1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 74a2ae208SSatish Balay #undef __FUNCT__ 84a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 97087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 10a30f8f8cSSatish Balay { 11f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 12dfbe8321SBarry Smith PetscErrorCode ierr; 13a30f8f8cSSatish Balay 14a30f8f8cSSatish Balay PetscFunctionBegin; 15a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 16a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 17a30f8f8cSSatish Balay PetscFunctionReturn(0); 18a30f8f8cSSatish Balay } 19a30f8f8cSSatish Balay 204a2ae208SSatish Balay #undef __FUNCT__ 214a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 227087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 23a30f8f8cSSatish Balay { 24f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 25dfbe8321SBarry Smith PetscErrorCode ierr; 26a30f8f8cSSatish Balay 27a30f8f8cSSatish Balay PetscFunctionBegin; 28a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 29a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 30a30f8f8cSSatish Balay PetscFunctionReturn(0); 31a30f8f8cSSatish Balay } 32a30f8f8cSSatish Balay 33a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 34a30f8f8cSSatish Balay { \ 35a30f8f8cSSatish Balay \ 36a30f8f8cSSatish Balay brow = row/bs; \ 37a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 38a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 39a30f8f8cSSatish Balay bcol = col/bs; \ 40a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 41a30f8f8cSSatish Balay low = 0; high = nrow; \ 42a30f8f8cSSatish Balay while (high-low > 3) { \ 43a30f8f8cSSatish Balay t = (low+high)/2; \ 44a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 45a30f8f8cSSatish Balay else low = t; \ 46a30f8f8cSSatish Balay } \ 47a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 48a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 49a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 50a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 51a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 52a30f8f8cSSatish Balay else *bap = value; \ 53a30f8f8cSSatish Balay goto a_noinsert; \ 54a30f8f8cSSatish Balay } \ 55a30f8f8cSSatish Balay } \ 56a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 57e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 58fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 59a30f8f8cSSatish Balay N = nrow++ - 1; \ 60a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 61a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 62a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 63a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 64a30f8f8cSSatish Balay } \ 65a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 66a30f8f8cSSatish Balay rp[_i] = bcol; \ 67a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 68e56f5c9eSBarry Smith A->nonzerostate++;\ 69a30f8f8cSSatish Balay a_noinsert:; \ 70a30f8f8cSSatish Balay ailen[brow] = nrow; \ 71a30f8f8cSSatish Balay } 72e5e170daSBarry Smith 73a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 74a30f8f8cSSatish Balay { \ 75a30f8f8cSSatish Balay brow = row/bs; \ 76a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 77a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 78a30f8f8cSSatish Balay bcol = col/bs; \ 79a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 80a30f8f8cSSatish Balay low = 0; high = nrow; \ 81a30f8f8cSSatish Balay while (high-low > 3) { \ 82a30f8f8cSSatish Balay t = (low+high)/2; \ 83a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 84a30f8f8cSSatish Balay else low = t; \ 85a30f8f8cSSatish Balay } \ 86a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 87a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 88a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 89a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 90a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 91a30f8f8cSSatish Balay else *bap = value; \ 92a30f8f8cSSatish Balay goto b_noinsert; \ 93a30f8f8cSSatish Balay } \ 94a30f8f8cSSatish Balay } \ 95a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 96e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 97fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 98a30f8f8cSSatish Balay N = nrow++ - 1; \ 99a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 100a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 101a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 102a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 103a30f8f8cSSatish Balay } \ 104a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 105a30f8f8cSSatish Balay rp[_i] = bcol; \ 106a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 107e56f5c9eSBarry Smith B->nonzerostate++;\ 108a30f8f8cSSatish Balay b_noinsert:; \ 109a30f8f8cSSatish Balay bilen[brow] = nrow; \ 110a30f8f8cSSatish Balay } 111a30f8f8cSSatish Balay 112a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 113a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 114a30f8f8cSSatish Balay */ 1154a2ae208SSatish Balay #undef __FUNCT__ 116dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 117dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 118a30f8f8cSSatish Balay { 119a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 120a30f8f8cSSatish Balay MatScalar value; 121ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 122dfbe8321SBarry Smith PetscErrorCode ierr; 1231302d50aSBarry Smith PetscInt i,j,row,col; 124d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 125d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 126d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 127a30f8f8cSSatish Balay 128a30f8f8cSSatish Balay /* Some Variables required in the macro */ 129a30f8f8cSSatish Balay Mat A = baij->A; 130a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1311302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 132a30f8f8cSSatish Balay MatScalar *aa =a->a; 133a30f8f8cSSatish Balay 134a30f8f8cSSatish Balay Mat B = baij->B; 135a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1361302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 137a30f8f8cSSatish Balay MatScalar *ba =b->a; 138a30f8f8cSSatish Balay 1391302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1401302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 141a30f8f8cSSatish Balay MatScalar *ap,*bap; 142a30f8f8cSSatish Balay 143a30f8f8cSSatish Balay /* for stash */ 1440298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1450298fd71SBarry Smith MatScalar *v_loc = NULL; 146a30f8f8cSSatish Balay 147a30f8f8cSSatish Balay PetscFunctionBegin; 148a30f8f8cSSatish Balay if (!baij->donotstash) { 14959ffdab8SBarry Smith if (n > baij->n_loc) { 15059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 152785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 153785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15426fbe8dcSKarl Rupp 15559ffdab8SBarry Smith baij->n_loc = n; 15659ffdab8SBarry Smith } 15759ffdab8SBarry Smith in_loc = baij->in_loc; 15859ffdab8SBarry Smith v_loc = baij->v_loc; 159a30f8f8cSSatish Balay } 160a30f8f8cSSatish Balay 161a30f8f8cSSatish Balay for (i=0; i<m; i++) { 162a30f8f8cSSatish Balay if (im[i] < 0) continue; 1632515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 164e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 165a30f8f8cSSatish Balay #endif 166a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 167a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 168a30f8f8cSSatish Balay for (j=0; j<n; j++) { 16901b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17001b2bd88SHong Zhang if (a->ignore_ltriangular) { 17101b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17226fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17301b2bd88SHong Zhang } 174a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 175a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 176a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 177a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 178db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 179db4deed7SKarl Rupp else value = v[i+j*m]; 180a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 181a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 182a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 184cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 185a30f8f8cSSatish Balay #endif 186a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 187a30f8f8cSSatish Balay if (mat->was_assembled) { 188a30f8f8cSSatish Balay if (!baij->colmap) { 189ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 190a30f8f8cSSatish Balay } 191a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 192a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19371730473SSatish Balay col = col - 1; 194a30f8f8cSSatish Balay #else 19571730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 196a30f8f8cSSatish Balay #endif 197a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 198ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 199a30f8f8cSSatish Balay col = in[j]; 200a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 201a30f8f8cSSatish Balay B = baij->B; 202a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 203a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 204a30f8f8cSSatish Balay ba = b->a; 20571730473SSatish Balay } else col += in[j]%bs; 206a30f8f8cSSatish Balay } else col = in[j]; 207db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 208db4deed7SKarl Rupp else value = v[i+j*m]; 209a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 210a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 211a30f8f8cSSatish Balay } 212a30f8f8cSSatish Balay } 213a30f8f8cSSatish Balay } else { /* off processor entry */ 2144cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 215a30f8f8cSSatish Balay if (!baij->donotstash) { 2165080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 217a30f8f8cSSatish Balay n_loc = 0; 218a30f8f8cSSatish Balay for (j=0; j<n; j++) { 219f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 220a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 221a30f8f8cSSatish Balay if (roworiented) { 222a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 223a30f8f8cSSatish Balay } else { 224a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 225a30f8f8cSSatish Balay } 226a30f8f8cSSatish Balay n_loc++; 227a30f8f8cSSatish Balay } 228b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 229a30f8f8cSSatish Balay } 230a30f8f8cSSatish Balay } 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay PetscFunctionReturn(0); 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay 2354a2ae208SSatish Balay #undef __FUNCT__ 236dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 237dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 238a30f8f8cSSatish Balay { 2390880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 240f15d580aSBarry Smith const MatScalar *value; 241f15d580aSBarry Smith MatScalar *barray =baij->barray; 242ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 243dfbe8321SBarry Smith PetscErrorCode ierr; 244899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 245899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 246d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2470880e062SHong Zhang 248a30f8f8cSSatish Balay PetscFunctionBegin; 2490880e062SHong Zhang if (!barray) { 250785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 2510880e062SHong Zhang baij->barray = barray; 2520880e062SHong Zhang } 2530880e062SHong Zhang 2540880e062SHong Zhang if (roworiented) { 2550880e062SHong Zhang stepval = (n-1)*bs; 2560880e062SHong Zhang } else { 2570880e062SHong Zhang stepval = (m-1)*bs; 2580880e062SHong Zhang } 2590880e062SHong Zhang for (i=0; i<m; i++) { 2600880e062SHong Zhang if (im[i] < 0) continue; 2612515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 262e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2630880e062SHong Zhang #endif 2640880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2650880e062SHong Zhang row = im[i] - rstart; 2660880e062SHong Zhang for (j=0; j<n; j++) { 267f3f98c53SJed Brown if (im[i] > in[j]) { 268f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 269e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 270f3f98c53SJed Brown } 2710880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2720880e062SHong Zhang if ((roworiented) && (n == 1)) { 273f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2740880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 275f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2760880e062SHong Zhang } else { /* Here a copy is required */ 2770880e062SHong Zhang if (roworiented) { 2780880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2790880e062SHong Zhang } else { 2800880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2810880e062SHong Zhang } 2820880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2830880e062SHong Zhang for (jj=0; jj<bs; jj++) { 2840880e062SHong Zhang *barray++ = *value++; 2850880e062SHong Zhang } 2860880e062SHong Zhang } 2870880e062SHong Zhang barray -=bs2; 2880880e062SHong Zhang } 2890880e062SHong Zhang 2900880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 2910880e062SHong Zhang col = in[j] - cstart; 2920880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 29326fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 2942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 295cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 2960880e062SHong Zhang #endif 2970880e062SHong Zhang else { 2980880e062SHong Zhang if (mat->was_assembled) { 2990880e062SHong Zhang if (!baij->colmap) { 300ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3010880e062SHong Zhang } 3020880e062SHong Zhang 3032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3040880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3051302d50aSBarry Smith { PetscInt data; 3060880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 307e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3080880e062SHong Zhang } 3090880e062SHong Zhang #else 310e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3110880e062SHong Zhang #endif 3120880e062SHong Zhang #endif 3130880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3140880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3150880e062SHong Zhang col = (col - 1)/bs; 3160880e062SHong Zhang #else 3170880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3180880e062SHong Zhang #endif 3190880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 320ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3210880e062SHong Zhang col = in[j]; 3220880e062SHong Zhang } 32326fbe8dcSKarl Rupp } else col = in[j]; 324e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3250880e062SHong Zhang } 3260880e062SHong Zhang } 3270880e062SHong Zhang } else { 3284cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3290880e062SHong Zhang if (!baij->donotstash) { 3300880e062SHong Zhang if (roworiented) { 3310880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3320880e062SHong Zhang } else { 3330880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3340880e062SHong Zhang } 3350880e062SHong Zhang } 3360880e062SHong Zhang } 3370880e062SHong Zhang } 3380880e062SHong Zhang PetscFunctionReturn(0); 339a30f8f8cSSatish Balay } 340a30f8f8cSSatish Balay 3414a2ae208SSatish Balay #undef __FUNCT__ 3424a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3431302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 344a30f8f8cSSatish Balay { 345f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3466849ba73SBarry Smith PetscErrorCode ierr; 347d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 348d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 349a30f8f8cSSatish Balay 350a30f8f8cSSatish Balay PetscFunctionBegin; 351a30f8f8cSSatish Balay for (i=0; i<m; i++) { 352e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 353e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 354a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 355a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 356a30f8f8cSSatish Balay for (j=0; j<n; j++) { 357e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 358e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 