1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 96214f412SHong Zhang #endif 10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 12d24d4204SJose E. Roman #endif 13b147fbf3SStefano Zampini 14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 159371c9d4SSatish Balay static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) { 16b147fbf3SStefano Zampini Mat preallocator; 17b147fbf3SStefano Zampini PetscInt r, rstart, rend; 18b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 19b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 20b147fbf3SStefano Zampini 21b147fbf3SStefano Zampini PetscFunctionBegin; 22b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 23b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 24b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 25b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 269566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 275f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 28b147fbf3SStefano Zampini } 29b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 309566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 319566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 329566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 339566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 349566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 359566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 369566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 379566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 389566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 39b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 40b147fbf3SStefano Zampini PetscInt ncols; 41b147fbf3SStefano Zampini const PetscInt *row; 42b147fbf3SStefano Zampini const PetscScalar *vals; 43b147fbf3SStefano Zampini 44b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 459566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 469566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 47*48a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 489566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 49b147fbf3SStefano Zampini } 50b147fbf3SStefano Zampini } 519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 539566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 55b147fbf3SStefano Zampini PetscFunctionReturn(0); 56b147fbf3SStefano Zampini } 57b147fbf3SStefano Zampini 589371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) { 59b147fbf3SStefano Zampini Mat B; 60b147fbf3SStefano Zampini PetscInt r; 61b147fbf3SStefano Zampini 62b147fbf3SStefano Zampini PetscFunctionBegin; 63b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 6428d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 65b147fbf3SStefano Zampini PetscInt bs; 66b147fbf3SStefano Zampini 679566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 699566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 709566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 719566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 729566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 739566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 7528d58a37SPierre Jolivet if (!isdense) { 769566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 779566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 789566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 7928d58a37SPierre Jolivet } else { 809566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 8128d58a37SPierre Jolivet } 8228d58a37SPierre Jolivet } else { 8328d58a37SPierre Jolivet B = *newmat; 849566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 8528d58a37SPierre Jolivet } 86b147fbf3SStefano Zampini 879566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 88b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 89b147fbf3SStefano Zampini PetscInt ncols; 90b147fbf3SStefano Zampini const PetscInt *row; 91b147fbf3SStefano Zampini const PetscScalar *vals; 92b147fbf3SStefano Zampini 939566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 949566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 95eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 96b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 97eb1ec7c1SStefano Zampini PetscInt i; 98*48a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 99eb1ec7c1SStefano Zampini } else { 1009566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 101eb1ec7c1SStefano Zampini } 102eb1ec7c1SStefano Zampini #else 1039566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 104eb1ec7c1SStefano Zampini #endif 1059566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 106b147fbf3SStefano Zampini } 1079566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 110b147fbf3SStefano Zampini 111b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1129566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 113b147fbf3SStefano Zampini } else { 114b147fbf3SStefano Zampini *newmat = B; 115b147fbf3SStefano Zampini } 116b147fbf3SStefano Zampini PetscFunctionReturn(0); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 1199371c9d4SSatish Balay PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) { 120f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 121a30f8f8cSSatish Balay 122a30f8f8cSSatish Balay PetscFunctionBegin; 1239566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1249566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 125a30f8f8cSSatish Balay PetscFunctionReturn(0); 126a30f8f8cSSatish Balay } 127a30f8f8cSSatish Balay 1289371c9d4SSatish Balay PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) { 129f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay PetscFunctionBegin; 1329566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1339566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 134a30f8f8cSSatish Balay PetscFunctionReturn(0); 135a30f8f8cSSatish Balay } 136a30f8f8cSSatish Balay 137d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 138a30f8f8cSSatish Balay { \ 139a30f8f8cSSatish Balay brow = row / bs; \ 1409371c9d4SSatish Balay rp = aj + ai[brow]; \ 1419371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 1429371c9d4SSatish Balay rmax = aimax[brow]; \ 1439371c9d4SSatish Balay nrow = ailen[brow]; \ 144a30f8f8cSSatish Balay bcol = col / bs; \ 1459371c9d4SSatish Balay ridx = row % bs; \ 1469371c9d4SSatish Balay cidx = col % bs; \ 1479371c9d4SSatish Balay low = 0; \ 1489371c9d4SSatish Balay high = nrow; \ 149a30f8f8cSSatish Balay while (high - low > 3) { \ 150a30f8f8cSSatish Balay t = (low + high) / 2; \ 151a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 152a30f8f8cSSatish Balay else low = t; \ 153a30f8f8cSSatish Balay } \ 154a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 155a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 156a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 157a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 158a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 159a30f8f8cSSatish Balay else *bap = value; \ 160a30f8f8cSSatish Balay goto a_noinsert; \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay } \ 163a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 1645f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 165fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 166a30f8f8cSSatish Balay N = nrow++ - 1; \ 167a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 1689566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1699566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1709566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 171a30f8f8cSSatish Balay rp[_i] = bcol; \ 172a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 173e56f5c9eSBarry Smith A->nonzerostate++; \ 174a30f8f8cSSatish Balay a_noinsert:; \ 175a30f8f8cSSatish Balay ailen[brow] = nrow; \ 176a30f8f8cSSatish Balay } 177e5e170daSBarry Smith 178d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 179a30f8f8cSSatish Balay { \ 180a30f8f8cSSatish Balay brow = row / bs; \ 1819371c9d4SSatish Balay rp = bj + bi[brow]; \ 1829371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 1839371c9d4SSatish Balay rmax = bimax[brow]; \ 1849371c9d4SSatish Balay nrow = bilen[brow]; \ 185a30f8f8cSSatish Balay bcol = col / bs; \ 1869371c9d4SSatish Balay ridx = row % bs; \ 1879371c9d4SSatish Balay cidx = col % bs; \ 1889371c9d4SSatish Balay low = 0; \ 1899371c9d4SSatish Balay high = nrow; \ 190a30f8f8cSSatish Balay while (high - low > 3) { \ 191a30f8f8cSSatish Balay t = (low + high) / 2; \ 192a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 193a30f8f8cSSatish Balay else low = t; \ 194a30f8f8cSSatish Balay } \ 195a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 196a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 197a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 198a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 199a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 200a30f8f8cSSatish Balay else *bap = value; \ 201a30f8f8cSSatish Balay goto b_noinsert; \ 202a30f8f8cSSatish Balay } \ 203a30f8f8cSSatish Balay } \ 204a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2055f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 206fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 207a30f8f8cSSatish Balay N = nrow++ - 1; \ 208a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2099566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2109566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 212a30f8f8cSSatish Balay rp[_i] = bcol; \ 213a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 214e56f5c9eSBarry Smith B->nonzerostate++; \ 215a30f8f8cSSatish Balay b_noinsert:; \ 216a30f8f8cSSatish Balay bilen[brow] = nrow; \ 217a30f8f8cSSatish Balay } 218a30f8f8cSSatish Balay 219a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 220476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 221a30f8f8cSSatish Balay */ 2229371c9d4SSatish Balay PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) { 223a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 224a30f8f8cSSatish Balay MatScalar value; 225ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2261302d50aSBarry Smith PetscInt i, j, row, col; 227d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 228d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 229d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay /* Some Variables required in the macro */ 232a30f8f8cSSatish Balay Mat A = baij->A; 233a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)(A)->data; 2341302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 235a30f8f8cSSatish Balay MatScalar *aa = a->a; 236a30f8f8cSSatish Balay 237a30f8f8cSSatish Balay Mat B = baij->B; 238a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 2391302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 240a30f8f8cSSatish Balay MatScalar *ba = b->a; 241a30f8f8cSSatish Balay 2421302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 2431302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 244a30f8f8cSSatish Balay MatScalar *ap, *bap; 245a30f8f8cSSatish Balay 246a30f8f8cSSatish Balay /* for stash */ 2470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2480298fd71SBarry Smith MatScalar *v_loc = NULL; 249a30f8f8cSSatish Balay 250a30f8f8cSSatish Balay PetscFunctionBegin; 251a30f8f8cSSatish Balay if (!baij->donotstash) { 25259ffdab8SBarry Smith if (n > baij->n_loc) { 2539566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 2549566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 2559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 2569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 25726fbe8dcSKarl Rupp 25859ffdab8SBarry Smith baij->n_loc = n; 25959ffdab8SBarry Smith } 26059ffdab8SBarry Smith in_loc = baij->in_loc; 26159ffdab8SBarry Smith v_loc = baij->v_loc; 262a30f8f8cSSatish Balay } 263a30f8f8cSSatish Balay 264a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 265a30f8f8cSSatish Balay if (im[i] < 0) continue; 2665f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 267a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 268a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 269a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 27001b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 27101b2bd88SHong Zhang if (a->ignore_ltriangular) { 27201b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 27326fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 27401b2bd88SHong Zhang } 275a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 276a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 2779371c9d4SSatish Balay brow = row / bs; 2789371c9d4SSatish Balay bcol = col / bs; 279a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 280db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 281db4deed7SKarl Rupp else value = v[i + j * m]; 282d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 2839566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 284f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 285f7d195e4SLawrence Mitchell continue; 286f7d195e4SLawrence Mitchell } else { 287f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 288f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 289a30f8f8cSSatish Balay if (mat->was_assembled) { 290*48a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 291a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2929566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] / bs + 1, &col)); 29371730473SSatish Balay col = col - 1; 294a30f8f8cSSatish Balay #else 29571730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 296a30f8f8cSSatish Balay #endif 297a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ *)(baij->A->data))->nonew) { 2989566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 299a30f8f8cSSatish Balay col = in[j]; 300a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 301a30f8f8cSSatish Balay B = baij->B; 302a30f8f8cSSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 3039371c9d4SSatish Balay bimax = b->imax; 3049371c9d4SSatish Balay bi = b->i; 3059371c9d4SSatish Balay bilen = b->ilen; 3069371c9d4SSatish Balay bj = b->j; 307a30f8f8cSSatish Balay ba = b->a; 30871730473SSatish Balay } else col += in[j] % bs; 309a30f8f8cSSatish Balay } else col = in[j]; 310db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 311db4deed7SKarl Rupp else value = v[i + j * m]; 312d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3139566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay } else { /* off processor entry */ 3175f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 318a30f8f8cSSatish Balay if (!baij->donotstash) { 3195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 320a30f8f8cSSatish Balay n_loc = 0; 321a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 322f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 323a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 324a30f8f8cSSatish Balay if (roworiented) { 325a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 326a30f8f8cSSatish Balay } else { 327a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 328a30f8f8cSSatish Balay } 329a30f8f8cSSatish Balay n_loc++; 330a30f8f8cSSatish Balay } 3319566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 332a30f8f8cSSatish Balay } 333a30f8f8cSSatish Balay } 334a30f8f8cSSatish Balay } 335a30f8f8cSSatish Balay PetscFunctionReturn(0); 336a30f8f8cSSatish Balay } 337a30f8f8cSSatish Balay 3389371c9d4SSatish Balay static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) { 33936bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 34036bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 34136bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 34236bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 34336bd2089SBarry Smith PetscBool roworiented = a->roworiented; 34436bd2089SBarry Smith const PetscScalar *value = v; 34536bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 34636bd2089SBarry Smith 34736bd2089SBarry Smith PetscFunctionBegin; 34836bd2089SBarry Smith if (col < row) { 34936bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 35036bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 35136bd2089SBarry Smith } 35236bd2089SBarry Smith rp = aj + ai[row]; 35336bd2089SBarry Smith ap = aa + bs2 * ai[row]; 35436bd2089SBarry Smith rmax = imax[row]; 35536bd2089SBarry Smith nrow = ailen[row]; 35636bd2089SBarry Smith value = v; 35736bd2089SBarry Smith low = 0; 35836bd2089SBarry Smith high = nrow; 35936bd2089SBarry Smith 36036bd2089SBarry Smith while (high - low > 7) { 36136bd2089SBarry Smith t = (low + high) / 2; 36236bd2089SBarry Smith if (rp[t] > col) high = t; 36336bd2089SBarry Smith else low = t; 36436bd2089SBarry Smith } 36536bd2089SBarry Smith for (i = low; i < high; i++) { 36636bd2089SBarry Smith if (rp[i] > col) break; 36736bd2089SBarry Smith if (rp[i] == col) { 36836bd2089SBarry Smith bap = ap + bs2 * i; 36936bd2089SBarry Smith if (roworiented) { 