1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h" 57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6f3da1532SBarry Smith #include "petscblaslapack.h" 7a30f8f8cSSatish Balay 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay EXTERN_C_BEGIN 254a2ae208SSatish Balay #undef __FUNCT__ 264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 28a30f8f8cSSatish Balay { 29f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 30dfbe8321SBarry Smith PetscErrorCode ierr; 31a30f8f8cSSatish Balay 32a30f8f8cSSatish Balay PetscFunctionBegin; 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 34a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 35a30f8f8cSSatish Balay PetscFunctionReturn(0); 36a30f8f8cSSatish Balay } 37a30f8f8cSSatish Balay EXTERN_C_END 38a30f8f8cSSatish Balay 39a30f8f8cSSatish Balay EXTERN_C_BEGIN 404a2ae208SSatish Balay #undef __FUNCT__ 414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 43a30f8f8cSSatish Balay { 44f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 45dfbe8321SBarry Smith PetscErrorCode ierr; 46a30f8f8cSSatish Balay 47a30f8f8cSSatish Balay PetscFunctionBegin; 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 49a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 50a30f8f8cSSatish Balay PetscFunctionReturn(0); 51a30f8f8cSSatish Balay } 52a30f8f8cSSatish Balay EXTERN_C_END 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay 55a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 56a30f8f8cSSatish Balay { \ 57a30f8f8cSSatish Balay \ 58a30f8f8cSSatish Balay brow = row/bs; \ 59a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 60a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 61a30f8f8cSSatish Balay bcol = col/bs; \ 62a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 63a30f8f8cSSatish Balay low = 0; high = nrow; \ 64a30f8f8cSSatish Balay while (high-low > 3) { \ 65a30f8f8cSSatish Balay t = (low+high)/2; \ 66a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 67a30f8f8cSSatish Balay else low = t; \ 68a30f8f8cSSatish Balay } \ 69a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 70a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 71a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 72a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 73a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 74a30f8f8cSSatish Balay else *bap = value; \ 75a30f8f8cSSatish Balay goto a_noinsert; \ 76a30f8f8cSSatish Balay } \ 77a30f8f8cSSatish Balay } \ 78a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 79e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 80fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 81a30f8f8cSSatish Balay N = nrow++ - 1; \ 82a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 83a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 84a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 85a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 86a30f8f8cSSatish Balay } \ 87a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 88a30f8f8cSSatish Balay rp[_i] = bcol; \ 89a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 90a30f8f8cSSatish Balay a_noinsert:; \ 91a30f8f8cSSatish Balay ailen[brow] = nrow; \ 92a30f8f8cSSatish Balay } 93e5e170daSBarry Smith 94a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 95a30f8f8cSSatish Balay { \ 96a30f8f8cSSatish Balay brow = row/bs; \ 97a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 98a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 99a30f8f8cSSatish Balay bcol = col/bs; \ 100a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 101a30f8f8cSSatish Balay low = 0; high = nrow; \ 102a30f8f8cSSatish Balay while (high-low > 3) { \ 103a30f8f8cSSatish Balay t = (low+high)/2; \ 104a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 105a30f8f8cSSatish Balay else low = t; \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 108a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 109a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 110a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 111a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 112a30f8f8cSSatish Balay else *bap = value; \ 113a30f8f8cSSatish Balay goto b_noinsert; \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay } \ 116a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 117e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 118fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 119a30f8f8cSSatish Balay N = nrow++ - 1; \ 120a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 121a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 122a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 124a30f8f8cSSatish Balay } \ 125a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 126a30f8f8cSSatish Balay rp[_i] = bcol; \ 127a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 128a30f8f8cSSatish Balay b_noinsert:; \ 129a30f8f8cSSatish Balay bilen[brow] = nrow; \ 130a30f8f8cSSatish Balay } 131a30f8f8cSSatish Balay 132a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 133a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 134a30f8f8cSSatish Balay */ 1354a2ae208SSatish Balay #undef __FUNCT__ 136dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 137dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 138a30f8f8cSSatish Balay { 139a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 140a30f8f8cSSatish Balay MatScalar value; 141b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 142dfbe8321SBarry Smith PetscErrorCode ierr; 1431302d50aSBarry Smith PetscInt i,j,row,col; 144d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 145d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 146d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 147a30f8f8cSSatish Balay 148a30f8f8cSSatish Balay /* Some Variables required in the macro */ 149a30f8f8cSSatish Balay Mat A = baij->A; 150a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1511302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 152a30f8f8cSSatish Balay MatScalar *aa=a->a; 153a30f8f8cSSatish Balay 154a30f8f8cSSatish Balay Mat B = baij->B; 155a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1561302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 157a30f8f8cSSatish Balay MatScalar *ba=b->a; 158a30f8f8cSSatish Balay 1591302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1601302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 161a30f8f8cSSatish Balay MatScalar *ap,*bap; 162a30f8f8cSSatish Balay 163a30f8f8cSSatish Balay /* for stash */ 164910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 165910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 166a30f8f8cSSatish Balay 167a30f8f8cSSatish Balay PetscFunctionBegin; 16871fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 169a30f8f8cSSatish Balay if (!baij->donotstash){ 17059ffdab8SBarry Smith if (n > baij->n_loc) { 17159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith baij->n_loc = n; 17659ffdab8SBarry Smith } 17759ffdab8SBarry Smith in_loc = baij->in_loc; 17859ffdab8SBarry Smith v_loc = baij->v_loc; 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 181a30f8f8cSSatish Balay for (i=0; i<m; i++) { 182a30f8f8cSSatish Balay if (im[i] < 0) continue; 1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 184e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 185a30f8f8cSSatish Balay #endif 186a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 187a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 188a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18901b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19001b2bd88SHong Zhang if (a->ignore_ltriangular){ 19101b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19201b2bd88SHong Zhang } else { 193e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19401b2bd88SHong Zhang } 19501b2bd88SHong Zhang } 196a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 197a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 198a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 199a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 200a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 201a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 202a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 203a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2042515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 205cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 206a30f8f8cSSatish Balay #endif 207a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 208a30f8f8cSSatish Balay if (mat->was_assembled) { 209a30f8f8cSSatish Balay if (!baij->colmap) { 210653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 211a30f8f8cSSatish Balay } 212a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 213a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21471730473SSatish Balay col = col - 1; 215a30f8f8cSSatish Balay #else 21671730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 217a30f8f8cSSatish Balay #endif 218a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 219a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 220a30f8f8cSSatish Balay col = in[j]; 221a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 222a30f8f8cSSatish Balay B = baij->B; 223a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 224a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 225a30f8f8cSSatish Balay ba=b->a; 22671730473SSatish Balay } else col += in[j]%bs; 227a30f8f8cSSatish Balay } else col = in[j]; 228a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 230a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } else { /* off processor entry */ 234*4cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 235a30f8f8cSSatish Balay if (!baij->donotstash) { 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++){ 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray=baij->barray; 261f3f98c53SJed Brown PetscTruth roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if(!barray) { 2690880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 281e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 286f3f98c53SJed Brown if (im[i] > in[j]) { 287f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 288e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 289f3f98c53SJed Brown } 2900880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2910880e062SHong Zhang if ((roworiented) && (n == 1)) { 292f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2930880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 294f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2950880e062SHong Zhang } else { /* Here a copy is required */ 2960880e062SHong Zhang if (roworiented) { 2970880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2980880e062SHong Zhang } else { 2990880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3000880e062SHong Zhang } 3010880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3020880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3030880e062SHong Zhang *barray++ = *value++; 3040880e062SHong Zhang } 3050880e062SHong Zhang } 3060880e062SHong Zhang barray -=bs2; 3070880e062SHong Zhang } 3080880e062SHong Zhang 3090880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3100880e062SHong Zhang col = in[j] - cstart; 3110880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3120880e062SHong Zhang } 3130880e062SHong Zhang else if (in[j] < 0) continue; 3142515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 315cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3160880e062SHong Zhang #endif 3170880e062SHong Zhang else { 3180880e062SHong Zhang if (mat->was_assembled) { 3190880e062SHong Zhang if (!baij->colmap) { 320653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3210880e062SHong Zhang } 3220880e062SHong Zhang 3232515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3240880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3251302d50aSBarry Smith { PetscInt data; 3260880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 327e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3280880e062SHong Zhang } 3290880e062SHong Zhang #else 330e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #endif 3330880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3340880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3350880e062SHong Zhang col = (col - 1)/bs; 3360880e062SHong Zhang #else 3370880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3380880e062SHong Zhang #endif 3390880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3400880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3410880e062SHong Zhang col = in[j]; 3420880e062SHong Zhang } 3430880e062SHong Zhang } 3440880e062SHong Zhang else col = in[j]; 345e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3460880e062SHong Zhang } 3470880e062SHong Zhang } 3480880e062SHong Zhang } else { 349*4cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3500880e062SHong Zhang if (!baij->donotstash) { 3510880e062SHong Zhang if (roworiented) { 3520880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } else { 3540880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang } 3580880e062SHong Zhang } 3590880e062SHong Zhang PetscFunctionReturn(0); 360a30f8f8cSSatish Balay } 361a30f8f8cSSatish Balay 3624a2ae208SSatish Balay #undef __FUNCT__ 3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 365a30f8f8cSSatish Balay { 366f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3676849ba73SBarry Smith PetscErrorCode ierr; 368d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 369d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 370a30f8f8cSSatish Balay 371a30f8f8cSSatish Balay PetscFunctionBegin; 372a30f8f8cSSatish Balay for (i=0; i<m; i++) { 373e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 374e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 375a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 376a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 377a30f8f8cSSatish Balay for (j=0; j<n; j++) { 378e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 379e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 380a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 381a30f8f8cSSatish Balay col = idxn[j] - bscstart; 382c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 383a30f8f8cSSatish Balay } else { 384a30f8f8cSSatish Balay if (!baij->colmap) { 385653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 386a30f8f8cSSatish Balay } 387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 388a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 389a30f8f8cSSatish Balay data --; 390a30f8f8cSSatish Balay #else 391a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 392a30f8f8cSSatish Balay #endif 393a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 394a30f8f8cSSatish Balay else { 395a30f8f8cSSatish Balay col = data + idxn[j]%bs; 396e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay } else { 401e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay PetscFunctionReturn(0); 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay 4074a2ae208SSatish Balay #undef __FUNCT__ 