xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 4cb17eb5d24fda53f1a75322daaa24f590374b40)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6f3da1532SBarry Smith #include "petscblaslapack.h"
7a30f8f8cSSatish Balay 
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay EXTERN_C_BEGIN
254a2ae208SSatish Balay #undef __FUNCT__
264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
28a30f8f8cSSatish Balay {
29f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
30dfbe8321SBarry Smith   PetscErrorCode ierr;
31a30f8f8cSSatish Balay 
32a30f8f8cSSatish Balay   PetscFunctionBegin;
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   PetscFunctionReturn(0);
36a30f8f8cSSatish Balay }
37a30f8f8cSSatish Balay EXTERN_C_END
38a30f8f8cSSatish Balay 
39a30f8f8cSSatish Balay EXTERN_C_BEGIN
404a2ae208SSatish Balay #undef __FUNCT__
414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
43a30f8f8cSSatish Balay {
44f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
45dfbe8321SBarry Smith   PetscErrorCode ierr;
46a30f8f8cSSatish Balay 
47a30f8f8cSSatish Balay   PetscFunctionBegin;
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
50a30f8f8cSSatish Balay   PetscFunctionReturn(0);
51a30f8f8cSSatish Balay }
52a30f8f8cSSatish Balay EXTERN_C_END
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay 
55a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
56a30f8f8cSSatish Balay { \
57a30f8f8cSSatish Balay  \
58a30f8f8cSSatish Balay     brow = row/bs;  \
59a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
60a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
61a30f8f8cSSatish Balay       bcol = col/bs; \
62a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
63a30f8f8cSSatish Balay       low = 0; high = nrow; \
64a30f8f8cSSatish Balay       while (high-low > 3) { \
65a30f8f8cSSatish Balay         t = (low+high)/2; \
66a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
67a30f8f8cSSatish Balay         else              low  = t; \
68a30f8f8cSSatish Balay       } \
69a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
70a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
71a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
72a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
73a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
74a30f8f8cSSatish Balay           else                    *bap  = value;  \
75a30f8f8cSSatish Balay           goto a_noinsert; \
76a30f8f8cSSatish Balay         } \
77a30f8f8cSSatish Balay       } \
78a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
79e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
80fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
81a30f8f8cSSatish Balay       N = nrow++ - 1;  \
82a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
83a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
84a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
85a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
86a30f8f8cSSatish Balay       } \
87a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
88a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
89a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
90a30f8f8cSSatish Balay       a_noinsert:; \
91a30f8f8cSSatish Balay     ailen[brow] = nrow; \
92a30f8f8cSSatish Balay }
93e5e170daSBarry Smith 
94a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
95a30f8f8cSSatish Balay { \
96a30f8f8cSSatish Balay     brow = row/bs;  \
97a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
98a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
99a30f8f8cSSatish Balay       bcol = col/bs; \
100a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
101a30f8f8cSSatish Balay       low = 0; high = nrow; \
102a30f8f8cSSatish Balay       while (high-low > 3) { \
103a30f8f8cSSatish Balay         t = (low+high)/2; \
104a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
105a30f8f8cSSatish Balay         else              low  = t; \
106a30f8f8cSSatish Balay       } \
107a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
108a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
109a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
110a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
111a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
112a30f8f8cSSatish Balay           else                    *bap  = value;  \
113a30f8f8cSSatish Balay           goto b_noinsert; \
114a30f8f8cSSatish Balay         } \
115a30f8f8cSSatish Balay       } \
116a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
117e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
118fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
119a30f8f8cSSatish Balay       N = nrow++ - 1;  \
120a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
121a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
122a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
123a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
124a30f8f8cSSatish Balay       } \
125a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
126a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
127a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
128a30f8f8cSSatish Balay       b_noinsert:; \
129a30f8f8cSSatish Balay     bilen[brow] = nrow; \
130a30f8f8cSSatish Balay }
131a30f8f8cSSatish Balay 
132a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
133a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
134a30f8f8cSSatish Balay */
1354a2ae208SSatish Balay #undef __FUNCT__
136dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
137dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
138a30f8f8cSSatish Balay {
139a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
140a30f8f8cSSatish Balay   MatScalar      value;
141b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
142dfbe8321SBarry Smith   PetscErrorCode ierr;
1431302d50aSBarry Smith   PetscInt       i,j,row,col;
144d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
145d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
146d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
147a30f8f8cSSatish Balay 
148a30f8f8cSSatish Balay   /* Some Variables required in the macro */
149a30f8f8cSSatish Balay   Mat            A = baij->A;
150a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1511302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
152a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
153a30f8f8cSSatish Balay 
154a30f8f8cSSatish Balay   Mat            B = baij->B;
155a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1561302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
157a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
158a30f8f8cSSatish Balay 
1591302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1601302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
161a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
162a30f8f8cSSatish Balay 
163a30f8f8cSSatish Balay   /* for stash */
164910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
165910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
166a30f8f8cSSatish Balay 
167a30f8f8cSSatish Balay   PetscFunctionBegin;
16871fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
169a30f8f8cSSatish Balay   if (!baij->donotstash){
17059ffdab8SBarry Smith     if (n > baij->n_loc) {
17159ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17259ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       baij->n_loc = n;
17659ffdab8SBarry Smith     }
17759ffdab8SBarry Smith     in_loc = baij->in_loc;
17859ffdab8SBarry Smith     v_loc  = baij->v_loc;
179a30f8f8cSSatish Balay   }
180a30f8f8cSSatish Balay 
181a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
182a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
184e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
185a30f8f8cSSatish Balay #endif
186a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
187a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
188a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18901b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19001b2bd88SHong Zhang           if (a->ignore_ltriangular){
19101b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19201b2bd88SHong Zhang           } else {
193e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19401b2bd88SHong Zhang           }
19501b2bd88SHong Zhang         }
196a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
197a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
198a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
199a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
200a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
201a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
202a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
203a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2042515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
205cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
206a30f8f8cSSatish Balay #endif
207a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
208a30f8f8cSSatish Balay           if (mat->was_assembled) {
209a30f8f8cSSatish Balay             if (!baij->colmap) {
210653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
211a30f8f8cSSatish Balay             }
212a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
213a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21471730473SSatish Balay             col  = col - 1;
215a30f8f8cSSatish Balay #else
21671730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
217a30f8f8cSSatish Balay #endif
218a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
219a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
220a30f8f8cSSatish Balay               col =  in[j];
221a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
222a30f8f8cSSatish Balay               B = baij->B;
223a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
224a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
225a30f8f8cSSatish Balay               ba=b->a;
22671730473SSatish Balay             } else col += in[j]%bs;
227a30f8f8cSSatish Balay           } else col = in[j];
228a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
229a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
230a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
231a30f8f8cSSatish Balay         }
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     } else {  /* off processor entry */
234*4cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
235a30f8f8cSSatish Balay       if (!baij->donotstash) {
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
261f3f98c53SJed Brown   PetscTruth      roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
281e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
286f3f98c53SJed Brown         if (im[i] > in[j]) {
287f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
288e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
289f3f98c53SJed Brown         }
2900880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2910880e062SHong Zhang         if ((roworiented) && (n == 1)) {
292f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2930880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
294f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2950880e062SHong Zhang         } else { /* Here a copy is required */
2960880e062SHong Zhang           if (roworiented) {
2970880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2980880e062SHong Zhang           } else {
2990880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3000880e062SHong Zhang           }
3010880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3020880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3030880e062SHong Zhang               *barray++  = *value++;
3040880e062SHong Zhang             }
3050880e062SHong Zhang           }
3060880e062SHong Zhang           barray -=bs2;
3070880e062SHong Zhang         }
3080880e062SHong Zhang 
3090880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3100880e062SHong Zhang           col  = in[j] - cstart;
3110880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3120880e062SHong Zhang         }
3130880e062SHong Zhang         else if (in[j] < 0) continue;
3142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
315cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3160880e062SHong Zhang #endif
3170880e062SHong Zhang         else {
3180880e062SHong Zhang           if (mat->was_assembled) {
3190880e062SHong Zhang             if (!baij->colmap) {
320653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3210880e062SHong Zhang             }
3220880e062SHong Zhang 
3232515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3240880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3251302d50aSBarry Smith             { PetscInt data;
3260880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
327e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3280880e062SHong Zhang             }
3290880e062SHong Zhang #else