37036bd2089SBarry Smith if (is == ADD_VALUES) { 37136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 3729371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { bap[jj] += *value++; } 37336bd2089SBarry Smith } 37436bd2089SBarry Smith } else { 37536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 3769371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; } 37736bd2089SBarry Smith } 37836bd2089SBarry Smith } 37936bd2089SBarry Smith } else { 38036bd2089SBarry Smith if (is == ADD_VALUES) { 38136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 3829371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { *bap++ += *value++; } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 3869371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { *bap++ = *value++; } 38736bd2089SBarry Smith } 38836bd2089SBarry Smith } 38936bd2089SBarry Smith } 39036bd2089SBarry Smith goto noinsert2; 39136bd2089SBarry Smith } 39236bd2089SBarry Smith } 39336bd2089SBarry Smith if (nonew == 1) goto noinsert2; 3945f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 39536bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3969371c9d4SSatish Balay N = nrow++ - 1; 3979371c9d4SSatish Balay high++; 39836bd2089SBarry Smith /* shift up all the later entries in this row */ 3999566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4009566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 40136bd2089SBarry Smith rp[i] = col; 40236bd2089SBarry Smith bap = ap + bs2 * i; 40336bd2089SBarry Smith if (roworiented) { 40436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 4059371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; } 40636bd2089SBarry Smith } 40736bd2089SBarry Smith } else { 40836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 4099371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { *bap++ = *value++; } 41036bd2089SBarry Smith } 41136bd2089SBarry Smith } 41236bd2089SBarry Smith noinsert2:; 41336bd2089SBarry Smith ailen[row] = nrow; 41436bd2089SBarry Smith PetscFunctionReturn(0); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith 41736bd2089SBarry Smith /* 41836bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 41936bd2089SBarry Smith */ 4209371c9d4SSatish Balay static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) { 42136bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 42236bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 42336bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 42436bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 42536bd2089SBarry Smith PetscBool roworiented = a->roworiented; 42636bd2089SBarry Smith const PetscScalar *value = v; 42736bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 42836bd2089SBarry Smith 42936bd2089SBarry Smith PetscFunctionBegin; 43036bd2089SBarry Smith rp = aj + ai[row]; 43136bd2089SBarry Smith ap = aa + bs2 * ai[row]; 43236bd2089SBarry Smith rmax = imax[row]; 43336bd2089SBarry Smith nrow = ailen[row]; 43436bd2089SBarry Smith low = 0; 43536bd2089SBarry Smith high = nrow; 43636bd2089SBarry Smith value = v; 43736bd2089SBarry Smith while (high - low > 7) { 43836bd2089SBarry Smith t = (low + high) / 2; 43936bd2089SBarry Smith if (rp[t] > col) high = t; 44036bd2089SBarry Smith else low = t; 44136bd2089SBarry Smith } 44236bd2089SBarry Smith for (i = low; i < high; i++) { 44336bd2089SBarry Smith if (rp[i] > col) break; 44436bd2089SBarry Smith if (rp[i] == col) { 44536bd2089SBarry Smith bap = ap + bs2 * i; 44636bd2089SBarry Smith if (roworiented) { 44736bd2089SBarry Smith if (is == ADD_VALUES) { 44836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 4499371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { bap[jj] += *value++; } 45036bd2089SBarry Smith } 45136bd2089SBarry Smith } else { 45236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 4539371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; } 45436bd2089SBarry Smith } 45536bd2089SBarry Smith } 45636bd2089SBarry Smith } else { 45736bd2089SBarry Smith if (is == ADD_VALUES) { 45836bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 4599371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { bap[jj] += value[jj]; } 46036bd2089SBarry Smith bap += bs; 46136bd2089SBarry Smith } 46236bd2089SBarry Smith } else { 46336bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 4649371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { bap[jj] = value[jj]; } 46536bd2089SBarry Smith bap += bs; 46636bd2089SBarry Smith } 46736bd2089SBarry Smith } 46836bd2089SBarry Smith } 46936bd2089SBarry Smith goto noinsert2; 47036bd2089SBarry Smith } 47136bd2089SBarry Smith } 47236bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4735f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 47436bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4759371c9d4SSatish Balay N = nrow++ - 1; 4769371c9d4SSatish Balay high++; 47736bd2089SBarry Smith /* shift up all the later entries in this row */ 4789566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4799566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 48036bd2089SBarry Smith rp[i] = col; 48136bd2089SBarry Smith bap = ap + bs2 * i; 48236bd2089SBarry Smith if (roworiented) { 48336bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 4849371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; } 48536bd2089SBarry Smith } 48636bd2089SBarry Smith } else { 48736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 4889371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { *bap++ = *value++; } 48936bd2089SBarry Smith } 49036bd2089SBarry Smith } 49136bd2089SBarry Smith noinsert2:; 49236bd2089SBarry Smith ailen[row] = nrow; 49336bd2089SBarry Smith PetscFunctionReturn(0); 49436bd2089SBarry Smith } 49536bd2089SBarry Smith 49636bd2089SBarry Smith /* 49736bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 49836bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 49936bd2089SBarry Smith */ 5009371c9d4SSatish Balay PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) { 5010880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 502f15d580aSBarry Smith const MatScalar *value; 503f15d580aSBarry Smith MatScalar *barray = baij->barray; 504ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 505899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 506476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 507476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5080880e062SHong Zhang 509a30f8f8cSSatish Balay PetscFunctionBegin; 5100880e062SHong Zhang if (!barray) { 5119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5120880e062SHong Zhang baij->barray = barray; 5130880e062SHong Zhang } 5140880e062SHong Zhang 5150880e062SHong Zhang if (roworiented) { 5160880e062SHong Zhang stepval = (n - 1) * bs; 5170880e062SHong Zhang } else { 5180880e062SHong Zhang stepval = (m - 1) * bs; 5190880e062SHong Zhang } 5200880e062SHong Zhang for (i = 0; i < m; i++) { 5210880e062SHong Zhang if (im[i] < 0) continue; 5226bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5230880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5240880e062SHong Zhang row = im[i] - rstart; 5250880e062SHong Zhang for (j = 0; j < n; j++) { 526f3f98c53SJed Brown if (im[i] > in[j]) { 527f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 528e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 529f3f98c53SJed Brown } 5300880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5310880e062SHong Zhang if ((roworiented) && (n == 1)) { 532f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 5330880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 534f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 5350880e062SHong Zhang } else { /* Here a copy is required */ 5360880e062SHong Zhang if (roworiented) { 5370880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 5380880e062SHong Zhang } else { 5390880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 5400880e062SHong Zhang } 5410880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 5429371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { *barray++ = *value++; } 5430880e062SHong Zhang } 5440880e062SHong Zhang barray -= bs2; 5450880e062SHong Zhang } 5460880e062SHong Zhang 5470880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5480880e062SHong Zhang col = in[j] - cstart; 5499566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 550f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 551f7d195e4SLawrence Mitchell continue; 552f7d195e4SLawrence Mitchell } else { 553f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 5540880e062SHong Zhang if (mat->was_assembled) { 555*48a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 5560880e062SHong Zhang 5572515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5580880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5599371c9d4SSatish Balay { 5609371c9d4SSatish Balay PetscInt data; 5619566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &data)); 56208401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 5630880e062SHong Zhang } 5640880e062SHong Zhang #else 56508401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 5660880e062SHong Zhang #endif 5670880e062SHong Zhang #endif 5680880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5699566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &col)); 5700880e062SHong Zhang col = (col - 1) / bs; 5710880e062SHong Zhang #else 5720880e062SHong Zhang col = (baij->colmap[in[j]] - 1) / bs; 5730880e062SHong Zhang #endif 5740880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 5759566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 5760880e062SHong Zhang col = in[j]; 5770880e062SHong Zhang } 57826fbe8dcSKarl Rupp } else col = in[j]; 5799566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 5800880e062SHong Zhang } 5810880e062SHong Zhang } 5820880e062SHong Zhang } else { 5835f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 5840880e062SHong Zhang if (!baij->donotstash) { 5850880e062SHong Zhang if (roworiented) { 5869566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 5870880e062SHong Zhang } else { 5889566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 5890880e062SHong Zhang } 5900880e062SHong Zhang } 5910880e062SHong Zhang } 5920880e062SHong Zhang } 5930880e062SHong Zhang PetscFunctionReturn(0); 594a30f8f8cSSatish Balay } 595a30f8f8cSSatish Balay 5969371c9d4SSatish Balay PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) { 597f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 598d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 599d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 600a30f8f8cSSatish Balay 601a30f8f8cSSatish Balay PetscFunctionBegin; 602a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 60354c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 60454c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 605a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 606a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 607a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 60854c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 60954c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 610a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 611a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6129566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 613a30f8f8cSSatish Balay } else { 614*48a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 615a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 6169566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, idxn[j] / bs + 1, &data)); 617a30f8f8cSSatish Balay data--; 618a30f8f8cSSatish Balay #else 619a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 620a30f8f8cSSatish Balay #endif 621a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 622a30f8f8cSSatish Balay else { 623a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6249566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 625a30f8f8cSSatish Balay } 626a30f8f8cSSatish Balay } 627a30f8f8cSSatish Balay } 628f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 629a30f8f8cSSatish Balay } 630a30f8f8cSSatish Balay PetscFunctionReturn(0); 631a30f8f8cSSatish Balay } 632a30f8f8cSSatish Balay 6339371c9d4SSatish Balay PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) { 634a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 635a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 636a30f8f8cSSatish Balay 637a30f8f8cSSatish Balay PetscFunctionBegin; 638a30f8f8cSSatish Balay if (baij->size == 1) { 6399566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 640a30f8f8cSSatish Balay } else { 641a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 6439566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 6449371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 6459371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 6469566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 6479371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 6489371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 6491c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 6508f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 6519566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 6520b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6530b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 6540b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 6550b8dc8d2SHong Zhang PetscReal *rsum, *rsum2, vabs; 656899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 657d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 6580b8dc8d2SHong Zhang MatScalar *v; 6590b8dc8d2SHong Zhang 6609566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2)); 6619566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 6620b8dc8d2SHong Zhang /* Amat */ 6639371c9d4SSatish Balay v = amat->a; 6649371c9d4SSatish Balay jj = amat->j; 6650b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 6660b8dc8d2SHong Zhang grow = bs * (rstart + brow); 6670b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 6680b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 6699371c9d4SSatish Balay gcol = bs * (rstart + *jj); 6709371c9d4SSatish Balay jj++; 6710b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 6720b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 6739371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 6749371c9d4SSatish Balay v++; 6750b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 6760b8dc8d2SHong Zhang /* non-diagonal block */ 6770b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 6780b8dc8d2SHong Zhang } 6790b8dc8d2SHong Zhang } 6800b8dc8d2SHong Zhang } 6819566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 6820b8dc8d2SHong Zhang } 6830b8dc8d2SHong Zhang /* Bmat */ 6849371c9d4SSatish Balay v = bmat->a; 6859371c9d4SSatish Balay jj = bmat->j; 6860b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 6870b8dc8d2SHong Zhang grow = bs * (rstart + brow); 6880b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 6890b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 6909371c9d4SSatish Balay gcol = bs * garray[*jj]; 6919371c9d4SSatish Balay jj++; 6920b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 6930b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 6949371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 6959371c9d4SSatish Balay v++; 6960b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 6970b8dc8d2SHong Zhang rsum[grow + row] += vabs; 6980b8dc8d2SHong Zhang } 6990b8dc8d2SHong Zhang } 7000b8dc8d2SHong Zhang } 7019566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7020b8dc8d2SHong Zhang } 7031c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7040b8dc8d2SHong Zhang *norm = 0.0; 705d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 7060b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7070b8dc8d2SHong Zhang } 7089566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum, rsum2)); 709f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay PetscFunctionReturn(0); 712a30f8f8cSSatish Balay } 713a30f8f8cSSatish Balay 7149371c9d4SSatish Balay PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) { 715a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7161302d50aSBarry Smith PetscInt nstash, reallocs; 717a30f8f8cSSatish Balay 718a30f8f8cSSatish Balay PetscFunctionBegin; 71926fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 720a30f8f8cSSatish Balay 7219566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7229566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7239566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7249566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7259566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7269566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 727a30f8f8cSSatish Balay PetscFunctionReturn(0); 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 7309371c9d4SSatish Balay PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) { 