4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 410a30f8f8cSSatish Balay { 411a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 412dfbe8321SBarry Smith PetscErrorCode ierr; 413a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 414a30f8f8cSSatish Balay 415a30f8f8cSSatish Balay PetscFunctionBegin; 416a30f8f8cSSatish Balay if (baij->size == 1) { 417a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } else { 419a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 420f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 421a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 422a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 423a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 424a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4257adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 426a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 427a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4280b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4290b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4300b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4310b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 432899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 433d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4340b8dc8d2SHong Zhang MatScalar *v; 4350b8dc8d2SHong Zhang 43674ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 437d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4380b8dc8d2SHong Zhang /* Amat */ 4390b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4400b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4410b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4420b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4430b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4440b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4450b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4460b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4470b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4480b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4490b8dc8d2SHong Zhang /* non-diagonal block */ 4500b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4510b8dc8d2SHong Zhang } 4520b8dc8d2SHong Zhang } 4530b8dc8d2SHong Zhang } 4540b8dc8d2SHong Zhang } 4550b8dc8d2SHong Zhang /* Bmat */ 4560b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4570b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4580b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4590b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4600b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4610b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4620b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4630b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4640b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4650b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4660b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4670b8dc8d2SHong Zhang } 4680b8dc8d2SHong Zhang } 4690b8dc8d2SHong Zhang } 4700b8dc8d2SHong Zhang } 471d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4720b8dc8d2SHong Zhang *norm = 0.0; 473d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4740b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4750b8dc8d2SHong Zhang } 47674ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 478e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 479a30f8f8cSSatish Balay } 480a30f8f8cSSatish Balay } 481a30f8f8cSSatish Balay PetscFunctionReturn(0); 482a30f8f8cSSatish Balay } 483a30f8f8cSSatish Balay 4844a2ae208SSatish Balay #undef __FUNCT__ 4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 487a30f8f8cSSatish Balay { 488a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 489dfbe8321SBarry Smith PetscErrorCode ierr; 4901302d50aSBarry Smith PetscInt nstash,reallocs; 491a30f8f8cSSatish Balay InsertMode addv; 492a30f8f8cSSatish Balay 493a30f8f8cSSatish Balay PetscFunctionBegin; 494*4cb17eb5SBarry Smith if (baij->donotstash || mat->nooffprocentries) { 495a30f8f8cSSatish Balay PetscFunctionReturn(0); 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay 498a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4997adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 500e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 501a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 502a30f8f8cSSatish Balay 503d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5041e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 505a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5081e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 509a30f8f8cSSatish Balay PetscFunctionReturn(0); 510a30f8f8cSSatish Balay } 511a30f8f8cSSatish Balay 5124a2ae208SSatish Balay #undef __FUNCT__ 5134a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 514dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 515a30f8f8cSSatish Balay { 516a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 517a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5186849ba73SBarry Smith PetscErrorCode ierr; 51913f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 520e44c0bd4SBarry Smith PetscInt *row,*col; 521e44c0bd4SBarry Smith PetscTruth other_disassembled; 52213f74950SBarry Smith PetscMPIInt n; 523a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 524a30f8f8cSSatish Balay MatScalar *val; 525a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 526a30f8f8cSSatish Balay 52791c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 528a30f8f8cSSatish Balay PetscFunctionBegin; 529a30f8f8cSSatish Balay 530*4cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 531a30f8f8cSSatish Balay while (1) { 532a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 533a30f8f8cSSatish Balay if (!flg) break; 534a30f8f8cSSatish Balay 535a30f8f8cSSatish Balay for (i=0; i<n;) { 536a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 537a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 538a30f8f8cSSatish Balay if (j < n) ncols = j-i; 539a30f8f8cSSatish Balay else ncols = n-i; 540a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 541dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 542a30f8f8cSSatish Balay i = j; 543a30f8f8cSSatish Balay } 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 546a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 547a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 548a30f8f8cSSatish Balay restore the original flags */ 549a30f8f8cSSatish Balay r1 = baij->roworiented; 550a30f8f8cSSatish Balay r2 = a->roworiented; 55191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 552a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 553a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 555a30f8f8cSSatish Balay while (1) { 556a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 557a30f8f8cSSatish Balay if (!flg) break; 558a30f8f8cSSatish Balay 559a30f8f8cSSatish Balay for (i=0; i<n;) { 560a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 561a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 562a30f8f8cSSatish Balay if (j < n) ncols = j-i; 563a30f8f8cSSatish Balay else ncols = n-i; 564dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 565a30f8f8cSSatish Balay i = j; 566a30f8f8cSSatish Balay } 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 569a30f8f8cSSatish Balay baij->roworiented = r1; 570a30f8f8cSSatish Balay a->roworiented = r2; 57191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay 574a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 576a30f8f8cSSatish Balay 577a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 578a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 579a30f8f8cSSatish Balay /* 580a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 581a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 582a30f8f8cSSatish Balay */ 583a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5847adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 585a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 586c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay 590a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59140781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 592a30f8f8cSSatish Balay } 59391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 594a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 595a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 596a30f8f8cSSatish Balay 59774ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 598a30f8f8cSSatish Balay baij->rowvalues = 0; 5995222a1afSHong Zhang 600a30f8f8cSSatish Balay PetscFunctionReturn(0); 601a30f8f8cSSatish Balay } 602a30f8f8cSSatish Balay 603dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6044a2ae208SSatish Balay #undef __FUNCT__ 6054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6066849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 607a30f8f8cSSatish Balay { 608a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 609dfbe8321SBarry Smith PetscErrorCode ierr; 610d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6111302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 61232077d6dSBarry Smith PetscTruth iascii,isdraw; 613b0a32e0cSBarry Smith PetscViewer sviewer; 614f3ef73ceSBarry Smith PetscViewerFormat format; 615a30f8f8cSSatish Balay 616a30f8f8cSSatish Balay PetscFunctionBegin; 6172692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6182692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 61932077d6dSBarry Smith if (iascii) { 620b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 621456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 622a30f8f8cSSatish Balay MatInfo info; 6237adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 624a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62577431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 626d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 627d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 628a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 62977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 63177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 632b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63307d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 634a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 635a30f8f8cSSatish Balay PetscFunctionReturn(0); 636fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 638a30f8f8cSSatish Balay PetscFunctionReturn(0); 639c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 640c1490034SHong Zhang PetscFunctionReturn(0); 641a30f8f8cSSatish Balay } 642a30f8f8cSSatish Balay } 643a30f8f8cSSatish Balay 644a30f8f8cSSatish Balay if (isdraw) { 645b0a32e0cSBarry Smith PetscDraw draw; 646a30f8f8cSSatish Balay PetscTruth isnull; 647b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 648b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 651a30f8f8cSSatish Balay if (size == 1) { 6527adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 653a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 654a30f8f8cSSatish Balay } else { 655a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 656a30f8f8cSSatish Balay Mat A; 65765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 659d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 660a30f8f8cSSatish Balay MatScalar *a; 661a30f8f8cSSatish Balay 662f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6637adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 664a30f8f8cSSatish Balay if (!rank) { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } else { 667f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 668a30f8f8cSSatish Balay } 669f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 670d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 67152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 672a30f8f8cSSatish Balay 673a30f8f8cSSatish Balay /* copy over the A part */ 67465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 675a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6761302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 679e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 680a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 681a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 682e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 683a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 684dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 685a30f8f8cSSatish Balay col++; a += bs; 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay /* copy over the B part */ 69065d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69165d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 692a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 693e9f7bc9eSHong Zhang 694e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 695a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 696a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 697a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 698a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 699799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 700a30f8f8cSSatish Balay col++; a += bs; 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 705a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 706a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 707a30f8f8cSSatish Balay /* 708a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 709b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 710a30f8f8cSSatish Balay */ 711b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71265d70643SHong Zhang if (!rank) { 7137adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 714a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 715a30f8f8cSSatish Balay } 716b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay PetscFunctionReturn(0); 720a30f8f8cSSatish Balay } 721a30f8f8cSSatish Balay 7224a2ae208SSatish Balay #undef __FUNCT__ 7234a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 724dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 725a30f8f8cSSatish Balay { 726dfbe8321SBarry Smith PetscErrorCode ierr; 72732077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 728a30f8f8cSSatish Balay 729a30f8f8cSSatish Balay PetscFunctionBegin; 7302692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 7312692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7322692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 7332692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73432077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 735a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 736a30f8f8cSSatish Balay } else { 737e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay PetscFunctionReturn(0); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay 7424a2ae208SSatish Balay #undef __FUNCT__ 7434a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 744dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 745a30f8f8cSSatish Balay { 746a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 748a30f8f8cSSatish Balay 749a30f8f8cSSatish Balay PetscFunctionBegin; 