330e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #endif
3330880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3340880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3350880e062SHong Zhang             col  = (col - 1)/bs;
3360880e062SHong Zhang #else
3370880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3380880e062SHong Zhang #endif
3390880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3400880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3410880e062SHong Zhang               col =  in[j];
3420880e062SHong Zhang             }
3430880e062SHong Zhang           }
3440880e062SHong Zhang           else col = in[j];
345e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3460880e062SHong Zhang         }
3470880e062SHong Zhang       }
3480880e062SHong Zhang     } else {
349*4cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3500880e062SHong Zhang       if (!baij->donotstash) {
3510880e062SHong Zhang         if (roworiented) {
3520880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         } else {
3540880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3550880e062SHong Zhang         }
3560880e062SHong Zhang       }
3570880e062SHong Zhang     }
3580880e062SHong Zhang   }
3590880e062SHong Zhang   PetscFunctionReturn(0);
360a30f8f8cSSatish Balay }
361a30f8f8cSSatish Balay 
3624a2ae208SSatish Balay #undef __FUNCT__
3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
365a30f8f8cSSatish Balay {
366f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3676849ba73SBarry Smith   PetscErrorCode ierr;
368d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
369d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
370a30f8f8cSSatish Balay 
371a30f8f8cSSatish Balay   PetscFunctionBegin;
372a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
373e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
374e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
375a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
376a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
377a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
378e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
379e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
380a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
381a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
382c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
383a30f8f8cSSatish Balay         } else {
384a30f8f8cSSatish Balay           if (!baij->colmap) {
385653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
386a30f8f8cSSatish Balay           }
387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
388a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
389a30f8f8cSSatish Balay           data --;
390a30f8f8cSSatish Balay #else
391a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
392a30f8f8cSSatish Balay #endif
393a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
394a30f8f8cSSatish Balay           else {
395a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
396e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
397a30f8f8cSSatish Balay           }
398a30f8f8cSSatish Balay         }
399a30f8f8cSSatish Balay       }
400a30f8f8cSSatish Balay     } else {
401e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
402a30f8f8cSSatish Balay     }
403a30f8f8cSSatish Balay   }
404a30f8f8cSSatish Balay  PetscFunctionReturn(0);
405a30f8f8cSSatish Balay }
406a30f8f8cSSatish Balay 
4074a2ae208SSatish Balay #undef __FUNCT__
4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
410a30f8f8cSSatish Balay {
411a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
412dfbe8321SBarry Smith   PetscErrorCode ierr;
413a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
414a30f8f8cSSatish Balay 
415a30f8f8cSSatish Balay   PetscFunctionBegin;
416a30f8f8cSSatish Balay   if (baij->size == 1) {
417a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
418a30f8f8cSSatish Balay   } else {
419a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
420f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
422a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
423a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
424a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4257adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
426a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
427a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4280b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4290b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4300b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4310b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
432899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
433d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4340b8dc8d2SHong Zhang       MatScalar    *v;
4350b8dc8d2SHong Zhang 
43674ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
437d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4380b8dc8d2SHong Zhang       /* Amat */
4390b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4400b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4410b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4420b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4430b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4440b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4450b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4460b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4470b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4480b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4490b8dc8d2SHong Zhang               /* non-diagonal block */
4500b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4510b8dc8d2SHong Zhang             }
4520b8dc8d2SHong Zhang           }
4530b8dc8d2SHong Zhang         }
4540b8dc8d2SHong Zhang       }
4550b8dc8d2SHong Zhang       /* Bmat */
4560b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4570b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4580b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4590b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4600b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4610b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4620b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4630b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4640b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4650b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4660b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4670b8dc8d2SHong Zhang             }
4680b8dc8d2SHong Zhang           }
4690b8dc8d2SHong Zhang         }
4700b8dc8d2SHong Zhang       }
471d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4720b8dc8d2SHong Zhang       *norm = 0.0;
473d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4740b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4750b8dc8d2SHong Zhang       }
47674ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
477a30f8f8cSSatish Balay     } else {
478e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
479a30f8f8cSSatish Balay     }
480a30f8f8cSSatish Balay   }
481a30f8f8cSSatish Balay   PetscFunctionReturn(0);
482a30f8f8cSSatish Balay }
483a30f8f8cSSatish Balay 
4844a2ae208SSatish Balay #undef __FUNCT__
4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
487a30f8f8cSSatish Balay {
488a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
489dfbe8321SBarry Smith   PetscErrorCode ierr;
4901302d50aSBarry Smith   PetscInt       nstash,reallocs;
491a30f8f8cSSatish Balay   InsertMode     addv;
492a30f8f8cSSatish Balay 
493a30f8f8cSSatish Balay   PetscFunctionBegin;
494*4cb17eb5SBarry Smith   if (baij->donotstash || mat->nooffprocentries) {
495a30f8f8cSSatish Balay     PetscFunctionReturn(0);
496a30f8f8cSSatish Balay   }
497a30f8f8cSSatish Balay 
498a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4997adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
500e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
501a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
502a30f8f8cSSatish Balay 
503d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5081e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
509a30f8f8cSSatish Balay   PetscFunctionReturn(0);
510a30f8f8cSSatish Balay }
511a30f8f8cSSatish Balay 
5124a2ae208SSatish Balay #undef __FUNCT__
5134a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
514dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
515a30f8f8cSSatish Balay {
516a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
517a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5186849ba73SBarry Smith   PetscErrorCode ierr;
51913f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
520e44c0bd4SBarry Smith   PetscInt       *row,*col;
521e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52213f74950SBarry Smith   PetscMPIInt    n;
523a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
524a30f8f8cSSatish Balay   MatScalar      *val;
525a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
526a30f8f8cSSatish Balay 
52791c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
528a30f8f8cSSatish Balay   PetscFunctionBegin;
529a30f8f8cSSatish Balay 
530*4cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
531a30f8f8cSSatish Balay     while (1) {
532a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
533a30f8f8cSSatish Balay       if (!flg) break;
534a30f8f8cSSatish Balay 
535a30f8f8cSSatish Balay       for (i=0; i<n;) {
536a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
537a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
538a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
539a30f8f8cSSatish Balay         else       ncols = n-i;
540a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
541dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
542a30f8f8cSSatish Balay         i = j;
543a30f8f8cSSatish Balay       }
544a30f8f8cSSatish Balay     }
545a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
546a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
547a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
548a30f8f8cSSatish Balay        restore the original flags */
549a30f8f8cSSatish Balay     r1 = baij->roworiented;
550a30f8f8cSSatish Balay     r2 = a->roworiented;
55191c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
552a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
553a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
555a30f8f8cSSatish Balay     while (1) {
556a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
557a30f8f8cSSatish Balay       if (!flg) break;
558a30f8f8cSSatish Balay 
559a30f8f8cSSatish Balay       for (i=0; i<n;) {
560a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
561a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
562a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
563a30f8f8cSSatish Balay         else       ncols = n-i;
564dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
565a30f8f8cSSatish Balay         i = j;
566a30f8f8cSSatish Balay       }
567a30f8f8cSSatish Balay     }
568a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
569a30f8f8cSSatish Balay     baij->roworiented = r1;
570a30f8f8cSSatish Balay     a->roworiented    = r2;
57191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
572a30f8f8cSSatish Balay   }
573a30f8f8cSSatish Balay 
574a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
576a30f8f8cSSatish Balay 
577a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
578a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
579a30f8f8cSSatish Balay   /*
580a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
581a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
582a30f8f8cSSatish Balay   */
583a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5847adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
586c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
587a30f8f8cSSatish Balay     }
588a30f8f8cSSatish Balay   }
589a30f8f8cSSatish Balay 
590a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
592a30f8f8cSSatish Balay   }
59391c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
594a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
595a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
596a30f8f8cSSatish Balay 
59774ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
598a30f8f8cSSatish Balay   baij->rowvalues = 0;
5995222a1afSHong Zhang 
600a30f8f8cSSatish Balay   PetscFunctionReturn(0);
601a30f8f8cSSatish Balay }
602a30f8f8cSSatish Balay 
603dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6044a2ae208SSatish Balay #undef __FUNCT__
6054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6066849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
607a30f8f8cSSatish Balay {
608a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
609dfbe8321SBarry Smith   PetscErrorCode    ierr;