731a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 732a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 73313f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 734e44c0bd4SBarry Smith PetscInt *row, *col; 735ace3abfcSBarry Smith PetscBool other_disassembled; 73613f74950SBarry Smith PetscMPIInt n; 737ace3abfcSBarry Smith PetscBool r1, r2, r3; 738a30f8f8cSSatish Balay MatScalar *val; 739a30f8f8cSSatish Balay 74091c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 741a30f8f8cSSatish Balay PetscFunctionBegin; 7424cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 743a30f8f8cSSatish Balay while (1) { 7449566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 745a30f8f8cSSatish Balay if (!flg) break; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay for (i = 0; i < n;) { 748a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 74926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 75026fbe8dcSKarl Rupp if (row[j] != rstart) break; 75126fbe8dcSKarl Rupp } 752a30f8f8cSSatish Balay if (j < n) ncols = j - i; 753a30f8f8cSSatish Balay else ncols = n - i; 754a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7559566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 756a30f8f8cSSatish Balay i = j; 757a30f8f8cSSatish Balay } 758a30f8f8cSSatish Balay } 7599566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 760a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 761a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 762a30f8f8cSSatish Balay restore the original flags */ 763a30f8f8cSSatish Balay r1 = baij->roworiented; 764a30f8f8cSSatish Balay r2 = a->roworiented; 76591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 76626fbe8dcSKarl Rupp 767a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 768a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 76926fbe8dcSKarl Rupp 77091c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 771a30f8f8cSSatish Balay while (1) { 7729566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 773a30f8f8cSSatish Balay if (!flg) break; 774a30f8f8cSSatish Balay 775a30f8f8cSSatish Balay for (i = 0; i < n;) { 776a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 77726fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 77826fbe8dcSKarl Rupp if (row[j] != rstart) break; 77926fbe8dcSKarl Rupp } 780a30f8f8cSSatish Balay if (j < n) ncols = j - i; 781a30f8f8cSSatish Balay else ncols = n - i; 7829566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 783a30f8f8cSSatish Balay i = j; 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay } 7869566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 78726fbe8dcSKarl Rupp 788a30f8f8cSSatish Balay baij->roworiented = r1; 789a30f8f8cSSatish Balay a->roworiented = r2; 79026fbe8dcSKarl Rupp 79191c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 792a30f8f8cSSatish Balay } 793a30f8f8cSSatish Balay 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 7959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 796a30f8f8cSSatish Balay 797a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 7986aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 799a30f8f8cSSatish Balay /* 800a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 801a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 802a30f8f8cSSatish Balay */ 803a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 8045f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 805*48a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay 8089371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8109566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 811a30f8f8cSSatish Balay 8129566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 81326fbe8dcSKarl Rupp 814f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8154f9cfa9eSBarry Smith 8164f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8174f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 818e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 8191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 820e56f5c9eSBarry Smith } 821a30f8f8cSSatish Balay PetscFunctionReturn(0); 822a30f8f8cSSatish Balay } 823a30f8f8cSSatish Balay 824dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8259804daf3SBarry Smith #include <petscdraw.h> 8269371c9d4SSatish Balay static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) { 827a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 828d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8297da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 830ace3abfcSBarry Smith PetscBool iascii, isdraw; 831b0a32e0cSBarry Smith PetscViewer sviewer; 832f3ef73ceSBarry Smith PetscViewerFormat format; 833a30f8f8cSSatish Balay 834a30f8f8cSSatish Balay PetscFunctionBegin; 8359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 8369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 83732077d6dSBarry Smith if (iascii) { 8389566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 839456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 840a30f8f8cSSatish Balay MatInfo info; 8419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 8429566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 8439566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 8449371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 8459371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 8469566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 8479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 8489566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 8499566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 8509566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 8529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 8539566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 854a30f8f8cSSatish Balay PetscFunctionReturn(0); 855fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 8569566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 857a30f8f8cSSatish Balay PetscFunctionReturn(0); 858c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 859c1490034SHong Zhang PetscFunctionReturn(0); 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay 863a30f8f8cSSatish Balay if (isdraw) { 864b0a32e0cSBarry Smith PetscDraw draw; 865ace3abfcSBarry Smith PetscBool isnull; 8669566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 8679566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 86845f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 869a30f8f8cSSatish Balay } 870a30f8f8cSSatish Balay 8717da1fb6eSBarry Smith { 872a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 873a30f8f8cSSatish Balay Mat A; 87465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 87565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 876d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 877a30f8f8cSSatish Balay MatScalar *a; 8783e219373SBarry Smith const char *matname; 879a30f8f8cSSatish Balay 880f204ca49SKris Buschelman /* Should this be the same type as mat? */ 8819566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 882dd400576SPatrick Sanan if (rank == 0) { 8839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 884a30f8f8cSSatish Balay } else { 8859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 886a30f8f8cSSatish Balay } 8879566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 8889566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 8899566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 8909566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)A)); 891a30f8f8cSSatish Balay 892a30f8f8cSSatish Balay /* copy over the A part */ 89365d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 8949371c9d4SSatish Balay ai = Aloc->i; 8959371c9d4SSatish Balay aj = Aloc->j; 8969371c9d4SSatish Balay a = Aloc->a; 8979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 898a30f8f8cSSatish Balay 899a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 900e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 90126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 902a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 903e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 904a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9059566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 90626fbe8dcSKarl Rupp col++; 90726fbe8dcSKarl Rupp a += bs; 908a30f8f8cSSatish Balay } 909a30f8f8cSSatish Balay } 910a30f8f8cSSatish Balay } 911a30f8f8cSSatish Balay /* copy over the B part */ 91265d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9139371c9d4SSatish Balay ai = Bloc->i; 9149371c9d4SSatish Balay aj = Bloc->j; 9159371c9d4SSatish Balay a = Bloc->a; 916a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 917e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 91826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 919a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 920a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 921a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9229566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 92326fbe8dcSKarl Rupp col++; 92426fbe8dcSKarl Rupp a += bs; 925a30f8f8cSSatish Balay } 926a30f8f8cSSatish Balay } 927a30f8f8cSSatish Balay } 9289566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 931a30f8f8cSSatish Balay /* 932a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 933b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 934a30f8f8cSSatish Balay */ 9359566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 9369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 937dd400576SPatrick Sanan if (rank == 0) { 9389566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)(A->data))->A, matname)); 9399566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)(A->data))->A, sviewer)); 940a30f8f8cSSatish Balay } 9419566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 9429566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9439566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 944a30f8f8cSSatish Balay } 945a30f8f8cSSatish Balay PetscFunctionReturn(0); 946a30f8f8cSSatish Balay } 947a30f8f8cSSatish Balay 948618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 949618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 950d1654148SHong Zhang 9519371c9d4SSatish Balay PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) { 952ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 953a30f8f8cSSatish Balay 954a30f8f8cSSatish Balay PetscFunctionBegin; 9559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 9569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 9579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 9589566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 959d1654148SHong Zhang if (iascii || isdraw || issocket) { 9609566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 9611baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 962a30f8f8cSSatish Balay PetscFunctionReturn(0); 963a30f8f8cSSatish Balay } 964a30f8f8cSSatish Balay 9659371c9d4SSatish Balay PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) { 966a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 967a30f8f8cSSatish Balay 968a30f8f8cSSatish Balay PetscFunctionBegin; 969a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 970c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N); 971a30f8f8cSSatish Balay #endif 9729566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 9739566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->bstash)); 9749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->A)); 9759566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->B)); 976a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 9779566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&baij->colmap)); 978a30f8f8cSSatish Balay #else 9799566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->colmap)); 980a30f8f8cSSatish Balay #endif 9819566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->garray)); 9829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->lvec)); 9839566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->Mvctx)); 9849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec0)); 9859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec0b)); 9869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1)); 9879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1a)); 9889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1b)); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->sMvctx)); 9909566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 9919566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->barray)); 9929566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->hd)); 9939566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->diag)); 9949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->bb1)); 9959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->xx1)); 996ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 9979566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->setvaluescopy)); 998a30f8f8cSSatish Balay #endif 9999566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 10009566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 10019566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->rangebs)); 10029566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1003901853e0SKris Buschelman 10049566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 10059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 10069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 10079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 10089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 10096214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 10109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 10116214f412SHong Zhang #endif 1012d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 10139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 1014d24d4204SJose E. Roman #endif 10159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 10169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 1017a30f8f8cSSatish Balay PetscFunctionReturn(0); 1018a30f8f8cSSatish Balay } 1019a30f8f8cSSatish Balay 10209371c9d4SSatish Balay PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) { 1021547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1022eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10236de40e93SBarry Smith PetscScalar *from; 10246de40e93SBarry Smith const PetscScalar *x; 1025547795f9SHong Zhang 1026547795f9SHong Zhang PetscFunctionBegin; 1027547795f9SHong Zhang /* diagonal part */ 10289566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 10299566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b, 0.0)); 1030547795f9SHong Zhang 1031547795f9SHong Zhang /* subdiagonal part */ 10325f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10339566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1034547795f9SHong Zhang 1035547795f9SHong Zhang /* copy x into the vec slvec0 */ 10369566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1038547795f9SHong Zhang 10399566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1042547795f9SHong Zhang 10439566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10449566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1045547795f9SHong Zhang /* supperdiagonal part */ 10469566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 1047547795f9SHong Zhang PetscFunctionReturn(0); 1048547795f9SHong Zhang } 1049547795f9SHong Zhang 10509371c9d4SSatish Balay PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) { 1051a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1052eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1053d9ca1df4SBarry Smith PetscScalar *from; 1054d9ca1df4SBarry Smith const PetscScalar *x; 1055a9d4b620SHong Zhang 1056a9d4b620SHong Zhang PetscFunctionBegin; 1057a9d4b620SHong Zhang /* diagonal part */ 10589566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 10599566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b, 0.0)); 1060a9d4b620SHong Zhang 1061a9d4b620SHong Zhang /* subdiagonal part */ 10629566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1063fc165ae2SBarry Smith 1064a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10659566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10669566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1067a9d4b620SHong Zhang 10689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10709566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1071fc165ae2SBarry Smith 10729566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10739566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1074a9d4b620SHong Zhang /* supperdiagonal part */ 10759566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 1076a9d4b620SHong Zhang PetscFunctionReturn(0); 1077a9d4b620SHong Zhang } 1078a9d4b620SHong Zhang 10799371c9d4SSatish Balay PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) { 