xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 4b4eb8d3b5c67aff3d3d02420f547e6671225154)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
74a2ae208SSatish Balay #undef __FUNCT__
84a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
97087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
10a30f8f8cSSatish Balay {
11f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
12dfbe8321SBarry Smith   PetscErrorCode ierr;
13a30f8f8cSSatish Balay 
14a30f8f8cSSatish Balay   PetscFunctionBegin;
15a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
16a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
17a30f8f8cSSatish Balay   PetscFunctionReturn(0);
18a30f8f8cSSatish Balay }
19a30f8f8cSSatish Balay 
204a2ae208SSatish Balay #undef __FUNCT__
214a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
227087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
23a30f8f8cSSatish Balay {
24f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
25dfbe8321SBarry Smith   PetscErrorCode ierr;
26a30f8f8cSSatish Balay 
27a30f8f8cSSatish Balay   PetscFunctionBegin;
28a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
29a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
30a30f8f8cSSatish Balay   PetscFunctionReturn(0);
31a30f8f8cSSatish Balay }
32a30f8f8cSSatish Balay 
33a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
34a30f8f8cSSatish Balay   { \
35a30f8f8cSSatish Balay  \
36a30f8f8cSSatish Balay     brow = row/bs;  \
37a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
38a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
39a30f8f8cSSatish Balay     bcol = col/bs; \
40a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
41a30f8f8cSSatish Balay     low  = 0; high = nrow; \
42a30f8f8cSSatish Balay     while (high-low > 3) { \
43a30f8f8cSSatish Balay       t = (low+high)/2; \
44a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
45a30f8f8cSSatish Balay       else              low  = t; \
46a30f8f8cSSatish Balay     } \
47a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
48a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
49a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
50a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
51a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
52a30f8f8cSSatish Balay         else                    *bap  = value;  \
53a30f8f8cSSatish Balay         goto a_noinsert; \
54a30f8f8cSSatish Balay       } \
55a30f8f8cSSatish Balay     } \
56a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
57e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
58fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
59a30f8f8cSSatish Balay     N = nrow++ - 1;  \
60a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
61a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
62a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
63a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
64a30f8f8cSSatish Balay     } \
65a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
66a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
67a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
68e56f5c9eSBarry Smith     A->nonzerostate++;\
69a30f8f8cSSatish Balay a_noinsert:; \
70a30f8f8cSSatish Balay     ailen[brow] = nrow; \
71a30f8f8cSSatish Balay   }
72e5e170daSBarry Smith 
73a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
74a30f8f8cSSatish Balay   { \
75a30f8f8cSSatish Balay     brow = row/bs;  \
76a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
77a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
78a30f8f8cSSatish Balay     bcol = col/bs; \
79a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
80a30f8f8cSSatish Balay     low  = 0; high = nrow; \
81a30f8f8cSSatish Balay     while (high-low > 3) { \
82a30f8f8cSSatish Balay       t = (low+high)/2; \
83a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
84a30f8f8cSSatish Balay       else              low  = t; \
85a30f8f8cSSatish Balay     } \
86a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
87a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
88a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
89a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
90a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
91a30f8f8cSSatish Balay         else                    *bap  = value;  \
92a30f8f8cSSatish Balay         goto b_noinsert; \
93a30f8f8cSSatish Balay       } \
94a30f8f8cSSatish Balay     } \
95a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
96e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
97fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
98a30f8f8cSSatish Balay     N = nrow++ - 1;  \
99a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
100a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
101a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
102a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
103a30f8f8cSSatish Balay     } \
104a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
105a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
106a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
107e56f5c9eSBarry Smith     B->nonzerostate++;\
108a30f8f8cSSatish Balay b_noinsert:; \
109a30f8f8cSSatish Balay     bilen[brow] = nrow; \
110a30f8f8cSSatish Balay   }
111a30f8f8cSSatish Balay 
112a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
113a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
114a30f8f8cSSatish Balay */
1154a2ae208SSatish Balay #undef __FUNCT__
116dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
117dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
118a30f8f8cSSatish Balay {
119a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
120a30f8f8cSSatish Balay   MatScalar      value;
121ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
122dfbe8321SBarry Smith   PetscErrorCode ierr;
1231302d50aSBarry Smith   PetscInt       i,j,row,col;
124d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
125d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
126d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
127a30f8f8cSSatish Balay 
128a30f8f8cSSatish Balay   /* Some Variables required in the macro */
129a30f8f8cSSatish Balay   Mat          A     = baij->A;
130a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1311302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
132a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
133a30f8f8cSSatish Balay 
134a30f8f8cSSatish Balay   Mat         B     = baij->B;
135a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1361302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
137a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
138a30f8f8cSSatish Balay 
1391302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1401302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
141a30f8f8cSSatish Balay   MatScalar *ap,*bap;
142a30f8f8cSSatish Balay 
143a30f8f8cSSatish Balay   /* for stash */
1440298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1450298fd71SBarry Smith   MatScalar *v_loc = NULL;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   PetscFunctionBegin;
148a30f8f8cSSatish Balay   if (!baij->donotstash) {
14959ffdab8SBarry Smith     if (n > baij->n_loc) {
15059ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
15159ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
152785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
153785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15426fbe8dcSKarl Rupp 
15559ffdab8SBarry Smith       baij->n_loc = n;
15659ffdab8SBarry Smith     }
15759ffdab8SBarry Smith     in_loc = baij->in_loc;
15859ffdab8SBarry Smith     v_loc  = baij->v_loc;
159a30f8f8cSSatish Balay   }
160a30f8f8cSSatish Balay 
161a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
162a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1632515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
164e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
165a30f8f8cSSatish Balay #endif
166a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
167a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
168a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
16901b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
17001b2bd88SHong Zhang           if (a->ignore_ltriangular) {
17101b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
17226fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17301b2bd88SHong Zhang         }
174a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
175a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
176a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
177a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
178db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
179db4deed7SKarl Rupp           else             value = v[i+j*m];
180a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
181a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
182a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
184cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
185a30f8f8cSSatish Balay #endif
186a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
187a30f8f8cSSatish Balay           if (mat->was_assembled) {
188a30f8f8cSSatish Balay             if (!baij->colmap) {
189ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
190a30f8f8cSSatish Balay             }
191a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
192a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19371730473SSatish Balay             col  = col - 1;
194a30f8f8cSSatish Balay #else
19571730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
196a30f8f8cSSatish Balay #endif
197a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
198ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
199a30f8f8cSSatish Balay               col  =  in[j];
200a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
201a30f8f8cSSatish Balay               B    = baij->B;
202a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
203a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
204a30f8f8cSSatish Balay               ba   = b->a;
20571730473SSatish Balay             } else col += in[j]%bs;
206a30f8f8cSSatish Balay           } else col = in[j];
207db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
208db4deed7SKarl Rupp           else             value = v[i+j*m];
209a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
210a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
211a30f8f8cSSatish Balay         }
212a30f8f8cSSatish Balay       }
213a30f8f8cSSatish Balay     } else {  /* off processor entry */
2144cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
215a30f8f8cSSatish Balay       if (!baij->donotstash) {
2165080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
217a30f8f8cSSatish Balay         n_loc          = 0;
218a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
219f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
220a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
221a30f8f8cSSatish Balay           if (roworiented) {
222a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
223a30f8f8cSSatish Balay           } else {
224a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
225a30f8f8cSSatish Balay           }
226a30f8f8cSSatish Balay           n_loc++;
227a30f8f8cSSatish Balay         }
228b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
229a30f8f8cSSatish Balay       }
230a30f8f8cSSatish Balay     }
231a30f8f8cSSatish Balay   }
232a30f8f8cSSatish Balay   PetscFunctionReturn(0);
233a30f8f8cSSatish Balay }
234a30f8f8cSSatish Balay 
2354a2ae208SSatish Balay #undef __FUNCT__
236dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
237dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
238a30f8f8cSSatish Balay {
2390880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
240f15d580aSBarry Smith   const MatScalar *value;
241f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
242ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
243dfbe8321SBarry Smith   PetscErrorCode  ierr;
244899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
245899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
246d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2470880e062SHong Zhang 
248a30f8f8cSSatish Balay   PetscFunctionBegin;
2490880e062SHong Zhang   if (!barray) {
250785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
2510880e062SHong Zhang     baij->barray = barray;
2520880e062SHong Zhang   }
2530880e062SHong Zhang 
2540880e062SHong Zhang   if (roworiented) {
2550880e062SHong Zhang     stepval = (n-1)*bs;
2560880e062SHong Zhang   } else {
2570880e062SHong Zhang     stepval = (m-1)*bs;
2580880e062SHong Zhang   }
2590880e062SHong Zhang   for (i=0; i<m; i++) {
2600880e062SHong Zhang     if (im[i] < 0) continue;
2612515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
262e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2630880e062SHong Zhang #endif
2640880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2650880e062SHong Zhang       row = im[i] - rstart;
2660880e062SHong Zhang       for (j=0; j<n; j++) {
267f3f98c53SJed Brown         if (im[i] > in[j]) {
268f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
269e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
270f3f98c53SJed Brown         }
2710880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2720880e062SHong Zhang         if ((roworiented) && (n == 1)) {
273f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2740880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
275f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2760880e062SHong Zhang         } else { /* Here a copy is required */
2770880e062SHong Zhang           if (roworiented) {
2780880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2790880e062SHong Zhang           } else {
2800880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2810880e062SHong Zhang           }
2820880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2830880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2840880e062SHong Zhang               *barray++ = *value++;
2850880e062SHong Zhang             }
2860880e062SHong Zhang           }
2870880e062SHong Zhang           barray -=bs2;
2880880e062SHong Zhang         }
2890880e062SHong Zhang 
2900880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
2910880e062SHong Zhang           col  = in[j] - cstart;
2920880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
29326fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
2942515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
295cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
2960880e062SHong Zhang #endif
2970880e062SHong Zhang         else {
2980880e062SHong Zhang           if (mat->was_assembled) {
2990880e062SHong Zhang             if (!baij->colmap) {
300ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3010880e062SHong Zhang             }
3020880e062SHong Zhang 
3032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3040880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3051302d50aSBarry Smith             { PetscInt data;
3060880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
307e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3080880e062SHong Zhang             }
3090880e062SHong Zhang #else
310e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3110880e062SHong Zhang #endif
3120880e062SHong Zhang #endif
3130880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3140880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3150880e062SHong Zhang             col  = (col - 1)/bs;
3160880e062SHong Zhang #else
3170880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3180880e062SHong Zhang #endif
3190880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
320ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3210880e062SHong Zhang               col  = in[j];
3220880e062SHong Zhang             }
32326fbe8dcSKarl Rupp           } else col = in[j];
324e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3250880e062SHong Zhang         }
3260880e062SHong Zhang       }
3270880e062SHong Zhang     } else {
3284cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3290880e062SHong Zhang       if (!baij->donotstash) {
3300880e062SHong Zhang         if (roworiented) {
3310880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3320880e062SHong Zhang         } else {
3330880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3340880e062SHong Zhang         }
3350880e062SHong Zhang       }
3360880e062SHong Zhang     }
3370880e062SHong Zhang   }
3380880e062SHong Zhang   PetscFunctionReturn(0);
339a30f8f8cSSatish Balay }
340a30f8f8cSSatish Balay 
3414a2ae208SSatish Balay #undef __FUNCT__
3424a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3431302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
344a30f8f8cSSatish Balay {
345f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3466849ba73SBarry Smith   PetscErrorCode ierr;
347d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
348d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
349a30f8f8cSSatish Balay 
350a30f8f8cSSatish Balay   PetscFunctionBegin;