359a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 360a30f8f8cSSatish Balay col = idxn[j] - bscstart; 361c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 362a30f8f8cSSatish Balay } else { 363a30f8f8cSSatish Balay if (!baij->colmap) { 364ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 365a30f8f8cSSatish Balay } 366a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 367a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 368a30f8f8cSSatish Balay data--; 369a30f8f8cSSatish Balay #else 370a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 371a30f8f8cSSatish Balay #endif 372a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 373a30f8f8cSSatish Balay else { 374a30f8f8cSSatish Balay col = data + idxn[j]%bs; 375e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 376a30f8f8cSSatish Balay } 377a30f8f8cSSatish Balay } 378a30f8f8cSSatish Balay } 379f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay PetscFunctionReturn(0); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay 3844a2ae208SSatish Balay #undef __FUNCT__ 3854a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 386dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 387a30f8f8cSSatish Balay { 388a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 389dfbe8321SBarry Smith PetscErrorCode ierr; 390a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 391a30f8f8cSSatish Balay 392a30f8f8cSSatish Balay PetscFunctionBegin; 393a30f8f8cSSatish Balay if (baij->size == 1) { 394a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 395a30f8f8cSSatish Balay } else { 396a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 397785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 398a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 399a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 400a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 401a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 402ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4038f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 404a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4050b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4060b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4070b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4080b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 409899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 410d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4110b8dc8d2SHong Zhang MatScalar *v; 4120b8dc8d2SHong Zhang 413dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 414d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4150b8dc8d2SHong Zhang /* Amat */ 4160b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4170b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4180b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4190b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4200b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4210b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4220b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4230b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4240b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4250b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4260b8dc8d2SHong Zhang /* non-diagonal block */ 4270b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4280b8dc8d2SHong Zhang } 4290b8dc8d2SHong Zhang } 4300b8dc8d2SHong Zhang } 4310b8dc8d2SHong Zhang } 4320b8dc8d2SHong Zhang /* Bmat */ 4330b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4340b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4350b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4360b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4370b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4380b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4390b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4400b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4410b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4420b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4430b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4440b8dc8d2SHong Zhang } 4450b8dc8d2SHong Zhang } 4460b8dc8d2SHong Zhang } 4470b8dc8d2SHong Zhang } 448ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4490b8dc8d2SHong Zhang *norm = 0.0; 450d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4510b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4520b8dc8d2SHong Zhang } 45374ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 454f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 455a30f8f8cSSatish Balay } 456a30f8f8cSSatish Balay PetscFunctionReturn(0); 457a30f8f8cSSatish Balay } 458a30f8f8cSSatish Balay 4594a2ae208SSatish Balay #undef __FUNCT__ 4604a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 461dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 462a30f8f8cSSatish Balay { 463a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 464dfbe8321SBarry Smith PetscErrorCode ierr; 4651302d50aSBarry Smith PetscInt nstash,reallocs; 466a30f8f8cSSatish Balay 467a30f8f8cSSatish Balay PetscFunctionBegin; 46826fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 469a30f8f8cSSatish Balay 470d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4711e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 472a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4731e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 474a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4751e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 476a30f8f8cSSatish Balay PetscFunctionReturn(0); 477a30f8f8cSSatish Balay } 478a30f8f8cSSatish Balay 4794a2ae208SSatish Balay #undef __FUNCT__ 4804a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 481dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 482a30f8f8cSSatish Balay { 483a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 484a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 4856849ba73SBarry Smith PetscErrorCode ierr; 48613f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 487e44c0bd4SBarry Smith PetscInt *row,*col; 488ace3abfcSBarry Smith PetscBool other_disassembled; 48913f74950SBarry Smith PetscMPIInt n; 490ace3abfcSBarry Smith PetscBool r1,r2,r3; 491a30f8f8cSSatish Balay MatScalar *val; 492a30f8f8cSSatish Balay 49391c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 494a30f8f8cSSatish Balay PetscFunctionBegin; 4954cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 496a30f8f8cSSatish Balay while (1) { 497a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 498a30f8f8cSSatish Balay if (!flg) break; 499a30f8f8cSSatish Balay 500a30f8f8cSSatish Balay for (i=0; i<n;) { 501a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 50226fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 50326fbe8dcSKarl Rupp if (row[j] != rstart) break; 50426fbe8dcSKarl Rupp } 505a30f8f8cSSatish Balay if (j < n) ncols = j-i; 506a30f8f8cSSatish Balay else ncols = n-i; 507a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 508*4b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 509a30f8f8cSSatish Balay i = j; 510a30f8f8cSSatish Balay } 511a30f8f8cSSatish Balay } 512a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 513a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 514a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 515a30f8f8cSSatish Balay restore the original flags */ 516a30f8f8cSSatish Balay r1 = baij->roworiented; 517a30f8f8cSSatish Balay r2 = a->roworiented; 51891c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 51926fbe8dcSKarl Rupp 520a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 521a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 52226fbe8dcSKarl Rupp 52391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 524a30f8f8cSSatish Balay while (1) { 525a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 526a30f8f8cSSatish Balay if (!flg) break; 527a30f8f8cSSatish Balay 528a30f8f8cSSatish Balay for (i=0; i<n;) { 529a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 53026fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 53126fbe8dcSKarl Rupp if (row[j] != rstart) break; 53226fbe8dcSKarl Rupp } 533a30f8f8cSSatish Balay if (j < n) ncols = j-i; 534a30f8f8cSSatish Balay else ncols = n-i; 535*4b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 536a30f8f8cSSatish Balay i = j; 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay } 539a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 54026fbe8dcSKarl Rupp 541a30f8f8cSSatish Balay baij->roworiented = r1; 542a30f8f8cSSatish Balay a->roworiented = r2; 54326fbe8dcSKarl Rupp 54491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 545a30f8f8cSSatish Balay } 546a30f8f8cSSatish Balay 547a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 548a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 549a30f8f8cSSatish Balay 550a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 551a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 552a30f8f8cSSatish Balay /* 553a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 554a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 555a30f8f8cSSatish Balay */ 556a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 557ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 558a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 559ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 560a30f8f8cSSatish Balay } 561a30f8f8cSSatish Balay } 562a30f8f8cSSatish Balay 563a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 56440781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 565a30f8f8cSSatish Balay } 566a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 567a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 568a30f8f8cSSatish Balay 56974ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 57026fbe8dcSKarl Rupp 571a30f8f8cSSatish Balay baij->rowvalues = 0; 5724f9cfa9eSBarry Smith 5734f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 5744f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 575e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 57609e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 577e56f5c9eSBarry Smith } 578a30f8f8cSSatish Balay PetscFunctionReturn(0); 579a30f8f8cSSatish Balay } 580a30f8f8cSSatish Balay 5817da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 582dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 5839804daf3SBarry Smith #include <petscdraw.h> 5844a2ae208SSatish Balay #undef __FUNCT__ 5854a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 5866849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 587a30f8f8cSSatish Balay { 588a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 589dfbe8321SBarry Smith PetscErrorCode ierr; 590d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 5917da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 592ace3abfcSBarry Smith PetscBool iascii,isdraw; 593b0a32e0cSBarry Smith PetscViewer sviewer; 594f3ef73ceSBarry Smith PetscViewerFormat format; 595a30f8f8cSSatish Balay 596a30f8f8cSSatish Balay PetscFunctionBegin; 597251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 598251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 59932077d6dSBarry Smith if (iascii) { 600b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 601456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 602a30f8f8cSSatish Balay MatInfo info; 603ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 604a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6057b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6067b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 607a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 608e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 609a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 610e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 611b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6127b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 61307d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 614a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 615a30f8f8cSSatish Balay PetscFunctionReturn(0); 616fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 61777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 618a30f8f8cSSatish Balay PetscFunctionReturn(0); 619c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 620c1490034SHong Zhang PetscFunctionReturn(0); 621a30f8f8cSSatish Balay } 622a30f8f8cSSatish Balay } 623a30f8f8cSSatish Balay 624a30f8f8cSSatish Balay if (isdraw) { 625b0a32e0cSBarry Smith PetscDraw draw; 626ace3abfcSBarry Smith PetscBool isnull; 627b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 628b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 629a30f8f8cSSatish Balay } 630a30f8f8cSSatish Balay 6317da1fb6eSBarry Smith { 632a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 633a30f8f8cSSatish Balay Mat A; 63465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 63565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 636d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 637a30f8f8cSSatish Balay MatScalar *a; 6383e219373SBarry Smith const char *matname; 639a30f8f8cSSatish Balay 640f204ca49SKris Buschelman /* Should this be the same type as mat? */ 641ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 642a30f8f8cSSatish Balay if (!rank) { 643f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 644a30f8f8cSSatish Balay } else { 645f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 646a30f8f8cSSatish Balay } 647f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6480298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6492b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6503bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 651a30f8f8cSSatish Balay 652a30f8f8cSSatish Balay /* copy over the A part */ 65365d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 654a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 655785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 656a30f8f8cSSatish Balay 657a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 658e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 65926fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 660a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 661e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 662a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 663dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 66426fbe8dcSKarl Rupp col++; 66526fbe8dcSKarl Rupp a += bs; 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay } 669a30f8f8cSSatish Balay /* copy over the B part */ 67065d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 67165d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 672a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 673e9f7bc9eSHong Zhang 674e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 67526fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 676a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 677a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 678a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 679799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 68026fbe8dcSKarl Rupp col++; 68126fbe8dcSKarl Rupp a += bs; 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay } 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 686a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 687a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 688a30f8f8cSSatish Balay /* 689a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 690b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 691a30f8f8cSSatish Balay */ 692b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 693ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 6943e219373SBarry Smith if (!rank) { 695ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 6967da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 697a30f8f8cSSatish Balay } 698b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 6996bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay PetscFunctionReturn(0); 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay 7044a2ae208SSatish Balay #undef __FUNCT__ 7054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 706dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 707a30f8f8cSSatish Balay { 708dfbe8321SBarry Smith PetscErrorCode ierr; 709ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 710a30f8f8cSSatish Balay 711a30f8f8cSSatish Balay PetscFunctionBegin; 712251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 713251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 714251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 715251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 71632077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 717a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay PetscFunctionReturn(0); 720a30f8f8cSSatish Balay } 721a30f8f8cSSatish Balay 7224a2ae208SSatish Balay #undef __FUNCT__ 7234a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 724dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 725a30f8f8cSSatish Balay { 726a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 727dfbe8321SBarry Smith PetscErrorCode ierr; 728a30f8f8cSSatish Balay 729a30f8f8cSSatish Balay PetscFunctionBegin; 730a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 731d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 732a30f8f8cSSatish Balay #endif 733a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 734a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7356bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7366bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 737a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7386bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 739a30f8f8cSSatish Balay #else 74005b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 741a30f8f8cSSatish Balay #endif 74205b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7436bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7446bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7456bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7466bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7476bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7486bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7496bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7506bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7515755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 75205b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 75305b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7546bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7556bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7566bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 757ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 75805b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 759a30f8f8cSSatish Balay #endif 76059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 76159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 762899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 763bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 764901853e0SKris Buschelman 765dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 766bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 767bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 768bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 769bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 770bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 771a30f8f8cSSatish Balay PetscFunctionReturn(0); 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay 7744a2ae208SSatish Balay #undef __FUNCT__ 775547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 776547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 777547795f9SHong Zhang { 778547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 779547795f9SHong Zhang PetscErrorCode ierr; 780547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 781547795f9SHong Zhang PetscScalar *x,*from; 782547795f9SHong Zhang 783547795f9SHong Zhang PetscFunctionBegin; 784547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 785e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 786547795f9SHong Zhang 787547795f9SHong Zhang /* diagonal part */ 788547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 789547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 790547795f9SHong Zhang 791547795f9SHong Zhang /* subdiagonal part */ 792547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 793547795f9SHong Zhang 794547795f9SHong Zhang /* copy x into the vec slvec0 */ 795547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 796547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 797547795f9SHong Zhang 798547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 799547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 800547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 801547795f9SHong Zhang 802547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 803547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 804547795f9SHong Zhang /* supperdiagonal part */ 805547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 806547795f9SHong Zhang PetscFunctionReturn(0); 807547795f9SHong Zhang } 808547795f9SHong Zhang 809547795f9SHong Zhang #undef __FUNCT__ 810a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 811dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 812a9d4b620SHong Zhang { 813a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 814dfbe8321SBarry Smith PetscErrorCode ierr; 815d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 816fa22f6d0SBarry Smith PetscScalar *x,*from; 817a9d4b620SHong Zhang 818a9d4b620SHong Zhang PetscFunctionBegin; 819a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 820e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 821a9d4b620SHong Zhang 822a9d4b620SHong Zhang /* diagonal part */ 823a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 824fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 825a9d4b620SHong Zhang 826a9d4b620SHong Zhang /* subdiagonal part */ 827a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 828fc165ae2SBarry Smith 829a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8301ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8311ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 832a9d4b620SHong Zhang 833fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 834fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8351ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 836fc165ae2SBarry Smith 837fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 838ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 839a9d4b620SHong Zhang /* supperdiagonal part */ 840a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 841a9d4b620SHong Zhang PetscFunctionReturn(0); 842a9d4b620SHong Zhang } 843a9d4b620SHong Zhang 844a9d4b620SHong Zhang #undef __FUNCT__ 84540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 846dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 847a30f8f8cSSatish Balay { 848a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 849dfbe8321SBarry Smith PetscErrorCode ierr; 8501302d50aSBarry Smith PetscInt nt; 851a30f8f8cSSatish Balay 852a30f8f8cSSatish Balay PetscFunctionBegin; 853a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 854e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 855e7e72b3dSBarry Smith 856a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 857e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 85865d70643SHong Zhang 859ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 860b941877fSHong Zhang /* do diagonal part */ 861b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 862b941877fSHong Zhang /* do supperdiagonal part */ 863ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 864b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 865b941877fSHong Zhang /* do subdiagonal part */ 866b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 867ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 868ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 869a30f8f8cSSatish Balay PetscFunctionReturn(0); 870a30f8f8cSSatish Balay } 871a30f8f8cSSatish Balay 8724a2ae208SSatish Balay #undef __FUNCT__ 8734a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 874dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 875a30f8f8cSSatish Balay { 876de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 877dfbe8321SBarry Smith PetscErrorCode ierr; 878d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 879a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 880a9d4b620SHong Zhang 881a9d4b620SHong Zhang PetscFunctionBegin; 882a9d4b620SHong Zhang /* 883ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 8840ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 885a9d4b620SHong Zhang */ 886a9d4b620SHong Zhang /* diagonal part */ 887a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 8882dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 889a9d4b620SHong Zhang 890a9d4b620SHong Zhang /* subdiagonal part */ 891a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 892a9d4b620SHong Zhang 893a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8941ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8951ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 896a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 8971ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 898a9d4b620SHong Zhang 899ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9001ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 901ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 902a9d4b620SHong Zhang 903a9d4b620SHong Zhang /* supperdiagonal part */ 904a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 905a9d4b620SHong Zhang PetscFunctionReturn(0); 906a9d4b620SHong Zhang } 907a9d4b620SHong Zhang 908a9d4b620SHong Zhang #undef __FUNCT__ 909a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 910dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 911a9d4b620SHong Zhang { 912a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 913dfbe8321SBarry Smith PetscErrorCode ierr; 914a30f8f8cSSatish Balay 915a30f8f8cSSatish Balay PetscFunctionBegin; 916ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 917b941877fSHong Zhang /* do diagonal part */ 918b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 919b941877fSHong Zhang /* do supperdiagonal part */ 920ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 921de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 922de8b6608SHong Zhang 923b941877fSHong Zhang /* do subdiagonal part */ 924a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 925ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 926ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 927a30f8f8cSSatish Balay PetscFunctionReturn(0); 928a30f8f8cSSatish Balay } 929a30f8f8cSSatish Balay 930a30f8f8cSSatish Balay /* 931a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 932a30f8f8cSSatish Balay diagonal block 933a30f8f8cSSatish Balay */ 9344a2ae208SSatish Balay #undef __FUNCT__ 9354a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 936dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 937a30f8f8cSSatish Balay { 938a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 939dfbe8321SBarry Smith PetscErrorCode ierr; 940a30f8f8cSSatish Balay 941a30f8f8cSSatish Balay PetscFunctionBegin; 942e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 943a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 944a30f8f8cSSatish Balay PetscFunctionReturn(0); 945a30f8f8cSSatish Balay } 946a30f8f8cSSatish Balay 9474a2ae208SSatish Balay #undef __FUNCT__ 9484a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 949f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 950a30f8f8cSSatish Balay { 951a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 952dfbe8321SBarry Smith PetscErrorCode ierr; 953a30f8f8cSSatish Balay 954a30f8f8cSSatish Balay PetscFunctionBegin; 955f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 956f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 957a30f8f8cSSatish Balay PetscFunctionReturn(0); 958a30f8f8cSSatish Balay } 959a30f8f8cSSatish Balay 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9621302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 963a30f8f8cSSatish Balay { 964d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 965d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 966d0d4cfc2SHong Zhang PetscErrorCode ierr; 967d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 968d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 969899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 970d0d4cfc2SHong Zhang 971a30f8f8cSSatish Balay PetscFunctionBegin; 972e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 973d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 974d0d4cfc2SHong Zhang 975d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 976d0d4cfc2SHong Zhang /* 977d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 978d0d4cfc2SHong Zhang */ 979d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 980d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 981d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 982d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 983d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 98426fbe8dcSKarl Rupp if (max < tmp) max = tmp; 985d0d4cfc2SHong Zhang } 986dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 987d0d4cfc2SHong Zhang } 988d0d4cfc2SHong Zhang 989e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 990d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 991d0d4cfc2SHong Zhang 992d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 993d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 994d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 995d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 996d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 997d0d4cfc2SHong Zhang nztot = nzA + nzB; 998d0d4cfc2SHong Zhang 999d0d4cfc2SHong Zhang cmap = mat->garray; 1000d0d4cfc2SHong Zhang if (v || idx) { 1001d0d4cfc2SHong Zhang if (nztot) { 1002d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1003d0d4cfc2SHong Zhang PetscInt imark = -1; 1004d0d4cfc2SHong Zhang if (v) { 1005d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1006d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1007d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1008d0d4cfc2SHong Zhang else break; 1009d0d4cfc2SHong Zhang } 1010d0d4cfc2SHong Zhang imark = i; 1011d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1012d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1013d0d4cfc2SHong Zhang } 1014d0d4cfc2SHong Zhang if (idx) { 1015d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1016d0d4cfc2SHong Zhang if (imark > -1) { 1017d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1018d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1019d0d4cfc2SHong Zhang } 1020d0d4cfc2SHong Zhang } else { 1021d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 102226fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1023d0d4cfc2SHong Zhang else break; 1024d0d4cfc2SHong Zhang } 1025d0d4cfc2SHong Zhang imark = i; 1026d0d4cfc2SHong Zhang } 1027d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1028d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1029d0d4cfc2SHong Zhang } 1030d0d4cfc2SHong Zhang } else { 1031d0d4cfc2SHong Zhang if (idx) *idx = 0; 1032d0d4cfc2SHong Zhang if (v) *v = 0; 1033d0d4cfc2SHong Zhang } 1034d0d4cfc2SHong Zhang } 1035d0d4cfc2SHong Zhang *nz = nztot; 1036d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1037d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1038a30f8f8cSSatish Balay PetscFunctionReturn(0); 1039a30f8f8cSSatish Balay } 1040a30f8f8cSSatish Balay 10414a2ae208SSatish Balay #undef __FUNCT__ 10424a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10431302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1044a30f8f8cSSatish Balay { 1045a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1046a30f8f8cSSatish Balay 1047a30f8f8cSSatish Balay PetscFunctionBegin; 1048e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1049a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1050a30f8f8cSSatish Balay PetscFunctionReturn(0); 1051a30f8f8cSSatish Balay } 1052a30f8f8cSSatish Balay 10534a2ae208SSatish Balay #undef __FUNCT__ 1054d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1055d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1056d0d4cfc2SHong