1080eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1081eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1082eb1ec7c1SStefano Zampini PetscScalar *from, zero = 0.0; 1083eb1ec7c1SStefano Zampini const PetscScalar *x; 1084eb1ec7c1SStefano Zampini 1085eb1ec7c1SStefano Zampini PetscFunctionBegin; 1086eb1ec7c1SStefano Zampini /* diagonal part */ 10879566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 10889566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b, zero)); 1089eb1ec7c1SStefano Zampini 1090eb1ec7c1SStefano Zampini /* subdiagonal part */ 10915f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10929566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1093eb1ec7c1SStefano Zampini 1094eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 10959566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10969566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 10979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1099eb1ec7c1SStefano Zampini 11009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11019566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11029566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1103eb1ec7c1SStefano Zampini 1104eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11059566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 1106eb1ec7c1SStefano Zampini PetscFunctionReturn(0); 1107eb1ec7c1SStefano Zampini } 1108eb1ec7c1SStefano Zampini 11099371c9d4SSatish Balay PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) { 1110de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1111d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1112d9ca1df4SBarry Smith PetscScalar *from, zero = 0.0; 1113d9ca1df4SBarry Smith const PetscScalar *x; 1114a9d4b620SHong Zhang 1115a9d4b620SHong Zhang PetscFunctionBegin; 1116a9d4b620SHong Zhang /* diagonal part */ 11179566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 11189566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b, zero)); 1119a9d4b620SHong Zhang 1120a9d4b620SHong Zhang /* subdiagonal part */ 11219566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1122a9d4b620SHong Zhang 1123a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11249566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11259566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11269566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11279566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1128a9d4b620SHong Zhang 11299566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11319566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1132a9d4b620SHong Zhang 1133a9d4b620SHong Zhang /* supperdiagonal part */ 11349566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 1135a9d4b620SHong Zhang PetscFunctionReturn(0); 1136a9d4b620SHong Zhang } 1137a9d4b620SHong Zhang 1138a30f8f8cSSatish Balay /* 1139a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1140a30f8f8cSSatish Balay diagonal block 1141a30f8f8cSSatish Balay */ 11429371c9d4SSatish Balay PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) { 1143a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1144a30f8f8cSSatish Balay 1145a30f8f8cSSatish Balay PetscFunctionBegin; 114608401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11479566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 1148a30f8f8cSSatish Balay PetscFunctionReturn(0); 1149a30f8f8cSSatish Balay } 1150a30f8f8cSSatish Balay 11519371c9d4SSatish Balay PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) { 1152a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1153a30f8f8cSSatish Balay 1154a30f8f8cSSatish Balay PetscFunctionBegin; 11559566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11569566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 1157a30f8f8cSSatish Balay PetscFunctionReturn(0); 1158a30f8f8cSSatish Balay } 1159a30f8f8cSSatish Balay 11609371c9d4SSatish Balay PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) { 1161d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1162d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1163d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1164d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1165899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1166d0d4cfc2SHong Zhang 1167a30f8f8cSSatish Balay PetscFunctionBegin; 11685f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1169d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1170d0d4cfc2SHong Zhang 1171d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1172d0d4cfc2SHong Zhang /* 1173d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1174d0d4cfc2SHong Zhang */ 1175d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1176d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1177d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1178d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1179d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 118026fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1181d0d4cfc2SHong Zhang } 11829566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1183d0d4cfc2SHong Zhang } 1184d0d4cfc2SHong Zhang 11855f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1186d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1187d0d4cfc2SHong Zhang 11889371c9d4SSatish Balay pvA = &vworkA; 11899371c9d4SSatish Balay pcA = &cworkA; 11909371c9d4SSatish Balay pvB = &vworkB; 11919371c9d4SSatish Balay pcB = &cworkB; 11929371c9d4SSatish Balay if (!v) { 11939371c9d4SSatish Balay pvA = NULL; 11949371c9d4SSatish Balay pvB = NULL; 11959371c9d4SSatish Balay } 11969371c9d4SSatish Balay if (!idx) { 11979371c9d4SSatish Balay pcA = NULL; 11989371c9d4SSatish Balay if (!v) pcB = NULL; 11999371c9d4SSatish Balay } 12009566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12019566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1202d0d4cfc2SHong Zhang nztot = nzA + nzB; 1203d0d4cfc2SHong Zhang 1204d0d4cfc2SHong Zhang cmap = mat->garray; 1205d0d4cfc2SHong Zhang if (v || idx) { 1206d0d4cfc2SHong Zhang if (nztot) { 1207d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1208d0d4cfc2SHong Zhang PetscInt imark = -1; 1209d0d4cfc2SHong Zhang if (v) { 1210d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1211d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1212d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1213d0d4cfc2SHong Zhang else break; 1214d0d4cfc2SHong Zhang } 1215d0d4cfc2SHong Zhang imark = i; 1216d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1217d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1218d0d4cfc2SHong Zhang } 1219d0d4cfc2SHong Zhang if (idx) { 1220d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1221d0d4cfc2SHong Zhang if (imark > -1) { 12229371c9d4SSatish Balay for (i = 0; i < imark; i++) { idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; } 1223d0d4cfc2SHong Zhang } else { 1224d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 122526fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1226d0d4cfc2SHong Zhang else break; 1227d0d4cfc2SHong Zhang } 1228d0d4cfc2SHong Zhang imark = i; 1229d0d4cfc2SHong Zhang } 1230d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1231d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1232d0d4cfc2SHong Zhang } 1233d0d4cfc2SHong Zhang } else { 1234f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1235f4259b30SLisandro Dalcin if (v) *v = NULL; 1236d0d4cfc2SHong Zhang } 1237d0d4cfc2SHong Zhang } 1238d0d4cfc2SHong Zhang *nz = nztot; 12399566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12409566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 1241a30f8f8cSSatish Balay PetscFunctionReturn(0); 1242a30f8f8cSSatish Balay } 1243a30f8f8cSSatish Balay 12449371c9d4SSatish Balay PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) { 1245a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1246a30f8f8cSSatish Balay 1247a30f8f8cSSatish Balay PetscFunctionBegin; 12485f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1249a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1250a30f8f8cSSatish Balay PetscFunctionReturn(0); 1251a30f8f8cSSatish Balay } 1252a30f8f8cSSatish Balay 12539371c9d4SSatish Balay PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) { 1254d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1255d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1256d0d4cfc2SHong Zhang 1257d0d4cfc2SHong Zhang PetscFunctionBegin; 1258d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1259d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1260d0d4cfc2SHong Zhang } 12619371c9d4SSatish Balay PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) { 1262d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1263d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1264d0d4cfc2SHong Zhang 1265d0d4cfc2SHong Zhang PetscFunctionBegin; 1266d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1267d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1268d0d4cfc2SHong Zhang } 1269d0d4cfc2SHong Zhang 12709371c9d4SSatish Balay PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) { 12715f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 12725f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 12732726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 12742726fb6dSPierre Jolivet 12759566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 12769566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 12775f80ce2aSJacob Faibussowitsch } 12782726fb6dSPierre Jolivet PetscFunctionReturn(0); 12792726fb6dSPierre Jolivet } 12802726fb6dSPierre Jolivet 12819371c9d4SSatish Balay PetscErrorCode MatRealPart_MPISBAIJ(Mat A) { 128299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 128399cafbc1SBarry Smith 128499cafbc1SBarry Smith PetscFunctionBegin; 12859566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 12869566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 128799cafbc1SBarry Smith PetscFunctionReturn(0); 128899cafbc1SBarry Smith } 128999cafbc1SBarry Smith 12909371c9d4SSatish Balay PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) { 129199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 129299cafbc1SBarry Smith 129399cafbc1SBarry Smith PetscFunctionBegin; 12949566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 12959566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 129699cafbc1SBarry Smith PetscFunctionReturn(0); 129799cafbc1SBarry Smith } 129899cafbc1SBarry Smith 12997dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 130036032a97SHong Zhang Input: isrow - distributed(parallel), 130136032a97SHong Zhang iscol_local - locally owned (seq) 130236032a97SHong Zhang */ 13039371c9d4SSatish Balay PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) { 13048f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13058f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 130636032a97SHong Zhang 130736032a97SHong Zhang PetscFunctionBegin; 13089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13099566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 13101098a8e8SHong Zhang if (sz1 > sz2) { 13111098a8e8SHong Zhang *flg = PETSC_FALSE; 13121098a8e8SHong Zhang PetscFunctionReturn(0); 13131098a8e8SHong Zhang } 13148f46ffcaSHong Zhang 13159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13169566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13178f46ffcaSHong Zhang 13189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13209566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13229566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13239566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13248f46ffcaSHong Zhang 13258f46ffcaSHong Zhang nmatch = 0; 13268f46ffcaSHong Zhang k = 0; 13278f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13288f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13298f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13309371c9d4SSatish Balay k = j; 13319371c9d4SSatish Balay nmatch++; 13328f46ffcaSHong Zhang break; 13338f46ffcaSHong Zhang } 13348f46ffcaSHong Zhang } 13358f46ffcaSHong Zhang } 13369566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13389566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13399566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13401098a8e8SHong Zhang if (nmatch < sz1) { 13411098a8e8SHong Zhang *flg = PETSC_FALSE; 13421098a8e8SHong Zhang } else { 13431098a8e8SHong Zhang *flg = PETSC_TRUE; 13441098a8e8SHong Zhang } 134536032a97SHong Zhang PetscFunctionReturn(0); 13468f46ffcaSHong Zhang } 134736032a97SHong Zhang 13489371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) { 134936032a97SHong Zhang IS iscol_local; 135036032a97SHong Zhang PetscInt csize; 135136032a97SHong Zhang PetscBool isequal; 135236032a97SHong Zhang 135336032a97SHong Zhang PetscFunctionBegin; 13549566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 135536032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13569566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13575f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 135836032a97SHong Zhang } else { 1359068661f9SToby Isaac PetscBool issorted; 1360068661f9SToby Isaac 13619566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 13629566063dSJacob Faibussowitsch PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 13639566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 13645f80ce2aSJacob Faibussowitsch PetscCheck(isequal && issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must equal isrow and be sorted"); 13658f46ffcaSHong Zhang } 13668f46ffcaSHong Zhang 13677dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 13689566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat)); 13698f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 13709566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 13719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 13728f46ffcaSHong Zhang } 13738f46ffcaSHong Zhang PetscFunctionReturn(0); 13748f46ffcaSHong Zhang } 13758f46ffcaSHong Zhang 13769371c9d4SSatish Balay PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) { 1377a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1378a30f8f8cSSatish Balay 1379a30f8f8cSSatish Balay PetscFunctionBegin; 13809566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 13819566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 1382a30f8f8cSSatish Balay PetscFunctionReturn(0); 1383a30f8f8cSSatish Balay } 1384a30f8f8cSSatish Balay 13859371c9d4SSatish Balay PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) { 1386a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1387a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 13883966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1389a30f8f8cSSatish Balay 1390a30f8f8cSSatish Balay PetscFunctionBegin; 1391d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 139226fbe8dcSKarl Rupp 13939566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 139426fbe8dcSKarl Rupp 13959371c9d4SSatish Balay isend[0] = info->nz_used; 13969371c9d4SSatish Balay isend[1] = info->nz_allocated; 13979371c9d4SSatish Balay isend[2] = info->nz_unneeded; 13989371c9d4SSatish Balay isend[3] = info->memory; 13999371c9d4SSatish Balay isend[4] = info->mallocs; 140026fbe8dcSKarl Rupp 14019566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 140226fbe8dcSKarl Rupp 14039371c9d4SSatish Balay isend[0] += info->nz_used; 14049371c9d4SSatish Balay isend[1] += info->nz_allocated; 14059371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14069371c9d4SSatish Balay isend[3] += info->memory; 14079371c9d4SSatish Balay isend[4] += info->mallocs; 1408a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1409a30f8f8cSSatish Balay info->nz_used = isend[0]; 1410a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1411a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1412a30f8f8cSSatish Balay info->memory = isend[3]; 1413a30f8f8cSSatish Balay info->mallocs = isend[4]; 1414a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14151c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 141626fbe8dcSKarl Rupp 1417a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1418a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1419a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1420a30f8f8cSSatish Balay info->memory = irecv[3]; 1421a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1422a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 142426fbe8dcSKarl Rupp 1425a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1426a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1427a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1428a30f8f8cSSatish Balay info->memory = irecv[3]; 1429a30f8f8cSSatish Balay info->mallocs = irecv[4]; 143098921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1431a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1432a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1433a30f8f8cSSatish Balay info->factor_mallocs = 0; 1434a30f8f8cSSatish Balay PetscFunctionReturn(0); 1435a30f8f8cSSatish