351a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
352e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
353e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
354a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
355a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
356a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
357e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
358e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
359a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
360a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
361c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
362a30f8f8cSSatish Balay         } else {
363a30f8f8cSSatish Balay           if (!baij->colmap) {
364ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
365a30f8f8cSSatish Balay           }
366a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
367a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
368a30f8f8cSSatish Balay           data--;
369a30f8f8cSSatish Balay #else
370a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
371a30f8f8cSSatish Balay #endif
372a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
373a30f8f8cSSatish Balay           else {
374a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
375e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
376a30f8f8cSSatish Balay           }
377a30f8f8cSSatish Balay         }
378a30f8f8cSSatish Balay       }
379f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
380a30f8f8cSSatish Balay   }
381a30f8f8cSSatish Balay   PetscFunctionReturn(0);
382a30f8f8cSSatish Balay }
383a30f8f8cSSatish Balay 
3844a2ae208SSatish Balay #undef __FUNCT__
3854a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
386dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
387a30f8f8cSSatish Balay {
388a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
389dfbe8321SBarry Smith   PetscErrorCode ierr;
390a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
391a30f8f8cSSatish Balay 
392a30f8f8cSSatish Balay   PetscFunctionBegin;
393a30f8f8cSSatish Balay   if (baij->size == 1) {
394a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
395a30f8f8cSSatish Balay   } else {
396a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
397785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
398a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
399a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
400a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
401a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
402ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4038f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
404a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
4050b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4060b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4070b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4080b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
409899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
410d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4110b8dc8d2SHong Zhang       MatScalar    *v;
4120b8dc8d2SHong Zhang 
413dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
414d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4150b8dc8d2SHong Zhang       /* Amat */
4160b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4170b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4180b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4190b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
4200b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4210b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4220b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4230b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4240b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4250b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4260b8dc8d2SHong Zhang               /* non-diagonal block */
4270b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4280b8dc8d2SHong Zhang             }
4290b8dc8d2SHong Zhang           }
4300b8dc8d2SHong Zhang         }
4310b8dc8d2SHong Zhang       }
4320b8dc8d2SHong Zhang       /* Bmat */
4330b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4340b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4350b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4360b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4370b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4380b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4390b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4400b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4410b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4420b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4430b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4440b8dc8d2SHong Zhang             }
4450b8dc8d2SHong Zhang           }
4460b8dc8d2SHong Zhang         }
4470b8dc8d2SHong Zhang       }
448ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4490b8dc8d2SHong Zhang       *norm = 0.0;
450d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4510b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4520b8dc8d2SHong Zhang       }
45374ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
454f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
455a30f8f8cSSatish Balay   }
456a30f8f8cSSatish Balay   PetscFunctionReturn(0);
457a30f8f8cSSatish Balay }
458a30f8f8cSSatish Balay 
4594a2ae208SSatish Balay #undef __FUNCT__
4604a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
461dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
462a30f8f8cSSatish Balay {
463a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
464dfbe8321SBarry Smith   PetscErrorCode ierr;
4651302d50aSBarry Smith   PetscInt       nstash,reallocs;
466a30f8f8cSSatish Balay 
467a30f8f8cSSatish Balay   PetscFunctionBegin;
46826fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
469a30f8f8cSSatish Balay 
470d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
4711e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
472a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4731e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
474a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4751e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
476a30f8f8cSSatish Balay   PetscFunctionReturn(0);
477a30f8f8cSSatish Balay }
478a30f8f8cSSatish Balay 
4794a2ae208SSatish Balay #undef __FUNCT__
4804a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
481dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
482a30f8f8cSSatish Balay {
483a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
484a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
4856849ba73SBarry Smith   PetscErrorCode ierr;
48613f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
487e44c0bd4SBarry Smith   PetscInt       *row,*col;
488ace3abfcSBarry Smith   PetscBool      other_disassembled;
48913f74950SBarry Smith   PetscMPIInt    n;
490ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
491a30f8f8cSSatish Balay   MatScalar      *val;
492a30f8f8cSSatish Balay 
49391c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
494a30f8f8cSSatish Balay   PetscFunctionBegin;
4954cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
496a30f8f8cSSatish Balay     while (1) {
497a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
498a30f8f8cSSatish Balay       if (!flg) break;
499a30f8f8cSSatish Balay 
500a30f8f8cSSatish Balay       for (i=0; i<n;) {
501a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
50226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
50326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
50426fbe8dcSKarl Rupp         }
505a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
506a30f8f8cSSatish Balay         else       ncols = n-i;
507a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
508*4b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
509a30f8f8cSSatish Balay         i    = j;
510a30f8f8cSSatish Balay       }
511a30f8f8cSSatish Balay     }
512a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
513a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
514a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
515a30f8f8cSSatish Balay        restore the original flags */
516a30f8f8cSSatish Balay     r1 = baij->roworiented;
517a30f8f8cSSatish Balay     r2 = a->roworiented;
51891c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
51926fbe8dcSKarl Rupp 
520a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
521a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
52226fbe8dcSKarl Rupp 
52391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
524a30f8f8cSSatish Balay     while (1) {
525a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
526a30f8f8cSSatish Balay       if (!flg) break;
527a30f8f8cSSatish Balay 
528a30f8f8cSSatish Balay       for (i=0; i<n;) {
529a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
53026fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
53126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
53226fbe8dcSKarl Rupp         }
533a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
534a30f8f8cSSatish Balay         else       ncols = n-i;
535*4b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
536a30f8f8cSSatish Balay         i    = j;
537a30f8f8cSSatish Balay       }
538a30f8f8cSSatish Balay     }
539a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
54026fbe8dcSKarl Rupp 
541a30f8f8cSSatish Balay     baij->roworiented = r1;
542a30f8f8cSSatish Balay     a->roworiented    = r2;
54326fbe8dcSKarl Rupp 
54491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
545a30f8f8cSSatish Balay   }
546a30f8f8cSSatish Balay 
547a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
548a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
549a30f8f8cSSatish Balay 
550a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
551a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
552a30f8f8cSSatish Balay   /*
553a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
554a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
555a30f8f8cSSatish Balay   */
556a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
557ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
558a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
559ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
560a30f8f8cSSatish Balay     }
561a30f8f8cSSatish Balay   }
562a30f8f8cSSatish Balay 
563a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
56440781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
565a30f8f8cSSatish Balay   }
566a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
568a30f8f8cSSatish Balay 
56974ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
57026fbe8dcSKarl Rupp 
571a30f8f8cSSatish Balay   baij->rowvalues = 0;
5724f9cfa9eSBarry Smith 
5734f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
5744f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
575e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
57609e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
577e56f5c9eSBarry Smith   }
578a30f8f8cSSatish Balay   PetscFunctionReturn(0);
579a30f8f8cSSatish Balay }
580a30f8f8cSSatish Balay 
5817da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
582dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
5839804daf3SBarry Smith #include <petscdraw.h>
5844a2ae208SSatish Balay #undef __FUNCT__
5854a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
5866849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
587a30f8f8cSSatish Balay {
588a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
589dfbe8321SBarry Smith   PetscErrorCode    ierr;
590d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
5917da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
592ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
593b0a32e0cSBarry Smith   PetscViewer       sviewer;
594f3ef73ceSBarry Smith   PetscViewerFormat format;
595a30f8f8cSSatish Balay 
596a30f8f8cSSatish Balay   PetscFunctionBegin;
597251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
598251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
59932077d6dSBarry Smith   if (iascii) {
600b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
601456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
602a30f8f8cSSatish Balay       MatInfo info;
603ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
604a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6057b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6067b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
607a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
608e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
609a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
610e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
611b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6127b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
61307d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
614a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
615a30f8f8cSSatish Balay       PetscFunctionReturn(0);
616fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
61777431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
618a30f8f8cSSatish Balay       PetscFunctionReturn(0);
619c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
620c1490034SHong Zhang       PetscFunctionReturn(0);
621a30f8f8cSSatish Balay     }
622a30f8f8cSSatish Balay   }
623a30f8f8cSSatish Balay 
624a30f8f8cSSatish Balay   if (isdraw) {
625b0a32e0cSBarry Smith     PetscDraw draw;
626ace3abfcSBarry Smith     PetscBool isnull;
627b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
628b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
629a30f8f8cSSatish Balay   }
630a30f8f8cSSatish Balay 
6317da1fb6eSBarry Smith   {
632a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
633a30f8f8cSSatish Balay     Mat          A;
63465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
63565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
636d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
637a30f8f8cSSatish Balay     MatScalar    *a;
6383e219373SBarry Smith     const char   *matname;
639a30f8f8cSSatish Balay 
640f204ca49SKris Buschelman     /* Should this be the same type as mat? */
641ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
642a30f8f8cSSatish Balay     if (!rank) {
643f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
644a30f8f8cSSatish Balay     } else {
645f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
646a30f8f8cSSatish Balay     }
647f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
6480298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
6492b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
6503bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
651a30f8f8cSSatish Balay 
652a30f8f8cSSatish Balay     /* copy over the A part */
65365d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
654a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
655785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
656a30f8f8cSSatish Balay 
657a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
658e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
65926fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
660a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
661e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
662a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
663dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
66426fbe8dcSKarl Rupp           col++;
66526fbe8dcSKarl Rupp           a += bs;
666a30f8f8cSSatish Balay         }
667a30f8f8cSSatish Balay       }
668a30f8f8cSSatish Balay     }
669a30f8f8cSSatish Balay     /* copy over the B part */
67065d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
67165d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
672a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
673e9f7bc9eSHong Zhang 
674e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
67526fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
676a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
677a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
678a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
679799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
68026fbe8dcSKarl Rupp           col++;
68126fbe8dcSKarl Rupp           a += bs;
682a30f8f8cSSatish Balay         }
683a30f8f8cSSatish Balay       }
684a30f8f8cSSatish Balay     }
685a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
686a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
687a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
688a30f8f8cSSatish Balay     /*
689a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
690b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
691a30f8f8cSSatish Balay     */
692b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
693ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
6943e219373SBarry Smith     if (!rank) {
695ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
6967da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