750a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 751d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 752a30f8f8cSSatish Balay #endif 753a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 75513ea16ffSHong Zhang if (baij->A){ierr = MatDestroy(baij->A);CHKERRQ(ierr);} 75613ea16ffSHong Zhang if (baij->B){ierr = MatDestroy(baij->B);CHKERRQ(ierr);} 757a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7589c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 759a30f8f8cSSatish Balay #else 76005b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 761a30f8f8cSSatish Balay #endif 76205b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 763a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 764a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76540781036SHong Zhang if (baij->slvec0) { 76640781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76740781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76840781036SHong Zhang } 76940781036SHong Zhang if (baij->slvec1) { 77040781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 77140781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77240781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77340781036SHong Zhang } 77440781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 7755755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77605b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77705b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 778fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 779fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 780fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 78165460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE) 78205b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 783a30f8f8cSSatish Balay #endif 78459ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78559ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 786899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 787a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 788901853e0SKris Buschelman 789dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 790901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 792901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 793901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 794a30f8f8cSSatish Balay PetscFunctionReturn(0); 795a30f8f8cSSatish Balay } 796a30f8f8cSSatish Balay 7974a2ae208SSatish Balay #undef __FUNCT__ 798547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 799547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 800547795f9SHong Zhang { 801547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 802547795f9SHong Zhang PetscErrorCode ierr; 803547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 804547795f9SHong Zhang PetscScalar *x,*from; 805547795f9SHong Zhang 806547795f9SHong Zhang PetscFunctionBegin; 807547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 808e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 809547795f9SHong Zhang 810547795f9SHong Zhang /* diagonal part */ 811547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 812547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 813547795f9SHong Zhang 814547795f9SHong Zhang /* subdiagonal part */ 815547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 816547795f9SHong Zhang 817547795f9SHong Zhang /* copy x into the vec slvec0 */ 818547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 819547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 820547795f9SHong Zhang 821547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 823547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 824547795f9SHong Zhang 825547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 826547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 827547795f9SHong Zhang /* supperdiagonal part */ 828547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 829547795f9SHong Zhang PetscFunctionReturn(0); 830547795f9SHong Zhang } 831547795f9SHong Zhang 832547795f9SHong Zhang #undef __FUNCT__ 833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 835a9d4b620SHong Zhang { 836a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 837dfbe8321SBarry Smith PetscErrorCode ierr; 838d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 839fa22f6d0SBarry Smith PetscScalar *x,*from; 840a9d4b620SHong Zhang 841a9d4b620SHong Zhang PetscFunctionBegin; 842a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 843e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 844a9d4b620SHong Zhang 845a9d4b620SHong Zhang /* diagonal part */ 846a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 847fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 848a9d4b620SHong Zhang 849a9d4b620SHong Zhang /* subdiagonal part */ 850a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 851fc165ae2SBarry Smith 852a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8531ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 855a9d4b620SHong Zhang 856fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 857fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8581ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 859fc165ae2SBarry Smith 860fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 861ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 862a9d4b620SHong Zhang /* supperdiagonal part */ 863a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 864a9d4b620SHong Zhang PetscFunctionReturn(0); 865a9d4b620SHong Zhang } 866a9d4b620SHong Zhang 867a9d4b620SHong Zhang #undef __FUNCT__ 86840781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 869dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 870a30f8f8cSSatish Balay { 871a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 872dfbe8321SBarry Smith PetscErrorCode ierr; 8731302d50aSBarry Smith PetscInt nt; 874a30f8f8cSSatish Balay 875a30f8f8cSSatish Balay PetscFunctionBegin; 876a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 877e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 878e7e72b3dSBarry Smith 879a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 880e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88165d70643SHong Zhang 882ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 883b941877fSHong Zhang /* do diagonal part */ 884b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 885b941877fSHong Zhang /* do supperdiagonal part */ 886ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 887b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 888b941877fSHong Zhang /* do subdiagonal part */ 889b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 890ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 891ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 89265d70643SHong Zhang 893a30f8f8cSSatish Balay PetscFunctionReturn(0); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 8964a2ae208SSatish Balay #undef __FUNCT__ 8974a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 898dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 899a30f8f8cSSatish Balay { 900de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 901dfbe8321SBarry Smith PetscErrorCode ierr; 902d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 903a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 904a9d4b620SHong Zhang 905a9d4b620SHong Zhang PetscFunctionBegin; 906a9d4b620SHong Zhang /* 9077adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9087adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 909a9d4b620SHong Zhang */ 910a9d4b620SHong Zhang /* diagonal part */ 911a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9122dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 913a9d4b620SHong Zhang 914a9d4b620SHong Zhang /* subdiagonal part */ 915a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 916a9d4b620SHong Zhang 917a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9181ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9191ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 920a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9211ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 922a9d4b620SHong Zhang 923ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9241ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 925ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 926a9d4b620SHong Zhang 927a9d4b620SHong Zhang /* supperdiagonal part */ 928a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 929a9d4b620SHong Zhang 930a9d4b620SHong Zhang PetscFunctionReturn(0); 931a9d4b620SHong Zhang } 932a9d4b620SHong Zhang 933a9d4b620SHong Zhang #undef __FUNCT__ 934a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 935dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 936a9d4b620SHong Zhang { 937a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 938dfbe8321SBarry Smith PetscErrorCode ierr; 939a30f8f8cSSatish Balay 940a30f8f8cSSatish Balay PetscFunctionBegin; 941ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 942b941877fSHong Zhang /* do diagonal part */ 943b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 944b941877fSHong Zhang /* do supperdiagonal part */ 945ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 946de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 947de8b6608SHong Zhang 948b941877fSHong Zhang /* do subdiagonal part */ 949a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 950ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 951ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 952aa482183SHong Zhang 953a30f8f8cSSatish Balay PetscFunctionReturn(0); 954a30f8f8cSSatish Balay } 955a30f8f8cSSatish Balay 956a30f8f8cSSatish Balay /* 957a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 958a30f8f8cSSatish Balay diagonal block 959a30f8f8cSSatish Balay */ 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 963a30f8f8cSSatish Balay { 964a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 965dfbe8321SBarry Smith PetscErrorCode ierr; 966a30f8f8cSSatish Balay 967a30f8f8cSSatish Balay PetscFunctionBegin; 968e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 969a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 970a30f8f8cSSatish Balay PetscFunctionReturn(0); 971a30f8f8cSSatish Balay } 972a30f8f8cSSatish Balay 9734a2ae208SSatish Balay #undef __FUNCT__ 9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 976a30f8f8cSSatish Balay { 977a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 978dfbe8321SBarry Smith PetscErrorCode ierr; 979a30f8f8cSSatish Balay 980a30f8f8cSSatish Balay PetscFunctionBegin; 981f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 982f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 983a30f8f8cSSatish Balay PetscFunctionReturn(0); 984a30f8f8cSSatish Balay } 985a30f8f8cSSatish Balay 9864a2ae208SSatish Balay #undef __FUNCT__ 9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 989a30f8f8cSSatish Balay { 990d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 991d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 992d0d4cfc2SHong Zhang PetscErrorCode ierr; 993d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 994d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 995899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 996d0d4cfc2SHong Zhang 997a30f8f8cSSatish Balay PetscFunctionBegin; 998e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 999d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1000d0d4cfc2SHong Zhang 1001d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1002d0d4cfc2SHong Zhang /* 1003d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1004d0d4cfc2SHong Zhang */ 1005d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1006d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1007d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1008d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1009d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1010d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1011d0d4cfc2SHong Zhang } 101274ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1013d0d4cfc2SHong Zhang } 1014d0d4cfc2SHong Zhang 1015e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1016d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1017d0d4cfc2SHong Zhang 1018d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1019d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1020d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1021d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1022d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1023d0d4cfc2SHong Zhang nztot = nzA + nzB; 1024d0d4cfc2SHong Zhang 1025d0d4cfc2SHong Zhang cmap = mat->garray; 1026d0d4cfc2SHong Zhang if (v || idx) { 1027d0d4cfc2SHong Zhang if (nztot) { 1028d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1029d0d4cfc2SHong Zhang PetscInt imark = -1; 1030d0d4cfc2SHong Zhang if (v) { 1031d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1032d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1033d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1034d0d4cfc2SHong Zhang else break; 1035d0d4cfc2SHong Zhang } 1036d0d4cfc2SHong Zhang imark = i; 1037d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1038d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1039d0d4cfc2SHong Zhang } 1040d0d4cfc2SHong Zhang if (idx) { 1041d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1042d0d4cfc2SHong Zhang if (imark > -1) { 1043d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1044d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang } else { 1047d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1048d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1049d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1050d0d4cfc2SHong Zhang else break; 1051d0d4cfc2SHong Zhang } 1052d0d4cfc2SHong Zhang imark = i; 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1055d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1056d0d4cfc2SHong Zhang } 1057d0d4cfc2SHong Zhang } else { 1058d0d4cfc2SHong Zhang if (idx) *idx = 0; 1059d0d4cfc2SHong Zhang if (v) *v = 0; 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang } 1062d0d4cfc2SHong Zhang *nz = nztot; 1063d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1064d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1065a30f8f8cSSatish Balay PetscFunctionReturn(0); 1066a30f8f8cSSatish Balay } 1067a30f8f8cSSatish Balay 10684a2ae208SSatish Balay #undef __FUNCT__ 10694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10701302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1071a30f8f8cSSatish Balay { 1072a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1073a30f8f8cSSatish Balay 1074a30f8f8cSSatish Balay PetscFunctionBegin; 1075e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1076a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1077a30f8f8cSSatish Balay PetscFunctionReturn(0); 1078a30f8f8cSSatish Balay } 1079a30f8f8cSSatish Balay 10804a2ae208SSatish Balay #undef __FUNCT__ 1081d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1082d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1083d0d4cfc2SHong Zhang { 