610d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6111302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61232077d6dSBarry Smith   PetscTruth        iascii,isdraw;
613b0a32e0cSBarry Smith   PetscViewer       sviewer;
614f3ef73ceSBarry Smith   PetscViewerFormat format;
615a30f8f8cSSatish Balay 
616a30f8f8cSSatish Balay   PetscFunctionBegin;
6172692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
6182692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
61932077d6dSBarry Smith   if (iascii) {
620b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
621456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
622a30f8f8cSSatish Balay       MatInfo info;
6237adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
624a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62577431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
626d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
627d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
630a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
63177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
632b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63307d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
634a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
635a30f8f8cSSatish Balay       PetscFunctionReturn(0);
636fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63777431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
638a30f8f8cSSatish Balay       PetscFunctionReturn(0);
639c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
640c1490034SHong Zhang       PetscFunctionReturn(0);
641a30f8f8cSSatish Balay     }
642a30f8f8cSSatish Balay   }
643a30f8f8cSSatish Balay 
644a30f8f8cSSatish Balay   if (isdraw) {
645b0a32e0cSBarry Smith     PetscDraw  draw;
646a30f8f8cSSatish Balay     PetscTruth isnull;
647b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
648b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
649a30f8f8cSSatish Balay   }
650a30f8f8cSSatish Balay 
651a30f8f8cSSatish Balay   if (size == 1) {
6527adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
653a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
654a30f8f8cSSatish Balay   } else {
655a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
656a30f8f8cSSatish Balay     Mat          A;
65765d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65865d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
659d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
660a30f8f8cSSatish Balay     MatScalar    *a;
661a30f8f8cSSatish Balay 
662f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6637adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     if (!rank) {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     } else {
667f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     }
669f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
670d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
67152e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
672a30f8f8cSSatish Balay 
673a30f8f8cSSatish Balay     /* copy over the A part */
67465d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
675a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6761302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
679e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
680a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
681a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
682e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
683a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
684dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
685a30f8f8cSSatish Balay           col++; a += bs;
686a30f8f8cSSatish Balay         }
687a30f8f8cSSatish Balay       }
688a30f8f8cSSatish Balay     }
689a30f8f8cSSatish Balay     /* copy over the B part */
69065d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69165d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
692a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
693e9f7bc9eSHong Zhang 
694e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
695a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
696a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
697a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
698a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
699799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
700a30f8f8cSSatish Balay           col++; a += bs;
701a30f8f8cSSatish Balay         }
702a30f8f8cSSatish Balay       }
703a30f8f8cSSatish Balay     }
704a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
707a30f8f8cSSatish Balay     /*
708a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
709b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
710a30f8f8cSSatish Balay     */
711b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71265d70643SHong Zhang     if (!rank) {
7137adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
714a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay     }
716b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
717a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
718a30f8f8cSSatish Balay   }
719a30f8f8cSSatish Balay   PetscFunctionReturn(0);
720a30f8f8cSSatish Balay }
721a30f8f8cSSatish Balay 
7224a2ae208SSatish Balay #undef __FUNCT__
7234a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
724dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
725a30f8f8cSSatish Balay {
726dfbe8321SBarry Smith   PetscErrorCode ierr;
72732077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
728a30f8f8cSSatish Balay 
729a30f8f8cSSatish Balay   PetscFunctionBegin;
7302692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
7312692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7322692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
7332692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73432077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
735a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
736a30f8f8cSSatish Balay   } else {
737e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
738a30f8f8cSSatish Balay   }
739a30f8f8cSSatish Balay   PetscFunctionReturn(0);
740a30f8f8cSSatish Balay }
741a30f8f8cSSatish Balay 
7424a2ae208SSatish Balay #undef __FUNCT__
7434a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
744dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
745a30f8f8cSSatish Balay {
746a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
747dfbe8321SBarry Smith   PetscErrorCode ierr;
748a30f8f8cSSatish Balay 
749a30f8f8cSSatish Balay   PetscFunctionBegin;
750a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
751d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
752a30f8f8cSSatish Balay #endif
753a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
75513ea16ffSHong Zhang   if (baij->A){ierr = MatDestroy(baij->A);CHKERRQ(ierr);}
75613ea16ffSHong Zhang   if (baij->B){ierr = MatDestroy(baij->B);CHKERRQ(ierr);}
757a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7589c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
759a30f8f8cSSatish Balay #else
76005b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
761a30f8f8cSSatish Balay #endif
76205b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
763a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
764a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76540781036SHong Zhang   if (baij->slvec0) {
76640781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76740781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76840781036SHong Zhang   }
76940781036SHong Zhang   if (baij->slvec1) {
77040781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
77140781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77240781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77340781036SHong Zhang   }
77440781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
7755755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77605b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77705b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
778fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
779fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
780fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
78165460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
78205b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
783a30f8f8cSSatish Balay #endif
78459ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78559ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
786899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
787a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
788901853e0SKris Buschelman 
789dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
792901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
793901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
794a30f8f8cSSatish Balay   PetscFunctionReturn(0);
795a30f8f8cSSatish Balay }
796a30f8f8cSSatish Balay 
7974a2ae208SSatish Balay #undef __FUNCT__
798547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
799547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
800547795f9SHong Zhang {
801547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
802547795f9SHong Zhang   PetscErrorCode ierr;
803547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
804547795f9SHong Zhang   PetscScalar    *x,*from;
805547795f9SHong Zhang 
806547795f9SHong Zhang   PetscFunctionBegin;
807547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
808e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
809547795f9SHong Zhang 
810547795f9SHong Zhang   /* diagonal part */
811547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
812547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
813547795f9SHong Zhang 
814547795f9SHong Zhang   /* subdiagonal part */
815547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
816547795f9SHong Zhang 
817547795f9SHong Zhang   /* copy x into the vec slvec0 */
818547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
819547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
820547795f9SHong Zhang 
821547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
823547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
824547795f9SHong Zhang 
825547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
827547795f9SHong Zhang   /* supperdiagonal part */
828547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
829547795f9SHong Zhang   PetscFunctionReturn(0);
830547795f9SHong Zhang }
831547795f9SHong Zhang 
832547795f9SHong Zhang #undef __FUNCT__
833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
835a9d4b620SHong Zhang {
836a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
837dfbe8321SBarry Smith   PetscErrorCode ierr;
838d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
839fa22f6d0SBarry Smith   PetscScalar    *x,*from;
840a9d4b620SHong Zhang 
841a9d4b620SHong Zhang   PetscFunctionBegin;
842a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
843e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
844a9d4b620SHong Zhang 
845a9d4b620SHong Zhang   /* diagonal part */
846a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
847fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
848a9d4b620SHong Zhang 
849a9d4b620SHong Zhang   /* subdiagonal part */
850a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
851fc165ae2SBarry Smith 
852a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8531ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8541ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
855a9d4b620SHong Zhang 
856fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
857fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8581ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
859fc165ae2SBarry Smith 
860fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
861ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
862a9d4b620SHong Zhang   /* supperdiagonal part */
863a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
864a9d4b620SHong Zhang   PetscFunctionReturn(0);
865a9d4b620SHong Zhang }
866a9d4b620SHong Zhang 
867a9d4b620SHong Zhang #undef __FUNCT__
86840781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
869dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
870a30f8f8cSSatish Balay {
871a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
872dfbe8321SBarry Smith   PetscErrorCode ierr;
8731302d50aSBarry Smith   PetscInt       nt;
874a30f8f8cSSatish Balay 
875a30f8f8cSSatish Balay   PetscFunctionBegin;
876a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
877e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
878e7e72b3dSBarry Smith 
879a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
880e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88165d70643SHong Zhang 
882ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
883b941877fSHong Zhang   /* do diagonal part */
884b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
885b941877fSHong Zhang   /* do supperdiagonal part */
886ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
