56fdeSHong Zhang   PetscScalar *values;
2767dfb205c3SBarry Smith 
27684dcd73b1SHong Zhang   PetscFunctionBegin;
27699566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
277010c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
277110c56fdeSHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2772de25e9cbSPierre Jolivet     PetscInt     *dnz, *onz, mbs, Nbs, nbs;
277310c56fdeSHong Zhang     PetscInt     *bindx, rmax = a->rmax, j;
2774de25e9cbSPierre Jolivet     PetscMPIInt   rank, size;
27754dcd73b1SHong Zhang 
27769566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
27779371c9d4SSatish Balay     mbs = m / bs;
27789371c9d4SSatish Balay     Nbs = N / cbs;
2779*48a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2780da91a574SPierre Jolivet     nbs = n / cbs;
27814dcd73b1SHong Zhang 
27829566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
2783d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2784de25e9cbSPierre Jolivet 
27859566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
27869566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
2787de25e9cbSPierre Jolivet     if (rank == size - 1) {
2788de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
27895f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2790de25e9cbSPierre Jolivet     }
2791de25e9cbSPierre Jolivet 
2792d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
27939566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
279410c56fdeSHong Zhang     for (i = 0; i < mbs; i++) {
27959566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
27964dcd73b1SHong Zhang       nnz = nnz / bs;
27974dcd73b1SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
27989566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
27999566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
28004dcd73b1SHong Zhang     }
28019566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28029566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
28034dcd73b1SHong Zhang 
28049566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
28059566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
28069566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
28079566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATSBAIJ));
28089566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
28099566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2810d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
28114dcd73b1SHong Zhang   }
28124dcd73b1SHong Zhang 
281310c56fdeSHong Zhang   /* numeric phase */
28149566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28159566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
28164dcd73b1SHong Zhang 
28179566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
28184dcd73b1SHong Zhang   for (i = 0; i < m; i++) {
28199566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28204dcd73b1SHong Zhang     Ii = i + rstart;
28219566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
28229566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28234dcd73b1SHong Zhang   }
28249566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28259566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
28269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
28274dcd73b1SHong Zhang   PetscFunctionReturn(0);
28284dcd73b1SHong Zhang }
2829