Zhang { 1057d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1058d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1059d0d4cfc2SHong Zhang 1060d0d4cfc2SHong Zhang PetscFunctionBegin; 1061d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1062d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1063d0d4cfc2SHong Zhang } 1064d0d4cfc2SHong Zhang #undef __FUNCT__ 1065d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1066d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1067d0d4cfc2SHong Zhang { 1068d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1069d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1070d0d4cfc2SHong Zhang 1071d0d4cfc2SHong Zhang PetscFunctionBegin; 1072d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1073d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1074d0d4cfc2SHong Zhang } 1075d0d4cfc2SHong Zhang 1076d0d4cfc2SHong Zhang #undef __FUNCT__ 107799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 107899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 107999cafbc1SBarry Smith { 108099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 108199cafbc1SBarry Smith PetscErrorCode ierr; 108299cafbc1SBarry Smith 108399cafbc1SBarry Smith PetscFunctionBegin; 108499cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 108599cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 108699cafbc1SBarry Smith PetscFunctionReturn(0); 108799cafbc1SBarry Smith } 108899cafbc1SBarry Smith 108999cafbc1SBarry Smith #undef __FUNCT__ 109099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 109199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 109299cafbc1SBarry Smith { 109399cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 109499cafbc1SBarry Smith PetscErrorCode ierr; 109599cafbc1SBarry Smith 109699cafbc1SBarry Smith PetscFunctionBegin; 109799cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 109899cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 109999cafbc1SBarry Smith PetscFunctionReturn(0); 110099cafbc1SBarry Smith } 110199cafbc1SBarry Smith 110299cafbc1SBarry Smith #undef __FUNCT__ 11034a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1104dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1105a30f8f8cSSatish Balay { 1106a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1107dfbe8321SBarry Smith PetscErrorCode ierr; 1108a30f8f8cSSatish Balay 1109a30f8f8cSSatish Balay PetscFunctionBegin; 1110a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1111a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1112a30f8f8cSSatish Balay PetscFunctionReturn(0); 1113a30f8f8cSSatish Balay } 1114a30f8f8cSSatish Balay 11154a2ae208SSatish Balay #undef __FUNCT__ 11164a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1117dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1118a30f8f8cSSatish Balay { 1119a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1120a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1121dfbe8321SBarry Smith PetscErrorCode ierr; 1122a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1123a30f8f8cSSatish Balay 1124a30f8f8cSSatish Balay PetscFunctionBegin; 1125d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 112626fbe8dcSKarl Rupp 1127a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 112826fbe8dcSKarl Rupp 1129a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1130a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 113126fbe8dcSKarl Rupp 1132a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 113326fbe8dcSKarl Rupp 1134a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1135a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1136a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1137a30f8f8cSSatish Balay info->nz_used = isend[0]; 1138a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1139a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1140a30f8f8cSSatish Balay info->memory = isend[3]; 1141a30f8f8cSSatish Balay info->mallocs = isend[4]; 1142a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1143ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 114426fbe8dcSKarl Rupp 1145a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1146a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1147a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1148a30f8f8cSSatish Balay info->memory = irecv[3]; 1149a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1150a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1151ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 115226fbe8dcSKarl Rupp 1153a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1154a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1155a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1156a30f8f8cSSatish Balay info->memory = irecv[3]; 1157a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1158f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1159a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1160a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1161a30f8f8cSSatish Balay info->factor_mallocs = 0; 1162a30f8f8cSSatish Balay PetscFunctionReturn(0); 1163a30f8f8cSSatish Balay } 1164a30f8f8cSSatish Balay 11654a2ae208SSatish Balay #undef __FUNCT__ 11664a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1167ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1168a30f8f8cSSatish Balay { 1169a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1170d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1171dfbe8321SBarry Smith PetscErrorCode ierr; 1172a30f8f8cSSatish Balay 1173a30f8f8cSSatish Balay PetscFunctionBegin; 1174e98b92d7SKris Buschelman switch (op) { 1175512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1176e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 117728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1178a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1179e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 11804e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 11814e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1182e98b92d7SKris Buschelman break; 1183e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 11844e0d8c25SBarry Smith a->roworiented = flg; 118526fbe8dcSKarl Rupp 11864e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 11874e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1188e98b92d7SKris Buschelman break; 11894e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1190290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1191e98b92d7SKris Buschelman break; 1192e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 11934e0d8c25SBarry Smith a->donotstash = flg; 1194e98b92d7SKris Buschelman break; 1195e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 11964e0d8c25SBarry Smith a->ht_flag = flg; 1197e98b92d7SKris Buschelman break; 11989a4540c5SBarry Smith case MAT_HERMITIAN: 1199e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1200eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 120126fbe8dcSKarl Rupp 1202547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1203eeffb40dSHong Zhang break; 1204ffa07934SHong Zhang case MAT_SPD: 1205ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1206ffa07934SHong Zhang A->spd = flg; 1207ffa07934SHong Zhang if (flg) { 1208ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1209ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1210ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1211ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1212ffa07934SHong Zhang } 1213ffa07934SHong Zhang break; 121477e54ba9SKris Buschelman case MAT_SYMMETRIC: 1215eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1216eeffb40dSHong Zhang break; 121777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1218eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1219eeffb40dSHong Zhang break; 12209a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1221e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1222290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 122377e54ba9SKris Buschelman break; 1224d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12254e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1226d0d4cfc2SHong Zhang break; 1227d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12284e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1229d0d4cfc2SHong Zhang break; 1230d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12314e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1232d0d4cfc2SHong Zhang break; 1233e98b92d7SKris Buschelman default: 1234e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1235a30f8f8cSSatish Balay } 1236a30f8f8cSSatish Balay PetscFunctionReturn(0); 1237a30f8f8cSSatish Balay } 1238a30f8f8cSSatish Balay 12394a2ae208SSatish Balay #undef __FUNCT__ 12408115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1241fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1242a30f8f8cSSatish Balay { 1243dfbe8321SBarry Smith PetscErrorCode ierr; 12446e111a19SKarl Rupp 1245a30f8f8cSSatish Balay PetscFunctionBegin; 1246815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1247999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1248fc4dec0aSBarry Smith } 12498115998fSBarry Smith PetscFunctionReturn(0); 1250a30f8f8cSSatish Balay } 1251a30f8f8cSSatish Balay 12524a2ae208SSatish Balay #undef __FUNCT__ 12534a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1254dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1255a30f8f8cSSatish Balay { 1256a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1257a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1258dfbe8321SBarry Smith PetscErrorCode ierr; 12595e90f9d9SHong Zhang PetscInt nv,m,n; 1260ace3abfcSBarry Smith PetscBool flg; 1261a30f8f8cSSatish Balay 1262a30f8f8cSSatish Balay PetscFunctionBegin; 1263a30f8f8cSSatish Balay if (ll != rr) { 1264b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1265e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1266a30f8f8cSSatish Balay } 1267b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1268b3bf805bSHong Zhang 12695e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1270e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1271b3bf805bSHong Zhang 12725e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1273e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12745e90f9d9SHong Zhang 1275ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12765e90f9d9SHong Zhang 12775e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 12780298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 12795e90f9d9SHong Zhang 12805e90f9d9SHong Zhang /* scale the diagonal part */ 1281a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1282a30f8f8cSSatish Balay 12835e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1284ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12850298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1286a30f8f8cSSatish Balay PetscFunctionReturn(0); 1287a30f8f8cSSatish Balay } 1288a30f8f8cSSatish Balay 12894a2ae208SSatish Balay #undef __FUNCT__ 12904a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1291dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1292a30f8f8cSSatish Balay { 1293f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1294dfbe8321SBarry Smith PetscErrorCode ierr; 1295a30f8f8cSSatish Balay 1296a30f8f8cSSatish Balay PetscFunctionBegin; 1297a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1298a30f8f8cSSatish Balay PetscFunctionReturn(0); 1299a30f8f8cSSatish Balay } 1300a30f8f8cSSatish Balay 13016849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1302a30f8f8cSSatish Balay 13034a2ae208SSatish Balay #undef __FUNCT__ 13044a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1305ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1306a30f8f8cSSatish Balay { 1307a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1308a30f8f8cSSatish Balay Mat a,b,c,d; 1309ace3abfcSBarry Smith PetscBool flg; 1310dfbe8321SBarry Smith PetscErrorCode ierr; 1311a30f8f8cSSatish Balay 1312a30f8f8cSSatish Balay PetscFunctionBegin; 1313a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1314a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1315a30f8f8cSSatish Balay 1316a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1317abc0a331SBarry Smith if (flg) { 1318a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay } 1320ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1321a30f8f8cSSatish Balay PetscFunctionReturn(0); 1322a30f8f8cSSatish Balay } 1323a30f8f8cSSatish Balay 13244a2ae208SSatish Balay #undef __FUNCT__ 13253c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13263c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13273c896bc6SHong Zhang { 13283c896bc6SHong Zhang PetscErrorCode ierr; 13293c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 13303c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 13313c896bc6SHong Zhang 13323c896bc6SHong Zhang PetscFunctionBegin; 13333c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13343c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1335d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13363c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1337d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13383c896bc6SHong Zhang } else { 13393c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13403c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13413c896bc6SHong Zhang } 13423c896bc6SHong Zhang PetscFunctionReturn(0); 13433c896bc6SHong Zhang } 13443c896bc6SHong Zhang 13453c896bc6SHong Zhang #undef __FUNCT__ 13464994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 13474994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1348273d9f13SBarry Smith { 1349dfbe8321SBarry Smith PetscErrorCode ierr; 1350273d9f13SBarry Smith 1351273d9f13SBarry Smith PetscFunctionBegin; 1352535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1353273d9f13SBarry Smith PetscFunctionReturn(0); 1354273d9f13SBarry Smith } 1355a5e6ed63SBarry Smith 13564fe895cdSHong Zhang #undef __FUNCT__ 13574fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13584fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13594fe895cdSHong Zhang { 13604fe895cdSHong Zhang PetscErrorCode ierr; 13614fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 13624fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13634fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13644fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13654fe895cdSHong Zhang 13664fe895cdSHong Zhang PetscFunctionBegin; 13674fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13684fe895cdSHong Zhang PetscScalar alpha = a; 13694fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 13704fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1371c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 13728b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 13734fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 13744fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1375c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 13768b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1377a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 13784fe895cdSHong Zhang } else { 13794de5dceeSHong Zhang Mat B; 13804de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 13814de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1382d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13834de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 13844de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 13854de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 13864de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 13874de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 13884de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 13894de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 13904de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 13914de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 13924de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 13934de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 13944de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 13954de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 13964de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 