887b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
888b941877fSHong Zhang   /* do subdiagonal part */
889b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
890ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
891ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89265d70643SHong Zhang 
893a30f8f8cSSatish Balay   PetscFunctionReturn(0);
894a30f8f8cSSatish Balay }
895a30f8f8cSSatish Balay 
8964a2ae208SSatish Balay #undef __FUNCT__
8974a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
898dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
899a30f8f8cSSatish Balay {
900de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
901dfbe8321SBarry Smith   PetscErrorCode ierr;
902d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
903a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
904a9d4b620SHong Zhang 
905a9d4b620SHong Zhang   PetscFunctionBegin;
906a9d4b620SHong Zhang   /*
9077adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9087adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
909a9d4b620SHong Zhang   */
910a9d4b620SHong Zhang   /* diagonal part */
911a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9122dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
913a9d4b620SHong Zhang 
914a9d4b620SHong Zhang   /* subdiagonal part */
915a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
916a9d4b620SHong Zhang 
917a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9181ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9191ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
920a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9211ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
922a9d4b620SHong Zhang 
923ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9241ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
925ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
926a9d4b620SHong Zhang 
927a9d4b620SHong Zhang   /* supperdiagonal part */
928a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
929a9d4b620SHong Zhang 
930a9d4b620SHong Zhang   PetscFunctionReturn(0);
931a9d4b620SHong Zhang }
932a9d4b620SHong Zhang 
933a9d4b620SHong Zhang #undef __FUNCT__
934a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
935dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
936a9d4b620SHong Zhang {
937a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
938dfbe8321SBarry Smith   PetscErrorCode ierr;
939a30f8f8cSSatish Balay 
940a30f8f8cSSatish Balay   PetscFunctionBegin;
941ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
942b941877fSHong Zhang   /* do diagonal part */
943b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
944b941877fSHong Zhang   /* do supperdiagonal part */
945ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
946de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
947de8b6608SHong Zhang 
948b941877fSHong Zhang   /* do subdiagonal part */
949a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
950ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
951ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
952aa482183SHong Zhang 
953a30f8f8cSSatish Balay   PetscFunctionReturn(0);
954a30f8f8cSSatish Balay }
955a30f8f8cSSatish Balay 
956a30f8f8cSSatish Balay /*
957a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
958a30f8f8cSSatish Balay    diagonal block
959a30f8f8cSSatish Balay */
9604a2ae208SSatish Balay #undef __FUNCT__
9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
963a30f8f8cSSatish Balay {
964a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
965dfbe8321SBarry Smith   PetscErrorCode ierr;
966a30f8f8cSSatish Balay 
967a30f8f8cSSatish Balay   PetscFunctionBegin;
968e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
969a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
970a30f8f8cSSatish Balay   PetscFunctionReturn(0);
971a30f8f8cSSatish Balay }
972a30f8f8cSSatish Balay 
9734a2ae208SSatish Balay #undef __FUNCT__
9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
976a30f8f8cSSatish Balay {
977a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
978dfbe8321SBarry Smith   PetscErrorCode ierr;
979a30f8f8cSSatish Balay 
980a30f8f8cSSatish Balay   PetscFunctionBegin;
981f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
982f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
983a30f8f8cSSatish Balay   PetscFunctionReturn(0);
984a30f8f8cSSatish Balay }
985a30f8f8cSSatish Balay 
9864a2ae208SSatish Balay #undef __FUNCT__
9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
989a30f8f8cSSatish Balay {
990d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
991d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
992d0d4cfc2SHong Zhang   PetscErrorCode ierr;
993d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
994d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
995899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
996d0d4cfc2SHong Zhang 
997a30f8f8cSSatish Balay   PetscFunctionBegin;
998e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
999d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1000d0d4cfc2SHong Zhang 
1001d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1002d0d4cfc2SHong Zhang     /*
1003d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1004d0d4cfc2SHong Zhang     */
1005d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1006d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1007d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1008d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1009d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1010d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1011d0d4cfc2SHong Zhang     }
101274ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1013d0d4cfc2SHong Zhang   }
1014d0d4cfc2SHong Zhang 
1015e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1016d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1017d0d4cfc2SHong Zhang 
1018d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1019d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1020d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1021d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1022d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1023d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1024d0d4cfc2SHong Zhang 
1025d0d4cfc2SHong Zhang   cmap  = mat->garray;
1026d0d4cfc2SHong Zhang   if (v  || idx) {
1027d0d4cfc2SHong Zhang     if (nztot) {
1028d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1029d0d4cfc2SHong Zhang       PetscInt imark = -1;
1030d0d4cfc2SHong Zhang       if (v) {
1031d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1032d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1033d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1034d0d4cfc2SHong Zhang           else break;
1035d0d4cfc2SHong Zhang         }
1036d0d4cfc2SHong Zhang         imark = i;
1037d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1038d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1039d0d4cfc2SHong Zhang       }
1040d0d4cfc2SHong Zhang       if (idx) {
1041d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1042d0d4cfc2SHong Zhang         if (imark > -1) {
1043d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1044d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1045d0d4cfc2SHong Zhang           }
1046d0d4cfc2SHong Zhang         } else {
1047d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1048d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1049d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1050d0d4cfc2SHong Zhang             else break;
1051d0d4cfc2SHong Zhang           }
1052d0d4cfc2SHong Zhang           imark = i;
1053d0d4cfc2SHong Zhang         }
1054d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1055d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1056d0d4cfc2SHong Zhang       }
1057d0d4cfc2SHong Zhang     } else {
1058d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1059d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1060d0d4cfc2SHong Zhang     }
1061d0d4cfc2SHong Zhang   }
1062d0d4cfc2SHong Zhang   *nz = nztot;
1063d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1064d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1065a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1066a30f8f8cSSatish Balay }
1067a30f8f8cSSatish Balay 
10684a2ae208SSatish Balay #undef __FUNCT__
10694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10701302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1071a30f8f8cSSatish Balay {
1072a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1073a30f8f8cSSatish Balay 
1074a30f8f8cSSatish Balay   PetscFunctionBegin;
1075e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1076a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1077a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1078a30f8f8cSSatish Balay }
1079a30f8f8cSSatish Balay 
10804a2ae208SSatish Balay #undef __FUNCT__
1081d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1082d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1083d0d4cfc2SHong Zhang {
1084d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1085d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1086d0d4cfc2SHong Zhang 
1087d0d4cfc2SHong Zhang   PetscFunctionBegin;
1088d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1089d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1090d0d4cfc2SHong Zhang }
1091d0d4cfc2SHong Zhang #undef __FUNCT__
1092d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1093d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1094d0d4cfc2SHong Zhang {
1095d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1096d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1097d0d4cfc2SHong Zhang 
1098d0d4cfc2SHong Zhang   PetscFunctionBegin;
1099d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1100d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1101d0d4cfc2SHong Zhang }
1102d0d4cfc2SHong Zhang 
1103d0d4cfc2SHong Zhang #undef __FUNCT__
110499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110699cafbc1SBarry Smith {
110799cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110899cafbc1SBarry Smith   PetscErrorCode ierr;
110999cafbc1SBarry Smith 
111099cafbc1SBarry Smith   PetscFunctionBegin;
111199cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111299cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111399cafbc1SBarry Smith   PetscFunctionReturn(0);
111499cafbc1SBarry Smith }
111599cafbc1SBarry Smith 
111699cafbc1SBarry Smith #undef __FUNCT__
111799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111999cafbc1SBarry Smith {
112099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112199cafbc1SBarry Smith   PetscErrorCode ierr;
112299cafbc1SBarry Smith 
112399cafbc1SBarry Smith   PetscFunctionBegin;
112499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112699cafbc1SBarry Smith   PetscFunctionReturn(0);
112799cafbc1SBarry Smith }
112899cafbc1SBarry Smith 
112999cafbc1SBarry Smith #undef __FUNCT__
11304a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1131dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1132a30f8f8cSSatish Balay {
1133a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1134dfbe8321SBarry Smith   PetscErrorCode ierr;
1135a30f8f8cSSatish Balay 
1136a30f8f8cSSatish Balay   PetscFunctionBegin;
1137a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1138a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1139a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1140a30f8f8cSSatish Balay }
1141a30f8f8cSSatish Balay 
11424a2ae208SSatish Balay #undef __FUNCT__
11434a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1144dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1145a30f8f8cSSatish Balay {
1146a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1147a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1148dfbe8321SBarry Smith   PetscErrorCode ierr;
1149a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1150a30f8f8cSSatish Balay 
1151a30f8f8cSSatish Balay   PetscFunctionBegin;
1152d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1153a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1154a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1155a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1156a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1157a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1158a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1159a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1160a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1161a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1162a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1163a30f8f8cSSatish Balay     info->memory       = isend[3];
1164a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1165a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11667adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1167a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1168a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1169a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1170a30f8f8cSSatish Balay     info->memory       = irecv[3];