697a30f8f8cSSatish Balay     }
698b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
6996bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
700a30f8f8cSSatish Balay   }
701a30f8f8cSSatish Balay   PetscFunctionReturn(0);
702a30f8f8cSSatish Balay }
703a30f8f8cSSatish Balay 
7044a2ae208SSatish Balay #undef __FUNCT__
7054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
706dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
707a30f8f8cSSatish Balay {
708dfbe8321SBarry Smith   PetscErrorCode ierr;
709ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
710a30f8f8cSSatish Balay 
711a30f8f8cSSatish Balay   PetscFunctionBegin;
712251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
713251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
714251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
715251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
71632077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
717a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
718a30f8f8cSSatish Balay   }
719a30f8f8cSSatish Balay   PetscFunctionReturn(0);
720a30f8f8cSSatish Balay }
721a30f8f8cSSatish Balay 
7224a2ae208SSatish Balay #undef __FUNCT__
7234a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
724dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
725a30f8f8cSSatish Balay {
726a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
727dfbe8321SBarry Smith   PetscErrorCode ierr;
728a30f8f8cSSatish Balay 
729a30f8f8cSSatish Balay   PetscFunctionBegin;
730a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
731d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
732a30f8f8cSSatish Balay #endif
733a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
734a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7356bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7366bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
737a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
7386bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
739a30f8f8cSSatish Balay #else
74005b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
741a30f8f8cSSatish Balay #endif
74205b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7436bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7446bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7456bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7466bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7476bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7486bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7496bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7506bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7515755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
75205b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
75305b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7546bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7556bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7566bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
757ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
75805b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
759a30f8f8cSSatish Balay #endif
76059ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
76159ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
762899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
763bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
764901853e0SKris Buschelman 
765dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
766bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
767bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
768bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
769bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
770bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
771a30f8f8cSSatish Balay   PetscFunctionReturn(0);
772a30f8f8cSSatish Balay }
773a30f8f8cSSatish Balay 
7744a2ae208SSatish Balay #undef __FUNCT__
775547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
776547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
777547795f9SHong Zhang {
778547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
779547795f9SHong Zhang   PetscErrorCode ierr;
780547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
781547795f9SHong Zhang   PetscScalar    *x,*from;
782547795f9SHong Zhang 
783547795f9SHong Zhang   PetscFunctionBegin;
784547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
785e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
786547795f9SHong Zhang 
787547795f9SHong Zhang   /* diagonal part */
788547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
789547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
790547795f9SHong Zhang 
791547795f9SHong Zhang   /* subdiagonal part */
792547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
793547795f9SHong Zhang 
794547795f9SHong Zhang   /* copy x into the vec slvec0 */
795547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
796547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
797547795f9SHong Zhang 
798547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
799547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
800547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
801547795f9SHong Zhang 
802547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
803547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
804547795f9SHong Zhang   /* supperdiagonal part */
805547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
806547795f9SHong Zhang   PetscFunctionReturn(0);
807547795f9SHong Zhang }
808547795f9SHong Zhang 
809547795f9SHong Zhang #undef __FUNCT__
810a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
811dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
812a9d4b620SHong Zhang {
813a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
814dfbe8321SBarry Smith   PetscErrorCode ierr;
815d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
816fa22f6d0SBarry Smith   PetscScalar    *x,*from;
817a9d4b620SHong Zhang 
818a9d4b620SHong Zhang   PetscFunctionBegin;
819a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
820e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
821a9d4b620SHong Zhang 
822a9d4b620SHong Zhang   /* diagonal part */
823a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
824fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
825a9d4b620SHong Zhang 
826a9d4b620SHong Zhang   /* subdiagonal part */
827a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
828fc165ae2SBarry Smith 
829a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8301ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8311ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
832a9d4b620SHong Zhang 
833fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
834fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8351ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
836fc165ae2SBarry Smith 
837fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
838ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
839a9d4b620SHong Zhang   /* supperdiagonal part */
840a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
841a9d4b620SHong Zhang   PetscFunctionReturn(0);
842a9d4b620SHong Zhang }
843a9d4b620SHong Zhang 
844a9d4b620SHong Zhang #undef __FUNCT__
84540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
846dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
847a30f8f8cSSatish Balay {
848a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
849dfbe8321SBarry Smith   PetscErrorCode ierr;
8501302d50aSBarry Smith   PetscInt       nt;
851a30f8f8cSSatish Balay 
852a30f8f8cSSatish Balay   PetscFunctionBegin;
853a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
854e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
855e7e72b3dSBarry Smith 
856a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
857e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
85865d70643SHong Zhang 
859ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
860b941877fSHong Zhang   /* do diagonal part */
861b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
862b941877fSHong Zhang   /* do supperdiagonal part */
863ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
864b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
865b941877fSHong Zhang   /* do subdiagonal part */
866b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
867ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
868ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
869a30f8f8cSSatish Balay   PetscFunctionReturn(0);
870a30f8f8cSSatish Balay }
871a30f8f8cSSatish Balay 
8724a2ae208SSatish Balay #undef __FUNCT__
8734a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
874dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
875a30f8f8cSSatish Balay {
876de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
877dfbe8321SBarry Smith   PetscErrorCode ierr;
878d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
879a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
880a9d4b620SHong Zhang 
881a9d4b620SHong Zhang   PetscFunctionBegin;
882a9d4b620SHong Zhang   /*
883ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
8840ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
885a9d4b620SHong Zhang   */
886a9d4b620SHong Zhang   /* diagonal part */
887a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
8882dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
889a9d4b620SHong Zhang 
890a9d4b620SHong Zhang   /* subdiagonal part */
891a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
892a9d4b620SHong Zhang 
893a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8941ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8951ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
896a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
8971ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
898a9d4b620SHong Zhang 
899ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9001ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
901ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
902a9d4b620SHong Zhang 
903a9d4b620SHong Zhang   /* supperdiagonal part */
904a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
905a9d4b620SHong Zhang   PetscFunctionReturn(0);
906a9d4b620SHong Zhang }
907a9d4b620SHong Zhang 
908a9d4b620SHong Zhang #undef __FUNCT__
909a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
910dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
911a9d4b620SHong Zhang {
912a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
913dfbe8321SBarry Smith   PetscErrorCode ierr;
914a30f8f8cSSatish Balay 
915a30f8f8cSSatish Balay   PetscFunctionBegin;
916ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
917b941877fSHong Zhang   /* do diagonal part */
918b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
919b941877fSHong Zhang   /* do supperdiagonal part */
920ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
921de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
922de8b6608SHong Zhang 
923b941877fSHong Zhang   /* do subdiagonal part */
924a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
925ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
926ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
927a30f8f8cSSatish Balay   PetscFunctionReturn(0);
928a30f8f8cSSatish Balay }
929a30f8f8cSSatish Balay 
930a30f8f8cSSatish Balay /*
931a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
932a30f8f8cSSatish Balay    diagonal block
933a30f8f8cSSatish Balay */
9344a2ae208SSatish Balay #undef __FUNCT__
9354a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
936dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
937a30f8f8cSSatish Balay {
938a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
939dfbe8321SBarry Smith   PetscErrorCode ierr;
940a30f8f8cSSatish Balay 
941a30f8f8cSSatish Balay   PetscFunctionBegin;
942e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
943a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
944a30f8f8cSSatish Balay   PetscFunctionReturn(0);
945a30f8f8cSSatish Balay }
946a30f8f8cSSatish Balay 
9474a2ae208SSatish Balay #undef __FUNCT__
9484a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
949f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
950a30f8f8cSSatish Balay {
951a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
952dfbe8321SBarry Smith   PetscErrorCode ierr;
953a30f8f8cSSatish Balay 
954a30f8f8cSSatish Balay   PetscFunctionBegin;
955f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
956f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
957a30f8f8cSSatish Balay   PetscFunctionReturn(0);
958a30f8f8cSSatish Balay }
959a30f8f8cSSatish Balay 
9604a2ae208SSatish Balay #undef __FUNCT__
9614a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9621302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
963a30f8f8cSSatish Balay {
964d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
965d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
966d0d4cfc2SHong Zhang   PetscErrorCode ierr;
967d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
968d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
969899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
970d0d4cfc2SHong Zhang 
971a30f8f8cSSatish Balay   PetscFunctionBegin;
972e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
973d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
974d0d4cfc2SHong Zhang 
975d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
976d0d4cfc2SHong Zhang     /*
977d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
978d0d4cfc2SHong Zhang     */
979d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
980d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
981d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
982d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
983d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
98426fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
985d0d4cfc2SHong Zhang     }
986dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
987d0d4cfc2SHong Zhang   }
988d0d4cfc2SHong Zhang 
989e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
990d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
991d0d4cfc2SHong Zhang 
992d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
993d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
994d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
995d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
996d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
997d0d4cfc2SHong Zhang   nztot = nzA + nzB;
998d0d4cfc2SHong Zhang 
999d0d4cfc2SHong Zhang   cmap = mat->garray;
1000d0d4cfc2SHong Zhang   if (v  || idx) {
1001d0d4cfc2SHong Zhang     if (nztot) {
1002d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1003d0d4cfc2SHong Zhang       PetscInt imark = -1;
1004d0d4cfc2SHong Zhang       if (v) {
1005d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1006d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1007d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1008d0d4cfc2SHong Zhang           else break;
1009d0d4cfc2SHong Zhang         }
1010d0d4cfc2SHong Zhang         imark = i;
1011d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1012d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1013d0d4cfc2SHong Zhang       }
1014d0d4cfc2SHong Zhang       if (idx) {
1015d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1016d0d4cfc2SHong Zhang         if (imark > -1) {
1017d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1018d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1019d0d4cfc2SHong Zhang           }
1020d0d4cfc2SHong Zhang         } else {
1021d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
102226fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1023d0d4cfc2SHong Zhang             else break;
1024d0d4cfc2SHong Zhang           }
1025d0d4cfc2SHong Zhang           imark = i;
1026d0d4cfc2SHong Zhang         }
1027d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1028d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1029d0d4cfc2SHong Zhang       }
1030d0d4cfc2SHong Zhang     } else {
1031d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1032d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1033d0d4cfc2SHong Zhang     }
1034d0d4cfc2SHong Zhang   }
1035d0d4cfc2SHong Zhang   *nz  = nztot;
1036d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1037d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1038a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1039a30f8f8cSSatish Balay }
1040a30f8f8cSSatish Balay 
10414a2ae208SSatish Balay #undef __FUNCT__
10424a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10431302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1044a30f8f8cSSatish Balay {
1045a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1046a30f8f8cSSatish Balay 
1047a30f8f8cSSatish Balay   PetscFunctionBegin;
1048e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1049a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1050a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1051a30f8f8cSSatish Balay }
1052a30f8f8cSSatish Balay 
10534a2ae208SSatish Balay #undef __FUNCT__