13974de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1398d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 13994de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 14004fe895cdSHong Zhang } 14014fe895cdSHong Zhang PetscFunctionReturn(0); 14024fe895cdSHong Zhang } 14034fe895cdSHong Zhang 1404a5e6ed63SBarry Smith #undef __FUNCT__ 1405a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14061302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1407a5e6ed63SBarry Smith { 14086849ba73SBarry Smith PetscErrorCode ierr; 14091302d50aSBarry Smith PetscInt i; 1410ace3abfcSBarry Smith PetscBool flg; 1411a5e6ed63SBarry Smith 14126849ba73SBarry Smith PetscFunctionBegin; 1413a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1414a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1415e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1416a5e6ed63SBarry Smith } 1417a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1418a5e6ed63SBarry Smith PetscFunctionReturn(0); 1419a5e6ed63SBarry Smith } 1420a5e6ed63SBarry Smith 1421a5e6ed63SBarry Smith 1422a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 14233964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1424a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1425a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1426a9d4b620SHong Zhang MatMult_MPISBAIJ, 142797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1428431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1429431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1430a30f8f8cSSatish Balay 0, 1431a30f8f8cSSatish Balay 0, 1432a30f8f8cSSatish Balay 0, 143397304618SKris Buschelman /* 10*/ 0, 1434a30f8f8cSSatish Balay 0, 1435a30f8f8cSSatish Balay 0, 143641f059aeSBarry Smith MatSOR_MPISBAIJ, 1437a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 143897304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1439a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1440a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1441a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1442a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 144397304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1444a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1445a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1446a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1447d519adbfSMatthew Knepley /* 24*/ 0, 1448a30f8f8cSSatish Balay 0, 1449a30f8f8cSSatish Balay 0, 1450a30f8f8cSSatish Balay 0, 1451a30f8f8cSSatish Balay 0, 14524994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1453b5df2d14SHong Zhang 0, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 1456a30f8f8cSSatish Balay 0, 1457d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 1462d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1463a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1464d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1465a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14663c896bc6SHong Zhang MatCopy_MPISBAIJ, 1467d519adbfSMatthew Knepley /* 44*/ 0, 1468a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 1472f73d5cc4SBarry Smith /* 49*/ 0, 1473a30f8f8cSSatish Balay 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477d519adbfSMatthew Knepley /* 54*/ 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1482d519adbfSMatthew Knepley /* 59*/ 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485357abbc8SBarry Smith 0, 148624d5174aSHong Zhang 0, 1487d519adbfSMatthew Knepley /* 64*/ 0, 148824d5174aSHong Zhang 0, 148924d5174aSHong Zhang 0, 149024d5174aSHong Zhang 0, 149124d5174aSHong Zhang 0, 1492d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 149324d5174aSHong Zhang 0, 149497304618SKris Buschelman 0, 149597304618SKris Buschelman 0, 149697304618SKris Buschelman 0, 1497d519adbfSMatthew Knepley /* 74*/ 0, 149897304618SKris Buschelman 0, 149997304618SKris Buschelman 0, 150097304618SKris Buschelman 0, 150197304618SKris Buschelman 0, 1502d519adbfSMatthew Knepley /* 79*/ 0, 150397304618SKris Buschelman 0, 150497304618SKris Buschelman 0, 150597304618SKris Buschelman 0, 15065bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1507d519adbfSMatthew Knepley /* 84*/ 0, 1508865e5f61SKris Buschelman 0, 1509865e5f61SKris Buschelman 0, 1510865e5f61SKris Buschelman 0, 1511865e5f61SKris Buschelman 0, 1512d519adbfSMatthew Knepley /* 89*/ 0, 1513865e5f61SKris Buschelman 0, 1514865e5f61SKris Buschelman 0, 1515865e5f61SKris Buschelman 0, 1516865e5f61SKris Buschelman 0, 1517d519adbfSMatthew Knepley /* 94*/ 0, 1518865e5f61SKris Buschelman 0, 1519865e5f61SKris Buschelman 0, 152099cafbc1SBarry Smith 0, 152199cafbc1SBarry Smith 0, 1522d519adbfSMatthew Knepley /* 99*/ 0, 152399cafbc1SBarry Smith 0, 152499cafbc1SBarry Smith 0, 152599cafbc1SBarry Smith 0, 152699cafbc1SBarry Smith 0, 1527d519adbfSMatthew Knepley /*104*/ 0, 152899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1529d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1530d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 153195936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 153295936485SShri Abhyankar /*109*/ 0, 153395936485SShri Abhyankar 0, 153495936485SShri Abhyankar 0, 153595936485SShri Abhyankar 0, 153695936485SShri Abhyankar 0, 153795936485SShri Abhyankar /*114*/ 0, 153895936485SShri Abhyankar 0, 153995936485SShri Abhyankar 0, 154095936485SShri Abhyankar 0, 154195936485SShri Abhyankar 0, 154295936485SShri Abhyankar /*119*/ 0, 154395936485SShri Abhyankar 0, 154495936485SShri Abhyankar 0, 15453964eb88SJed Brown 0, 15463964eb88SJed Brown 0, 15473964eb88SJed Brown /*124*/ 0, 15483964eb88SJed Brown 0, 15493964eb88SJed Brown 0, 15503964eb88SJed Brown 0, 15513964eb88SJed Brown 0, 15523964eb88SJed Brown /*129*/ 0, 15533964eb88SJed Brown 0, 15543964eb88SJed Brown 0, 15553964eb88SJed Brown 0, 15563964eb88SJed Brown 0, 15573964eb88SJed Brown /*134*/ 0, 15583964eb88SJed Brown 0, 15593964eb88SJed Brown 0, 15603964eb88SJed Brown 0, 15613964eb88SJed Brown 0, 15623964eb88SJed Brown /*139*/ 0, 1563f9426fe0SMark Adams 0, 15645bba2384SShri Abhyankar 0 156599cafbc1SBarry Smith }; 1566a30f8f8cSSatish Balay 1567a30f8f8cSSatish Balay 15684a2ae208SSatish Balay #undef __FUNCT__ 15694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 157011bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1571a30f8f8cSSatish Balay { 1572a30f8f8cSSatish Balay PetscFunctionBegin; 1573a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1574a30f8f8cSSatish Balay PetscFunctionReturn(0); 1575a30f8f8cSSatish Balay } 1576a30f8f8cSSatish Balay 15774a2ae208SSatish Balay #undef __FUNCT__ 1578a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1579b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1580a23d5eceSKris Buschelman { 1581a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1582dfbe8321SBarry Smith PetscErrorCode ierr; 1583535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1584a23d5eceSKris Buschelman 1585a23d5eceSKris Buschelman PetscFunctionBegin; 158633d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 158726283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 158826283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1589e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1590899cda47SBarry Smith 1591a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1592d0f46423SBarry Smith mbs = B->rmap->n/bs; 1593d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1594c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1595a23d5eceSKris Buschelman 1596d0f46423SBarry Smith B->rmap->bs = bs; 1597a23d5eceSKris Buschelman b->bs2 = bs*bs; 1598a23d5eceSKris Buschelman b->mbs = mbs; 1599a23d5eceSKris Buschelman b->nbs = mbs; 1600a23d5eceSKris Buschelman b->Mbs = Mbs; 1601a23d5eceSKris Buschelman b->Nbs = Mbs; 1602a23d5eceSKris Buschelman 1603a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1604d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1605a23d5eceSKris Buschelman } 1606d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1607d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1608a23d5eceSKris Buschelman 1609d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1610d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1611a23d5eceSKris Buschelman 1612526dfc15SBarry Smith if (!B->preallocated) { 1613f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1614d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16159c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 16163bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1617f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1618d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16194aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 16203bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1621ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1622526dfc15SBarry Smith } 1623a23d5eceSKris Buschelman 1624526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1625526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 162626fbe8dcSKarl Rupp 1627526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1628a23d5eceSKris Buschelman PetscFunctionReturn(0); 1629a23d5eceSKris Buschelman } 1630a23d5eceSKris Buschelman 1631dfb205c3SBarry Smith #undef __FUNCT__ 1632dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1633dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1634dfb205c3SBarry Smith { 1635dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1636dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1637dfb205c3SBarry Smith const PetscInt *JJ =0; 1638dfb205c3SBarry Smith PetscScalar *values=0; 1639dfb205c3SBarry Smith PetscErrorCode ierr; 1640dfb205c3SBarry Smith 1641dfb205c3SBarry Smith PetscFunctionBegin; 1642ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1643dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1644dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1645dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1646dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1647e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1648dfb205c3SBarry Smith m = B->rmap->n/bs; 1649dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1650dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1651dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1652dfb205c3SBarry Smith 1653dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1654dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1655dfb205c3SBarry Smith for (i=0; i<m; i++) { 1656dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1657dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1658dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1659dfb205c3SBarry Smith JJ = jj + ii[i]; 1660dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1661dfb205c3SBarry Smith if (*JJ >= cstart) break; 1662dfb205c3SBarry Smith JJ++; 1663dfb205c3SBarry Smith } 1664dfb205c3SBarry Smith d = 0; 1665dfb205c3SBarry Smith for (; j<nz; j++) { 1666dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1667dfb205c3SBarry Smith d++; 1668dfb205c3SBarry Smith } 1669dfb205c3SBarry Smith d_nnz[i] = d; 1670dfb205c3SBarry Smith o_nnz[i] = nz - d; 1671dfb205c3SBarry Smith } 1672dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1673dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1674dfb205c3SBarry Smith 1675dfb205c3SBarry Smith values = (PetscScalar*)V; 1676dfb205c3SBarry Smith if (!values) { 1677785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1678dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1679dfb205c3SBarry Smith } 1680dfb205c3SBarry Smith for (i=0; i<m; i++) { 1681dfb205c3SBarry Smith PetscInt row = i + rstart; 1682dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1683dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1684dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1685dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1686dfb205c3SBarry Smith } 1687dfb205c3SBarry Smith 1688dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1689dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1690dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16917827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1692dfb205c3SBarry Smith PetscFunctionReturn(0); 1693dfb205c3SBarry Smith } 1694dfb205c3SBarry Smith 1695611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 16968cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1697611f576cSBarry Smith #endif 1698b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 16998cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1700b5e56a35SBarry Smith #endif 17015c9eb25fSBarry Smith 17020bad9183SKris Buschelman /*MC 1703fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1704828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1705828413b8SBarry Smith the matrix is stored. 1706828413b8SBarry Smith 1707828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1708828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17090bad9183SKris Buschelman 17100bad9183SKris Buschelman Options Database Keys: 17110bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17120bad9183SKris Buschelman 17130bad9183SKris Buschelman Level: beginner 17140bad9183SKris Buschelman 17150bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17160bad9183SKris Buschelman M*/ 17170bad9183SKris Buschelman 17188cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1719aa5a9175SDahai Guo 1720a23d5eceSKris Buschelman #undef __FUNCT__ 17214a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17228cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1723b5df2d14SHong Zhang { 1724b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1725dfbe8321SBarry Smith PetscErrorCode ierr; 1726ace3abfcSBarry Smith PetscBool flg; 1727b5df2d14SHong Zhang 1728b5df2d14SHong Zhang PetscFunctionBegin; 1729b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1730b0a32e0cSBarry Smith B->data = (void*)b; 1731b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1732b5df2d14SHong Zhang 1733b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1734b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1735b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1736b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 173726fbe8dcSKarl Rupp 1738ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1739ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1740b5df2d14SHong Zhang 1741b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1742785e854fSJed Brown ierr = PetscMalloc1((b->size+2),&b->rangebs);CHKERRQ(ierr); 1743b5df2d14SHong Zhang 1744b5df2d14SHong Zhang /* build cache for off array entries formed */ 1745ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 174626fbe8dcSKarl Rupp 1747b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 17480298fd71SBarry Smith b->colmap = NULL; 17490298fd71SBarry Smith b->garray = NULL; 1750b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1751b5df2d14SHong Zhang 1752b5df2d14SHong Zhang /* stuff used in block assembly */ 1753b5df2d14SHong Zhang b->barray = 0; 1754b5df2d14SHong Zhang 1755b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1756b5df2d14SHong Zhang b->lvec = 0; 1757b5df2d14SHong Zhang b->Mvctx = 0; 175840781036SHong Zhang b->slvec0 = 0; 175940781036SHong Zhang b->slvec0b = 0; 176040781036SHong Zhang b->slvec1 = 0; 176140781036SHong Zhang b->slvec1a = 0; 176240781036SHong Zhang b->slvec1b = 0; 176340781036SHong Zhang b->sMvctx = 0; 1764b5df2d14SHong Zhang 1765b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1766b5df2d14SHong Zhang b->rowindices = 0; 1767b5df2d14SHong Zhang b->rowvalues = 0; 1768b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1769b5df2d14SHong Zhang 1770b5df2d14SHong Zhang /* hash table stuff */ 1771b5df2d14SHong Zhang b->ht = 0; 1772b5df2d14SHong Zhang b->hd = 0; 1773b5df2d14SHong Zhang b->ht_size = 0; 1774b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1775b5df2d14SHong Zhang b->ht_fact = 0; 1776b5df2d14SHong Zhang b->ht_total_ct = 0; 1777b5df2d14SHong Zhang b->ht_insert_ct = 0; 1778b5df2d14SHong Zhang 17797a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 17807a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 17817a868f3eSHong Zhang 178259ffdab8SBarry Smith b->in_loc = 0; 178359ffdab8SBarry Smith b->v_loc = 0; 178459ffdab8SBarry Smith b->n_loc = 0; 1785ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17860298fd71SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr); 1787b5df2d14SHong Zhang if (flg) { 1788f6275e2eSBarry Smith PetscReal fact = 1.39; 17894e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17900298fd71SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 1791b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1792b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17931e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1794b5df2d14SHong Zhang } 17958c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17968c07d4e3SBarry Smith 1797b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1798bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1799b5e56a35SBarry Smith #endif 1800611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1801bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1802611f576cSBarry Smith #endif 1803bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1804bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1805bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1806bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1807bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1808bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1809aa5a9175SDahai Guo 181023ce1328SBarry Smith B->symmetric = PETSC_TRUE; 181123ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 181223ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 181323ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 181426fbe8dcSKarl Rupp 181517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1816b5df2d14SHong Zhang PetscFunctionReturn(0); 1817b5df2d14SHong Zhang } 1818b5df2d14SHong Zhang 1819209238afSKris Buschelman /*MC 1820002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1821209238afSKris Buschelman 1822209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1823209238afSKris Buschelman and MATMPISBAIJ otherwise. 