1171a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1172a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11737adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1174a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1175a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1176a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1177a30f8f8cSSatish Balay     info->memory       = irecv[3];
1178a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1179a30f8f8cSSatish Balay   } else {
1180e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1181a30f8f8cSSatish Balay   }
1182a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1183a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1184a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1185a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1186a30f8f8cSSatish Balay }
1187a30f8f8cSSatish Balay 
11884a2ae208SSatish Balay #undef __FUNCT__
11894a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11904e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1191a30f8f8cSSatish Balay {
1192a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1193d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1194dfbe8321SBarry Smith   PetscErrorCode ierr;
1195a30f8f8cSSatish Balay 
1196a30f8f8cSSatish Balay   PetscFunctionBegin;
1197e98b92d7SKris Buschelman   switch (op) {
1198512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1199e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1201a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1202e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12034e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12044e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1205e98b92d7SKris Buschelman     break;
1206e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12074e0d8c25SBarry Smith     a->roworiented = flg;
12084e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12094e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1210e98b92d7SKris Buschelman     break;
12114e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1212290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1213e98b92d7SKris Buschelman     break;
1214e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12154e0d8c25SBarry Smith     a->donotstash = flg;
1216e98b92d7SKris Buschelman     break;
1217e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12184e0d8c25SBarry Smith     a->ht_flag = flg;
1219e98b92d7SKris Buschelman     break;
12209a4540c5SBarry Smith   case MAT_HERMITIAN:
1221e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1222eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1223547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1224eeffb40dSHong Zhang     break;
1225ffa07934SHong Zhang   case MAT_SPD:
1226ffa07934SHong Zhang     A->spd_set                         = PETSC_TRUE;
1227ffa07934SHong Zhang     A->spd                             = flg;
1228ffa07934SHong Zhang     if (flg) {
1229ffa07934SHong Zhang       A->symmetric                     = PETSC_TRUE;
1230ffa07934SHong Zhang       A->structurally_symmetric        = PETSC_TRUE;
1231ffa07934SHong Zhang       A->symmetric_set                 = PETSC_TRUE;
1232ffa07934SHong Zhang       A->structurally_symmetric_set    = PETSC_TRUE;
1233ffa07934SHong Zhang     }
1234ffa07934SHong Zhang     break;
123577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1236eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1237eeffb40dSHong Zhang     break;
123877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1239eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1240eeffb40dSHong Zhang     break;
12419a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1242e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1243290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124477e54ba9SKris Buschelman     break;
1245d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12464e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1247d0d4cfc2SHong Zhang     break;
1248d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12494e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1250d0d4cfc2SHong Zhang     break;
1251d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12524e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1253d0d4cfc2SHong Zhang     break;
1254e98b92d7SKris Buschelman   default:
1255e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1256a30f8f8cSSatish Balay   }
1257a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1258a30f8f8cSSatish Balay }
1259a30f8f8cSSatish Balay 
12604a2ae208SSatish Balay #undef __FUNCT__
12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1263a30f8f8cSSatish Balay {
1264dfbe8321SBarry Smith   PetscErrorCode ierr;
1265a30f8f8cSSatish Balay   PetscFunctionBegin;
1266815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1267999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1268fc4dec0aSBarry Smith   }
12698115998fSBarry Smith   PetscFunctionReturn(0);
1270a30f8f8cSSatish Balay }
1271a30f8f8cSSatish Balay 
12724a2ae208SSatish Balay #undef __FUNCT__
12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1275a30f8f8cSSatish Balay {
1276a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1277a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1278dfbe8321SBarry Smith   PetscErrorCode ierr;
12795e90f9d9SHong Zhang   PetscInt       nv,m,n;
1280b3bf805bSHong Zhang   PetscTruth     flg;
1281a30f8f8cSSatish Balay 
1282a30f8f8cSSatish Balay   PetscFunctionBegin;
1283a30f8f8cSSatish Balay   if (ll != rr){
1284b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1285e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1286a30f8f8cSSatish Balay   }
1287b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1288b3bf805bSHong Zhang 
12895e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1290e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1291b3bf805bSHong Zhang 
12925e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1293e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12945e90f9d9SHong Zhang 
1295ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12965e90f9d9SHong Zhang 
12975e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1298a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12995e90f9d9SHong Zhang 
13005e90f9d9SHong Zhang   /* scale the diagonal part */
1301a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1302a30f8f8cSSatish Balay 
13035e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1304ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1305a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1306a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1307a30f8f8cSSatish Balay }
1308a30f8f8cSSatish Balay 
13094a2ae208SSatish Balay #undef __FUNCT__
13104a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1311dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1312a30f8f8cSSatish Balay {
1313f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1314dfbe8321SBarry Smith   PetscErrorCode ierr;
1315a30f8f8cSSatish Balay 
1316a30f8f8cSSatish Balay   PetscFunctionBegin;
1317a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1318a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1319a30f8f8cSSatish Balay }
1320a30f8f8cSSatish Balay 
13216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1322a30f8f8cSSatish Balay 
13234a2ae208SSatish Balay #undef __FUNCT__
13244a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1325dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1326a30f8f8cSSatish Balay {
1327a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1328a30f8f8cSSatish Balay   Mat            a,b,c,d;
1329a30f8f8cSSatish Balay   PetscTruth     flg;
1330dfbe8321SBarry Smith   PetscErrorCode ierr;
1331a30f8f8cSSatish Balay 
1332a30f8f8cSSatish Balay   PetscFunctionBegin;
1333a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1334a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1335a30f8f8cSSatish Balay 
1336a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1337abc0a331SBarry Smith   if (flg) {
1338a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1339a30f8f8cSSatish Balay   }
13407adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1341a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1342a30f8f8cSSatish Balay }
1343a30f8f8cSSatish Balay 
13444a2ae208SSatish Balay #undef __FUNCT__
13453c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13463c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13473c896bc6SHong Zhang {
13483c896bc6SHong Zhang   PetscErrorCode ierr;
13493c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13503c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13513c896bc6SHong Zhang 
13523c896bc6SHong Zhang   PetscFunctionBegin;
13533c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13543c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1355d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13563c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1357d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13583c896bc6SHong Zhang   } else {
13593c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13603c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13613c896bc6SHong Zhang   }
13623c896bc6SHong Zhang   PetscFunctionReturn(0);
13633c896bc6SHong Zhang }
13643c896bc6SHong Zhang 
13653c896bc6SHong Zhang #undef __FUNCT__
13664a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1367dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1368273d9f13SBarry Smith {
1369dfbe8321SBarry Smith   PetscErrorCode ierr;
1370273d9f13SBarry Smith 
1371273d9f13SBarry Smith   PetscFunctionBegin;
1372db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1373273d9f13SBarry Smith   PetscFunctionReturn(0);
1374273d9f13SBarry Smith }
1375a5e6ed63SBarry Smith 
13764fe895cdSHong Zhang #undef __FUNCT__
13774fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13784fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13794fe895cdSHong Zhang {
13804fe895cdSHong Zhang   PetscErrorCode ierr;
13814fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13824fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13834fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13844fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13854fe895cdSHong Zhang 
13864fe895cdSHong Zhang   PetscFunctionBegin;
13874fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13884fe895cdSHong Zhang     PetscScalar alpha = a;
13894fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13904fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13910805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13924fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13934fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13944fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13950805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13964fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13974fe895cdSHong Zhang   } else {
1398d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13994fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1400d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14014fe895cdSHong Zhang   }
14024fe895cdSHong Zhang   PetscFunctionReturn(0);
14034fe895cdSHong Zhang }
14044fe895cdSHong Zhang 
1405a5e6ed63SBarry Smith #undef __FUNCT__
14066363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
14076363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
14086363de48SJed Brown {
14096363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14106363de48SJed Brown   PetscInt        rbs,cbs;
14116363de48SJed Brown   PetscErrorCode  ierr;
14126363de48SJed Brown 
14136363de48SJed Brown   PetscFunctionBegin;
14146363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14156363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14166363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14176363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1418e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
1419e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14206363de48SJed Brown   PetscFunctionReturn(0);
14216363de48SJed Brown }
14226363de48SJed Brown 
14236363de48SJed Brown #undef __FUNCT__
1424a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14251302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1426a5e6ed63SBarry Smith {
14276849ba73SBarry Smith   PetscErrorCode ierr;
14281302d50aSBarry Smith   PetscInt       i;
1429a5e6ed63SBarry Smith   PetscTruth     flg;
1430a5e6ed63SBarry Smith 
14316849ba73SBarry Smith   PetscFunctionBegin;
1432a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1433a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1434e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1435a5e6ed63SBarry Smith   }