1084d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1085d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1086d0d4cfc2SHong Zhang 1087d0d4cfc2SHong Zhang PetscFunctionBegin; 1088d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1089d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1090d0d4cfc2SHong Zhang } 1091d0d4cfc2SHong Zhang #undef __FUNCT__ 1092d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1093d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1094d0d4cfc2SHong Zhang { 1095d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1096d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1097d0d4cfc2SHong Zhang 1098d0d4cfc2SHong Zhang PetscFunctionBegin; 1099d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1100d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1101d0d4cfc2SHong Zhang } 1102d0d4cfc2SHong Zhang 1103d0d4cfc2SHong Zhang #undef __FUNCT__ 110499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110699cafbc1SBarry Smith { 110799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110899cafbc1SBarry Smith PetscErrorCode ierr; 110999cafbc1SBarry Smith 111099cafbc1SBarry Smith PetscFunctionBegin; 111199cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111299cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111399cafbc1SBarry Smith PetscFunctionReturn(0); 111499cafbc1SBarry Smith } 111599cafbc1SBarry Smith 111699cafbc1SBarry Smith #undef __FUNCT__ 111799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111999cafbc1SBarry Smith { 112099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112199cafbc1SBarry Smith PetscErrorCode ierr; 112299cafbc1SBarry Smith 112399cafbc1SBarry Smith PetscFunctionBegin; 112499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112699cafbc1SBarry Smith PetscFunctionReturn(0); 112799cafbc1SBarry Smith } 112899cafbc1SBarry Smith 112999cafbc1SBarry Smith #undef __FUNCT__ 11304a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1131dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1132a30f8f8cSSatish Balay { 1133a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1134dfbe8321SBarry Smith PetscErrorCode ierr; 1135a30f8f8cSSatish Balay 1136a30f8f8cSSatish Balay PetscFunctionBegin; 1137a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay PetscFunctionReturn(0); 1140a30f8f8cSSatish Balay } 1141a30f8f8cSSatish Balay 11424a2ae208SSatish Balay #undef __FUNCT__ 11434a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1144dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1145a30f8f8cSSatish Balay { 1146a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1147a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1148dfbe8321SBarry Smith PetscErrorCode ierr; 1149a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1150a30f8f8cSSatish Balay 1151a30f8f8cSSatish Balay PetscFunctionBegin; 1152d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1153a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1154a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1155a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1156a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1157a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1158a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1159a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1160a30f8f8cSSatish Balay info->nz_used = isend[0]; 1161a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1162a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1163a30f8f8cSSatish Balay info->memory = isend[3]; 1164a30f8f8cSSatish Balay info->mallocs = isend[4]; 1165a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11667adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1167a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1168a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1169a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1170a30f8f8cSSatish Balay info->memory = irecv[3]; 1171a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1172a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11737adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1175a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1176a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1177a30f8f8cSSatish Balay info->memory = irecv[3]; 1178a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1179a30f8f8cSSatish Balay } else { 1180e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1183a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1184a30f8f8cSSatish Balay info->factor_mallocs = 0; 1185a30f8f8cSSatish Balay PetscFunctionReturn(0); 1186a30f8f8cSSatish Balay } 1187a30f8f8cSSatish Balay 11884a2ae208SSatish Balay #undef __FUNCT__ 11894a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 11904e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1191a30f8f8cSSatish Balay { 1192a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1193d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1194dfbe8321SBarry Smith PetscErrorCode ierr; 1195a30f8f8cSSatish Balay 1196a30f8f8cSSatish Balay PetscFunctionBegin; 1197e98b92d7SKris Buschelman switch (op) { 1198512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1199e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 120028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1201a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1202e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12034e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12044e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1205e98b92d7SKris Buschelman break; 1206e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12074e0d8c25SBarry Smith a->roworiented = flg; 12084e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12094e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1210e98b92d7SKris Buschelman break; 12114e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1212290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1213e98b92d7SKris Buschelman break; 1214e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12154e0d8c25SBarry Smith a->donotstash = flg; 1216e98b92d7SKris Buschelman break; 1217e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12184e0d8c25SBarry Smith a->ht_flag = flg; 1219e98b92d7SKris Buschelman break; 12209a4540c5SBarry Smith case MAT_HERMITIAN: 1221e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1222eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1223547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1224eeffb40dSHong Zhang break; 1225ffa07934SHong Zhang case MAT_SPD: 1226ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1227ffa07934SHong Zhang A->spd = flg; 1228ffa07934SHong Zhang if (flg) { 1229ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1230ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1231ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1232ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1233ffa07934SHong Zhang } 1234ffa07934SHong Zhang break; 123577e54ba9SKris Buschelman case MAT_SYMMETRIC: 1236eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1237eeffb40dSHong Zhang break; 123877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1239eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1240eeffb40dSHong Zhang break; 12419a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1242e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1243290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124477e54ba9SKris Buschelman break; 1245d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12464e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1247d0d4cfc2SHong Zhang break; 1248d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12494e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1250d0d4cfc2SHong Zhang break; 1251d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12524e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1253d0d4cfc2SHong Zhang break; 1254e98b92d7SKris Buschelman default: 1255e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay PetscFunctionReturn(0); 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay 12604a2ae208SSatish Balay #undef __FUNCT__ 12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1263a30f8f8cSSatish Balay { 1264dfbe8321SBarry Smith PetscErrorCode ierr; 1265a30f8f8cSSatish Balay PetscFunctionBegin; 1266815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1267999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1268fc4dec0aSBarry Smith } 12698115998fSBarry Smith PetscFunctionReturn(0); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay 12724a2ae208SSatish Balay #undef __FUNCT__ 12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1275a30f8f8cSSatish Balay { 1276a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1277a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1278dfbe8321SBarry Smith PetscErrorCode ierr; 12795e90f9d9SHong Zhang PetscInt nv,m,n; 1280b3bf805bSHong Zhang PetscTruth flg; 1281a30f8f8cSSatish Balay 1282a30f8f8cSSatish Balay PetscFunctionBegin; 1283a30f8f8cSSatish Balay if (ll != rr){ 1284b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1285e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1286a30f8f8cSSatish Balay } 1287b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1288b3bf805bSHong Zhang 12895e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1290e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1291b3bf805bSHong Zhang 12925e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1293e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12945e90f9d9SHong Zhang 1295ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12965e90f9d9SHong Zhang 12975e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1298a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12995e90f9d9SHong Zhang 13005e90f9d9SHong Zhang /* scale the diagonal part */ 1301a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1302a30f8f8cSSatish Balay 13035e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1304ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay PetscFunctionReturn(0); 1307a30f8f8cSSatish Balay } 1308a30f8f8cSSatish Balay 13094a2ae208SSatish Balay #undef __FUNCT__ 13104a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1311dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1312a30f8f8cSSatish Balay { 1313f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1314dfbe8321SBarry Smith PetscErrorCode ierr; 1315a30f8f8cSSatish Balay 1316a30f8f8cSSatish Balay PetscFunctionBegin; 1317a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1318a30f8f8cSSatish Balay PetscFunctionReturn(0); 1319a30f8f8cSSatish Balay } 1320a30f8f8cSSatish Balay 13216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1322a30f8f8cSSatish Balay 13234a2ae208SSatish Balay #undef __FUNCT__ 13244a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1325dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1326a30f8f8cSSatish Balay { 1327a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1328a30f8f8cSSatish Balay Mat a,b,c,d; 1329a30f8f8cSSatish Balay PetscTruth flg; 1330dfbe8321SBarry Smith PetscErrorCode ierr; 1331a30f8f8cSSatish Balay 1332a30f8f8cSSatish Balay PetscFunctionBegin; 1333a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1334a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1335a30f8f8cSSatish Balay 1336a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1337abc0a331SBarry Smith if (flg) { 1338a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1339a30f8f8cSSatish Balay } 13407adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay PetscFunctionReturn(0); 1342a30f8f8cSSatish Balay } 1343a30f8f8cSSatish Balay 13444a2ae208SSatish Balay #undef __FUNCT__ 13453c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13463c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13473c896bc6SHong Zhang { 13483c896bc6SHong Zhang PetscErrorCode ierr; 13493c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13503c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13513c896bc6SHong Zhang 13523c896bc6SHong Zhang PetscFunctionBegin; 13533c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13543c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1355d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13563c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1357d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13583c896bc6SHong Zhang } else { 13593c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13603c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13613c896bc6SHong Zhang } 13623c896bc6SHong Zhang PetscFunctionReturn(0); 13633c896bc6SHong Zhang } 13643c896bc6SHong Zhang 13653c896bc6SHong Zhang #undef __FUNCT__ 13664a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1367dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1368273d9f13SBarry Smith { 1369dfbe8321SBarry Smith PetscErrorCode ierr; 1370273d9f13SBarry Smith 1371273d9f13SBarry Smith PetscFunctionBegin; 1372db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1373273d9f13SBarry Smith PetscFunctionReturn(0); 1374273d9f13SBarry Smith } 1375a5e6ed63SBarry Smith 13764fe895cdSHong Zhang #undef __FUNCT__ 13774fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13784fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13794fe895cdSHong Zhang { 13804fe895cdSHong Zhang PetscErrorCode ierr; 13814fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13824fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13834fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13844fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13854fe895cdSHong Zhang 13864fe895cdSHong Zhang PetscFunctionBegin; 13874fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13884fe895cdSHong Zhang PetscScalar alpha = a; 13894fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13904fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13910805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13924fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13934fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13944fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13950805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13964fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13974fe895cdSHong Zhang } else { 1398d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13994fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1400d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14014fe895cdSHong Zhang } 14024fe895cdSHong Zhang PetscFunctionReturn(0); 14034fe895cdSHong Zhang } 14044fe895cdSHong Zhang 1405a5e6ed63SBarry Smith #undef __FUNCT__ 14066363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 14076363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 14086363de48SJed Brown { 14096363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14106363de48SJed Brown PetscInt rbs,cbs; 14116363de48SJed Brown PetscErrorCode ierr; 14126363de48SJed Brown 14136363de48SJed Brown PetscFunctionBegin; 14146363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14156363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14166363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14176363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1418e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 