Balay } 1436a30f8f8cSSatish Balay 14379371c9d4SSatish Balay PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) { 1438a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1439d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1440a30f8f8cSSatish Balay 1441a30f8f8cSSatish Balay PetscFunctionBegin; 1442e98b92d7SKris Buschelman switch (op) { 1443512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1444e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 144528b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1446a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1447c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1448e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 144943674050SBarry Smith MatCheckPreallocated(A, 1); 14509566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14519566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1452e98b92d7SKris Buschelman break; 1453e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 145443674050SBarry Smith MatCheckPreallocated(A, 1); 14554e0d8c25SBarry Smith a->roworiented = flg; 145626fbe8dcSKarl Rupp 14579566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14589566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1459e98b92d7SKris Buschelman break; 14608c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 14619371c9d4SSatish Balay case MAT_SORTED_FULL: PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); break; 14629371c9d4SSatish Balay case MAT_IGNORE_OFF_PROC_ENTRIES: a->donotstash = flg; break; 14639371c9d4SSatish Balay case MAT_USE_HASH_TABLE: a->ht_flag = flg; break; 14649371c9d4SSatish Balay case MAT_HERMITIAN: MatCheckPreallocated(A, 1); PetscCall(MatSetOption(a->A, op, flg)); 14650f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1466eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1467547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1468eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1469eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1470eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1471b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1472eb1ec7c1SStefano Zampini } 14730f2140c7SStefano Zampini #endif 1474eeffb40dSHong Zhang break; 1475ffa07934SHong Zhang case MAT_SPD: 14769371c9d4SSatish Balay case MAT_SYMMETRIC: MatCheckPreallocated(A, 1); PetscCall(MatSetOption(a->A, op, flg)); 1477eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1478eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1479eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1480eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1481eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1482eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1483eb1ec7c1SStefano Zampini } 1484eb1ec7c1SStefano Zampini #endif 1485eeffb40dSHong Zhang break; 148677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 148743674050SBarry Smith MatCheckPreallocated(A, 1); 14889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1489eeffb40dSHong Zhang break; 14909a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1491b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 14925f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric"); 14939566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 149477e54ba9SKris Buschelman break; 14959371c9d4SSatish Balay case MAT_SPD_ETERNAL: break; 14969371c9d4SSatish Balay case MAT_IGNORE_LOWER_TRIANGULAR: aA->ignore_ltriangular = flg; break; 14979371c9d4SSatish Balay case MAT_ERROR_LOWER_TRIANGULAR: aA->ignore_ltriangular = flg; break; 14989371c9d4SSatish Balay case MAT_GETROW_UPPERTRIANGULAR: aA->getrow_utriangular = flg; break; 14999371c9d4SSatish Balay default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 1500a30f8f8cSSatish Balay } 1501a30f8f8cSSatish Balay PetscFunctionReturn(0); 1502a30f8f8cSSatish Balay } 1503a30f8f8cSSatish Balay 15049371c9d4SSatish Balay PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) { 1505a30f8f8cSSatish Balay PetscFunctionBegin; 15067fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1507cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15089566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1509cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15109566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1511fc4dec0aSBarry Smith } 15128115998fSBarry Smith PetscFunctionReturn(0); 1513a30f8f8cSSatish Balay } 1514a30f8f8cSSatish Balay 15159371c9d4SSatish Balay PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) { 1516a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1517a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 15185e90f9d9SHong Zhang PetscInt nv, m, n; 1519ace3abfcSBarry Smith PetscBool flg; 1520a30f8f8cSSatish Balay 1521a30f8f8cSSatish Balay PetscFunctionBegin; 1522a30f8f8cSSatish Balay if (ll != rr) { 15239566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 15245f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1525a30f8f8cSSatish Balay } 1526b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1527b3bf805bSHong Zhang 15289566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 15295f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1530b3bf805bSHong Zhang 15319566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 15325f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 15335e90f9d9SHong Zhang 15349566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 15355e90f9d9SHong Zhang 15365e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1537dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15385e90f9d9SHong Zhang 15395e90f9d9SHong Zhang /* scale the diagonal part */ 1540dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1541a30f8f8cSSatish Balay 15425e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 15439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1544dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 1545a30f8f8cSSatish Balay PetscFunctionReturn(0); 1546a30f8f8cSSatish Balay } 1547a30f8f8cSSatish Balay 15489371c9d4SSatish Balay PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) { 1549f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1550a30f8f8cSSatish Balay 1551a30f8f8cSSatish Balay PetscFunctionBegin; 15529566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 1553a30f8f8cSSatish Balay PetscFunctionReturn(0); 1554a30f8f8cSSatish Balay } 1555a30f8f8cSSatish Balay 15566849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1557a30f8f8cSSatish Balay 15589371c9d4SSatish Balay PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) { 1559a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1560a30f8f8cSSatish Balay Mat a, b, c, d; 1561ace3abfcSBarry Smith PetscBool flg; 1562a30f8f8cSSatish Balay 1563a30f8f8cSSatish Balay PetscFunctionBegin; 15649371c9d4SSatish Balay a = matA->A; 15659371c9d4SSatish Balay b = matA->B; 15669371c9d4SSatish Balay c = matB->A; 15679371c9d4SSatish Balay d = matB->B; 1568a30f8f8cSSatish Balay 15699566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 1570*48a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 15711c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1572a30f8f8cSSatish Balay PetscFunctionReturn(0); 1573a30f8f8cSSatish Balay } 1574a30f8f8cSSatish Balay 15759371c9d4SSatish Balay PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) { 15764c7a3774SStefano Zampini PetscBool isbaij; 15773c896bc6SHong Zhang 15783c896bc6SHong Zhang PetscFunctionBegin; 15799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 15805f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 15813c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 15823c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 15839566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 15849566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 15859566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 15863c896bc6SHong Zhang } else { 15874c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 15884c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 15894c7a3774SStefano Zampini 15909566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 15919566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 15923c896bc6SHong Zhang } 15939566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 15943c896bc6SHong Zhang PetscFunctionReturn(0); 15953c896bc6SHong Zhang } 15963c896bc6SHong Zhang 15979371c9d4SSatish Balay PetscErrorCode MatSetUp_MPISBAIJ(Mat A) { 1598273d9f13SBarry Smith PetscFunctionBegin; 15999566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, A->rmap->bs, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL)); 1600273d9f13SBarry Smith PetscFunctionReturn(0); 1601273d9f13SBarry Smith } 1602a5e6ed63SBarry Smith 16039371c9d4SSatish Balay PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) { 16044fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16054fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16064fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16074fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16084fe895cdSHong Zhang 16094fe895cdSHong Zhang PetscFunctionBegin; 16104fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16114fe895cdSHong Zhang PetscScalar alpha = a; 16124fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16134fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 16149566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1615792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 16164fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 16174fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 16189566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1619792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 16209566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1621ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 16229566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 16239566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 16249566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 16254fe895cdSHong Zhang } else { 16264de5dceeSHong Zhang Mat B; 16274de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 16285f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 16299566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 16309566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 16319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 16329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 16339566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 16359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 16369566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 16379566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 16389566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 16399566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 16409566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 16419566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 16429566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 16439566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 16449566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 16459566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 16469566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 16474fe895cdSHong Zhang } 16484fe895cdSHong Zhang PetscFunctionReturn(0); 16494fe895cdSHong Zhang } 16504fe895cdSHong Zhang 16519371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) { 16521302d50aSBarry Smith PetscInt i; 1653afebec48SHong Zhang PetscBool flg; 1654a5e6ed63SBarry Smith 16556849ba73SBarry Smith PetscFunctionBegin; 16569566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1657a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 16589566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 1659*48a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 16604dcd73b1SHong Zhang } 1661a5e6ed63SBarry Smith PetscFunctionReturn(0); 1662a5e6ed63SBarry Smith } 1663a5e6ed63SBarry Smith 16649371c9d4SSatish Balay PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) { 16657d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 16666f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 16677d68702bSBarry Smith 16687d68702bSBarry Smith PetscFunctionBegin; 16696f33a894SBarry Smith if (!Y->preallocated) { 16709566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 16716f33a894SBarry Smith } else if (!aij->nz) { 1672b83222d8SBarry Smith PetscInt nonew = aij->nonew; 16739566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1674b83222d8SBarry Smith aij->nonew = nonew; 16757d68702bSBarry Smith } 16769566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 16777d68702bSBarry Smith PetscFunctionReturn(0); 16787d68702bSBarry Smith } 16797d68702bSBarry Smith 16809371c9d4SSatish Balay PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) { 16813b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16823b49f96aSBarry Smith 16833b49f96aSBarry Smith PetscFunctionBegin; 16845f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 16859566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 16863b49f96aSBarry Smith if (d) { 16873b49f96aSBarry Smith PetscInt rstart; 16889566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 16893b49f96aSBarry Smith *d += rstart / A->rmap->bs; 16903b49f96aSBarry Smith } 16913b49f96aSBarry Smith PetscFunctionReturn(0); 16923b49f96aSBarry Smith } 16933b49f96aSBarry Smith 16949371c9d4SSatish Balay PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) { 1695a5b7ff6bSBarry Smith PetscFunctionBegin; 1696a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 1697a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1698a5b7ff6bSBarry Smith } 16993b49f96aSBarry Smith 1700a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17013964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1702a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1703a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1704a9d4b620SHong Zhang MatMult_MPISBAIJ, 170597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1706431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1707431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1708f4259b30SLisandro Dalcin NULL, 1709f4259b30SLisandro Dalcin NULL, 1710f4259b30SLisandro Dalcin NULL, 1711f4259b30SLisandro Dalcin /* 10*/ NULL, 1712f4259b30SLisandro Dalcin NULL, 1713f4259b30SLisandro Dalcin NULL, 171441f059aeSBarry Smith MatSOR_MPISBAIJ, 1715a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 171697304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1717a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1718a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1719a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1720a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 172197304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1722a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1723a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1724a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1725f4259b30SLisandro Dalcin /* 24*/ NULL, 1726f4259b30SLisandro Dalcin NULL, 1727f4259b30SLisandro Dalcin NULL, 1728f4259b30SLisandro Dalcin NULL, 1729f4259b30SLisandro Dalcin NULL, 17304994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1731f4259b30SLisandro Dalcin NULL, 1732f4259b30SLisandro Dalcin NULL, 1733a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1734f4259b30SLisandro Dalcin NULL, 1735d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1736f4259b30SLisandro Dalcin NULL, 1737f4259b30SLisandro Dalcin NULL, 1738f4259b30SLisandro Dalcin NULL, 1739f4259b30SLisandro Dalcin NULL, 1740d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 17417dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1742d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1743a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 17443c896bc6SHong Zhang MatCopy_MPISBAIJ, 1745f4259b30SLisandro Dalcin /* 44*/ NULL, 1746a30f8f8cSSatish Balay MatScale_MPISBAIJ, 17477d68702bSBarry Smith MatShift_MPISBAIJ, 1748f4259b30SLisandro Dalcin NULL, 1749f4259b30SLisandro Dalcin NULL, 1750f4259b30SLisandro Dalcin /* 49*/ NULL, 1751f4259b30SLisandro Dalcin NULL, 1752f4259b30SLisandro Dalcin NULL, 1753f4259b30SLisandro Dalcin NULL, 1754f4259b30SLisandro Dalcin NULL, 1755f4259b30SLisandro Dalcin /* 54*/ NULL, 1756f4259b30SLisandro Dalcin NULL, 1757a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1758f4259b30SLisandro Dalcin NULL, 1759a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 17607dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1761f4259b30SLisandro Dalcin NULL, 1762f4259b30SLisandro Dalcin NULL, 1763f4259b30SLisandro Dalcin NULL, 1764f4259b30SLisandro Dalcin NULL, 1765f4259b30SLisandro Dalcin /* 64*/ NULL, 1766f4259b30SLisandro Dalcin NULL, 1767f4259b30SLisandro Dalcin NULL, 1768f4259b30SLisandro Dalcin NULL, 1769f4259b30SLisandro Dalcin NULL, 1770d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1771f4259b30SLisandro Dalcin