1436a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1437a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1438a5e6ed63SBarry Smith }
1439a5e6ed63SBarry Smith 
1440a5e6ed63SBarry Smith 
1441a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1442a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1443a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1444a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1445a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1446a9d4b620SHong Zhang        MatMult_MPISBAIJ,
144797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1448431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1449431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1450a30f8f8cSSatish Balay        0,
1451a30f8f8cSSatish Balay        0,
1452a30f8f8cSSatish Balay        0,
145397304618SKris Buschelman /*10*/ 0,
1454a30f8f8cSSatish Balay        0,
1455a30f8f8cSSatish Balay        0,
145641f059aeSBarry Smith        MatSOR_MPISBAIJ,
1457a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
145897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1459a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1460a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1462a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1464a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1465a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1466a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1467d519adbfSMatthew Knepley /*24*/ 0,
1468a30f8f8cSSatish Balay        0,
1469a30f8f8cSSatish Balay        0,
1470a30f8f8cSSatish Balay        0,
1471a30f8f8cSSatish Balay        0,
1472d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1473b5df2d14SHong Zhang        0,
1474a30f8f8cSSatish Balay        0,
1475a30f8f8cSSatish Balay        0,
1476a30f8f8cSSatish Balay        0,
1477d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481a30f8f8cSSatish Balay        0,
1482d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1483a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1484d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1485a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14863c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1487d519adbfSMatthew Knepley /*44*/ 0,
1488a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1489a30f8f8cSSatish Balay        0,
1490a30f8f8cSSatish Balay        0,
1491a30f8f8cSSatish Balay        0,
14926363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1493a30f8f8cSSatish Balay        0,
1494a30f8f8cSSatish Balay        0,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        0,
1497d519adbfSMatthew Knepley /*54*/ 0,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1500a30f8f8cSSatish Balay        0,
1501a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1502d519adbfSMatthew Knepley /*59*/ 0,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        0,
1505357abbc8SBarry Smith        0,
150624d5174aSHong Zhang        0,
1507d519adbfSMatthew Knepley /*64*/ 0,
150824d5174aSHong Zhang        0,
150924d5174aSHong Zhang        0,
151024d5174aSHong Zhang        0,
151124d5174aSHong Zhang        0,
1512d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151324d5174aSHong Zhang        0,
151497304618SKris Buschelman        0,
151597304618SKris Buschelman        0,
151697304618SKris Buschelman        0,
1517d519adbfSMatthew Knepley /*74*/ 0,
151897304618SKris Buschelman        0,
151997304618SKris Buschelman        0,
152097304618SKris Buschelman        0,
152197304618SKris Buschelman        0,
1522d519adbfSMatthew Knepley /*79*/ 0,
152397304618SKris Buschelman        0,
152497304618SKris Buschelman        0,
152597304618SKris Buschelman        0,
15265bba2384SShri Abhyankar        MatLoad_MPISBAIJ,
1527d519adbfSMatthew Knepley /*84*/ 0,
1528865e5f61SKris Buschelman        0,
1529865e5f61SKris Buschelman        0,
1530865e5f61SKris Buschelman        0,
1531865e5f61SKris Buschelman        0,
1532d519adbfSMatthew Knepley /*89*/ 0,
1533865e5f61SKris Buschelman        0,
1534865e5f61SKris Buschelman        0,
1535865e5f61SKris Buschelman        0,
1536865e5f61SKris Buschelman        0,
1537d519adbfSMatthew Knepley /*94*/ 0,
1538865e5f61SKris Buschelman        0,
1539865e5f61SKris Buschelman        0,
154099cafbc1SBarry Smith        0,
154199cafbc1SBarry Smith        0,
1542d519adbfSMatthew Knepley /*99*/ 0,
154399cafbc1SBarry Smith        0,
154499cafbc1SBarry Smith        0,
154599cafbc1SBarry Smith        0,
154699cafbc1SBarry Smith        0,
1547d519adbfSMatthew Knepley /*104*/0,
154899cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1549d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1550d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
155195936485SShri Abhyankar        MatRestoreRowUpperTriangular_MPISBAIJ,
155295936485SShri Abhyankar /*109*/0,
155395936485SShri Abhyankar        0,
155495936485SShri Abhyankar        0,
155595936485SShri Abhyankar        0,
155695936485SShri Abhyankar        0,
155795936485SShri Abhyankar /*114*/0,
155895936485SShri Abhyankar        0,
155995936485SShri Abhyankar        0,
156095936485SShri Abhyankar        0,
156195936485SShri Abhyankar        0,
156295936485SShri Abhyankar /*119*/0,
156395936485SShri Abhyankar        0,
156495936485SShri Abhyankar        0,
15655bba2384SShri Abhyankar        0
156699cafbc1SBarry Smith };
1567a30f8f8cSSatish Balay 
1568a30f8f8cSSatish Balay 
1569a30f8f8cSSatish Balay EXTERN_C_BEGIN
15704a2ae208SSatish Balay #undef __FUNCT__
15714a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1572be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1573a30f8f8cSSatish Balay {
1574a30f8f8cSSatish Balay   PetscFunctionBegin;
1575a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1576a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1577a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1578a30f8f8cSSatish Balay }
1579a30f8f8cSSatish Balay EXTERN_C_END
1580a30f8f8cSSatish Balay 
1581273d9f13SBarry Smith EXTERN_C_BEGIN
15824a2ae208SSatish Balay #undef __FUNCT__
1583a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1584be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1585a23d5eceSKris Buschelman {
1586a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1587dfbe8321SBarry Smith   PetscErrorCode ierr;
1588db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1589a23d5eceSKris Buschelman 
1590a23d5eceSKris Buschelman   PetscFunctionBegin;
1591db4efbfdSBarry Smith   if (bs < 0){
15927adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1593db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15948c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1595db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1596db4efbfdSBarry Smith   }
1597e7e72b3dSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1598db4efbfdSBarry Smith   bs = newbs;
1599a23d5eceSKris Buschelman 
1600a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1601a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1602e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1603e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1604899cda47SBarry Smith 
1605d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
160626283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
160726283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1608899cda47SBarry Smith 
1609a23d5eceSKris Buschelman   if (d_nnz) {
1610d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1611e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1612a23d5eceSKris Buschelman     }
1613a23d5eceSKris Buschelman   }
1614a23d5eceSKris Buschelman   if (o_nnz) {
1615d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1616e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1617a23d5eceSKris Buschelman     }
1618a23d5eceSKris Buschelman   }
1619a23d5eceSKris Buschelman 
1620a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1621d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1622d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1623d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1624e32f2f54SBarry Smith     SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1625a23d5eceSKris Buschelman   }
1626a23d5eceSKris Buschelman 
1627d0f46423SBarry Smith   B->rmap->bs  = bs;
1628a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1629a23d5eceSKris Buschelman   b->mbs = mbs;
1630a23d5eceSKris Buschelman   b->nbs = mbs;
1631a23d5eceSKris Buschelman   b->Mbs = Mbs;
1632a23d5eceSKris Buschelman   b->Nbs = Mbs;
1633a23d5eceSKris Buschelman 
1634a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1635d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1636a23d5eceSKris Buschelman   }
1637d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1638d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1639a23d5eceSKris Buschelman 
1640d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1641d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1642a23d5eceSKris Buschelman 
1643526dfc15SBarry Smith   if (!B->preallocated) {
1644f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1645d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16469c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
164752e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1648f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1649d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16504aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
165152e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
165215bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1653526dfc15SBarry Smith   }
1654a23d5eceSKris Buschelman 
1655526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1656526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1657526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1658a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1659a23d5eceSKris Buschelman }
1660a23d5eceSKris Buschelman EXTERN_C_END
1661a23d5eceSKris Buschelman 
16625c9eb25fSBarry Smith EXTERN_C_BEGIN
1663611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1664bccb9932SShri Abhyankar extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1665611f576cSBarry Smith #endif
1666611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16675c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1668611f576cSBarry Smith #endif
1669b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1670b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1671b5e56a35SBarry Smith #endif
16725c9eb25fSBarry Smith EXTERN_C_END
16735c9eb25fSBarry Smith 
16740bad9183SKris Buschelman /*MC
1675fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16760bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16770bad9183SKris Buschelman 
16780bad9183SKris Buschelman    Options Database Keys:
16790bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16800bad9183SKris Buschelman 
16810bad9183SKris Buschelman   Level: beginner
16820bad9183SKris Buschelman 
16830bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16840bad9183SKris Buschelman M*/
16850bad9183SKris Buschelman 
1686a23d5eceSKris Buschelman EXTERN_C_BEGIN
1687a23d5eceSKris Buschelman #undef __FUNCT__
16884a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1689be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1690b5df2d14SHong Zhang {
1691b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1692dfbe8321SBarry Smith   PetscErrorCode ierr;
1693b5df2d14SHong Zhang   PetscTruth     flg;
1694b5df2d14SHong Zhang 
1695b5df2d14SHong Zhang   PetscFunctionBegin;
1696b5df2d14SHong Zhang 
169738f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1698b0a32e0cSBarry Smith   B->data = (void*)b;
1699b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1700b5df2d14SHong Zhang 
1701b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1702b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1703b5df2d14SHong Zhang   B->mapping         = 0;
1704b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1705b5df2d14SHong Zhang 
1706b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
17077adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
17087adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1709b5df2d14SHong Zhang 
1710b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1711899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1712b5df2d14SHong Zhang 
1713b5df2d14SHong Zhang   /* build cache for off array entries formed */
17147adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1715b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1716b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1717b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1718b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1719b5df2d14SHong Zhang 
1720b5df2d14SHong Zhang   /* stuff used in block assembly */
1721b5df2d14SHong Zhang   b->barray       = 0;
1722b5df2d14SHong Zhang 