1419e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14206363de48SJed Brown PetscFunctionReturn(0); 14216363de48SJed Brown } 14226363de48SJed Brown 14236363de48SJed Brown #undef __FUNCT__ 1424a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14251302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1426a5e6ed63SBarry Smith { 14276849ba73SBarry Smith PetscErrorCode ierr; 14281302d50aSBarry Smith PetscInt i; 1429a5e6ed63SBarry Smith PetscTruth flg; 1430a5e6ed63SBarry Smith 14316849ba73SBarry Smith PetscFunctionBegin; 1432a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1433a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1434e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1435a5e6ed63SBarry Smith } 1436a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1437a5e6ed63SBarry Smith PetscFunctionReturn(0); 1438a5e6ed63SBarry Smith } 1439a5e6ed63SBarry Smith 1440a5e6ed63SBarry Smith 1441a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1442a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1443a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1444a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1445a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1446a9d4b620SHong Zhang MatMult_MPISBAIJ, 144797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1448431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1449431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1450a30f8f8cSSatish Balay 0, 1451a30f8f8cSSatish Balay 0, 1452a30f8f8cSSatish Balay 0, 145397304618SKris Buschelman /*10*/ 0, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 145641f059aeSBarry Smith MatSOR_MPISBAIJ, 1457a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 145897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1459a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1460a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1461a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1462a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 146397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1464a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1465a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1466a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1467d519adbfSMatthew Knepley /*24*/ 0, 1468a30f8f8cSSatish Balay 0, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 1472d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1473b5df2d14SHong Zhang 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1483a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1484d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1485a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14863c896bc6SHong Zhang MatCopy_MPISBAIJ, 1487d519adbfSMatthew Knepley /*44*/ 0, 1488a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 14926363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 1497d519adbfSMatthew Knepley /*54*/ 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1502d519adbfSMatthew Knepley /*59*/ 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505357abbc8SBarry Smith 0, 150624d5174aSHong Zhang 0, 1507d519adbfSMatthew Knepley /*64*/ 0, 150824d5174aSHong Zhang 0, 150924d5174aSHong Zhang 0, 151024d5174aSHong Zhang 0, 151124d5174aSHong Zhang 0, 1512d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 151324d5174aSHong Zhang 0, 151497304618SKris Buschelman 0, 151597304618SKris Buschelman 0, 151697304618SKris Buschelman 0, 1517d519adbfSMatthew Knepley /*74*/ 0, 151897304618SKris Buschelman 0, 151997304618SKris Buschelman 0, 152097304618SKris Buschelman 0, 152197304618SKris Buschelman 0, 1522d519adbfSMatthew Knepley /*79*/ 0, 152397304618SKris Buschelman 0, 152497304618SKris Buschelman 0, 152597304618SKris Buschelman 0, 15265bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1527d519adbfSMatthew Knepley /*84*/ 0, 1528865e5f61SKris Buschelman 0, 1529865e5f61SKris Buschelman 0, 1530865e5f61SKris Buschelman 0, 1531865e5f61SKris Buschelman 0, 1532d519adbfSMatthew Knepley /*89*/ 0, 1533865e5f61SKris Buschelman 0, 1534865e5f61SKris Buschelman 0, 1535865e5f61SKris Buschelman 0, 1536865e5f61SKris Buschelman 0, 1537d519adbfSMatthew Knepley /*94*/ 0, 1538865e5f61SKris Buschelman 0, 1539865e5f61SKris Buschelman 0, 154099cafbc1SBarry Smith 0, 154199cafbc1SBarry Smith 0, 1542d519adbfSMatthew Knepley /*99*/ 0, 154399cafbc1SBarry Smith 0, 154499cafbc1SBarry Smith 0, 154599cafbc1SBarry Smith 0, 154699cafbc1SBarry Smith 0, 1547d519adbfSMatthew Knepley /*104*/0, 154899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1549d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1550d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 155195936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 155295936485SShri Abhyankar /*109*/0, 155395936485SShri Abhyankar 0, 155495936485SShri Abhyankar 0, 155595936485SShri Abhyankar 0, 155695936485SShri Abhyankar 0, 155795936485SShri Abhyankar /*114*/0, 155895936485SShri Abhyankar 0, 155995936485SShri Abhyankar 0, 156095936485SShri Abhyankar 0, 156195936485SShri Abhyankar 0, 156295936485SShri Abhyankar /*119*/0, 156395936485SShri Abhyankar 0, 156495936485SShri Abhyankar 0, 15655bba2384SShri Abhyankar 0 156699cafbc1SBarry Smith }; 1567a30f8f8cSSatish Balay 1568a30f8f8cSSatish Balay 1569a30f8f8cSSatish Balay EXTERN_C_BEGIN 15704a2ae208SSatish Balay #undef __FUNCT__ 15714a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1572be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1573a30f8f8cSSatish Balay { 1574a30f8f8cSSatish Balay PetscFunctionBegin; 1575a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1576a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1577a30f8f8cSSatish Balay PetscFunctionReturn(0); 1578a30f8f8cSSatish Balay } 1579a30f8f8cSSatish Balay EXTERN_C_END 1580a30f8f8cSSatish Balay 1581273d9f13SBarry Smith EXTERN_C_BEGIN 15824a2ae208SSatish Balay #undef __FUNCT__ 1583a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1584be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1585a23d5eceSKris Buschelman { 1586a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1587dfbe8321SBarry Smith PetscErrorCode ierr; 1588db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1589a23d5eceSKris Buschelman 1590a23d5eceSKris Buschelman PetscFunctionBegin; 1591db4efbfdSBarry Smith if (bs < 0){ 15927adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1593db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15948c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1595db4efbfdSBarry Smith bs = PetscAbs(bs); 1596db4efbfdSBarry Smith } 1597e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1598db4efbfdSBarry Smith bs = newbs; 1599a23d5eceSKris Buschelman 1600a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1601a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1602e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1603e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1604899cda47SBarry Smith 1605d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 160626283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 160726283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1608899cda47SBarry Smith 1609a23d5eceSKris Buschelman if (d_nnz) { 1610d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1611e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1612a23d5eceSKris Buschelman } 1613a23d5eceSKris Buschelman } 1614a23d5eceSKris Buschelman if (o_nnz) { 1615d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1616e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1617a23d5eceSKris Buschelman } 1618a23d5eceSKris Buschelman } 1619a23d5eceSKris Buschelman 1620a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1621d0f46423SBarry Smith mbs = B->rmap->n/bs; 1622d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1623d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1624e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1625a23d5eceSKris Buschelman } 1626a23d5eceSKris Buschelman 1627d0f46423SBarry Smith B->rmap->bs = bs; 1628a23d5eceSKris Buschelman b->bs2 = bs*bs; 1629a23d5eceSKris Buschelman b->mbs = mbs; 1630a23d5eceSKris Buschelman b->nbs = mbs; 1631a23d5eceSKris Buschelman b->Mbs = Mbs; 1632a23d5eceSKris Buschelman b->Nbs = Mbs; 1633a23d5eceSKris Buschelman 1634a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1635d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1636a23d5eceSKris Buschelman } 1637d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1638d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1639a23d5eceSKris Buschelman 1640d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1641d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1642a23d5eceSKris Buschelman 1643526dfc15SBarry Smith if (!B->preallocated) { 1644f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1645d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16469c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 164752e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1648f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1649d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16504aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 165152e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 165215bb146dSJed Brown ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1653526dfc15SBarry Smith } 1654a23d5eceSKris Buschelman 1655526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1656526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1657526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1658a23d5eceSKris Buschelman PetscFunctionReturn(0); 1659a23d5eceSKris Buschelman } 1660a23d5eceSKris Buschelman EXTERN_C_END 1661a23d5eceSKris Buschelman 16625c9eb25fSBarry Smith EXTERN_C_BEGIN 1663611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1664bccb9932SShri Abhyankar extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1665611f576cSBarry Smith #endif 1666611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 16675c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1668611f576cSBarry Smith #endif 1669b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1670b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1671b5e56a35SBarry Smith #endif 16725c9eb25fSBarry Smith EXTERN_C_END 16735c9eb25fSBarry Smith 16740bad9183SKris Buschelman /*MC 1675fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16760bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16770bad9183SKris Buschelman 16780bad9183SKris Buschelman Options Database Keys: 16790bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16800bad9183SKris Buschelman 16810bad9183SKris Buschelman Level: beginner 16820bad9183SKris Buschelman 16830bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16840bad9183SKris Buschelman M*/ 16850bad9183SKris Buschelman 1686a23d5eceSKris Buschelman EXTERN_C_BEGIN 1687a23d5eceSKris Buschelman #undef __FUNCT__ 16884a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1689be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1690b5df2d14SHong Zhang { 1691b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1692dfbe8321SBarry Smith PetscErrorCode ierr; 1693b5df2d14SHong Zhang PetscTruth flg; 1694b5df2d14SHong Zhang 1695b5df2d14SHong Zhang PetscFunctionBegin; 1696b5df2d14SHong Zhang 169738f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1698b0a32e0cSBarry Smith B->data = (void*)b; 1699b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1700b5df2d14SHong Zhang 1701b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1702b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1703b5df2d14SHong Zhang B->mapping = 0; 1704b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1705b5df2d14SHong Zhang 1706b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 17077adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 17087adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1709b5df2d14SHong Zhang 1710b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1711899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1712b5df2d14SHong Zhang 1713b5df2d14SHong Zhang /* build cache for off array entries formed */ 17147adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1715b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1716b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1717b5df2d14SHong Zhang b->garray = PETSC_NULL; 1718b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1719b5df2d14SHong Zhang 1720b5df2d14SHong Zhang /* stuff used in block assembly */ 1721b5df2d14SHong Zhang b->barray = 0; 1722b5df2d14SHong Zhang 1723b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1724b5df2d14SHong Zhang b->lvec = 0; 1725b5df2d14SHong Zhang b->Mvctx = 0; 172640781036SHong Zhang b->slvec0 = 0; 172740781036SHong Zhang b->slvec0b = 0; 172840781036SHong Zhang b->slvec1 = 0; 172940781036SHong Zhang b->slvec1a = 0; 173040781036SHong Zhang b->slvec1b = 0; 173140781036SHong Zhang b->sMvctx = 0; 1732b5df2d14SHong Zhang 1733b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1734b5df2d14SHong Zhang b->rowindices = 0; 1735b5df2d14SHong Zhang b->rowvalues = 0; 1736b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1737b5df2d14SHong Zhang 1738b5df2d14SHong Zhang /* hash table stuff */ 1739b5df2d14SHong Zhang b->ht = 0; 1740b5df2d14SHong Zhang b->hd = 0; 1741b5df2d14SHong Zhang b->ht_size = 0; 1742b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1743b5df2d14SHong Zhang b->ht_fact = 0; 1744b5df2d14SHong Zhang b->ht_total_ct = 0; 1745b5df2d14SHong Zhang b->ht_insert_ct = 0; 1746b5df2d14SHong Zhang 174759ffdab8SBarry Smith b->in_loc = 0; 174859ffdab8SBarry Smith b->v_loc = 0; 174959ffdab8SBarry Smith b->n_loc = 0; 17507adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17518c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1752b5df2d14SHong Zhang if (flg) { 1753f6275e2eSBarry Smith PetscReal fact = 1.39; 17544e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17558c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1756b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1757b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17581e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1759b5df2d14SHong Zhang } 17608c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17618c07d4e3SBarry Smith 1762b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1763ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1764b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1765b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1766b5e56a35SBarry Smith #endif 1767611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1768ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 1769bccb9932SShri Abhyankar "MatGetFactor_sbaij_mumps", 1770bccb9932SShri Abhyankar MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1771611f576cSBarry Smith #endif 1772611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1773ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 17745c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 17755c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1776611f576cSBarry Smith #endif 1777b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1778b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1779b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1780b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1781b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1782b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1783b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1784b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1785b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1786a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1787a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1788a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 178923ce1328SBarry Smith B->symmetric = PETSC_TRUE; 179023ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 179123ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 179223ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 179317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1794b5df2d14SHong Zhang PetscFunctionReturn(0); 1795b5df2d14SHong Zhang } 1796273d9f13SBarry Smith EXTERN_C_END 1797b5df2d14SHong Zhang 1798209238afSKris Buschelman /*MC 1799002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1800209238afSKris Buschelman 1801209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1802209238afSKris Buschelman and MATMPISBAIJ otherwise. 