NULL, 177228d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1773f4259b30SLisandro Dalcin NULL, 1774f4259b30SLisandro Dalcin NULL, 1775f4259b30SLisandro Dalcin /* 74*/ NULL, 1776f4259b30SLisandro Dalcin NULL, 1777f4259b30SLisandro Dalcin NULL, 1778f4259b30SLisandro Dalcin NULL, 1779f4259b30SLisandro Dalcin NULL, 1780f4259b30SLisandro Dalcin /* 79*/ NULL, 1781f4259b30SLisandro Dalcin NULL, 1782f4259b30SLisandro Dalcin NULL, 1783f4259b30SLisandro Dalcin NULL, 17845bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1785f4259b30SLisandro Dalcin /* 84*/ NULL, 1786f4259b30SLisandro Dalcin NULL, 1787f4259b30SLisandro Dalcin NULL, 1788f4259b30SLisandro Dalcin NULL, 1789f4259b30SLisandro Dalcin NULL, 1790f4259b30SLisandro Dalcin /* 89*/ NULL, 1791f4259b30SLisandro Dalcin NULL, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin NULL, 1794f4259b30SLisandro Dalcin NULL, 1795f4259b30SLisandro Dalcin /* 94*/ NULL, 1796f4259b30SLisandro Dalcin NULL, 1797f4259b30SLisandro Dalcin NULL, 1798f4259b30SLisandro Dalcin NULL, 1799f4259b30SLisandro Dalcin NULL, 1800f4259b30SLisandro Dalcin /* 99*/ NULL, 1801f4259b30SLisandro Dalcin NULL, 1802f4259b30SLisandro Dalcin NULL, 18032726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1804f4259b30SLisandro Dalcin NULL, 1805f4259b30SLisandro Dalcin /*104*/ NULL, 180699cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1807d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1808d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 180995936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1810f4259b30SLisandro Dalcin /*109*/ NULL, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 18143b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1815f4259b30SLisandro Dalcin /*114*/ NULL, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin NULL, 1820f4259b30SLisandro Dalcin /*119*/ NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 1823f4259b30SLisandro Dalcin NULL, 1824f4259b30SLisandro Dalcin NULL, 1825f4259b30SLisandro Dalcin /*124*/ NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin NULL, 1830f4259b30SLisandro Dalcin /*129*/ NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin NULL, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin /*134*/ NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin NULL, 184046533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin NULL, 1844f4259b30SLisandro Dalcin NULL, 1845d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1846d70f29a3SPierre Jolivet NULL, 1847d70f29a3SPierre Jolivet NULL, 184899a7f59eSMark Adams NULL, 184999a7f59eSMark Adams NULL, 18507fb60732SBarry Smith NULL, 18519371c9d4SSatish Balay /*150*/ NULL}; 1852a30f8f8cSSatish Balay 18539371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) { 1854476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1855535b19f3SBarry Smith PetscInt i, mbs, Mbs; 18565d2a9ed1SStefano Zampini PetscMPIInt size; 1857a23d5eceSKris Buschelman 1858a23d5eceSKris Buschelman PetscFunctionBegin; 18599566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 18609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 18619566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 18629566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 18635f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 18645f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1865899cda47SBarry Smith 1866d0f46423SBarry Smith mbs = B->rmap->n / bs; 1867d0f46423SBarry Smith Mbs = B->rmap->N / bs; 18685f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1869a23d5eceSKris Buschelman 1870d0f46423SBarry Smith B->rmap->bs = bs; 1871a23d5eceSKris Buschelman b->bs2 = bs * bs; 1872a23d5eceSKris Buschelman b->mbs = mbs; 1873a23d5eceSKris Buschelman b->Mbs = Mbs; 1874de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1875de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1876a23d5eceSKris Buschelman 18779371c9d4SSatish Balay for (i = 0; i <= b->size; i++) { b->rangebs[i] = B->rmap->range[i] / bs; } 1878d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1879d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1880a23d5eceSKris Buschelman 1881d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1882d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1883a23d5eceSKris Buschelman 1884cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 18859566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&b->colmap)); 1886cb7b82ddSBarry Smith #else 18879566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1888cb7b82ddSBarry Smith #endif 18899566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 18909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 18919566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 18929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 18939566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 18949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 18959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 18969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 18979566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 1898cb7b82ddSBarry Smith 1899cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 19009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 19019566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 19029566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 19039566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 19049566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 19059566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B, (PetscObject)b->B)); 1906cb7b82ddSBarry Smith 1907526dfc15SBarry Smith if (!B->preallocated) { 19089566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 19099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 19109566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 19119566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B, (PetscObject)b->A)); 19129566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 1913526dfc15SBarry Smith } 1914a23d5eceSKris Buschelman 19159566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 19169566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 191726fbe8dcSKarl Rupp 1918526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1919cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 1920cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 1921a23d5eceSKris Buschelman PetscFunctionReturn(0); 1922a23d5eceSKris Buschelman } 1923a23d5eceSKris Buschelman 19249371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) { 192502106b30SBarry Smith PetscInt m, rstart, cend; 1926f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 1927f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 1928f4259b30SLisandro Dalcin PetscScalar *values = NULL; 1929bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 19303bd0feecSPierre Jolivet PetscBool nooffprocentries; 1931dfb205c3SBarry Smith 1932dfb205c3SBarry Smith PetscFunctionBegin; 19335f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 19349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 19359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 19369566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19379566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19389566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 1939dfb205c3SBarry Smith m = B->rmap->n / bs; 1940dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 1941dfb205c3SBarry Smith cend = B->cmap->rend / bs; 1942dfb205c3SBarry Smith 19435f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 19449566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 1945dfb205c3SBarry Smith for (i = 0; i < m; i++) { 1946dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 19475f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 19480cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 1949dfb205c3SBarry Smith JJ = jj + ii[i]; 19500cd7f59aSBarry Smith bd = 0; 1951dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 19520cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 1953dfb205c3SBarry Smith JJ++; 19540cd7f59aSBarry Smith bd++; 1955dfb205c3SBarry Smith } 1956dfb205c3SBarry Smith d = 0; 1957dfb205c3SBarry Smith for (; j < nz; j++) { 1958dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1959dfb205c3SBarry Smith d++; 1960dfb205c3SBarry Smith } 1961dfb205c3SBarry Smith d_nnz[i] = d; 19620cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 19630cd7f59aSBarry Smith nz = nz - bd; 19640cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 1965dfb205c3SBarry Smith } 19669566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 19679566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 19689566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 1969dfb205c3SBarry Smith 1970dfb205c3SBarry Smith values = (PetscScalar *)V; 1971*48a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 1972dfb205c3SBarry Smith for (i = 0; i < m; i++) { 1973dfb205c3SBarry Smith PetscInt row = i + rstart; 1974dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 1975dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1976bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 1977dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 19789566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 1979bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 1980bb80cfbbSStefano Zampini PetscInt j; 19810cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 19820cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 19839566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 19840cd7f59aSBarry Smith } 19850cd7f59aSBarry Smith } 1986dfb205c3SBarry Smith } 1987dfb205c3SBarry Smith 19889566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 19893bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 19903bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 19919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 19933bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 19943bd0feecSPierre Jolivet 19959566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 1996dfb205c3SBarry Smith PetscFunctionReturn(0); 1997dfb205c3SBarry Smith } 1998dfb205c3SBarry Smith 19990bad9183SKris Buschelman /*MC 2000fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2001828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2002828413b8SBarry Smith the matrix is stored. 2003828413b8SBarry Smith 2004828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2005828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20060bad9183SKris Buschelman 20070bad9183SKris Buschelman Options Database Keys: 20080bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 20090bad9183SKris Buschelman 2010476417e5SBarry Smith Notes: 2011476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2012476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2013476417e5SBarry Smith 20140bad9183SKris Buschelman Level: beginner 20150bad9183SKris Buschelman 2016db781477SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 20170bad9183SKris Buschelman M*/ 20180bad9183SKris Buschelman 20199371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) { 2020b5df2d14SHong Zhang Mat_MPISBAIJ *b; 202194ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2022b5df2d14SHong Zhang 2023b5df2d14SHong Zhang PetscFunctionBegin; 20249566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B, &b)); 2025b0a32e0cSBarry Smith B->data = (void *)b; 20269566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps))); 2027b5df2d14SHong Zhang 2028b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2029b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2030b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2031b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 203226fbe8dcSKarl Rupp 20339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 20349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2035b5df2d14SHong Zhang 2036b5df2d14SHong Zhang /* build local table of row and column ownerships */ 20379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2038b5df2d14SHong Zhang 2039b5df2d14SHong Zhang /* build cache for off array entries formed */ 20409566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 204126fbe8dcSKarl Rupp 2042b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 20430298fd71SBarry Smith b->colmap = NULL; 20440298fd71SBarry Smith b->garray = NULL; 2045b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2046b5df2d14SHong Zhang 2047b5df2d14SHong Zhang /* stuff used in block assembly */ 2048f4259b30SLisandro Dalcin b->barray = NULL; 2049b5df2d14SHong Zhang 2050b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2051f4259b30SLisandro Dalcin b->lvec = NULL; 2052f4259b30SLisandro Dalcin b->Mvctx = NULL; 2053f4259b30SLisandro Dalcin b->slvec0 = NULL; 2054f4259b30SLisandro Dalcin b->slvec0b = NULL; 2055f4259b30SLisandro Dalcin b->slvec1 = NULL; 2056f4259b30SLisandro Dalcin b->slvec1a = NULL; 2057f4259b30SLisandro Dalcin b->slvec1b = NULL; 2058f4259b30SLisandro Dalcin b->sMvctx = NULL; 2059b5df2d14SHong Zhang 2060b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2061f4259b30SLisandro Dalcin b->rowindices = NULL; 2062f4259b30SLisandro Dalcin b->rowvalues = NULL; 2063b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2064b5df2d14SHong Zhang 2065b5df2d14SHong Zhang /* hash table stuff */ 2066f4259b30SLisandro Dalcin b->ht = NULL; 2067f4259b30SLisandro Dalcin b->hd = NULL; 2068b5df2d14SHong Zhang b->ht_size = 0; 2069b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2070b5df2d14SHong Zhang b->ht_fact = 0; 2071b5df2d14SHong Zhang b->ht_total_ct = 0; 2072b5df2d14SHong Zhang b->ht_insert_ct = 0; 2073b5df2d14SHong Zhang 20747dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 20757a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 20767a868f3eSHong Zhang 2077f4259b30SLisandro Dalcin b->in_loc = NULL; 2078f4259b30SLisandro Dalcin b->v_loc = NULL; 207959ffdab8SBarry Smith b->n_loc = 0; 208094ae4db5SBarry Smith 20819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 20829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 20839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 20849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 20856214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 20869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 20876214f412SHong Zhang #endif 2088d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 20899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2090d24d4204SJose E. Roman #endif 20919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 20929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2093aa5a9175SDahai Guo 2094b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2095b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2096b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2097b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2098eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2099b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2100eb1ec7c1SStefano Zampini #else 2101b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2102eb1ec7c1SStefano Zampini #endif 210313647f61SHong Zhang 21049566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2105d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 21069566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 210794ae4db5SBarry Smith if (flg) { 210894ae4db5SBarry Smith PetscReal fact = 1.39; 21099566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 21109566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 211194ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 21129566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 21139566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 211494ae4db5SBarry Smith } 2115d0609cedSBarry Smith PetscOptionsEnd(); 2116b5df2d14SHong Zhang PetscFunctionReturn(0); 2117b5df2d14SHong Zhang } 2118b5df2d14SHong Zhang 2119209238afSKris Buschelman /*MC 2120002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2121209238afSKris Buschelman 2122209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2123209238afSKris Buschelman and MATMPISBAIJ otherwise. 2124209238afSKris Buschelman 2125209238afSKris Buschelman Options Database Keys: 2126209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2127209238afSKris Buschelman 2128209238afSKris Buschelman Level: beginner 2129209238afSKris Buschelman 2130db781477SPatrick Sanan .seealso: `MatCreateSBAIJ`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2131209238afSKris Buschelman M*/ 2132209238afSKris Buschelman 2133b5df2d14SHong Zhang /*@C 2134b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2135b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2136b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2137b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2138b5df2d14SHong Zhang 2139b5df2d14SHong Zhang Collective on Mat 2140b5df2d14SHong Zhang 2141b5df2d14SHong Zhang Input Parameters: 21421c4f3114SJed Brown + B - the matrix 2143bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2144bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2145b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2146b5df2d14SHong Zhang submatrix (same for all local rows) 2147b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 21486d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 21490298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 215095742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2151b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2152b5df2d14SHong Zhang submatrix (same for all local rows). 