1054d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1055d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1056d0d4cfc2SHong Zhang {
1057d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1058d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1059d0d4cfc2SHong Zhang 
1060d0d4cfc2SHong Zhang   PetscFunctionBegin;
1061d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1062d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1063d0d4cfc2SHong Zhang }
1064d0d4cfc2SHong Zhang #undef __FUNCT__
1065d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1066d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1067d0d4cfc2SHong Zhang {
1068d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1069d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1070d0d4cfc2SHong Zhang 
1071d0d4cfc2SHong Zhang   PetscFunctionBegin;
1072d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1073d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1074d0d4cfc2SHong Zhang }
1075d0d4cfc2SHong Zhang 
1076d0d4cfc2SHong Zhang #undef __FUNCT__
107799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
107899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
107999cafbc1SBarry Smith {
108099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
108199cafbc1SBarry Smith   PetscErrorCode ierr;
108299cafbc1SBarry Smith 
108399cafbc1SBarry Smith   PetscFunctionBegin;
108499cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
108599cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
108699cafbc1SBarry Smith   PetscFunctionReturn(0);
108799cafbc1SBarry Smith }
108899cafbc1SBarry Smith 
108999cafbc1SBarry Smith #undef __FUNCT__
109099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
109199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
109299cafbc1SBarry Smith {
109399cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
109499cafbc1SBarry Smith   PetscErrorCode ierr;
109599cafbc1SBarry Smith 
109699cafbc1SBarry Smith   PetscFunctionBegin;
109799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
109899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
109999cafbc1SBarry Smith   PetscFunctionReturn(0);
110099cafbc1SBarry Smith }
110199cafbc1SBarry Smith 
110299cafbc1SBarry Smith #undef __FUNCT__
11034a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1104dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1105a30f8f8cSSatish Balay {
1106a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1107dfbe8321SBarry Smith   PetscErrorCode ierr;
1108a30f8f8cSSatish Balay 
1109a30f8f8cSSatish Balay   PetscFunctionBegin;
1110a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1111a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1112a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1113a30f8f8cSSatish Balay }
1114a30f8f8cSSatish Balay 
11154a2ae208SSatish Balay #undef __FUNCT__
11164a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1117dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1118a30f8f8cSSatish Balay {
1119a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1120a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1121dfbe8321SBarry Smith   PetscErrorCode ierr;
1122a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1123a30f8f8cSSatish Balay 
1124a30f8f8cSSatish Balay   PetscFunctionBegin;
1125d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
112626fbe8dcSKarl Rupp 
1127a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
112826fbe8dcSKarl Rupp 
1129a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1130a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
113126fbe8dcSKarl Rupp 
1132a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
113326fbe8dcSKarl Rupp 
1134a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1135a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1136a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1137a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1138a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1139a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1140a30f8f8cSSatish Balay     info->memory       = isend[3];
1141a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1142a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1143ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
114426fbe8dcSKarl Rupp 
1145a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1146a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1147a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1148a30f8f8cSSatish Balay     info->memory       = irecv[3];
1149a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1150a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1151ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
115226fbe8dcSKarl Rupp 
1153a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1154a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1155a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1156a30f8f8cSSatish Balay     info->memory       = irecv[3];
1157a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1158f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1159a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1160a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1161a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1162a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1163a30f8f8cSSatish Balay }
1164a30f8f8cSSatish Balay 
11654a2ae208SSatish Balay #undef __FUNCT__
11664a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1167ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1168a30f8f8cSSatish Balay {
1169a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1170d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1171dfbe8321SBarry Smith   PetscErrorCode ierr;
1172a30f8f8cSSatish Balay 
1173a30f8f8cSSatish Balay   PetscFunctionBegin;
1174e98b92d7SKris Buschelman   switch (op) {
1175512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1176e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
117728b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1178a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1179e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
11804e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
11814e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1182e98b92d7SKris Buschelman     break;
1183e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
11844e0d8c25SBarry Smith     a->roworiented = flg;
118526fbe8dcSKarl Rupp 
11864e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
11874e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1188e98b92d7SKris Buschelman     break;
11894e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1190290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1191e98b92d7SKris Buschelman     break;
1192e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
11934e0d8c25SBarry Smith     a->donotstash = flg;
1194e98b92d7SKris Buschelman     break;
1195e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
11964e0d8c25SBarry Smith     a->ht_flag = flg;
1197e98b92d7SKris Buschelman     break;
11989a4540c5SBarry Smith   case MAT_HERMITIAN:
1199e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1200eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
120126fbe8dcSKarl Rupp 
1202547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1203eeffb40dSHong Zhang     break;
1204ffa07934SHong Zhang   case MAT_SPD:
1205ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1206ffa07934SHong Zhang     A->spd     = flg;
1207ffa07934SHong Zhang     if (flg) {
1208ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1209ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1210ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1211ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1212ffa07934SHong Zhang     }
1213ffa07934SHong Zhang     break;
121477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1215eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1216eeffb40dSHong Zhang     break;
121777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1218eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1219eeffb40dSHong Zhang     break;
12209a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1221e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1222290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
122377e54ba9SKris Buschelman     break;
1224d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12254e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1226d0d4cfc2SHong Zhang     break;
1227d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12284e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1229d0d4cfc2SHong Zhang     break;
1230d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12314e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1232d0d4cfc2SHong Zhang     break;
1233e98b92d7SKris Buschelman   default:
1234e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1235a30f8f8cSSatish Balay   }
1236a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1237a30f8f8cSSatish Balay }
1238a30f8f8cSSatish Balay 
12394a2ae208SSatish Balay #undef __FUNCT__
12408115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1241fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1242a30f8f8cSSatish Balay {
1243dfbe8321SBarry Smith   PetscErrorCode ierr;
12446e111a19SKarl Rupp 
1245a30f8f8cSSatish Balay   PetscFunctionBegin;
1246815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1247999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1248fc4dec0aSBarry Smith   }
12498115998fSBarry Smith   PetscFunctionReturn(0);
1250a30f8f8cSSatish Balay }
1251a30f8f8cSSatish Balay 
12524a2ae208SSatish Balay #undef __FUNCT__
12534a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1254dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1255a30f8f8cSSatish Balay {
1256a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1257a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1258dfbe8321SBarry Smith   PetscErrorCode ierr;
12595e90f9d9SHong Zhang   PetscInt       nv,m,n;
1260ace3abfcSBarry Smith   PetscBool      flg;
1261a30f8f8cSSatish Balay 
1262a30f8f8cSSatish Balay   PetscFunctionBegin;
1263a30f8f8cSSatish Balay   if (ll != rr) {
1264b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1265e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1266a30f8f8cSSatish Balay   }
1267b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1268b3bf805bSHong Zhang 
12695e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1270e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1271b3bf805bSHong Zhang 
12725e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1273e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12745e90f9d9SHong Zhang 
1275ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12765e90f9d9SHong Zhang 
12775e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
12780298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
12795e90f9d9SHong Zhang 
12805e90f9d9SHong Zhang   /* scale the diagonal part */
1281a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1282a30f8f8cSSatish Balay 
12835e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1284ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12850298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1286a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1287a30f8f8cSSatish Balay }
1288a30f8f8cSSatish Balay 
12894a2ae208SSatish Balay #undef __FUNCT__
12904a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1291dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1292a30f8f8cSSatish Balay {
1293f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1294dfbe8321SBarry Smith   PetscErrorCode ierr;
1295a30f8f8cSSatish Balay 
1296a30f8f8cSSatish Balay   PetscFunctionBegin;
1297a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1298a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1299a30f8f8cSSatish Balay }
1300a30f8f8cSSatish Balay 
13016849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1302a30f8f8cSSatish Balay 
13034a2ae208SSatish Balay #undef __FUNCT__
13044a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1305ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1306a30f8f8cSSatish Balay {
1307a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1308a30f8f8cSSatish Balay   Mat            a,b,c,d;
1309ace3abfcSBarry Smith   PetscBool      flg;
1310dfbe8321SBarry Smith   PetscErrorCode ierr;
1311a30f8f8cSSatish Balay 
1312a30f8f8cSSatish Balay   PetscFunctionBegin;
1313a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1314a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1315a30f8f8cSSatish Balay 
1316a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1317abc0a331SBarry Smith   if (flg) {
1318a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1319a30f8f8cSSatish Balay   }
1320ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1321a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1322a30f8f8cSSatish Balay }
1323a30f8f8cSSatish Balay 
13244a2ae208SSatish Balay #undef __FUNCT__
13253c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13263c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13273c896bc6SHong Zhang {
13283c896bc6SHong Zhang   PetscErrorCode ierr;
13293c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
13303c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
13313c896bc6SHong Zhang 
13323c896bc6SHong Zhang   PetscFunctionBegin;
13333c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13343c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1335d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13363c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1337d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13383c896bc6SHong Zhang   } else {
13393c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13403c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13413c896bc6SHong Zhang   }
13423c896bc6SHong Zhang   PetscFunctionReturn(0);
13433c896bc6SHong Zhang }
13443c896bc6SHong Zhang 
13453c896bc6SHong Zhang #undef __FUNCT__
13464994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
13474994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1348273d9f13SBarry Smith {
1349dfbe8321SBarry Smith   PetscErrorCode ierr;
1350273d9f13SBarry Smith 
1351273d9f13SBarry Smith   PetscFunctionBegin;
1352535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1353273d9f13SBarry Smith   PetscFunctionReturn(0);
1354273d9f13SBarry Smith }
1355a5e6ed63SBarry Smith 
13564fe895cdSHong Zhang #undef __FUNCT__
13574fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13584fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13594fe895cdSHong Zhang {
13604fe895cdSHong Zhang   PetscErrorCode ierr;
13614fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
13624fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13634fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13644fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13654fe895cdSHong Zhang 
13664fe895cdSHong Zhang   PetscFunctionBegin;
13674fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13684fe895cdSHong Zhang     PetscScalar alpha = a;
13694fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
13704fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1371c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
13728b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
13734fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
13744fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1375c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
13768b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1377a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
13784fe895cdSHong Zhang   } else {
13794de5dceeSHong Zhang     Mat      B;
13804de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
13814de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1382d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13834de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
13844de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
13854de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
13864de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
13874de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
13884de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
13894de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
13904de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
13914de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
13924de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
13934de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
13944de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
13954de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
13964de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
13974de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1398d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
13994de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
14004fe895cdSHong Zhang   }
14014fe895cdSHong Zhang   PetscFunctionReturn(0);
14024fe895cdSHong Zhang }
14034fe895cdSHong Zhang 
1404a5e6ed63SBarry Smith #undef __FUNCT__
1405a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14061302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1407a5e6ed63SBarry Smith {