1803209238afSKris Buschelman 1804209238afSKris Buschelman Options Database Keys: 1805209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1806209238afSKris Buschelman 1807209238afSKris Buschelman Level: beginner 1808209238afSKris Buschelman 1809209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1810209238afSKris Buschelman M*/ 1811209238afSKris Buschelman 1812209238afSKris Buschelman EXTERN_C_BEGIN 1813209238afSKris Buschelman #undef __FUNCT__ 1814209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1815be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1816dfbe8321SBarry Smith { 18176849ba73SBarry Smith PetscErrorCode ierr; 18181302d50aSBarry Smith PetscMPIInt size; 1819209238afSKris Buschelman 1820209238afSKris Buschelman PetscFunctionBegin; 18217adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1822209238afSKris Buschelman if (size == 1) { 1823209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1824209238afSKris Buschelman } else { 1825209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1826209238afSKris Buschelman } 1827209238afSKris Buschelman PetscFunctionReturn(0); 1828209238afSKris Buschelman } 1829209238afSKris Buschelman EXTERN_C_END 1830209238afSKris Buschelman 18314a2ae208SSatish Balay #undef __FUNCT__ 18324a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1833b5df2d14SHong Zhang /*@C 1834b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1835b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1836b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1837b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1838b5df2d14SHong Zhang 1839b5df2d14SHong Zhang Collective on Mat 1840b5df2d14SHong Zhang 1841b5df2d14SHong Zhang Input Parameters: 1842b5df2d14SHong Zhang + A - the matrix 1843b5df2d14SHong Zhang . bs - size of blockk 1844b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1845b5df2d14SHong Zhang submatrix (same for all local rows) 1846b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18476d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18486d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18496d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1850b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1851b5df2d14SHong Zhang submatrix (same for all local rows). 1852b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1853b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1854b5df2d14SHong Zhang each block row) or PETSC_NULL. 1855b5df2d14SHong Zhang 1856b5df2d14SHong Zhang 1857b5df2d14SHong Zhang Options Database Keys: 1858b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1859b5df2d14SHong Zhang block calculations (much slower) 1860b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1861b5df2d14SHong Zhang 1862b5df2d14SHong Zhang Notes: 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1865b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1866b5df2d14SHong Zhang 186749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 186849a6f317SBarry Smith 1869b5df2d14SHong Zhang Storage Information: 1870b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1871b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1872b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1873b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1874b5df2d14SHong Zhang 1875b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1876b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1877b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1878b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1879b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1880b5df2d14SHong Zhang 1881aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1882aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1883aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1884aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1885aa95bbe8SBarry Smith 1886b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1887b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1888b5df2d14SHong Zhang 1889b5df2d14SHong Zhang .vb 1890b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1891b5df2d14SHong Zhang ------------------- 1892b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1893b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1894b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1895b5df2d14SHong Zhang ------------------- 1896b5df2d14SHong Zhang .ve 1897b5df2d14SHong Zhang 1898b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1899b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19006d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19016d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1902b5df2d14SHong Zhang 19036d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19046d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1905b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1906b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1907b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1908b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1909b5df2d14SHong Zhang matrices. 1910b5df2d14SHong Zhang 1911b5df2d14SHong Zhang Level: intermediate 1912b5df2d14SHong Zhang 1913b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1914b5df2d14SHong Zhang 1915b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1916b5df2d14SHong Zhang @*/ 1917be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1918b5df2d14SHong Zhang { 19191302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1920b5df2d14SHong Zhang 1921b5df2d14SHong Zhang PetscFunctionBegin; 1922a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1923a23d5eceSKris Buschelman if (f) { 1924a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1925b5df2d14SHong Zhang } 1926b5df2d14SHong Zhang PetscFunctionReturn(0); 1927b5df2d14SHong Zhang } 1928b5df2d14SHong Zhang 19294a2ae208SSatish Balay #undef __FUNCT__ 19304a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1931a30f8f8cSSatish Balay /*@C 1932a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1933a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1934a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1935a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1936a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1937a30f8f8cSSatish Balay 1938a30f8f8cSSatish Balay Collective on MPI_Comm 1939a30f8f8cSSatish Balay 1940a30f8f8cSSatish Balay Input Parameters: 1941a30f8f8cSSatish Balay + comm - MPI communicator 1942a30f8f8cSSatish Balay . bs - size of blockk 1943a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1944a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1945a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1946a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1947a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1948a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1949a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1950a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1951a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1952a30f8f8cSSatish Balay submatrix (same for all local rows) 1953a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19546d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19556d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19566d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1957a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1958a30f8f8cSSatish Balay submatrix (same for all local rows). 1959a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1960a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1961a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1962a30f8f8cSSatish Balay 1963a30f8f8cSSatish Balay Output Parameter: 1964a30f8f8cSSatish Balay . A - the matrix 1965a30f8f8cSSatish Balay 1966a30f8f8cSSatish Balay Options Database Keys: 1967a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1968a30f8f8cSSatish Balay block calculations (much slower) 1969a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1970a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1971a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1972a30f8f8cSSatish Balay 1973175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1974ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1975175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1976175b88e8SBarry Smith 1977a30f8f8cSSatish Balay Notes: 1978d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19796d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1980d1be2dadSMatthew Knepley 1981a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1982a30f8f8cSSatish Balay (possibly both). 1983a30f8f8cSSatish Balay 1984a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1985a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1986a30f8f8cSSatish Balay 198749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 198849a6f317SBarry Smith 1989a30f8f8cSSatish Balay Storage Information: 1990a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1991a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1992a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1993a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1996a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1997a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1998a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1999a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2000a30f8f8cSSatish Balay 2001a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2002a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2003a30f8f8cSSatish Balay 2004a30f8f8cSSatish Balay .vb 2005a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2006a30f8f8cSSatish Balay ------------------- 2007a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2008a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2009a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2010a30f8f8cSSatish Balay ------------------- 2011a30f8f8cSSatish Balay .ve 2012a30f8f8cSSatish Balay 2013a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2014a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20156d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20166d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2017a30f8f8cSSatish Balay 20186d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20196d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2020a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2021a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2022a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2023a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2024a30f8f8cSSatish Balay matrices. 2025a30f8f8cSSatish Balay 2026a30f8f8cSSatish Balay Level: intermediate 2027a30f8f8cSSatish Balay 2028a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2029a30f8f8cSSatish Balay 2030a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2031a30f8f8cSSatish Balay @*/ 2032a30f8f8cSSatish Balay 2033be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2034a30f8f8cSSatish Balay { 20356849ba73SBarry Smith PetscErrorCode ierr; 20361302d50aSBarry Smith PetscMPIInt size; 2037a30f8f8cSSatish Balay 2038a30f8f8cSSatish Balay PetscFunctionBegin; 2039f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2040f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2041273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2042273d9f13SBarry Smith if (size > 1) { 2043b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2044b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2045273d9f13SBarry Smith } else { 2046273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2047273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2048273d9f13SBarry Smith } 2049a30f8f8cSSatish Balay PetscFunctionReturn(0); 2050a30f8f8cSSatish Balay } 2051a30f8f8cSSatish Balay 2052a30f8f8cSSatish Balay 20534a2ae208SSatish Balay #undef __FUNCT__ 20544a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2056a30f8f8cSSatish Balay { 2057a30f8f8cSSatish Balay Mat mat; 2058a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2059dfbe8321SBarry Smith PetscErrorCode ierr; 2060d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2061387bc808SHong Zhang PetscScalar *array; 2062a30f8f8cSSatish Balay 2063a30f8f8cSSatish Balay PetscFunctionBegin; 2064a30f8f8cSSatish Balay *newmat = 0; 20657adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2066d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20677adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20681d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 206926283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 207026283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2071e1b6402fSHong Zhang 2072d5f3da31SBarry Smith mat->factortype = matin->factortype; 2073273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 207482327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20757fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20767fff6886SHong Zhang 2077b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2078a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2079a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2080a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2081a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2082a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2083a30f8f8cSSatish Balay 2084899cda47SBarry Smith 2085a30f8f8cSSatish Balay a->size = oldmat->size; 2086a30f8f8cSSatish Balay a->rank = oldmat->rank; 2087a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2088a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2089a30f8f8cSSatish Balay a->rowindices = 0; 2090a30f8f8cSSatish Balay a->rowvalues = 0; 2091a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2092a30f8f8cSSatish Balay a->barray = 0; 