2153b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2154c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 21550298fd71SBarry Smith (possibly different for each block row) or NULL. 2156b5df2d14SHong Zhang 2157b5df2d14SHong Zhang Options Database Keys: 2158a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2159b5df2d14SHong Zhang block calculations (much slower) 2160a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2161b5df2d14SHong Zhang 2162b5df2d14SHong Zhang Notes: 2163b5df2d14SHong Zhang 2164b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2165b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2166b5df2d14SHong Zhang 216749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 216849a6f317SBarry Smith 2169b5df2d14SHong Zhang Storage Information: 2170b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2171b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2172b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2173b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2174b5df2d14SHong Zhang 2175b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2176b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 21770298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2178b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2179b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2180b5df2d14SHong Zhang 2181aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2182aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2183aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2184aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2185aa95bbe8SBarry Smith 2186b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2187b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2188b5df2d14SHong Zhang 2189b5df2d14SHong Zhang .vb 2190b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2191a4b1a0f6SJed Brown -------------------------- 2192c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2193c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2194c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2195a4b1a0f6SJed Brown -------------------------- 2196b5df2d14SHong Zhang .ve 2197b5df2d14SHong Zhang 2198b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2199b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22006d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22016d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2202b5df2d14SHong Zhang 22036d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22046d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2205c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2206c2fc9fa9SBarry Smith 2207b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2208b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2209b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2210b5df2d14SHong Zhang matrices. 2211b5df2d14SHong Zhang 2212b5df2d14SHong Zhang Level: intermediate 2213b5df2d14SHong Zhang 2214db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2215b5df2d14SHong Zhang @*/ 22169371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) { 2217b5df2d14SHong Zhang PetscFunctionBegin; 22186ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 22196ba663aaSJed Brown PetscValidType(B, 1); 22206ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2221cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 2222b5df2d14SHong Zhang PetscFunctionReturn(0); 2223b5df2d14SHong Zhang } 2224b5df2d14SHong Zhang 2225a30f8f8cSSatish Balay /*@C 222669b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2227a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2228a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2229a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2230a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2231a30f8f8cSSatish Balay 2232d083f849SBarry Smith Collective 2233a30f8f8cSSatish Balay 2234a30f8f8cSSatish Balay Input Parameters: 2235a30f8f8cSSatish Balay + comm - MPI communicator 2236bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2237bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2238a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2239a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2240a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2241a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2242a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2243a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2244a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2245a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2246a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2247a30f8f8cSSatish Balay submatrix (same for all local rows) 2248a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 22496d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 22500298fd71SBarry Smith (possibly different for each block block row) or NULL. 225195742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 225295742e49SBarry Smith set its value even if it is zero. 2253a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2254a30f8f8cSSatish Balay submatrix (same for all local rows). 2255a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2256a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 22570298fd71SBarry Smith each block row) or NULL. 2258a30f8f8cSSatish Balay 2259a30f8f8cSSatish Balay Output Parameter: 2260a30f8f8cSSatish Balay . A - the matrix 2261a30f8f8cSSatish Balay 2262a30f8f8cSSatish Balay Options Database Keys: 2263a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2264a30f8f8cSSatish Balay block calculations (much slower) 2265a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2266a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2267a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2268a30f8f8cSSatish Balay 2269175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2270f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2271175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2272175b88e8SBarry Smith 2273a30f8f8cSSatish Balay Notes: 2274d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 22756d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2276d1be2dadSMatthew Knepley 2277a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2278a30f8f8cSSatish Balay (possibly both). 2279a30f8f8cSSatish Balay 2280a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2281a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2282a30f8f8cSSatish Balay 228349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 228449a6f317SBarry Smith 2285a30f8f8cSSatish Balay Storage Information: 2286a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2287a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2288a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2289a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2290a30f8f8cSSatish Balay 2291a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2292a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 22930298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2294a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2295a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2296a30f8f8cSSatish Balay 2297a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2298a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2299a30f8f8cSSatish Balay 2300a30f8f8cSSatish Balay .vb 2301a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2302a4b1a0f6SJed Brown -------------------------- 2303c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2304c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2305c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2306a4b1a0f6SJed Brown -------------------------- 2307a30f8f8cSSatish Balay .ve 2308a30f8f8cSSatish Balay 2309a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2310a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23116d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23126d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2313a30f8f8cSSatish Balay 23146d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23156d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2316a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2317a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2318a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2319a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2320a30f8f8cSSatish Balay matrices. 2321a30f8f8cSSatish Balay 2322a30f8f8cSSatish Balay Level: intermediate 2323a30f8f8cSSatish Balay 2324db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()` 2325a30f8f8cSSatish Balay @*/ 2326a30f8f8cSSatish Balay 23279371c9d4SSatish Balay PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) { 23281302d50aSBarry Smith PetscMPIInt size; 2329a30f8f8cSSatish Balay 2330a30f8f8cSSatish Balay PetscFunctionBegin; 23319566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 23329566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 23339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2334273d9f13SBarry Smith if (size > 1) { 23359566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 23369566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2337273d9f13SBarry Smith } else { 23389566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 23399566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2340273d9f13SBarry Smith } 2341a30f8f8cSSatish Balay PetscFunctionReturn(0); 2342a30f8f8cSSatish Balay } 2343a30f8f8cSSatish Balay 23449371c9d4SSatish Balay static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) { 2345a30f8f8cSSatish Balay Mat mat; 2346a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2347d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2348387bc808SHong Zhang PetscScalar *array; 2349a30f8f8cSSatish Balay 2350a30f8f8cSSatish Balay PetscFunctionBegin; 2351f4259b30SLisandro Dalcin *newmat = NULL; 235226fbe8dcSKarl Rupp 23539566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 23549566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 23559566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 23569566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 23579566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2358e1b6402fSHong Zhang 2359d5f3da31SBarry Smith mat->factortype = matin->factortype; 2360273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 236182327fa8SHong Zhang mat->assembled = PETSC_TRUE; 23627fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 23637fff6886SHong Zhang 2364b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2365a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2366a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2367a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2368a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2369a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2370a30f8f8cSSatish Balay 2371a30f8f8cSSatish Balay a->size = oldmat->size; 2372a30f8f8cSSatish Balay a->rank = oldmat->rank; 2373a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2374a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2375f4259b30SLisandro Dalcin a->rowindices = NULL; 2376f4259b30SLisandro Dalcin a->rowvalues = NULL; 2377a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2378f4259b30SLisandro Dalcin a->barray = NULL; 2379899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2380899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2381899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2382899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2383a30f8f8cSSatish Balay 2384a30f8f8cSSatish Balay /* hash table stuff */ 2385f4259b30SLisandro Dalcin a->ht = NULL; 2386f4259b30SLisandro Dalcin a->hd = NULL; 2387a30f8f8cSSatish Balay a->ht_size = 0; 2388a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2389a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2390a30f8f8cSSatish Balay a->ht_total_ct = 0; 2391a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2392a30f8f8cSSatish Balay 23939566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2394a30f8f8cSSatish Balay if (oldmat->colmap) { 2395a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 23969566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap, &a->colmap)); 2397a30f8f8cSSatish Balay #else 23989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 23999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat, (a->Nbs) * sizeof(PetscInt))); 24009566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2401a30f8f8cSSatish Balay #endif 2402f4259b30SLisandro Dalcin } else a->colmap = NULL; 2403387bc808SHong Zhang 2404a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 24059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 24069566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat, len * sizeof(PetscInt))); 24079566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2408f4259b30SLisandro Dalcin } else a->garray = NULL; 2409a30f8f8cSSatish Balay 24109566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 24119566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 24129566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->lvec)); 24139566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 24149566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->Mvctx)); 241582327fa8SHong Zhang 24169566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 24179566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec0)); 24189566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 24199566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec1)); 2420387bc808SHong Zhang 24219566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 24229566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 24239566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 24249566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 24259566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 24269566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 24279566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 24289566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 24299566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec0)); 24309566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec1)); 24319566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec0b)); 24329566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec1a)); 24339566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->slvec1b)); 2434387bc808SHong Zhang 2435387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 24369566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2437387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 24389566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->sMvctx)); 243982327fa8SHong Zhang 24409566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 24419566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->A)); 24429566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 24439566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->B)); 24449566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2445a30f8f8cSSatish Balay *newmat = mat; 2446a30f8f8cSSatish Balay PetscFunctionReturn(0); 2447a30f8f8cSSatish Balay } 2448a30f8f8cSSatish Balay 2449618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2450618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2451618cc2edSLisandro Dalcin 24529371c9d4SSatish Balay PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) { 24537f489da9SVaclav Hapla PetscBool isbinary; 245495936485SShri Abhyankar 245595936485SShri Abhyankar PetscFunctionBegin; 24569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 24575f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 24589566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 245995936485SShri Abhyankar PetscFunctionReturn(0); 246095936485SShri Abhyankar } 246195936485SShri Abhyankar 2462dcf5cc72SBarry Smith /*XXXXX@ 2463a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2464a30f8f8cSSatish Balay 2465a30f8f8cSSatish Balay Input Parameters: 2466a30f8f8cSSatish Balay . mat - the matrix 2467a30f8f8cSSatish Balay . fact - factor 2468a30f8f8cSSatish Balay 2469c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2470a30f8f8cSSatish Balay 2471a30f8f8cSSatish Balay Level: advanced 2472a30f8f8cSSatish Balay 2473a30f8f8cSSatish Balay Notes: 2474a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2475a30f8f8cSSatish Balay 