14086849ba73SBarry Smith   PetscErrorCode ierr;
14091302d50aSBarry Smith   PetscInt       i;
1410ace3abfcSBarry Smith   PetscBool      flg;
1411a5e6ed63SBarry Smith 
14126849ba73SBarry Smith   PetscFunctionBegin;
1413a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1414a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1415e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1416a5e6ed63SBarry Smith   }
1417a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1418a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1419a5e6ed63SBarry Smith }
1420a5e6ed63SBarry Smith 
1421a5e6ed63SBarry Smith 
1422a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
14233964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1424a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1425a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1426a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
142797304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1428431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1429431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1430a30f8f8cSSatish Balay                                        0,
1431a30f8f8cSSatish Balay                                        0,
1432a30f8f8cSSatish Balay                                        0,
143397304618SKris Buschelman                                /* 10*/ 0,
1434a30f8f8cSSatish Balay                                        0,
1435a30f8f8cSSatish Balay                                        0,
143641f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1437a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
143897304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1439a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1440a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1441a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1442a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
144397304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1444a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1445a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1446a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1447d519adbfSMatthew Knepley                                /* 24*/ 0,
1448a30f8f8cSSatish Balay                                        0,
1449a30f8f8cSSatish Balay                                        0,
1450a30f8f8cSSatish Balay                                        0,
1451a30f8f8cSSatish Balay                                        0,
14524994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1453b5df2d14SHong Zhang                                        0,
1454a30f8f8cSSatish Balay                                        0,
1455a30f8f8cSSatish Balay                                        0,
1456a30f8f8cSSatish Balay                                        0,
1457d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1458a30f8f8cSSatish Balay                                        0,
1459a30f8f8cSSatish Balay                                        0,
1460a30f8f8cSSatish Balay                                        0,
1461a30f8f8cSSatish Balay                                        0,
1462d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1463a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1464d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1465a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
14663c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1467d519adbfSMatthew Knepley                                /* 44*/ 0,
1468a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1469a30f8f8cSSatish Balay                                        0,
1470a30f8f8cSSatish Balay                                        0,
1471a30f8f8cSSatish Balay                                        0,
1472f73d5cc4SBarry Smith                                /* 49*/ 0,
1473a30f8f8cSSatish Balay                                        0,
1474a30f8f8cSSatish Balay                                        0,
1475a30f8f8cSSatish Balay                                        0,
1476a30f8f8cSSatish Balay                                        0,
1477d519adbfSMatthew Knepley                                /* 54*/ 0,
1478a30f8f8cSSatish Balay                                        0,
1479a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1480a30f8f8cSSatish Balay                                        0,
1481a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
1482d519adbfSMatthew Knepley                                /* 59*/ 0,
1483a30f8f8cSSatish Balay                                        0,
1484a30f8f8cSSatish Balay                                        0,
1485357abbc8SBarry Smith                                        0,
148624d5174aSHong Zhang                                        0,
1487d519adbfSMatthew Knepley                                /* 64*/ 0,
148824d5174aSHong Zhang                                        0,
148924d5174aSHong Zhang                                        0,
149024d5174aSHong Zhang                                        0,
149124d5174aSHong Zhang                                        0,
1492d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
149324d5174aSHong Zhang                                        0,
149497304618SKris Buschelman                                        0,
149597304618SKris Buschelman                                        0,
149697304618SKris Buschelman                                        0,
1497d519adbfSMatthew Knepley                                /* 74*/ 0,
149897304618SKris Buschelman                                        0,
149997304618SKris Buschelman                                        0,
150097304618SKris Buschelman                                        0,
150197304618SKris Buschelman                                        0,
1502d519adbfSMatthew Knepley                                /* 79*/ 0,
150397304618SKris Buschelman                                        0,
150497304618SKris Buschelman                                        0,
150597304618SKris Buschelman                                        0,
15065bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1507d519adbfSMatthew Knepley                                /* 84*/ 0,
1508865e5f61SKris Buschelman                                        0,
1509865e5f61SKris Buschelman                                        0,
1510865e5f61SKris Buschelman                                        0,
1511865e5f61SKris Buschelman                                        0,
1512d519adbfSMatthew Knepley                                /* 89*/ 0,
1513865e5f61SKris Buschelman                                        0,
1514865e5f61SKris Buschelman                                        0,
1515865e5f61SKris Buschelman                                        0,
1516865e5f61SKris Buschelman                                        0,
1517d519adbfSMatthew Knepley                                /* 94*/ 0,
1518865e5f61SKris Buschelman                                        0,
1519865e5f61SKris Buschelman                                        0,
152099cafbc1SBarry Smith                                        0,
152199cafbc1SBarry Smith                                        0,
1522d519adbfSMatthew Knepley                                /* 99*/ 0,
152399cafbc1SBarry Smith                                        0,
152499cafbc1SBarry Smith                                        0,
152599cafbc1SBarry Smith                                        0,
152699cafbc1SBarry Smith                                        0,
1527d519adbfSMatthew Knepley                                /*104*/ 0,
152899cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1529d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1530d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
153195936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
153295936485SShri Abhyankar                                /*109*/ 0,
153395936485SShri Abhyankar                                        0,
153495936485SShri Abhyankar                                        0,
153595936485SShri Abhyankar                                        0,
153695936485SShri Abhyankar                                        0,
153795936485SShri Abhyankar                                /*114*/ 0,
153895936485SShri Abhyankar                                        0,
153995936485SShri Abhyankar                                        0,
154095936485SShri Abhyankar                                        0,
154195936485SShri Abhyankar                                        0,
154295936485SShri Abhyankar                                /*119*/ 0,
154395936485SShri Abhyankar                                        0,
154495936485SShri Abhyankar                                        0,
15453964eb88SJed Brown                                        0,
15463964eb88SJed Brown                                        0,
15473964eb88SJed Brown                                /*124*/ 0,
15483964eb88SJed Brown                                        0,
15493964eb88SJed Brown                                        0,
15503964eb88SJed Brown                                        0,
15513964eb88SJed Brown                                        0,
15523964eb88SJed Brown                                /*129*/ 0,
15533964eb88SJed Brown                                        0,
15543964eb88SJed Brown                                        0,
15553964eb88SJed Brown                                        0,
15563964eb88SJed Brown                                        0,
15573964eb88SJed Brown                                /*134*/ 0,
15583964eb88SJed Brown                                        0,
15593964eb88SJed Brown                                        0,
15603964eb88SJed Brown                                        0,
15613964eb88SJed Brown                                        0,
15623964eb88SJed Brown                                /*139*/ 0,
1563f9426fe0SMark Adams                                        0,
15645bba2384SShri Abhyankar                                        0
156599cafbc1SBarry Smith };
1566a30f8f8cSSatish Balay 
1567a30f8f8cSSatish Balay 
15684a2ae208SSatish Balay #undef __FUNCT__
15694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
157011bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1571a30f8f8cSSatish Balay {
1572a30f8f8cSSatish Balay   PetscFunctionBegin;
1573a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1574a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1575a30f8f8cSSatish Balay }
1576a30f8f8cSSatish Balay 
15774a2ae208SSatish Balay #undef __FUNCT__
1578a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1579b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1580a23d5eceSKris Buschelman {
1581a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1582dfbe8321SBarry Smith   PetscErrorCode ierr;
1583535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1584a23d5eceSKris Buschelman 
1585a23d5eceSKris Buschelman   PetscFunctionBegin;
158633d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
158726283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
158826283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1589e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1590899cda47SBarry Smith 
1591a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1592d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1593d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1594c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1595a23d5eceSKris Buschelman 
1596d0f46423SBarry Smith   B->rmap->bs = bs;
1597a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1598a23d5eceSKris Buschelman   b->mbs      = mbs;
1599a23d5eceSKris Buschelman   b->nbs      = mbs;
1600a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1601a23d5eceSKris Buschelman   b->Nbs      = Mbs;
1602a23d5eceSKris Buschelman 
1603a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1604d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1605a23d5eceSKris Buschelman   }
1606d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1607d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1608a23d5eceSKris Buschelman 
1609d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1610d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1611a23d5eceSKris Buschelman 
1612526dfc15SBarry Smith   if (!B->preallocated) {
1613f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1614d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16159c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
16163bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1617f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1618d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16194aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
16203bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1621ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1622526dfc15SBarry Smith   }
1623a23d5eceSKris Buschelman 
1624526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1625526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
162626fbe8dcSKarl Rupp 
1627526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1628a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1629a23d5eceSKris Buschelman }
1630a23d5eceSKris Buschelman 
1631dfb205c3SBarry Smith #undef __FUNCT__
1632dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1633dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1634dfb205c3SBarry Smith {
1635dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1636dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1637dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1638dfb205c3SBarry Smith   PetscScalar    *values=0;
1639dfb205c3SBarry Smith   PetscErrorCode ierr;
1640dfb205c3SBarry Smith 
1641dfb205c3SBarry Smith   PetscFunctionBegin;
1642ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1643dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1644dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1645dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1646dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1647e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1648dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1649dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1650dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1651dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1652dfb205c3SBarry Smith 
1653dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1654dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1655dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1656dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1657dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1658dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1659dfb205c3SBarry Smith     JJ     = jj + ii[i];
1660dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1661dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1662dfb205c3SBarry Smith       JJ++;
1663dfb205c3SBarry Smith     }
1664dfb205c3SBarry Smith     d = 0;
1665dfb205c3SBarry Smith     for (; j<nz; j++) {
1666dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1667dfb205c3SBarry Smith       d++;
1668dfb205c3SBarry Smith     }
1669dfb205c3SBarry Smith     d_nnz[i] = d;
1670dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1671dfb205c3SBarry Smith   }
1672dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1673dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1674dfb205c3SBarry Smith 
1675dfb205c3SBarry Smith   values = (PetscScalar*)V;
1676dfb205c3SBarry Smith   if (!values) {
1677785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
1678dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1679dfb205c3SBarry Smith   }
1680dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1681dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1682dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1683dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1684dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1685dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1686dfb205c3SBarry Smith   }
1687dfb205c3SBarry Smith 
1688dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1689dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1690dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16917827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1692dfb205c3SBarry Smith   PetscFunctionReturn(0);
1693dfb205c3SBarry Smith }
1694dfb205c3SBarry Smith 
1695611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
16968cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1697611f576cSBarry Smith #endif
1698b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
16998cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1700b5e56a35SBarry Smith #endif
17015c9eb25fSBarry Smith 
17020bad9183SKris Buschelman /*MC
1703fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1704828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1705828413b8SBarry Smith    the matrix is stored.