2093899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2094899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2095899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2096899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2097a30f8f8cSSatish Balay 2098a30f8f8cSSatish Balay /* hash table stuff */ 2099a30f8f8cSSatish Balay a->ht = 0; 2100a30f8f8cSSatish Balay a->hd = 0; 2101a30f8f8cSSatish Balay a->ht_size = 0; 2102a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2103a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2104a30f8f8cSSatish Balay a->ht_total_ct = 0; 2105a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2106a30f8f8cSSatish Balay 2107899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2108a30f8f8cSSatish Balay if (oldmat->colmap) { 2109a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2110a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2111a30f8f8cSSatish Balay #else 21121302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 211352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21141302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2115a30f8f8cSSatish Balay #endif 2116a30f8f8cSSatish Balay } else a->colmap = 0; 2117387bc808SHong Zhang 2118a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21191302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 212052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21211302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2122a30f8f8cSSatish Balay } else a->garray = 0; 2123a30f8f8cSSatish Balay 2124533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2125a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 212652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2127a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 212852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 212982327fa8SHong Zhang 213082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 213152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 213352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2134387bc808SHong Zhang 2135387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21361ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2137387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2138387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21391ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21401ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2141387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21421ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 214352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 214452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 214552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 214652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 214752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2148387bc808SHong Zhang 2149387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2150387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2151387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 215252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 215382327fa8SHong Zhang 2154a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 215552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 215752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 21587adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2159a30f8f8cSSatish Balay *newmat = mat; 2160a30f8f8cSSatish Balay PetscFunctionReturn(0); 2161a30f8f8cSSatish Balay } 2162a30f8f8cSSatish Balay 21634a2ae208SSatish Balay #undef __FUNCT__ 21645bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2165112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 216695936485SShri Abhyankar { 216795936485SShri Abhyankar PetscErrorCode ierr; 216895936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 216995936485SShri Abhyankar PetscScalar *vals,*buf; 217095936485SShri Abhyankar MPI_Comm comm = ((PetscObject)viewer)->comm; 217195936485SShri Abhyankar MPI_Status status; 217295936485SShri Abhyankar PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 217395936485SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 217495936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 217595936485SShri Abhyankar PetscInt bs=1,Mbs,mbs,extra_rows; 217695936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 217795936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 217895936485SShri Abhyankar int fd; 217995936485SShri Abhyankar 218095936485SShri Abhyankar PetscFunctionBegin; 218195936485SShri Abhyankar ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 218295936485SShri Abhyankar ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 218395936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 218495936485SShri Abhyankar 218595936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 218695936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 218795936485SShri Abhyankar if (!rank) { 218895936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 218995936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 219095936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 219195936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 219295936485SShri Abhyankar } 219395936485SShri Abhyankar 219495936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 219595936485SShri Abhyankar 219695936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 219795936485SShri Abhyankar M = header[1]; N = header[2]; 219895936485SShri Abhyankar 219995936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 220095936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 220195936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 220295936485SShri Abhyankar 220395936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 220495936485SShri Abhyankar if (sizesset) { 220595936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 220695936485SShri Abhyankar } 2207abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2208abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 220995936485SShri Abhyankar 221095936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 221195936485SShri Abhyankar 221295936485SShri Abhyankar /* 221395936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 221495936485SShri Abhyankar divisible by the blocksize 221595936485SShri Abhyankar */ 221695936485SShri Abhyankar Mbs = M/bs; 221795936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 221895936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 221995936485SShri Abhyankar else Mbs++; 222095936485SShri Abhyankar if (extra_rows &&!rank) { 222195936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 222295936485SShri Abhyankar } 222395936485SShri Abhyankar 222495936485SShri Abhyankar /* determine ownership of all rows */ 222595936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 222695936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 222795936485SShri Abhyankar m = mbs*bs; 222895936485SShri Abhyankar } else { /* User Set */ 222995936485SShri Abhyankar m = newmat->rmap->n; 223095936485SShri Abhyankar mbs = m/bs; 223195936485SShri Abhyankar } 223295936485SShri Abhyankar ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 223395936485SShri Abhyankar mmbs = PetscMPIIntCast(mbs); 223495936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 223595936485SShri Abhyankar rowners[0] = 0; 223695936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 223795936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 223895936485SShri Abhyankar rstart = rowners[rank]; 223995936485SShri Abhyankar rend = rowners[rank+1]; 224095936485SShri Abhyankar 224195936485SShri Abhyankar /* distribute row lengths to all processors */ 224295936485SShri Abhyankar ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 224395936485SShri Abhyankar if (!rank) { 224495936485SShri Abhyankar ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 224595936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 224695936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 224795936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 224895936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 224995936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 225095936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 225195936485SShri Abhyankar } else { 225295936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 225395936485SShri Abhyankar } 225495936485SShri Abhyankar 225595936485SShri Abhyankar if (!rank) { /* procs[0] */ 225695936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 225795936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 225895936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 225995936485SShri Abhyankar for (i=0; i<size; i++) { 226095936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 226195936485SShri Abhyankar procsnz[i] += rowlengths[j]; 226295936485SShri Abhyankar } 226395936485SShri Abhyankar } 226495936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 226595936485SShri Abhyankar 226695936485SShri Abhyankar /* determine max buffer needed and allocate it */ 226795936485SShri Abhyankar maxnz = 0; 226895936485SShri Abhyankar for (i=0; i<size; i++) { 226995936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 227095936485SShri Abhyankar } 227195936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 227295936485SShri Abhyankar 227395936485SShri Abhyankar /* read in my part of the matrix column indices */ 227495936485SShri Abhyankar nz = procsnz[0]; 227595936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 227695936485SShri Abhyankar mycols = ibuf; 227795936485SShri Abhyankar if (size == 1) nz -= extra_rows; 227895936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 227995936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 228095936485SShri Abhyankar 228195936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 228295936485SShri Abhyankar for (i=1; i<size-1; i++) { 228395936485SShri Abhyankar nz = procsnz[i]; 228495936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 228595936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 228695936485SShri Abhyankar } 228795936485SShri Abhyankar /* read in the stuff for the last proc */ 228895936485SShri Abhyankar if (size != 1) { 228995936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 229095936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 229195936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 229295936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 229395936485SShri Abhyankar } 229495936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 229595936485SShri Abhyankar } else { /* procs[i], i>0 */ 229695936485SShri Abhyankar /* determine buffer space needed for message */ 229795936485SShri Abhyankar nz = 0; 229895936485SShri Abhyankar for (i=0; i<m; i++) { 229995936485SShri Abhyankar nz += locrowlens[i]; 230095936485SShri Abhyankar } 230195936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 230295936485SShri Abhyankar mycols = ibuf; 230395936485SShri Abhyankar /* receive message of column indices*/ 230495936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 230595936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 230695936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 230795936485SShri Abhyankar } 230895936485SShri Abhyankar 230995936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 231095936485SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 231195936485SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 231295936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 231395936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 231495936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 231595936485SShri Abhyankar rowcount = 0; 231695936485SShri Abhyankar nzcount = 0; 231795936485SShri Abhyankar for (i=0; i<mbs; i++) { 231895936485SShri Abhyankar dcount = 0; 231995936485SShri Abhyankar odcount = 0; 232095936485SShri Abhyankar for (j=0; j<bs; j++) { 232195936485SShri Abhyankar kmax = locrowlens[rowcount]; 232295936485SShri Abhyankar for (k=0; k<kmax; k++) { 232395936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 232495936485SShri Abhyankar if (!mask[tmp]) { 232595936485SShri Abhyankar mask[tmp] = 1; 232695936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 232795936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 232895936485SShri Abhyankar } 232995936485SShri Abhyankar } 233095936485SShri Abhyankar rowcount++; 233195936485SShri Abhyankar } 233295936485SShri Abhyankar 233395936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 233495936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 233595936485SShri Abhyankar 233695936485SShri Abhyankar /* zero out the mask elements we set */ 233795936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 233895936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 233995936485SShri Abhyankar } 234095936485SShri Abhyankar if (!sizesset) { 234195936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 234295936485SShri Abhyankar } 234395936485SShri Abhyankar ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 234495936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 234595936485SShri Abhyankar 234695936485SShri Abhyankar if (!rank) { 234795936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 234895936485SShri Abhyankar /* read in my part of the matrix numerical values */ 234995936485SShri Abhyankar nz = procsnz[0]; 235095936485SShri Abhyankar vals = buf; 235195936485SShri Abhyankar mycols = ibuf; 235295936485SShri Abhyankar if (size == 1) nz -= extra_rows; 235395936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 235495936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 235595936485SShri Abhyankar 235695936485SShri Abhyankar /* insert into matrix */ 235795936485SShri Abhyankar jj = rstart*bs; 235895936485SShri Abhyankar for (i=0; i<m; i++) { 235995936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 236095936485SShri Abhyankar mycols += locrowlens[i]; 236195936485SShri Abhyankar vals += locrowlens[i]; 236295936485SShri Abhyankar jj++; 236395936485SShri Abhyankar } 236495936485SShri Abhyankar 236595936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 236695936485SShri Abhyankar for (i=1; i<size-1; i++) { 236795936485SShri Abhyankar nz = procsnz[i]; 236895936485SShri Abhyankar vals = buf; 236995936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 237095936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 237195936485SShri Abhyankar } 237295936485SShri Abhyankar /* the last proc */ 237395936485SShri Abhyankar if (size != 1){ 237495936485SShri Abhyankar nz = procsnz[i] - extra_rows; 237595936485SShri Abhyankar vals = buf; 237695936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 237795936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 237895936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 237995936485SShri Abhyankar } 238095936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 238195936485SShri Abhyankar 238295936485SShri Abhyankar } else { 238395936485SShri Abhyankar /* receive numeric values */ 