1723b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1724b5df2d14SHong Zhang   b->lvec         = 0;
1725b5df2d14SHong Zhang   b->Mvctx        = 0;
172640781036SHong Zhang   b->slvec0       = 0;
172740781036SHong Zhang   b->slvec0b      = 0;
172840781036SHong Zhang   b->slvec1       = 0;
172940781036SHong Zhang   b->slvec1a      = 0;
173040781036SHong Zhang   b->slvec1b      = 0;
173140781036SHong Zhang   b->sMvctx       = 0;
1732b5df2d14SHong Zhang 
1733b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1734b5df2d14SHong Zhang   b->rowindices   = 0;
1735b5df2d14SHong Zhang   b->rowvalues    = 0;
1736b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1737b5df2d14SHong Zhang 
1738b5df2d14SHong Zhang   /* hash table stuff */
1739b5df2d14SHong Zhang   b->ht           = 0;
1740b5df2d14SHong Zhang   b->hd           = 0;
1741b5df2d14SHong Zhang   b->ht_size      = 0;
1742b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1743b5df2d14SHong Zhang   b->ht_fact      = 0;
1744b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1745b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1746b5df2d14SHong Zhang 
174759ffdab8SBarry Smith   b->in_loc       = 0;
174859ffdab8SBarry Smith   b->v_loc        = 0;
174959ffdab8SBarry Smith   b->n_loc        = 0;
17507adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17518c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1752b5df2d14SHong Zhang     if (flg) {
1753f6275e2eSBarry Smith       PetscReal fact = 1.39;
17544e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17558c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1756b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1757b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17581e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1759b5df2d14SHong Zhang     }
17608c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17618c07d4e3SBarry Smith 
1762b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1763ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1764b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1765b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1766b5e56a35SBarry Smith #endif
1767611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1768ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
1769bccb9932SShri Abhyankar                                      "MatGetFactor_sbaij_mumps",
1770bccb9932SShri Abhyankar                                      MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1771611f576cSBarry Smith #endif
1772611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1773ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17745c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17755c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1776611f576cSBarry Smith #endif
1777b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1778b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1779b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1780b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1781b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1782b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1783b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1784b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1785b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1786a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1787a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1788a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
178923ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
179023ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
179123ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
179223ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
179317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1794b5df2d14SHong Zhang   PetscFunctionReturn(0);
1795b5df2d14SHong Zhang }
1796273d9f13SBarry Smith EXTERN_C_END
1797b5df2d14SHong Zhang 
1798209238afSKris Buschelman /*MC
1799002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1800209238afSKris Buschelman 
1801209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1802209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1803209238afSKris Buschelman 
1804209238afSKris Buschelman    Options Database Keys:
1805209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1806209238afSKris Buschelman 
1807209238afSKris Buschelman   Level: beginner
1808209238afSKris Buschelman 
1809209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1810209238afSKris Buschelman M*/
1811209238afSKris Buschelman 
1812209238afSKris Buschelman EXTERN_C_BEGIN
1813209238afSKris Buschelman #undef __FUNCT__
1814209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1815be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1816dfbe8321SBarry Smith {
18176849ba73SBarry Smith   PetscErrorCode ierr;
18181302d50aSBarry Smith   PetscMPIInt    size;
1819209238afSKris Buschelman 
1820209238afSKris Buschelman   PetscFunctionBegin;
18217adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1822209238afSKris Buschelman   if (size == 1) {
1823209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1824209238afSKris Buschelman   } else {
1825209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1826209238afSKris Buschelman   }
1827209238afSKris Buschelman   PetscFunctionReturn(0);
1828209238afSKris Buschelman }
1829209238afSKris Buschelman EXTERN_C_END
1830209238afSKris Buschelman 
18314a2ae208SSatish Balay #undef __FUNCT__
18324a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1833b5df2d14SHong Zhang /*@C
1834b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1835b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1836b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1837b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1838b5df2d14SHong Zhang 
1839b5df2d14SHong Zhang    Collective on Mat
1840b5df2d14SHong Zhang 
1841b5df2d14SHong Zhang    Input Parameters:
1842b5df2d14SHong Zhang +  A - the matrix
1843b5df2d14SHong Zhang .  bs   - size of blockk
1844b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1845b5df2d14SHong Zhang            submatrix  (same for all local rows)
1846b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18476d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18486d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18496d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1850b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1851b5df2d14SHong Zhang            submatrix (same for all local rows).
1852b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1853b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1854b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1855b5df2d14SHong Zhang 
1856b5df2d14SHong Zhang 
1857b5df2d14SHong Zhang    Options Database Keys:
1858b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1859b5df2d14SHong Zhang                      block calculations (much slower)
1860b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1861b5df2d14SHong Zhang 
1862b5df2d14SHong Zhang    Notes:
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1865b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1866b5df2d14SHong Zhang 
186749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
186849a6f317SBarry Smith 
1869b5df2d14SHong Zhang    Storage Information:
1870b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1871b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1872b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1873b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1874b5df2d14SHong Zhang 
1875b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1876b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1877b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1878b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1879b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1880b5df2d14SHong Zhang 
1881aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1882aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1883aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1884aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1885aa95bbe8SBarry Smith 
1886b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1887b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1888b5df2d14SHong Zhang 
1889b5df2d14SHong Zhang .vb
1890b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1891b5df2d14SHong Zhang           -------------------
1892b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1893b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1894b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1895b5df2d14SHong Zhang           -------------------
1896b5df2d14SHong Zhang .ve
1897b5df2d14SHong Zhang 
1898b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1899b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19006d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19016d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1902b5df2d14SHong Zhang 
19036d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19046d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1905b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1906b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1907b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1908b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1909b5df2d14SHong Zhang    matrices.
1910b5df2d14SHong Zhang 
1911b5df2d14SHong Zhang    Level: intermediate
1912b5df2d14SHong Zhang 
1913b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1914b5df2d14SHong Zhang 
1915b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1916b5df2d14SHong Zhang @*/
1917be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1918b5df2d14SHong Zhang {
19191302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1920b5df2d14SHong Zhang 
1921b5df2d14SHong Zhang   PetscFunctionBegin;
1922a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1923a23d5eceSKris Buschelman   if (f) {
1924a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1925b5df2d14SHong Zhang   }
1926b5df2d14SHong Zhang   PetscFunctionReturn(0);
1927b5df2d14SHong Zhang }
1928b5df2d14SHong Zhang 
19294a2ae208SSatish Balay #undef __FUNCT__
19304a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1931a30f8f8cSSatish Balay /*@C
1932a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1933a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1934a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1935a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1936a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1937a30f8f8cSSatish Balay 
1938a30f8f8cSSatish Balay    Collective on MPI_Comm
1939a30f8f8cSSatish Balay 
1940a30f8f8cSSatish Balay    Input Parameters:
1941a30f8f8cSSatish Balay +  comm - MPI communicator
1942a30f8f8cSSatish Balay .  bs   - size of blockk
1943a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1944a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1945a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1946a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1947a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1948a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1949a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1950a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1951a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1952a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1953a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19546d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19556d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19566d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1957a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1958a30f8f8cSSatish Balay            submatrix (same for all local rows).
1959a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1960a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1961a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1962a30f8f8cSSatish Balay 
1963a30f8f8cSSatish Balay    Output Parameter:
1964a30f8f8cSSatish Balay .  A - the matrix
1965a30f8f8cSSatish Balay 
1966a30f8f8cSSatish Balay    Options Database Keys:
1967a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1968a30f8f8cSSatish Balay                      block calculations (much slower)
1969a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1970a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1971a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1972a30f8f8cSSatish Balay 
1973175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1974ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1975175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1976175b88e8SBarry Smith 
1977a30f8f8cSSatish Balay    Notes:
1978d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19796d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1980d1be2dadSMatthew Knepley 
1981a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1982a30f8f8cSSatish Balay    (possibly both).