1706828413b8SBarry Smith 
1707828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1708828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17090bad9183SKris Buschelman 
17100bad9183SKris Buschelman    Options Database Keys:
17110bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17120bad9183SKris Buschelman 
17130bad9183SKris Buschelman   Level: beginner
17140bad9183SKris Buschelman 
17150bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17160bad9183SKris Buschelman M*/
17170bad9183SKris Buschelman 
17188cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1719aa5a9175SDahai Guo 
1720a23d5eceSKris Buschelman #undef __FUNCT__
17214a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17228cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1723b5df2d14SHong Zhang {
1724b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1725dfbe8321SBarry Smith   PetscErrorCode ierr;
1726ace3abfcSBarry Smith   PetscBool      flg;
1727b5df2d14SHong Zhang 
1728b5df2d14SHong Zhang   PetscFunctionBegin;
1729b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
1730b0a32e0cSBarry Smith   B->data = (void*)b;
1731b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1732b5df2d14SHong Zhang 
1733b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
1734b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
1735b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
1736b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
173726fbe8dcSKarl Rupp 
1738ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
1739ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
1740b5df2d14SHong Zhang 
1741b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1742785e854fSJed Brown   ierr = PetscMalloc1((b->size+2),&b->rangebs);CHKERRQ(ierr);
1743b5df2d14SHong Zhang 
1744b5df2d14SHong Zhang   /* build cache for off array entries formed */
1745ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
174626fbe8dcSKarl Rupp 
1747b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
17480298fd71SBarry Smith   b->colmap      = NULL;
17490298fd71SBarry Smith   b->garray      = NULL;
1750b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1751b5df2d14SHong Zhang 
1752b5df2d14SHong Zhang   /* stuff used in block assembly */
1753b5df2d14SHong Zhang   b->barray = 0;
1754b5df2d14SHong Zhang 
1755b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1756b5df2d14SHong Zhang   b->lvec    = 0;
1757b5df2d14SHong Zhang   b->Mvctx   = 0;
175840781036SHong Zhang   b->slvec0  = 0;
175940781036SHong Zhang   b->slvec0b = 0;
176040781036SHong Zhang   b->slvec1  = 0;
176140781036SHong Zhang   b->slvec1a = 0;
176240781036SHong Zhang   b->slvec1b = 0;
176340781036SHong Zhang   b->sMvctx  = 0;
1764b5df2d14SHong Zhang 
1765b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1766b5df2d14SHong Zhang   b->rowindices   = 0;
1767b5df2d14SHong Zhang   b->rowvalues    = 0;
1768b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1769b5df2d14SHong Zhang 
1770b5df2d14SHong Zhang   /* hash table stuff */
1771b5df2d14SHong Zhang   b->ht           = 0;
1772b5df2d14SHong Zhang   b->hd           = 0;
1773b5df2d14SHong Zhang   b->ht_size      = 0;
1774b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1775b5df2d14SHong Zhang   b->ht_fact      = 0;
1776b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1777b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1778b5df2d14SHong Zhang 
17797a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
17807a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
17817a868f3eSHong Zhang 
178259ffdab8SBarry Smith   b->in_loc = 0;
178359ffdab8SBarry Smith   b->v_loc  = 0;
178459ffdab8SBarry Smith   b->n_loc  = 0;
1785ce94432eSBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17860298fd71SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr);
1787b5df2d14SHong Zhang   if (flg) {
1788f6275e2eSBarry Smith     PetscReal fact = 1.39;
17894e0d8c25SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17900298fd71SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
1791b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1792b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17931e2582c4SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1794b5df2d14SHong Zhang   }
17958c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17968c07d4e3SBarry Smith 
1797b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1798bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1799b5e56a35SBarry Smith #endif
1800611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1801bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1802611f576cSBarry Smith #endif
1803bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1804bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1805bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1806bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1807bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1808bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
1809aa5a9175SDahai Guo 
181023ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
181123ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
181223ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
181323ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
181426fbe8dcSKarl Rupp 
181517667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1816b5df2d14SHong Zhang   PetscFunctionReturn(0);
1817b5df2d14SHong Zhang }
1818b5df2d14SHong Zhang 
1819209238afSKris Buschelman /*MC
1820002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1821209238afSKris Buschelman 
1822209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1823209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1824209238afSKris Buschelman 
1825209238afSKris Buschelman    Options Database Keys:
1826209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1827209238afSKris Buschelman 
1828209238afSKris Buschelman   Level: beginner
1829209238afSKris Buschelman 
1830209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1831209238afSKris Buschelman M*/
1832209238afSKris Buschelman 
18334a2ae208SSatish Balay #undef __FUNCT__
18344a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1835b5df2d14SHong Zhang /*@C
1836b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1837b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1838b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1839b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1840b5df2d14SHong Zhang 
1841b5df2d14SHong Zhang    Collective on Mat
1842b5df2d14SHong Zhang 
1843b5df2d14SHong Zhang    Input Parameters:
18441c4f3114SJed Brown +  B - the matrix
1845b5df2d14SHong Zhang .  bs   - size of blockk
1846b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1847b5df2d14SHong Zhang            submatrix  (same for all local rows)
1848b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18496d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18500298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
185195742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1852b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1853b5df2d14SHong Zhang            submatrix (same for all local rows).
1854b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1855c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
18560298fd71SBarry Smith            (possibly different for each block row) or NULL.
1857b5df2d14SHong Zhang 
1858b5df2d14SHong Zhang 
1859b5df2d14SHong Zhang    Options Database Keys:
1860b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1861b5df2d14SHong Zhang                      block calculations (much slower)
1862b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang    Notes:
1865b5df2d14SHong Zhang 
1866b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1867b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1868b5df2d14SHong Zhang 
186949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
187049a6f317SBarry Smith 
1871b5df2d14SHong Zhang    Storage Information:
1872b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1873b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1874b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1875b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1876b5df2d14SHong Zhang 
1877b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1878b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
18790298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
1880b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1881b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1882b5df2d14SHong Zhang 
1883aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1884aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1885aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1886aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1887aa95bbe8SBarry Smith 
1888b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1889b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1890b5df2d14SHong Zhang 
1891b5df2d14SHong Zhang .vb
1892b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1893a4b1a0f6SJed Brown           --------------------------
1894c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
1895c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
1896c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
1897a4b1a0f6SJed Brown           --------------------------
1898b5df2d14SHong Zhang .ve
1899b5df2d14SHong Zhang 
1900b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1901b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19026d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19036d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1904b5df2d14SHong Zhang 
19056d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19066d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1907c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
1908c2fc9fa9SBarry Smith 
1909b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1910b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1911b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1912b5df2d14SHong Zhang    matrices.
1913b5df2d14SHong Zhang 
1914b5df2d14SHong Zhang    Level: intermediate
1915b5df2d14SHong Zhang 
1916b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1917b5df2d14SHong Zhang 
1918ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
1919b5df2d14SHong Zhang @*/
19207087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1921b5df2d14SHong Zhang {
19224ac538c5SBarry Smith   PetscErrorCode ierr;
1923b5df2d14SHong Zhang 
1924b5df2d14SHong Zhang   PetscFunctionBegin;
19256ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
19266ba663aaSJed Brown   PetscValidType(B,1);
19276ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
19284ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1929b5df2d14SHong Zhang   PetscFunctionReturn(0);
1930b5df2d14SHong Zhang }
1931b5df2d14SHong Zhang 
19324a2ae208SSatish Balay #undef __FUNCT__
193369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
1934a30f8f8cSSatish Balay /*@C
193569b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1936a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1937a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1938a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1939a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1940a30f8f8cSSatish Balay 
1941a30f8f8cSSatish Balay    Collective on MPI_Comm
1942a30f8f8cSSatish Balay 
1943a30f8f8cSSatish Balay    Input Parameters:
1944a30f8f8cSSatish Balay +  comm - MPI communicator
1945a30f8f8cSSatish Balay .  bs   - size of blockk
1946a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1947a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1948a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1949a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1950a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1951a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1952a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1953a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1954a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1955a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1956a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19576d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19580298fd71SBarry Smith            (possibly different for each block block row) or NULL.
195995742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
196095742e49SBarry Smith            set its value even if it is zero.
1961a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1962a30f8f8cSSatish Balay            submatrix (same for all local rows).
1963a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1964a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
19650298fd71SBarry Smith            each block row) or NULL.
1966a30f8f8cSSatish Balay 
1967a30f8f8cSSatish Balay    Output Parameter:
1968a30f8f8cSSatish Balay .  A - the matrix
1969a30f8f8cSSatish Balay 
1970a30f8f8cSSatish Balay    Options Database Keys:
1971a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1972a30f8f8cSSatish Balay                      block calculations (much slower)
1973a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1974a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1975a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1976a30f8f8cSSatish Balay 
1977175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1978ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1979175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1980175b88e8SBarry Smith 
1981a30f8f8cSSatish Balay    Notes:
1982d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19836d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1984d1be2dadSMatthew Knepley 
1985a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1986a30f8f8cSSatish Balay    (possibly both).
1987a30f8f8cSSatish Balay 
1988a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1989a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1990a30f8f8cSSatish Balay 
199149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
199249a6f317SBarry Smith 
1993a30f8f8cSSatish Balay    Storage Information:
1994a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1995a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1996a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1997a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1998a30f8f8cSSatish Balay 
1999a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2000a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
20010298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2002a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2003a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2004a30f8f8cSSatish Balay 
2005a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2006a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2007a30f8f8cSSatish Balay 
2008a30f8f8cSSatish Balay .vb
2009a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2010a4b1a0f6SJed Brown           --------------------------
2011c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2012c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2013c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2014a4b1a0f6SJed Brown           --------------------------
2015a30f8f8cSSatish Balay .ve
2016a30f8f8cSSatish Balay 
2017a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2018a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20196d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20206d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2021a30f8f8cSSatish Balay 
20226d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20236d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2024a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2025a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2026a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2027a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2028a30f8f8cSSatish Balay    matrices.