238495936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 238595936485SShri Abhyankar 238695936485SShri Abhyankar /* receive message of values*/ 238795936485SShri Abhyankar vals = buf; 238895936485SShri Abhyankar mycols = ibuf; 238995936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 239095936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 239195936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 239295936485SShri Abhyankar 239395936485SShri Abhyankar /* insert into matrix */ 239495936485SShri Abhyankar jj = rstart*bs; 239595936485SShri Abhyankar for (i=0; i<m; i++) { 239695936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 239795936485SShri Abhyankar mycols += locrowlens[i]; 239895936485SShri Abhyankar vals += locrowlens[i]; 239995936485SShri Abhyankar jj++; 240095936485SShri Abhyankar } 240195936485SShri Abhyankar } 240295936485SShri Abhyankar 240395936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 240495936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 240595936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 240695936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 240795936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 240895936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 240995936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 241095936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 241195936485SShri Abhyankar PetscFunctionReturn(0); 241295936485SShri Abhyankar } 241395936485SShri Abhyankar 241495936485SShri Abhyankar #undef __FUNCT__ 24154a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2416dcf5cc72SBarry Smith /*XXXXX@ 2417a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2418a30f8f8cSSatish Balay 2419a30f8f8cSSatish Balay Input Parameters: 2420a30f8f8cSSatish Balay . mat - the matrix 2421a30f8f8cSSatish Balay . fact - factor 2422a30f8f8cSSatish Balay 2423c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2424a30f8f8cSSatish Balay 2425a30f8f8cSSatish Balay Level: advanced 2426a30f8f8cSSatish Balay 2427a30f8f8cSSatish Balay Notes: 2428a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2429a30f8f8cSSatish Balay 2430a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2431a30f8f8cSSatish Balay 2432a30f8f8cSSatish Balay .seealso: MatSetOption() 2433dcf5cc72SBarry Smith @XXXXX*/ 2434dcf5cc72SBarry Smith 243524d5174aSHong Zhang 24364a2ae208SSatish Balay #undef __FUNCT__ 2437985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2438985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 243924d5174aSHong Zhang { 244024d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2441f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2442ca54ac64SHong Zhang PetscReal atmp; 244387828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2444dfbe8321SBarry Smith PetscErrorCode ierr; 24451302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24461302d50aSBarry Smith PetscMPIInt rank,size; 24471302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 244887828ca2SBarry Smith PetscScalar *va; 24498a1c53f2SBarry Smith MatScalar *ba; 2450f4c0e9e4SHong Zhang MPI_Status stat; 245124d5174aSHong Zhang 245224d5174aSHong Zhang PetscFunctionBegin; 2453e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2454985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24551ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2456f4c0e9e4SHong Zhang 24577adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 24587adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2459f4c0e9e4SHong Zhang 2460d0f46423SBarry Smith bs = A->rmap->bs; 2461f4c0e9e4SHong Zhang mbs = a->mbs; 2462f4c0e9e4SHong Zhang Mbs = a->Mbs; 2463f4c0e9e4SHong Zhang ba = b->a; 2464f4c0e9e4SHong Zhang bi = b->i; 2465f4c0e9e4SHong Zhang bj = b->j; 2466f4c0e9e4SHong Zhang 2467f4c0e9e4SHong Zhang /* find ownerships */ 2468d0f46423SBarry Smith rowners_bs = A->rmap->range; 2469f4c0e9e4SHong Zhang 2470f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 247182502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2472ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2473f4c0e9e4SHong Zhang 2474f4c0e9e4SHong Zhang /* row_max for B */ 2475b8475685SHong Zhang if (rank != size-1){ 2476f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2477f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2478f4c0e9e4SHong Zhang brow = bs*i; 2479f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2480f4c0e9e4SHong Zhang bcol = bs*(*bj); 2481f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2482ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 248304d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2484f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2485f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2486ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2487ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2488f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2489f4c0e9e4SHong Zhang } 2490f4c0e9e4SHong Zhang } 2491f4c0e9e4SHong Zhang bj++; 2492f4c0e9e4SHong Zhang } 2493f4c0e9e4SHong Zhang } 2494f4c0e9e4SHong Zhang 2495f4c0e9e4SHong Zhang /* send values to its owners */ 2496f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2497f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2498ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24997adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2500ca54ac64SHong Zhang } 2501f4c0e9e4SHong Zhang } 2502f4c0e9e4SHong Zhang 2503f4c0e9e4SHong Zhang /* receive values */ 2504ca54ac64SHong Zhang if (rank){ 2505f4c0e9e4SHong Zhang rvalues = work; 2506ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2507f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 25087adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2509f4c0e9e4SHong Zhang /* process values */ 2510f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2511ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2512f4c0e9e4SHong Zhang } 2513f4c0e9e4SHong Zhang } 2514ca54ac64SHong Zhang } 2515f4c0e9e4SHong Zhang 25161ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2517ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 251824d5174aSHong Zhang PetscFunctionReturn(0); 251924d5174aSHong Zhang } 25202798e883SHong Zhang 25212798e883SHong Zhang #undef __FUNCT__ 252241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 252341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25242798e883SHong Zhang { 25252798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2526dfbe8321SBarry Smith PetscErrorCode ierr; 2527d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25283649974fSBarry Smith PetscScalar *x,*ptr,*from; 2529ffe4fb16SHong Zhang Vec bb1; 25303649974fSBarry Smith const PetscScalar *b; 2531ffe4fb16SHong Zhang 2532ffe4fb16SHong Zhang PetscFunctionBegin; 2533e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2534e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2535ffe4fb16SHong Zhang 2536a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 253741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2538a2b30743SBarry Smith PetscFunctionReturn(0); 2539a2b30743SBarry Smith } 2540a2b30743SBarry Smith 2541ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2542ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 254341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2544ffe4fb16SHong Zhang its--; 2545ffe4fb16SHong Zhang } 2546ffe4fb16SHong Zhang 2547ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2548ffe4fb16SHong Zhang while (its--){ 2549ffe4fb16SHong Zhang 2550ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2551ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2552ffe4fb16SHong Zhang 2553ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25541ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25551ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2556ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25571ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2558ffe4fb16SHong Zhang 2559efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2560ffe4fb16SHong Zhang 2561ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25621ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25633649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2564ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25651ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2566ffe4fb16SHong Zhang 2567ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2568fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2569ffe4fb16SHong Zhang 2570ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25711ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2572a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2573ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2574ffe4fb16SHong Zhang 2575ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2576ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2577ffe4fb16SHong Zhang 2578ffe4fb16SHong Zhang /* local diagonal sweep */ 257941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2580ffe4fb16SHong Zhang } 2581ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2582fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 258341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2584fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 258541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2586fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2587fa22f6d0SBarry Smith Vec xx1; 2588fa22f6d0SBarry Smith PetscTruth hasop; 258920f1ed55SBarry Smith const PetscScalar *diag; 2590887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 259120f1ed55SBarry Smith PetscInt i,n; 2592fa22f6d0SBarry Smith 2593fa22f6d0SBarry Smith if (!mat->xx1) { 2594fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2595fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2596fa22f6d0SBarry Smith } 2597fa22f6d0SBarry Smith xx1 = mat->xx1; 2598fa22f6d0SBarry Smith bb1 = mat->bb1; 2599fa22f6d0SBarry Smith 260041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2601fa22f6d0SBarry Smith 2602fa22f6d0SBarry Smith if (!mat->diag) { 2603effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2604fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2605fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2606fa22f6d0SBarry Smith } 2607fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2608fa22f6d0SBarry Smith 2609fa22f6d0SBarry Smith if (hasop) { 2610fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2611887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 261220f1ed55SBarry Smith } else { 261320f1ed55SBarry Smith /* 261420f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 261520f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2616887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 261720f1ed55SBarry Smith */ 261820f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26193649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26203649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 262120f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 262220f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2623887ee2caSBarry Smith if (omega == 1.0) { 262420f1ed55SBarry Smith for (i=0; i<n; i++) { 262520f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 262620f1ed55SBarry Smith } 262720f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2628887ee2caSBarry Smith } else { 2629887ee2caSBarry Smith for (i=0; i<n; i++) { 2630887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2631887ee2caSBarry Smith } 2632887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2633887ee2caSBarry Smith } 263420f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26353649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26363649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 263720f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 263820f1ed55SBarry Smith } 2639fa22f6d0SBarry Smith 2640fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2641fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2642fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2643fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2644fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2645fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2646fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2647fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2648fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2649fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2650effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2651fa22f6d0SBarry Smith 2652fa22f6d0SBarry Smith /* local sweep */ 265341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2654fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2655ffe4fb16SHong Zhang } else { 2656e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2657ffe4fb16SHong Zhang } 2658ffe4fb16SHong Zhang PetscFunctionReturn(0); 2659ffe4fb16SHong Zhang } 2660ffe4fb16SHong Zhang 2661ffe4fb16SHong Zhang #undef __FUNCT__ 266241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 266341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2664ffe4fb16SHong Zhang { 2665ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2666dfbe8321SBarry Smith PetscErrorCode ierr; 26672798e883SHong Zhang Vec lvec1,bb1; 26682798e883SHong Zhang 26692798e883SHong Zhang PetscFunctionBegin; 2670e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2671e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26722798e883SHong Zhang 2673c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 26742798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 267541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26762798e883SHong Zhang its--; 26772798e883SHong Zhang } 26782798e883SHong Zhang 26792798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26802798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26812798e883SHong Zhang while (its--){ 2682ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26832798e883SHong Zhang 26842798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26852798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2686efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26872798e883SHong Zhang 2688ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26892798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2690ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26912798e883SHong Zhang 26922798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2693efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26942798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26952798e883SHong Zhang 2696ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26972798e883SHong Zhang 2698c14dc6b6SHong Zhang /* diagonal sweep */ 269941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27002798e883SHong Zhang } 27012798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 27022798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2703c14dc6b6SHong Zhang } else { 2704e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2705c14dc6b6SHong Zhang } 27062798e883SHong Zhang PetscFunctionReturn(0); 27072798e883SHong Zhang } 27082798e883SHong Zhang 2709