1824209238afSKris Buschelman 1825209238afSKris Buschelman Options Database Keys: 1826209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1827209238afSKris Buschelman 1828209238afSKris Buschelman Level: beginner 1829209238afSKris Buschelman 1830209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1831209238afSKris Buschelman M*/ 1832209238afSKris Buschelman 18334a2ae208SSatish Balay #undef __FUNCT__ 18344a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1835b5df2d14SHong Zhang /*@C 1836b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1837b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1838b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1839b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1840b5df2d14SHong Zhang 1841b5df2d14SHong Zhang Collective on Mat 1842b5df2d14SHong Zhang 1843b5df2d14SHong Zhang Input Parameters: 18441c4f3114SJed Brown + B - the matrix 1845b5df2d14SHong Zhang . bs - size of blockk 1846b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1847b5df2d14SHong Zhang submatrix (same for all local rows) 1848b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18496d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18500298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 185195742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1852b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1853b5df2d14SHong Zhang submatrix (same for all local rows). 1854b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1855c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 18560298fd71SBarry Smith (possibly different for each block row) or NULL. 1857b5df2d14SHong Zhang 1858b5df2d14SHong Zhang 1859b5df2d14SHong Zhang Options Database Keys: 1860b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1861b5df2d14SHong Zhang block calculations (much slower) 1862b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang Notes: 1865b5df2d14SHong Zhang 1866b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1867b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1868b5df2d14SHong Zhang 186949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187049a6f317SBarry Smith 1871b5df2d14SHong Zhang Storage Information: 1872b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1873b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1874b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1875b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1876b5df2d14SHong Zhang 1877b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1878b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 18790298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1880b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1881b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1882b5df2d14SHong Zhang 1883aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1884aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1885aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1886aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1887aa95bbe8SBarry Smith 1888b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1889b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1890b5df2d14SHong Zhang 1891b5df2d14SHong Zhang .vb 1892b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1893a4b1a0f6SJed Brown -------------------------- 1894c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 1895c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 1896c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 1897a4b1a0f6SJed Brown -------------------------- 1898b5df2d14SHong Zhang .ve 1899b5df2d14SHong Zhang 1900b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1901b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19026d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19036d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1904b5df2d14SHong Zhang 19056d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19066d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1907c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1908c2fc9fa9SBarry Smith 1909b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1910b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1911b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1912b5df2d14SHong Zhang matrices. 1913b5df2d14SHong Zhang 1914b5df2d14SHong Zhang Level: intermediate 1915b5df2d14SHong Zhang 1916b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1917b5df2d14SHong Zhang 1918ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 1919b5df2d14SHong Zhang @*/ 19207087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1921b5df2d14SHong Zhang { 19224ac538c5SBarry Smith PetscErrorCode ierr; 1923b5df2d14SHong Zhang 1924b5df2d14SHong Zhang PetscFunctionBegin; 19256ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19266ba663aaSJed Brown PetscValidType(B,1); 19276ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19284ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1929b5df2d14SHong Zhang PetscFunctionReturn(0); 1930b5df2d14SHong Zhang } 1931b5df2d14SHong Zhang 19324a2ae208SSatish Balay #undef __FUNCT__ 193369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 1934a30f8f8cSSatish Balay /*@C 193569b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1936a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1937a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1938a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1939a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1940a30f8f8cSSatish Balay 1941a30f8f8cSSatish Balay Collective on MPI_Comm 1942a30f8f8cSSatish Balay 1943a30f8f8cSSatish Balay Input Parameters: 1944a30f8f8cSSatish Balay + comm - MPI communicator 1945a30f8f8cSSatish Balay . bs - size of blockk 1946a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1947a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1948a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1949a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1950a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1951a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1952a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1953a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1954a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1955a30f8f8cSSatish Balay submatrix (same for all local rows) 1956a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19576d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19580298fd71SBarry Smith (possibly different for each block block row) or NULL. 195995742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 196095742e49SBarry Smith set its value even if it is zero. 1961a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1962a30f8f8cSSatish Balay submatrix (same for all local rows). 1963a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1964a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 19650298fd71SBarry Smith each block row) or NULL. 1966a30f8f8cSSatish Balay 1967a30f8f8cSSatish Balay Output Parameter: 1968a30f8f8cSSatish Balay . A - the matrix 1969a30f8f8cSSatish Balay 1970a30f8f8cSSatish Balay Options Database Keys: 1971a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1972a30f8f8cSSatish Balay block calculations (much slower) 1973a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1974a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1975a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1976a30f8f8cSSatish Balay 1977175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1978ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1979175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1980175b88e8SBarry Smith 1981a30f8f8cSSatish Balay Notes: 1982d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19836d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1984d1be2dadSMatthew Knepley 1985a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1986a30f8f8cSSatish Balay (possibly both). 1987a30f8f8cSSatish Balay 1988a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1989a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1990a30f8f8cSSatish Balay 199149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 199249a6f317SBarry Smith 1993a30f8f8cSSatish Balay Storage Information: 1994a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1995a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1996a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1997a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2000a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 20010298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2002a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2003a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2004a30f8f8cSSatish Balay 2005a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2006a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2007a30f8f8cSSatish Balay 2008a30f8f8cSSatish Balay .vb 2009a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2010a4b1a0f6SJed Brown -------------------------- 2011c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2012c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2013c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2014a4b1a0f6SJed Brown -------------------------- 2015a30f8f8cSSatish Balay .ve 2016a30f8f8cSSatish Balay 2017a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2018a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20196d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20206d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2021a30f8f8cSSatish Balay 20226d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20236d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2024a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2025a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2026a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2027a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2028a30f8f8cSSatish Balay matrices. 2029a30f8f8cSSatish Balay 2030a30f8f8cSSatish Balay Level: intermediate 2031a30f8f8cSSatish Balay 2032a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2033a30f8f8cSSatish Balay 203469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2035a30f8f8cSSatish Balay @*/ 2036a30f8f8cSSatish Balay 203769b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2038a30f8f8cSSatish Balay { 20396849ba73SBarry Smith PetscErrorCode ierr; 20401302d50aSBarry Smith PetscMPIInt size; 2041a30f8f8cSSatish Balay 2042a30f8f8cSSatish Balay PetscFunctionBegin; 2043f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2044f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2045273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2046273d9f13SBarry Smith if (size > 1) { 2047b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2048b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2049273d9f13SBarry Smith } else { 2050273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2051273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2052273d9f13SBarry Smith } 2053a30f8f8cSSatish Balay PetscFunctionReturn(0); 2054a30f8f8cSSatish Balay } 2055a30f8f8cSSatish Balay 2056a30f8f8cSSatish Balay 20574a2ae208SSatish Balay #undef __FUNCT__ 20584a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20596849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2060a30f8f8cSSatish Balay { 2061a30f8f8cSSatish Balay Mat mat; 2062a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2063dfbe8321SBarry Smith PetscErrorCode ierr; 2064d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2065387bc808SHong Zhang PetscScalar *array; 2066a30f8f8cSSatish Balay 2067a30f8f8cSSatish Balay PetscFunctionBegin; 2068a30f8f8cSSatish Balay *newmat = 0; 206926fbe8dcSKarl Rupp 2070ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2071d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20727adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20731d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 20741e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 20751e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2076e1b6402fSHong Zhang 2077d5f3da31SBarry Smith mat->factortype = matin->factortype; 2078273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 207982327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20807fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20817fff6886SHong Zhang 2082b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2083a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2084a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2085a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2086a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2087a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2088a30f8f8cSSatish Balay 2089899cda47SBarry Smith 2090a30f8f8cSSatish Balay a->size = oldmat->size; 2091a30f8f8cSSatish Balay a->rank = oldmat->rank; 2092a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2093a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2094a30f8f8cSSatish Balay a->rowindices = 0; 2095a30f8f8cSSatish Balay a->rowvalues = 0; 2096a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2097a30f8f8cSSatish Balay a->barray = 0; 2098899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2099899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2100899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2101899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2102a30f8f8cSSatish Balay 2103a30f8f8cSSatish Balay /* hash table stuff */ 2104a30f8f8cSSatish Balay a->ht = 0; 2105a30f8f8cSSatish Balay a->hd = 0; 2106a30f8f8cSSatish Balay a->ht_size = 0; 2107a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2108a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2109a30f8f8cSSatish Balay a->ht_total_ct = 0; 2110a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2111a30f8f8cSSatish Balay 2112899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2113a30f8f8cSSatish Balay if (oldmat->colmap) { 2114a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2115a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2116a30f8f8cSSatish Balay #else 2117785e854fSJed Brown ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr); 21183bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21191302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2120a30f8f8cSSatish Balay #endif 2121a30f8f8cSSatish Balay } else a->colmap = 0; 