2029a30f8f8cSSatish Balay 
2030a30f8f8cSSatish Balay    Level: intermediate
2031a30f8f8cSSatish Balay 
2032a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2033a30f8f8cSSatish Balay 
203469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2035a30f8f8cSSatish Balay @*/
2036a30f8f8cSSatish Balay 
203769b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2038a30f8f8cSSatish Balay {
20396849ba73SBarry Smith   PetscErrorCode ierr;
20401302d50aSBarry Smith   PetscMPIInt    size;
2041a30f8f8cSSatish Balay 
2042a30f8f8cSSatish Balay   PetscFunctionBegin;
2043f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2044f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2045273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2046273d9f13SBarry Smith   if (size > 1) {
2047b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2048b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2049273d9f13SBarry Smith   } else {
2050273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2051273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2052273d9f13SBarry Smith   }
2053a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2054a30f8f8cSSatish Balay }
2055a30f8f8cSSatish Balay 
2056a30f8f8cSSatish Balay 
20574a2ae208SSatish Balay #undef __FUNCT__
20584a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20596849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2060a30f8f8cSSatish Balay {
2061a30f8f8cSSatish Balay   Mat            mat;
2062a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2063dfbe8321SBarry Smith   PetscErrorCode ierr;
2064d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2065387bc808SHong Zhang   PetscScalar    *array;
2066a30f8f8cSSatish Balay 
2067a30f8f8cSSatish Balay   PetscFunctionBegin;
2068a30f8f8cSSatish Balay   *newmat = 0;
206926fbe8dcSKarl Rupp 
2070ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2071d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20727adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20731d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
20741e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
20751e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2076e1b6402fSHong Zhang 
2077d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2078273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
207982327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20807fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20817fff6886SHong Zhang 
2082b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2083a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2084a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2085a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2086a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2087a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2088a30f8f8cSSatish Balay 
2089899cda47SBarry Smith 
2090a30f8f8cSSatish Balay   a->size         = oldmat->size;
2091a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2092a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2093a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2094a30f8f8cSSatish Balay   a->rowindices   = 0;
2095a30f8f8cSSatish Balay   a->rowvalues    = 0;
2096a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2097a30f8f8cSSatish Balay   a->barray       = 0;
2098899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2099899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2100899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2101899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2102a30f8f8cSSatish Balay 
2103a30f8f8cSSatish Balay   /* hash table stuff */
2104a30f8f8cSSatish Balay   a->ht           = 0;
2105a30f8f8cSSatish Balay   a->hd           = 0;
2106a30f8f8cSSatish Balay   a->ht_size      = 0;
2107a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2108a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2109a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2110a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2111a30f8f8cSSatish Balay 
2112899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2113a30f8f8cSSatish Balay   if (oldmat->colmap) {
2114a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2115a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2116a30f8f8cSSatish Balay #else
2117785e854fSJed Brown     ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr);
21183bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21191302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2120a30f8f8cSSatish Balay #endif
2121a30f8f8cSSatish Balay   } else a->colmap = 0;
2122387bc808SHong Zhang 
2123a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2124785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
21253bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21261302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2127a30f8f8cSSatish Balay   } else a->garray = 0;
2128a30f8f8cSSatish Balay 
2129ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2130a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
21313bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2132a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
21333bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
213482327fa8SHong Zhang 
213582327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
21363bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
213782327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
21383bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2139387bc808SHong Zhang 
2140387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21411ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2142778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2143778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21441ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21451ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2146778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21471ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
21483bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
21493bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
21503bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
21513bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
21523bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2153387bc808SHong Zhang 
2154387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2155387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2156387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
21573bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
215882327fa8SHong Zhang 
2159a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
21603bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2161a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
21623bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2163140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2164a30f8f8cSSatish Balay   *newmat = mat;
2165a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2166a30f8f8cSSatish Balay }
2167a30f8f8cSSatish Balay 
21684a2ae208SSatish Balay #undef __FUNCT__
21695bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2170112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
217195936485SShri Abhyankar {
217295936485SShri Abhyankar   PetscErrorCode ierr;
217395936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
217495936485SShri Abhyankar   PetscScalar    *vals,*buf;
2175ce94432eSBarry Smith   MPI_Comm       comm;
217695936485SShri Abhyankar   MPI_Status     status;
2177adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2178adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
217995936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21803059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
218195936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
218295936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
218395936485SShri Abhyankar   int            fd;
218495936485SShri Abhyankar 
218595936485SShri Abhyankar   PetscFunctionBegin;
2186ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
21870298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21880298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
218995936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
21903059b6faSBarry Smith   if (bs < 0) bs = 1;
219195936485SShri Abhyankar 
219295936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
219395936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
219495936485SShri Abhyankar   if (!rank) {
219595936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
219695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
219795936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
219895936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
219995936485SShri Abhyankar   }
220095936485SShri Abhyankar 
220195936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
220295936485SShri Abhyankar 
220395936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
220426fbe8dcSKarl Rupp   M    = header[1];
220526fbe8dcSKarl Rupp   N    = header[2];
220695936485SShri Abhyankar 
220795936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
220895936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
220995936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
221095936485SShri Abhyankar 
221195936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
221295936485SShri Abhyankar   if (sizesset) {
221395936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
221495936485SShri Abhyankar   }
2215abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2216abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
221795936485SShri Abhyankar 
221895936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
221995936485SShri Abhyankar 
222095936485SShri Abhyankar   /*
222195936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
222295936485SShri Abhyankar      divisible by the blocksize
222395936485SShri Abhyankar   */
222495936485SShri Abhyankar   Mbs        = M/bs;
222595936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
222695936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
222795936485SShri Abhyankar   else                  Mbs++;
222895936485SShri Abhyankar   if (extra_rows &&!rank) {
222995936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
223095936485SShri Abhyankar   }
223195936485SShri Abhyankar 
223295936485SShri Abhyankar   /* determine ownership of all rows */
223395936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
223495936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
223595936485SShri Abhyankar     m   = mbs*bs;
223695936485SShri Abhyankar   } else { /* User Set */
223795936485SShri Abhyankar     m   = newmat->rmap->n;
223895936485SShri Abhyankar     mbs = m/bs;
223995936485SShri Abhyankar   }
2240dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
22414dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
224295936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
224395936485SShri Abhyankar   rowners[0] = 0;
224495936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
224595936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
224695936485SShri Abhyankar   rstart = rowners[rank];
224795936485SShri Abhyankar   rend   = rowners[rank+1];
224895936485SShri Abhyankar 
224995936485SShri Abhyankar   /* distribute row lengths to all processors */
2250785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
225195936485SShri Abhyankar   if (!rank) {
2252785e854fSJed Brown     ierr = PetscMalloc1((M+extra_rows),&rowlengths);CHKERRQ(ierr);
225395936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
225495936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2255785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
225695936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
225795936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
225895936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
225995936485SShri Abhyankar   } else {
226095936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
226195936485SShri Abhyankar   }
226295936485SShri Abhyankar 
226395936485SShri Abhyankar   if (!rank) {   /* procs[0] */
226495936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2265785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
226695936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
226795936485SShri Abhyankar     for (i=0; i<size; i++) {
226895936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
226995936485SShri Abhyankar         procsnz[i] += rowlengths[j];
227095936485SShri Abhyankar       }
227195936485SShri Abhyankar     }
227295936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
227395936485SShri Abhyankar 
227495936485SShri Abhyankar     /* determine max buffer needed and allocate it */
227595936485SShri Abhyankar     maxnz = 0;
227695936485SShri Abhyankar     for (i=0; i<size; i++) {
227795936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
227895936485SShri Abhyankar     }
2279785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
228095936485SShri Abhyankar 
228195936485SShri Abhyankar     /* read in my part of the matrix column indices  */
228295936485SShri Abhyankar     nz     = procsnz[0];
2283785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
228495936485SShri Abhyankar     mycols = ibuf;
228595936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
228695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
228726fbe8dcSKarl Rupp     if (size == 1) {
228826fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
228926fbe8dcSKarl Rupp     }
229095936485SShri Abhyankar 
229195936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
229295936485SShri Abhyankar     for (i=1; i<size-1; i++) {
229395936485SShri Abhyankar       nz   = procsnz[i];
229495936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
229595936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
229695936485SShri Abhyankar     }
229795936485SShri Abhyankar     /* read in the stuff for the last proc */
229895936485SShri Abhyankar     if (size != 1) {
229995936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
230095936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
230195936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
230295936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
230395936485SShri Abhyankar     }
230495936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
230595936485SShri Abhyankar   } else {  /* procs[i], i>0 */
230695936485SShri Abhyankar     /* determine buffer space needed for message */
230795936485SShri Abhyankar     nz = 0;
230826fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2309785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
231095936485SShri Abhyankar     mycols = ibuf;
231195936485SShri Abhyankar     /* receive message of column indices*/
231295936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
231395936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
231495936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
231595936485SShri Abhyankar   }
231695936485SShri Abhyankar 
231795936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2318dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2319dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
232095936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
232195936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
232295936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
232395936485SShri Abhyankar   rowcount = 0;
232495936485SShri Abhyankar   nzcount  = 0;
232595936485SShri Abhyankar   for (i=0; i<mbs; i++) {
232695936485SShri Abhyankar     dcount  = 0;
232795936485SShri Abhyankar     odcount = 0;
232895936485SShri Abhyankar     for (j=0; j<bs; j++) {
232995936485SShri Abhyankar       kmax = locrowlens[rowcount];
233095936485SShri Abhyankar       for (k=0; k<kmax; k++) {
233195936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
233295936485SShri Abhyankar         if (!mask[tmp]) {
233395936485SShri Abhyankar           mask[tmp] = 1;
233495936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
233595936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
233695936485SShri Abhyankar         }
233795936485SShri Abhyankar       }
233895936485SShri Abhyankar       rowcount++;
233995936485SShri Abhyankar     }
234095936485SShri Abhyankar 
234195936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
234295936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
234395936485SShri Abhyankar 
234495936485SShri Abhyankar     /* zero out the mask elements we set */
234595936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
234695936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
234795936485SShri Abhyankar   }
234895936485SShri Abhyankar   if (!sizesset) {
234995936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
235095936485SShri Abhyankar   }
235195936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
23526816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
235395936485SShri Abhyankar 
235495936485SShri Abhyankar   if (!rank) {
2355785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
235695936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
235795936485SShri Abhyankar     nz     = procsnz[0];
235895936485SShri Abhyankar     vals   = buf;
235995936485SShri Abhyankar     mycols = ibuf;
236095936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
236195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
236226fbe8dcSKarl Rupp     if (size == 1) {
236326fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
236426fbe8dcSKarl Rupp     }
236595936485SShri Abhyankar 
236695936485SShri Abhyankar     /* insert into matrix */
236795936485SShri Abhyankar     jj = rstart*bs;
236895936485SShri Abhyankar     for (i=0; i<m; i++) {
236995936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
237095936485SShri Abhyankar       mycols += locrowlens[i];
237195936485SShri Abhyankar       vals   += locrowlens[i];
237295936485SShri Abhyankar       jj++;
237395936485SShri Abhyankar     }
237495936485SShri Abhyankar 
237595936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
237695936485SShri Abhyankar     for (i=1; i<size-1; i++) {
237795936485SShri Abhyankar       nz   = procsnz[i];
237895936485SShri Abhyankar       vals = buf;
237995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
238095936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
238195936485SShri Abhyankar     }
238295936485SShri Abhyankar     /* the last proc */
238395936485SShri Abhyankar     if (size != 1) {
238495936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
238595936485SShri Abhyankar       vals = buf;
238695936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
238795936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
238895936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
238995936485SShri Abhyankar     }
239095936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
239195936485SShri Abhyankar 
239295936485SShri Abhyankar   } else {
239395936485SShri Abhyankar     /* receive numeric values */
2394785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
239595936485SShri Abhyankar 