2476db781477SPatrick Sanan .seealso: `MatSetOption()` 2477dcf5cc72SBarry Smith @XXXXX*/ 2478dcf5cc72SBarry Smith 24799371c9d4SSatish Balay PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) { 248024d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2481f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(a->B)->data; 2482ca54ac64SHong Zhang PetscReal atmp; 248387828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 24841302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 24851302d50aSBarry Smith PetscMPIInt rank, size; 24861302d50aSBarry Smith PetscInt *rowners_bs, dest, count, source; 248787828ca2SBarry Smith PetscScalar *va; 24888a1c53f2SBarry Smith MatScalar *ba; 2489f4c0e9e4SHong Zhang MPI_Status stat; 249024d5174aSHong Zhang 249124d5174aSHong Zhang PetscFunctionBegin; 24925f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 24939566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 24949566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2495f4c0e9e4SHong Zhang 24969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 24979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2498f4c0e9e4SHong Zhang 2499d0f46423SBarry Smith bs = A->rmap->bs; 2500f4c0e9e4SHong Zhang mbs = a->mbs; 2501f4c0e9e4SHong Zhang Mbs = a->Mbs; 2502f4c0e9e4SHong Zhang ba = b->a; 2503f4c0e9e4SHong Zhang bi = b->i; 2504f4c0e9e4SHong Zhang bj = b->j; 2505f4c0e9e4SHong Zhang 2506f4c0e9e4SHong Zhang /* find ownerships */ 2507d0f46423SBarry Smith rowners_bs = A->rmap->range; 2508f4c0e9e4SHong Zhang 2509f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25109566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2511f4c0e9e4SHong Zhang 2512f4c0e9e4SHong Zhang /* row_max for B */ 2513b8475685SHong Zhang if (rank != size - 1) { 2514f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 25159371c9d4SSatish Balay ncols = bi[1] - bi[0]; 25169371c9d4SSatish Balay bi++; 2517f4c0e9e4SHong Zhang brow = bs * i; 2518f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2519f4c0e9e4SHong Zhang bcol = bs * (*bj); 2520f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2521ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 252204d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2523f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 25249371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 25259371c9d4SSatish Balay ba++; 2526ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2527ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2528f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2529f4c0e9e4SHong Zhang } 2530f4c0e9e4SHong Zhang } 2531f4c0e9e4SHong Zhang bj++; 2532f4c0e9e4SHong Zhang } 2533f4c0e9e4SHong Zhang } 2534f4c0e9e4SHong Zhang 2535f4c0e9e4SHong Zhang /* send values to its owners */ 2536f4c0e9e4SHong Zhang for (dest = rank + 1; dest < size; dest++) { 2537f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2538ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 25399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2540ca54ac64SHong Zhang } 2541f4c0e9e4SHong Zhang } 2542f4c0e9e4SHong Zhang 2543f4c0e9e4SHong Zhang /* receive values */ 2544ca54ac64SHong Zhang if (rank) { 2545f4c0e9e4SHong Zhang rvalues = work; 2546ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2547f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 25489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2549f4c0e9e4SHong Zhang /* process values */ 2550f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2551ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2552f4c0e9e4SHong Zhang } 2553f4c0e9e4SHong Zhang } 2554ca54ac64SHong Zhang } 2555f4c0e9e4SHong Zhang 25569566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 25579566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 255824d5174aSHong Zhang PetscFunctionReturn(0); 255924d5174aSHong Zhang } 25602798e883SHong Zhang 25619371c9d4SSatish Balay PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) { 25622798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2563d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 25643649974fSBarry Smith PetscScalar *x, *ptr, *from; 2565ffe4fb16SHong Zhang Vec bb1; 25663649974fSBarry Smith const PetscScalar *b; 2567ffe4fb16SHong Zhang 2568ffe4fb16SHong Zhang PetscFunctionBegin; 25695f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 25705f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2571ffe4fb16SHong Zhang 2572a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 25739566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2574a2b30743SBarry Smith PetscFunctionReturn(0); 2575a2b30743SBarry Smith } 2576a2b30743SBarry Smith 2577ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2578ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 25799566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2580ffe4fb16SHong Zhang its--; 2581ffe4fb16SHong Zhang } 2582ffe4fb16SHong Zhang 25839566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2584ffe4fb16SHong Zhang while (its--) { 2585ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 25869566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2587ffe4fb16SHong Zhang 2588ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25899566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 25909566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 25919566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 25929566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2593ffe4fb16SHong Zhang 25949566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2595ffe4fb16SHong Zhang 2596ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25979566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 25989566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 25999566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2601ffe4fb16SHong Zhang 2602ffe4fb16SHong Zhang /* set slvec1b = 0 */ 26039566063dSJacob Faibussowitsch PetscCall(VecSet(mat->slvec1b, 0.0)); 2604ffe4fb16SHong Zhang 26059566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26069566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26079566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26089566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2609ffe4fb16SHong Zhang 2610ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 26119566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2612ffe4fb16SHong Zhang 2613ffe4fb16SHong Zhang /* local diagonal sweep */ 26149566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2615ffe4fb16SHong Zhang } 26169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2617fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26189566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2619fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26209566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2621fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2622fa22f6d0SBarry Smith Vec xx1; 2623ace3abfcSBarry Smith PetscBool hasop; 262420f1ed55SBarry Smith const PetscScalar *diag; 2625887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 262620f1ed55SBarry Smith PetscInt i, n; 2627fa22f6d0SBarry Smith 2628fa22f6d0SBarry Smith if (!mat->xx1) { 26299566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 26309566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2631fa22f6d0SBarry Smith } 2632fa22f6d0SBarry Smith xx1 = mat->xx1; 2633fa22f6d0SBarry Smith bb1 = mat->bb1; 2634fa22f6d0SBarry Smith 26359566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2636fa22f6d0SBarry Smith 2637fa22f6d0SBarry Smith if (!mat->diag) { 2638effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26399566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 26409566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2641fa22f6d0SBarry Smith } 26429566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2643fa22f6d0SBarry Smith 2644fa22f6d0SBarry Smith if (hasop) { 26459566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 26469566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 264720f1ed55SBarry Smith } else { 264820f1ed55SBarry Smith /* 264920f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 26509566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 26519566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 265220f1ed55SBarry Smith */ 26539566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 26549566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 26559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26569566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26579566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2658887ee2caSBarry Smith if (omega == 1.0) { 265926fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 26609566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2661887ee2caSBarry Smith } else { 266226fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 26639566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2664887ee2caSBarry Smith } 26659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 26669566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 26679566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26689566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 266920f1ed55SBarry Smith } 2670fa22f6d0SBarry Smith 2671fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 26729566063dSJacob Faibussowitsch PetscCall(VecSet(mat->slvec1b, 0.0)); 26739566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 26749566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 26759566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26769566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 26779566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 26789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26799566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26809566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26819566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2682fa22f6d0SBarry Smith 2683fa22f6d0SBarry Smith /* local sweep */ 26849566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 26859566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2686f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 2687ffe4fb16SHong Zhang PetscFunctionReturn(0); 2688ffe4fb16SHong Zhang } 2689ffe4fb16SHong Zhang 2690dfb205c3SBarry Smith /*@ 2691dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2692dfb205c3SBarry Smith CSR format the local rows. 2693dfb205c3SBarry Smith 2694d083f849SBarry Smith Collective 2695dfb205c3SBarry Smith 2696dfb205c3SBarry Smith Input Parameters: 2697dfb205c3SBarry Smith + comm - MPI communicator 2698dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2699dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2700dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2701dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2702dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2703dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2704dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2705483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2706dfb205c3SBarry Smith . j - column indices 2707dfb205c3SBarry Smith - a - matrix values 2708dfb205c3SBarry Smith 2709dfb205c3SBarry Smith Output Parameter: 2710dfb205c3SBarry Smith . mat - the matrix 2711dfb205c3SBarry Smith 2712dfb205c3SBarry Smith Level: intermediate 2713dfb205c3SBarry Smith 2714dfb205c3SBarry Smith Notes: 2715dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2716dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2717dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2718dfb205c3SBarry Smith 2719dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2720dfb205c3SBarry Smith 2721db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2722db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 2723dfb205c3SBarry Smith @*/ 27249371c9d4SSatish Balay PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) { 2725dfb205c3SBarry Smith PetscFunctionBegin; 27265f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 27275f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 27289566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 27299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 27309566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 27319566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 2732dfb205c3SBarry Smith PetscFunctionReturn(0); 2733dfb205c3SBarry Smith } 2734dfb205c3SBarry Smith 2735dfb205c3SBarry Smith /*@C 2736664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 2737dfb205c3SBarry Smith 2738d083f849SBarry Smith Collective 2739dfb205c3SBarry Smith 2740dfb205c3SBarry Smith Input Parameters: 27411c4f3114SJed Brown + B - the matrix 2742dfb205c3SBarry Smith . bs - the block size 2743dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2744dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2745dfb205c3SBarry Smith - v - optional values in the matrix 2746dfb205c3SBarry Smith 2747664954b6SBarry Smith Level: advanced 2748664954b6SBarry Smith 2749664954b6SBarry Smith Notes: 27500cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 27510cd7f59aSBarry Smith and usually the numerical values as well 27520cd7f59aSBarry Smith 275350c5228eSBarry Smith Any entries below the diagonal are ignored 2754dfb205c3SBarry Smith 2755db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ` 2756dfb205c3SBarry Smith @*/ 27579371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) { 2758dfb205c3SBarry Smith PetscFunctionBegin; 2759cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 2760dfb205c3SBarry Smith PetscFunctionReturn(0); 2761dfb205c3SBarry Smith } 2762dfb205c3SBarry Smith 27639371c9d4SSatish Balay PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) { 276410c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 276510c56fdeSHong Zhang PetscInt *indx; 276610c56fdeSHong Zhang PetscScalar *values; 2767dfb205c3SBarry Smith 27684dcd73b1SHong Zhang PetscFunctionBegin; 27699566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 277010c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 277110c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2772de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 277310c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2774de25e9cbSPierre Jolivet PetscMPIInt rank, size; 27754dcd73b1SHong Zhang 27769566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 27779371c9d4SSatish Balay mbs = m / bs; 27789371c9d4SSatish Balay Nbs = N / cbs; 2779*48a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2780da91a574SPierre Jolivet nbs = n / cbs; 27814dcd73b1SHong Zhang 27829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2783d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2784de25e9cbSPierre Jolivet 27859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 27869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2787de25e9cbSPierre Jolivet if (rank == size - 1) { 2788de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 27895f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2790de25e9cbSPierre Jolivet } 2791de25e9cbSPierre Jolivet 2792d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 27939566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 279410c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 27959566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 27964dcd73b1SHong Zhang nnz = nnz / bs; 27974dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 27989566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 27999566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 28004dcd73b1SHong Zhang } 28019566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28029566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 28034dcd73b1SHong Zhang 28049566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 28059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 28069566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 28079566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 28089566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 28099566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2810d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 28114dcd73b1SHong Zhang } 28124dcd73b1SHong Zhang 281310c56fdeSHong Zhang /* numeric phase */ 28149566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28159566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 28164dcd73b1SHong Zhang 28179566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 28184dcd73b1SHong Zhang for (i = 0; i < m; i++) { 28199566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28204dcd73b1SHong Zhang Ii = i + rstart; 28219566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 28229566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28234dcd73b1SHong Zhang } 28249566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 28269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 28274dcd73b1SHong Zhang PetscFunctionReturn(0); 28284dcd73b1SHong Zhang } 2829