2122387bc808SHong Zhang 2123a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2124785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 21253bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21261302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2127a30f8f8cSSatish Balay } else a->garray = 0; 2128a30f8f8cSSatish Balay 2129ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2130a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 21313bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2132a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 21333bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 213482327fa8SHong Zhang 213582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 21363bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 213782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 21383bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2139387bc808SHong Zhang 2140387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21411ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2142778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2143778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21441ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21451ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2146778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21471ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 21483bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 21493bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 21503bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 21513bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 21523bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2153387bc808SHong Zhang 2154387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2155387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2156387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 21573bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 215882327fa8SHong Zhang 2159a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 21603bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 21623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2163140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2164a30f8f8cSSatish Balay *newmat = mat; 2165a30f8f8cSSatish Balay PetscFunctionReturn(0); 2166a30f8f8cSSatish Balay } 2167a30f8f8cSSatish Balay 21684a2ae208SSatish Balay #undef __FUNCT__ 21695bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2170112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 217195936485SShri Abhyankar { 217295936485SShri Abhyankar PetscErrorCode ierr; 217395936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 217495936485SShri Abhyankar PetscScalar *vals,*buf; 2175ce94432eSBarry Smith MPI_Comm comm; 217695936485SShri Abhyankar MPI_Status status; 2177adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2178adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 217995936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21803059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 218195936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 218295936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 218395936485SShri Abhyankar int fd; 218495936485SShri Abhyankar 218595936485SShri Abhyankar PetscFunctionBegin; 2186ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 21870298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21880298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 218995936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 21903059b6faSBarry Smith if (bs < 0) bs = 1; 219195936485SShri Abhyankar 219295936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 219395936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 219495936485SShri Abhyankar if (!rank) { 219595936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 219695936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 219795936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 219895936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 219995936485SShri Abhyankar } 220095936485SShri Abhyankar 220195936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 220295936485SShri Abhyankar 220395936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 220426fbe8dcSKarl Rupp M = header[1]; 220526fbe8dcSKarl Rupp N = header[2]; 220695936485SShri Abhyankar 220795936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 220895936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 220995936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 221095936485SShri Abhyankar 221195936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 221295936485SShri Abhyankar if (sizesset) { 221395936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 221495936485SShri Abhyankar } 2215abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2216abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 221795936485SShri Abhyankar 221895936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 221995936485SShri Abhyankar 222095936485SShri Abhyankar /* 222195936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 222295936485SShri Abhyankar divisible by the blocksize 222395936485SShri Abhyankar */ 222495936485SShri Abhyankar Mbs = M/bs; 222595936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 222695936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 222795936485SShri Abhyankar else Mbs++; 222895936485SShri Abhyankar if (extra_rows &&!rank) { 222995936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 223095936485SShri Abhyankar } 223195936485SShri Abhyankar 223295936485SShri Abhyankar /* determine ownership of all rows */ 223395936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 223495936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 223595936485SShri Abhyankar m = mbs*bs; 223695936485SShri Abhyankar } else { /* User Set */ 223795936485SShri Abhyankar m = newmat->rmap->n; 223895936485SShri Abhyankar mbs = m/bs; 223995936485SShri Abhyankar } 2240dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 22414dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 224295936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 224395936485SShri Abhyankar rowners[0] = 0; 224495936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 224595936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 224695936485SShri Abhyankar rstart = rowners[rank]; 224795936485SShri Abhyankar rend = rowners[rank+1]; 224895936485SShri Abhyankar 224995936485SShri Abhyankar /* distribute row lengths to all processors */ 2250785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 225195936485SShri Abhyankar if (!rank) { 2252785e854fSJed Brown ierr = PetscMalloc1((M+extra_rows),&rowlengths);CHKERRQ(ierr); 225395936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 225495936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2255785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 225695936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 225795936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 225895936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 225995936485SShri Abhyankar } else { 226095936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 226195936485SShri Abhyankar } 226295936485SShri Abhyankar 226395936485SShri Abhyankar if (!rank) { /* procs[0] */ 226495936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2265785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 226695936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 226795936485SShri Abhyankar for (i=0; i<size; i++) { 226895936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 226995936485SShri Abhyankar procsnz[i] += rowlengths[j]; 227095936485SShri Abhyankar } 227195936485SShri Abhyankar } 227295936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 227395936485SShri Abhyankar 227495936485SShri Abhyankar /* determine max buffer needed and allocate it */ 227595936485SShri Abhyankar maxnz = 0; 227695936485SShri Abhyankar for (i=0; i<size; i++) { 227795936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 227895936485SShri Abhyankar } 2279785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 228095936485SShri Abhyankar 228195936485SShri Abhyankar /* read in my part of the matrix column indices */ 228295936485SShri Abhyankar nz = procsnz[0]; 2283785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 228495936485SShri Abhyankar mycols = ibuf; 228595936485SShri Abhyankar if (size == 1) nz -= extra_rows; 228695936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 228726fbe8dcSKarl Rupp if (size == 1) { 228826fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 228926fbe8dcSKarl Rupp } 229095936485SShri Abhyankar 229195936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 229295936485SShri Abhyankar for (i=1; i<size-1; i++) { 229395936485SShri Abhyankar nz = procsnz[i]; 229495936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 229595936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 229695936485SShri Abhyankar } 229795936485SShri Abhyankar /* read in the stuff for the last proc */ 229895936485SShri Abhyankar if (size != 1) { 229995936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 230095936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 230195936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 230295936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 230395936485SShri Abhyankar } 230495936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 230595936485SShri Abhyankar } else { /* procs[i], i>0 */ 230695936485SShri Abhyankar /* determine buffer space needed for message */ 230795936485SShri Abhyankar nz = 0; 230826fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2309785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 231095936485SShri Abhyankar mycols = ibuf; 231195936485SShri Abhyankar /* receive message of column indices*/ 231295936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 231395936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 231495936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 231595936485SShri Abhyankar } 231695936485SShri Abhyankar 231795936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2318dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2319dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 232095936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232195936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232295936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232395936485SShri Abhyankar rowcount = 0; 232495936485SShri Abhyankar nzcount = 0; 232595936485SShri Abhyankar for (i=0; i<mbs; i++) { 232695936485SShri Abhyankar dcount = 0; 232795936485SShri Abhyankar odcount = 0; 232895936485SShri Abhyankar for (j=0; j<bs; j++) { 232995936485SShri Abhyankar kmax = locrowlens[rowcount]; 233095936485SShri Abhyankar for (k=0; k<kmax; k++) { 233195936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 233295936485SShri Abhyankar if (!mask[tmp]) { 233395936485SShri Abhyankar mask[tmp] = 1; 233495936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 233595936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 233695936485SShri Abhyankar } 233795936485SShri Abhyankar } 233895936485SShri Abhyankar rowcount++; 233995936485SShri Abhyankar } 234095936485SShri Abhyankar 234195936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 234295936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 234395936485SShri Abhyankar 234495936485SShri Abhyankar /* zero out the mask elements we set */ 234595936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 234695936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 234795936485SShri Abhyankar } 234895936485SShri Abhyankar if (!sizesset) { 234995936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 235095936485SShri Abhyankar } 235195936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 23526816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 235395936485SShri Abhyankar 235495936485SShri Abhyankar if (!rank) { 2355785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 235695936485SShri Abhyankar /* read in my part of the matrix numerical values */ 235795936485SShri Abhyankar nz = procsnz[0]; 235895936485SShri Abhyankar vals = buf; 235995936485SShri Abhyankar mycols = ibuf; 236095936485SShri Abhyankar if (size == 1) nz -= extra_rows; 236195936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 236226fbe8dcSKarl Rupp if (size == 1) { 236326fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 236426fbe8dcSKarl Rupp } 236595936485SShri Abhyankar 236695936485SShri Abhyankar /* insert into matrix */ 236795936485SShri Abhyankar jj = rstart*bs; 236895936485SShri Abhyankar for (i=0; i<m; i++) { 236995936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 237095936485SShri Abhyankar mycols += locrowlens[i]; 237195936485SShri Abhyankar vals += locrowlens[i]; 237295936485SShri Abhyankar jj++; 237395936485SShri Abhyankar } 237495936485SShri Abhyankar 237595936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 237695936485SShri Abhyankar for (i=1; i<size-1; i++) { 237795936485SShri Abhyankar nz = procsnz[i]; 237895936485SShri Abhyankar vals = buf; 237995936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238095936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 238195936485SShri Abhyankar } 238295936485SShri Abhyankar /* the last proc */ 238395936485SShri Abhyankar if (size != 1) { 238495936485SShri Abhyankar nz = procsnz[i] - extra_rows; 238595936485SShri Abhyankar vals = buf; 238695936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238795936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 238895936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 238995936485SShri Abhyankar } 239095936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 239195936485SShri Abhyankar 239295936485SShri Abhyankar } else { 239395936485SShri Abhyankar /* receive numeric values */ 2394785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 239595936485SShri Abhyankar 239695936485SShri Abhyankar /* receive message of values*/ 239795936485SShri Abhyankar vals = buf; 239895936485SShri Abhyankar mycols = ibuf; 239995936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 240095936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 240195936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 240295936485SShri Abhyankar 240395936485SShri Abhyankar /* insert into matrix */ 240495936485SShri Abhyankar jj = rstart*bs; 240595936485SShri Abhyankar for (i=0; i<m; i++) { 240695936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 240795936485SShri Abhyankar mycols += locrowlens[i]; 240895936485SShri Abhyankar vals += locrowlens[i]; 240995936485SShri Abhyankar jj++; 241095936485SShri Abhyankar } 241195936485SShri Abhyankar } 241295936485SShri Abhyankar 241395936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 241495936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 241595936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 241695936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 241795936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 241895936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 241995936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 242095936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 242195936485SShri Abhyankar PetscFunctionReturn(0); 242295936485SShri Abhyankar } 242395936485SShri Abhyankar 242495936485SShri Abhyankar #undef __FUNCT__ 24254a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2426dcf5cc72SBarry Smith /*XXXXX@ 2427a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2428a30f8f8cSSatish Balay 2429a30f8f8cSSatish Balay Input Parameters: 2430a30f8f8cSSatish Balay . mat - the matrix 2431a30f8f8cSSatish Balay . fact - factor 2432a30f8f8cSSatish Balay 2433c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2434a30f8f8cSSatish Balay 2435a30f8f8cSSatish Balay Level: advanced 2436a30f8f8cSSatish Balay 2437a30f8f8cSSatish Balay Notes: 2438a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2439a30f8f8cSSatish Balay 2440a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2441a30f8f8cSSatish Balay 2442a30f8f8cSSatish Balay .seealso: MatSetOption() 2443dcf5cc72SBarry Smith @XXXXX*/ 2444dcf5cc72SBarry Smith 