239695936485SShri Abhyankar     /* receive message of values*/
239795936485SShri Abhyankar     vals   = buf;
239895936485SShri Abhyankar     mycols = ibuf;
239995936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
240095936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
240195936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
240295936485SShri Abhyankar 
240395936485SShri Abhyankar     /* insert into matrix */
240495936485SShri Abhyankar     jj = rstart*bs;
240595936485SShri Abhyankar     for (i=0; i<m; i++) {
240695936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
240795936485SShri Abhyankar       mycols += locrowlens[i];
240895936485SShri Abhyankar       vals   += locrowlens[i];
240995936485SShri Abhyankar       jj++;
241095936485SShri Abhyankar     }
241195936485SShri Abhyankar   }
241295936485SShri Abhyankar 
241395936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
241495936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
241595936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
241695936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
241795936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
241895936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
241995936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
242095936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
242195936485SShri Abhyankar   PetscFunctionReturn(0);
242295936485SShri Abhyankar }
242395936485SShri Abhyankar 
242495936485SShri Abhyankar #undef __FUNCT__
24254a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2426dcf5cc72SBarry Smith /*XXXXX@
2427a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2428a30f8f8cSSatish Balay 
2429a30f8f8cSSatish Balay    Input Parameters:
2430a30f8f8cSSatish Balay .  mat  - the matrix
2431a30f8f8cSSatish Balay .  fact - factor
2432a30f8f8cSSatish Balay 
2433c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2434a30f8f8cSSatish Balay 
2435a30f8f8cSSatish Balay    Level: advanced
2436a30f8f8cSSatish Balay 
2437a30f8f8cSSatish Balay   Notes:
2438a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2439a30f8f8cSSatish Balay 
2440a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2441a30f8f8cSSatish Balay 
2442a30f8f8cSSatish Balay .seealso: MatSetOption()
2443dcf5cc72SBarry Smith @XXXXX*/
2444dcf5cc72SBarry Smith 
244524d5174aSHong Zhang 
24464a2ae208SSatish Balay #undef __FUNCT__
2447985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2448985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
244924d5174aSHong Zhang {
245024d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2451f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2452ca54ac64SHong Zhang   PetscReal      atmp;
245387828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2454dfbe8321SBarry Smith   PetscErrorCode ierr;
24551302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24561302d50aSBarry Smith   PetscMPIInt    rank,size;
24571302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
245887828ca2SBarry Smith   PetscScalar    *va;
24598a1c53f2SBarry Smith   MatScalar      *ba;
2460f4c0e9e4SHong Zhang   MPI_Status     stat;
246124d5174aSHong Zhang 
246224d5174aSHong Zhang   PetscFunctionBegin;
2463e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
24640298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
24651ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2466f4c0e9e4SHong Zhang 
2467ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2468ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2469f4c0e9e4SHong Zhang 
2470d0f46423SBarry Smith   bs  = A->rmap->bs;
2471f4c0e9e4SHong Zhang   mbs = a->mbs;
2472f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2473f4c0e9e4SHong Zhang   ba  = b->a;
2474f4c0e9e4SHong Zhang   bi  = b->i;
2475f4c0e9e4SHong Zhang   bj  = b->j;
2476f4c0e9e4SHong Zhang 
2477f4c0e9e4SHong Zhang   /* find ownerships */
2478d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2479f4c0e9e4SHong Zhang 
2480f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2481785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2482ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2483f4c0e9e4SHong Zhang 
2484f4c0e9e4SHong Zhang   /* row_max for B */
2485b8475685SHong Zhang   if (rank != size-1) {
2486f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2487f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2488f4c0e9e4SHong Zhang       brow  = bs*i;
2489f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2490f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2491f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2492ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
249304d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2494f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2495f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2496ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2497ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2498f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2499f4c0e9e4SHong Zhang           }
2500f4c0e9e4SHong Zhang         }
2501f4c0e9e4SHong Zhang         bj++;
2502f4c0e9e4SHong Zhang       }
2503f4c0e9e4SHong Zhang     }
2504f4c0e9e4SHong Zhang 
2505f4c0e9e4SHong Zhang     /* send values to its owners */
2506f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2507f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2508ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2509ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2510ca54ac64SHong Zhang     }
2511f4c0e9e4SHong Zhang   }
2512f4c0e9e4SHong Zhang 
2513f4c0e9e4SHong Zhang   /* receive values */
2514ca54ac64SHong Zhang   if (rank) {
2515f4c0e9e4SHong Zhang     rvalues = work;
2516ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2517f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2518ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2519f4c0e9e4SHong Zhang       /* process values */
2520f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2521ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2522f4c0e9e4SHong Zhang       }
2523f4c0e9e4SHong Zhang     }
2524ca54ac64SHong Zhang   }
2525f4c0e9e4SHong Zhang 
25261ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2527ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
252824d5174aSHong Zhang   PetscFunctionReturn(0);
252924d5174aSHong Zhang }
25302798e883SHong Zhang 
25312798e883SHong Zhang #undef __FUNCT__
253241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
253341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25342798e883SHong Zhang {
25352798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2536dfbe8321SBarry Smith   PetscErrorCode    ierr;
2537d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25383649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2539ffe4fb16SHong Zhang   Vec               bb1;
25403649974fSBarry Smith   const PetscScalar *b;
2541ffe4fb16SHong Zhang 
2542ffe4fb16SHong Zhang   PetscFunctionBegin;
2543e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2544e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2545ffe4fb16SHong Zhang 
2546a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
254741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2548a2b30743SBarry Smith     PetscFunctionReturn(0);
2549a2b30743SBarry Smith   }
2550a2b30743SBarry Smith 
2551ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2552ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
255341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2554ffe4fb16SHong Zhang       its--;
2555ffe4fb16SHong Zhang     }
2556ffe4fb16SHong Zhang 
2557ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2558ffe4fb16SHong Zhang     while (its--) {
2559ffe4fb16SHong Zhang 
2560ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2561ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2562ffe4fb16SHong Zhang 
2563ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25641ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25651ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2566ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25671ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2568ffe4fb16SHong Zhang 
2569efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2570ffe4fb16SHong Zhang 
2571ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25721ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25733649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2574ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25751ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2576ffe4fb16SHong Zhang 
2577ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2578fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2579ffe4fb16SHong Zhang 
2580ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25811ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2582a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2583ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2584ffe4fb16SHong Zhang 
2585ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2586ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2587ffe4fb16SHong Zhang 
2588ffe4fb16SHong Zhang       /* local diagonal sweep */
258941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2590ffe4fb16SHong Zhang     }
25916bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2592fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
259341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2594fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
259541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2596fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2597fa22f6d0SBarry Smith     Vec               xx1;
2598ace3abfcSBarry Smith     PetscBool         hasop;
259920f1ed55SBarry Smith     const PetscScalar *diag;
2600887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
260120f1ed55SBarry Smith     PetscInt          i,n;
2602fa22f6d0SBarry Smith 
2603fa22f6d0SBarry Smith     if (!mat->xx1) {
2604fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2605fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2606fa22f6d0SBarry Smith     }
2607fa22f6d0SBarry Smith     xx1 = mat->xx1;
2608fa22f6d0SBarry Smith     bb1 = mat->bb1;
2609fa22f6d0SBarry Smith 
261041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2611fa22f6d0SBarry Smith 
2612fa22f6d0SBarry Smith     if (!mat->diag) {
2613effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26140298fd71SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2615fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2616fa22f6d0SBarry Smith     }
2617fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2618fa22f6d0SBarry Smith 
2619fa22f6d0SBarry Smith     if (hasop) {
2620fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2621887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
262220f1ed55SBarry Smith     } else {
262320f1ed55SBarry Smith       /*
262420f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
262520f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2626887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
262720f1ed55SBarry Smith       */
262820f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26293649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26303649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
263120f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
263220f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2633887ee2caSBarry Smith       if (omega == 1.0) {
263426fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
263520f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2636887ee2caSBarry Smith       } else {
263726fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2638887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2639887ee2caSBarry Smith       }
264020f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26413649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26423649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
264320f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
264420f1ed55SBarry Smith     }
2645fa22f6d0SBarry Smith 
2646fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2647fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2648fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2649fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2650fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2651fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2652fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2653fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2654fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2655fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2656effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2657fa22f6d0SBarry Smith 
2658fa22f6d0SBarry Smith     /* local sweep */
265941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2660fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2661f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2662ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2663ffe4fb16SHong Zhang }
2664ffe4fb16SHong Zhang 
2665ffe4fb16SHong Zhang #undef __FUNCT__
266641f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
266741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2668ffe4fb16SHong Zhang {
2669ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2670dfbe8321SBarry Smith   PetscErrorCode ierr;
26712798e883SHong Zhang   Vec            lvec1,bb1;
26722798e883SHong Zhang 
26732798e883SHong Zhang   PetscFunctionBegin;
2674e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2675e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26762798e883SHong Zhang 
2677c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
26782798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
267941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26802798e883SHong Zhang       its--;
26812798e883SHong Zhang     }
26822798e883SHong Zhang 
26832798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26842798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26852798e883SHong Zhang     while (its--) {
2686ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26872798e883SHong Zhang 
26882798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26892798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2690efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26912798e883SHong Zhang 
2692ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26932798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2694ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26952798e883SHong Zhang 
26962798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2697efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26982798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26992798e883SHong Zhang 
2700ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27012798e883SHong Zhang 
2702c14dc6b6SHong Zhang       /* diagonal sweep */
270341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27042798e883SHong Zhang     }
27056bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27066bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27076bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27082798e883SHong Zhang   PetscFunctionReturn(0);
27092798e883SHong Zhang }
27102798e883SHong Zhang 
2711dfb205c3SBarry Smith #undef __FUNCT__
2712dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2713dfb205c3SBarry Smith /*@
2714dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2715dfb205c3SBarry Smith          CSR format the local rows.
2716dfb205c3SBarry Smith 
2717dfb205c3SBarry Smith    Collective on MPI_Comm
2718dfb205c3SBarry Smith 
2719dfb205c3SBarry Smith    Input Parameters:
2720dfb205c3SBarry Smith +  comm - MPI communicator
2721dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2722dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2723dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2724dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2725dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2726dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2727dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2728dfb205c3SBarry Smith .   i - row indices
2729dfb205c3SBarry Smith .   j - column indices
2730dfb205c3SBarry Smith -   a - matrix values
2731dfb205c3SBarry Smith 
2732dfb205c3SBarry Smith    Output Parameter:
2733dfb205c3SBarry Smith .   mat - the matrix
2734dfb205c3SBarry Smith 
2735dfb205c3SBarry Smith    Level: intermediate
2736dfb205c3SBarry Smith 
2737dfb205c3SBarry Smith    Notes:
2738dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2739dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2740dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2741dfb205c3SBarry Smith 
2742dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2743dfb205c3SBarry Smith 
2744dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2745dfb205c3SBarry Smith 
2746dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
274769b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2748dfb205c3SBarry Smith @*/
27497087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2750dfb205c3SBarry Smith {
2751dfb205c3SBarry Smith   PetscErrorCode ierr;
2752dfb205c3SBarry Smith 
2753dfb205c3SBarry Smith 
2754dfb205c3SBarry Smith   PetscFunctionBegin;
2755f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2756dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2757dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2758dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2759dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2760dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2761dfb205c3SBarry Smith   PetscFunctionReturn(0);
2762dfb205c3SBarry Smith }
2763dfb205c3SBarry Smith 
2764dfb205c3SBarry Smith 
2765dfb205c3SBarry Smith #undef __FUNCT__
2766dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2767dfb205c3SBarry Smith /*@C
2768dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2769dfb205c3SBarry Smith    (the default parallel PETSc format).
2770dfb205c3SBarry Smith 
2771dfb205c3SBarry Smith    Collective on MPI_Comm
2772dfb205c3SBarry Smith 
2773dfb205c3SBarry Smith    Input Parameters:
27741c4f3114SJed Brown +  B - the matrix
2775dfb205c3SBarry Smith .  bs - the block size
2776dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2777dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2778dfb205c3SBarry Smith -  v - optional values in the matrix
2779dfb205c3SBarry Smith 
2780dfb205c3SBarry Smith    Level: developer
2781dfb205c3SBarry Smith 
2782dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2783dfb205c3SBarry Smith 
278469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2785dfb205c3SBarry Smith @*/
27867087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2787dfb205c3SBarry Smith {
27884ac538c5SBarry Smith   PetscErrorCode ierr;
2789dfb205c3SBarry Smith 
2790dfb205c3SBarry Smith   PetscFunctionBegin;
27914ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2792dfb205c3SBarry Smith   PetscFunctionReturn(0);
2793dfb205c3SBarry Smith }
2794dfb205c3SBarry Smith 
2795dfb205c3SBarry Smith 
2796