244524d5174aSHong Zhang 24464a2ae208SSatish Balay #undef __FUNCT__ 2447985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2448985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 244924d5174aSHong Zhang { 245024d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2451f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2452ca54ac64SHong Zhang PetscReal atmp; 245387828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2454dfbe8321SBarry Smith PetscErrorCode ierr; 24551302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24561302d50aSBarry Smith PetscMPIInt rank,size; 24571302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 245887828ca2SBarry Smith PetscScalar *va; 24598a1c53f2SBarry Smith MatScalar *ba; 2460f4c0e9e4SHong Zhang MPI_Status stat; 246124d5174aSHong Zhang 246224d5174aSHong Zhang PetscFunctionBegin; 2463e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 24640298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 24651ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2466f4c0e9e4SHong Zhang 2467ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2468ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2469f4c0e9e4SHong Zhang 2470d0f46423SBarry Smith bs = A->rmap->bs; 2471f4c0e9e4SHong Zhang mbs = a->mbs; 2472f4c0e9e4SHong Zhang Mbs = a->Mbs; 2473f4c0e9e4SHong Zhang ba = b->a; 2474f4c0e9e4SHong Zhang bi = b->i; 2475f4c0e9e4SHong Zhang bj = b->j; 2476f4c0e9e4SHong Zhang 2477f4c0e9e4SHong Zhang /* find ownerships */ 2478d0f46423SBarry Smith rowners_bs = A->rmap->range; 2479f4c0e9e4SHong Zhang 2480f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2481785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2482ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2483f4c0e9e4SHong Zhang 2484f4c0e9e4SHong Zhang /* row_max for B */ 2485b8475685SHong Zhang if (rank != size-1) { 2486f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2487f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2488f4c0e9e4SHong Zhang brow = bs*i; 2489f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2490f4c0e9e4SHong Zhang bcol = bs*(*bj); 2491f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2492ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 249304d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2494f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2495f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2496ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2497ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2498f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2499f4c0e9e4SHong Zhang } 2500f4c0e9e4SHong Zhang } 2501f4c0e9e4SHong Zhang bj++; 2502f4c0e9e4SHong Zhang } 2503f4c0e9e4SHong Zhang } 2504f4c0e9e4SHong Zhang 2505f4c0e9e4SHong Zhang /* send values to its owners */ 2506f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2507f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2508ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2509ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2510ca54ac64SHong Zhang } 2511f4c0e9e4SHong Zhang } 2512f4c0e9e4SHong Zhang 2513f4c0e9e4SHong Zhang /* receive values */ 2514ca54ac64SHong Zhang if (rank) { 2515f4c0e9e4SHong Zhang rvalues = work; 2516ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2517f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2518ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2519f4c0e9e4SHong Zhang /* process values */ 2520f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2521ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2522f4c0e9e4SHong Zhang } 2523f4c0e9e4SHong Zhang } 2524ca54ac64SHong Zhang } 2525f4c0e9e4SHong Zhang 25261ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2527ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 252824d5174aSHong Zhang PetscFunctionReturn(0); 252924d5174aSHong Zhang } 25302798e883SHong Zhang 25312798e883SHong Zhang #undef __FUNCT__ 253241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 253341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25342798e883SHong Zhang { 25352798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2536dfbe8321SBarry Smith PetscErrorCode ierr; 2537d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25383649974fSBarry Smith PetscScalar *x,*ptr,*from; 2539ffe4fb16SHong Zhang Vec bb1; 25403649974fSBarry Smith const PetscScalar *b; 2541ffe4fb16SHong Zhang 2542ffe4fb16SHong Zhang PetscFunctionBegin; 2543e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2544e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2545ffe4fb16SHong Zhang 2546a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 254741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2548a2b30743SBarry Smith PetscFunctionReturn(0); 2549a2b30743SBarry Smith } 2550a2b30743SBarry Smith 2551ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2552ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 255341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2554ffe4fb16SHong Zhang its--; 2555ffe4fb16SHong Zhang } 2556ffe4fb16SHong Zhang 2557ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2558ffe4fb16SHong Zhang while (its--) { 2559ffe4fb16SHong Zhang 2560ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2561ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2562ffe4fb16SHong Zhang 2563ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25641ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25651ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2566ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25671ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2568ffe4fb16SHong Zhang 2569efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2570ffe4fb16SHong Zhang 2571ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25721ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25733649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2574ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25751ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2576ffe4fb16SHong Zhang 2577ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2578fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2579ffe4fb16SHong Zhang 2580ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25811ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2582a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2583ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2584ffe4fb16SHong Zhang 2585ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2586ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2587ffe4fb16SHong Zhang 2588ffe4fb16SHong Zhang /* local diagonal sweep */ 258941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2590ffe4fb16SHong Zhang } 25916bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2592fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 259341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2594fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 259541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2596fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2597fa22f6d0SBarry Smith Vec xx1; 2598ace3abfcSBarry Smith PetscBool hasop; 259920f1ed55SBarry Smith const PetscScalar *diag; 2600887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 260120f1ed55SBarry Smith PetscInt i,n; 2602fa22f6d0SBarry Smith 2603fa22f6d0SBarry Smith if (!mat->xx1) { 2604fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2605fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2606fa22f6d0SBarry Smith } 2607fa22f6d0SBarry Smith xx1 = mat->xx1; 2608fa22f6d0SBarry Smith bb1 = mat->bb1; 2609fa22f6d0SBarry Smith 261041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2611fa22f6d0SBarry Smith 2612fa22f6d0SBarry Smith if (!mat->diag) { 2613effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26140298fd71SBarry Smith ierr = MatGetVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2615fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2616fa22f6d0SBarry Smith } 2617fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2618fa22f6d0SBarry Smith 2619fa22f6d0SBarry Smith if (hasop) { 2620fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2621887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 262220f1ed55SBarry Smith } else { 262320f1ed55SBarry Smith /* 262420f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 262520f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2626887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 262720f1ed55SBarry Smith */ 262820f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26293649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26303649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 263120f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 263220f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2633887ee2caSBarry Smith if (omega == 1.0) { 263426fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 263520f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2636887ee2caSBarry Smith } else { 263726fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2638887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2639887ee2caSBarry Smith } 264020f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26413649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26423649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 264320f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 264420f1ed55SBarry Smith } 2645fa22f6d0SBarry Smith 2646fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2647fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2648fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2649fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2650fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2651fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2652fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2653fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2654fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2655fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2656effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2657fa22f6d0SBarry Smith 2658fa22f6d0SBarry Smith /* local sweep */ 265941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2660fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2661f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2662ffe4fb16SHong Zhang PetscFunctionReturn(0); 2663ffe4fb16SHong Zhang } 2664ffe4fb16SHong Zhang 2665ffe4fb16SHong Zhang #undef __FUNCT__ 266641f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 266741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2668ffe4fb16SHong Zhang { 2669ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2670dfbe8321SBarry Smith PetscErrorCode ierr; 26712798e883SHong Zhang Vec lvec1,bb1; 26722798e883SHong Zhang 26732798e883SHong Zhang PetscFunctionBegin; 2674e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2675e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26762798e883SHong Zhang 2677c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 26782798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 267941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26802798e883SHong Zhang its--; 26812798e883SHong Zhang } 26822798e883SHong Zhang 26832798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26842798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26852798e883SHong Zhang while (its--) { 2686ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26872798e883SHong Zhang 26882798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26892798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2690efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26912798e883SHong Zhang 2692ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26932798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2694ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26952798e883SHong Zhang 26962798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2697efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26982798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26992798e883SHong Zhang 2700ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27012798e883SHong Zhang 2702c14dc6b6SHong Zhang /* diagonal sweep */ 270341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27042798e883SHong Zhang } 27056bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27066bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27076bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27082798e883SHong Zhang PetscFunctionReturn(0); 27092798e883SHong Zhang } 27102798e883SHong Zhang 2711dfb205c3SBarry Smith #undef __FUNCT__ 2712dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2713dfb205c3SBarry Smith /*@ 2714dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2715dfb205c3SBarry Smith CSR format the local rows. 2716dfb205c3SBarry Smith 2717dfb205c3SBarry Smith Collective on MPI_Comm 2718dfb205c3SBarry Smith 2719dfb205c3SBarry Smith Input Parameters: 2720dfb205c3SBarry Smith + comm - MPI communicator 2721dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2722dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2723dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2724dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2725dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2726dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2727dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2728dfb205c3SBarry Smith . i - row indices 2729dfb205c3SBarry Smith . j - column indices 2730dfb205c3SBarry Smith - a - matrix values 2731dfb205c3SBarry Smith 2732dfb205c3SBarry Smith Output Parameter: 2733dfb205c3SBarry Smith . mat - the matrix 2734dfb205c3SBarry Smith 2735dfb205c3SBarry Smith Level: intermediate 2736dfb205c3SBarry Smith 2737dfb205c3SBarry Smith Notes: 2738dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2739dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2740dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2741dfb205c3SBarry Smith 2742dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2743dfb205c3SBarry Smith 2744dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2745dfb205c3SBarry Smith 2746dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 274769b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2748dfb205c3SBarry Smith @*/ 27497087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2750dfb205c3SBarry Smith { 2751dfb205c3SBarry Smith PetscErrorCode ierr; 2752dfb205c3SBarry Smith 2753dfb205c3SBarry Smith 2754dfb205c3SBarry Smith PetscFunctionBegin; 2755f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2756dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2757dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2758dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2759dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2760dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2761dfb205c3SBarry Smith PetscFunctionReturn(0); 2762dfb205c3SBarry Smith } 2763dfb205c3SBarry Smith 2764dfb205c3SBarry Smith 2765dfb205c3SBarry Smith #undef __FUNCT__ 2766dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2767dfb205c3SBarry Smith /*@C 2768dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2769dfb205c3SBarry Smith (the default parallel PETSc format). 2770dfb205c3SBarry Smith 2771dfb205c3SBarry Smith Collective on MPI_Comm 2772dfb205c3SBarry Smith 2773dfb205c3SBarry Smith Input Parameters: 27741c4f3114SJed Brown + B - the matrix 2775dfb205c3SBarry Smith . bs - the block size 2776dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2777dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2778dfb205c3SBarry Smith - v - optional values in the matrix 2779dfb205c3SBarry Smith 2780dfb205c3SBarry Smith Level: developer 2781dfb205c3SBarry Smith 2782dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2783dfb205c3SBarry Smith 278469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2785dfb205c3SBarry Smith @*/ 27867087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2787dfb205c3SBarry Smith { 27884ac538c5SBarry Smith PetscErrorCode ierr; 2789dfb205c3SBarry Smith 2790dfb205c3SBarry Smith PetscFunctionBegin; 27914ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2792dfb205c3SBarry Smith PetscFunctionReturn(0); 2793dfb205c3SBarry Smith } 2794dfb205c3SBarry Smith 2795dfb205c3SBarry Smith 2796