1983a30f8f8cSSatish Balay 
1984a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1985a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1986a30f8f8cSSatish Balay 
198749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
198849a6f317SBarry Smith 
1989a30f8f8cSSatish Balay    Storage Information:
1990a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1991a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1992a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1993a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1994a30f8f8cSSatish Balay 
1995a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1996a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1997a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1998a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1999a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2000a30f8f8cSSatish Balay 
2001a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2002a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2003a30f8f8cSSatish Balay 
2004a30f8f8cSSatish Balay .vb
2005a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2006a30f8f8cSSatish Balay           -------------------
2007a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
2008a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2009a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2010a30f8f8cSSatish Balay           -------------------
2011a30f8f8cSSatish Balay .ve
2012a30f8f8cSSatish Balay 
2013a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2014a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20156d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20166d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2017a30f8f8cSSatish Balay 
20186d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20196d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2020a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2021a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2022a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2023a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2024a30f8f8cSSatish Balay    matrices.
2025a30f8f8cSSatish Balay 
2026a30f8f8cSSatish Balay    Level: intermediate
2027a30f8f8cSSatish Balay 
2028a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2029a30f8f8cSSatish Balay 
2030a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2031a30f8f8cSSatish Balay @*/
2032a30f8f8cSSatish Balay 
2033be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2034a30f8f8cSSatish Balay {
20356849ba73SBarry Smith   PetscErrorCode ierr;
20361302d50aSBarry Smith   PetscMPIInt    size;
2037a30f8f8cSSatish Balay 
2038a30f8f8cSSatish Balay   PetscFunctionBegin;
2039f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2040f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2041273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2042273d9f13SBarry Smith   if (size > 1) {
2043b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2044b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2045273d9f13SBarry Smith   } else {
2046273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2047273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2048273d9f13SBarry Smith   }
2049a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2050a30f8f8cSSatish Balay }
2051a30f8f8cSSatish Balay 
2052a30f8f8cSSatish Balay 
20534a2ae208SSatish Balay #undef __FUNCT__
20544a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2056a30f8f8cSSatish Balay {
2057a30f8f8cSSatish Balay   Mat            mat;
2058a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2059dfbe8321SBarry Smith   PetscErrorCode ierr;
2060d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2061387bc808SHong Zhang   PetscScalar    *array;
2062a30f8f8cSSatish Balay 
2063a30f8f8cSSatish Balay   PetscFunctionBegin;
2064a30f8f8cSSatish Balay   *newmat       = 0;
20657adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2066d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20677adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20681d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
206926283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
207026283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2071e1b6402fSHong Zhang 
2072d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2073273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
207482327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20757fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20767fff6886SHong Zhang 
2077b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2078a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2079a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2080a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2081a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2082a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2083a30f8f8cSSatish Balay 
2084899cda47SBarry Smith 
2085a30f8f8cSSatish Balay   a->size         = oldmat->size;
2086a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2087a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2088a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2089a30f8f8cSSatish Balay   a->rowindices   = 0;
2090a30f8f8cSSatish Balay   a->rowvalues    = 0;
2091a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2092a30f8f8cSSatish Balay   a->barray       = 0;
2093899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2094899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2095899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2096899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2097a30f8f8cSSatish Balay 
2098a30f8f8cSSatish Balay   /* hash table stuff */
2099a30f8f8cSSatish Balay   a->ht           = 0;
2100a30f8f8cSSatish Balay   a->hd           = 0;
2101a30f8f8cSSatish Balay   a->ht_size      = 0;
2102a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2103a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2104a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2105a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2106a30f8f8cSSatish Balay 
2107899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2108a30f8f8cSSatish Balay   if (oldmat->colmap) {
2109a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2110a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2111a30f8f8cSSatish Balay #else
21121302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
211352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21141302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2115a30f8f8cSSatish Balay #endif
2116a30f8f8cSSatish Balay   } else a->colmap = 0;
2117387bc808SHong Zhang 
2118a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21191302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
212052e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21211302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2122a30f8f8cSSatish Balay   } else a->garray = 0;
2123a30f8f8cSSatish Balay 
2124533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2125a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
212652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2127a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
212852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
212982327fa8SHong Zhang 
213082327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
213152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
213282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
213352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2134387bc808SHong Zhang 
2135387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21361ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2137387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2138387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21391ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21401ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2141387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21421ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
214352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
214452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
214552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
214652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
214752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2148387bc808SHong Zhang 
2149387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2150387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2151387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
215252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
215382327fa8SHong Zhang 
2154a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
215552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2156a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
215752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21587adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2159a30f8f8cSSatish Balay   *newmat = mat;
2160a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2161a30f8f8cSSatish Balay }
2162a30f8f8cSSatish Balay 
21634a2ae208SSatish Balay #undef __FUNCT__
21645bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2165112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
216695936485SShri Abhyankar {
216795936485SShri Abhyankar   PetscErrorCode ierr;
216895936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
216995936485SShri Abhyankar   PetscScalar    *vals,*buf;
217095936485SShri Abhyankar   MPI_Comm       comm = ((PetscObject)viewer)->comm;
217195936485SShri Abhyankar   MPI_Status     status;
217295936485SShri Abhyankar   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
217395936485SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
217495936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
217595936485SShri Abhyankar   PetscInt       bs=1,Mbs,mbs,extra_rows;
217695936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
217795936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
217895936485SShri Abhyankar   int            fd;
217995936485SShri Abhyankar 
218095936485SShri Abhyankar   PetscFunctionBegin;
218195936485SShri Abhyankar   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
218295936485SShri Abhyankar     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
218395936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
218495936485SShri Abhyankar 
218595936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
218695936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
218795936485SShri Abhyankar   if (!rank) {
218895936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
218995936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
219095936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
219195936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
219295936485SShri Abhyankar   }
219395936485SShri Abhyankar 
219495936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
219595936485SShri Abhyankar 
219695936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
219795936485SShri Abhyankar   M = header[1]; N = header[2];
219895936485SShri Abhyankar 
219995936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
220095936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
220195936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
220295936485SShri Abhyankar 
220395936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
220495936485SShri Abhyankar   if (sizesset) {
220595936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
220695936485SShri Abhyankar   }
2207abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2208abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
220995936485SShri Abhyankar 
221095936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
221195936485SShri Abhyankar 
221295936485SShri Abhyankar   /*
221395936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
221495936485SShri Abhyankar      divisible by the blocksize
221595936485SShri Abhyankar   */
221695936485SShri Abhyankar   Mbs        = M/bs;
221795936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
221895936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
221995936485SShri Abhyankar   else                  Mbs++;
222095936485SShri Abhyankar   if (extra_rows &&!rank) {
222195936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
222295936485SShri Abhyankar   }
222395936485SShri Abhyankar 
222495936485SShri Abhyankar   /* determine ownership of all rows */
222595936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
222695936485SShri Abhyankar     mbs        = Mbs/size + ((Mbs % size) > rank);
222795936485SShri Abhyankar     m          = mbs*bs;
222895936485SShri Abhyankar   } else { /* User Set */
222995936485SShri Abhyankar     m          = newmat->rmap->n;
223095936485SShri Abhyankar     mbs        = m/bs;
223195936485SShri Abhyankar   }
223295936485SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
223395936485SShri Abhyankar   mmbs       = PetscMPIIntCast(mbs);
223495936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
223595936485SShri Abhyankar   rowners[0] = 0;
223695936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
223795936485SShri Abhyankar   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
223895936485SShri Abhyankar   rstart = rowners[rank];
223995936485SShri Abhyankar   rend   = rowners[rank+1];
224095936485SShri Abhyankar 
224195936485SShri Abhyankar   /* distribute row lengths to all processors */
224295936485SShri Abhyankar   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
224395936485SShri Abhyankar   if (!rank) {
224495936485SShri Abhyankar     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
224595936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
224695936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
224795936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
224895936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
224995936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
225095936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
225195936485SShri Abhyankar   } else {
225295936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
225395936485SShri Abhyankar   }
225495936485SShri Abhyankar 
225595936485SShri Abhyankar   if (!rank) {   /* procs[0] */
225695936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
225795936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
225895936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
225995936485SShri Abhyankar     for (i=0; i<size; i++) {
226095936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
226195936485SShri Abhyankar         procsnz[i] += rowlengths[j];
226295936485SShri Abhyankar       }
226395936485SShri Abhyankar     }
226495936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
226595936485SShri Abhyankar 
226695936485SShri Abhyankar     /* determine max buffer needed and allocate it */
226795936485SShri Abhyankar     maxnz = 0;
226895936485SShri Abhyankar     for (i=0; i<size; i++) {
226995936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
227095936485SShri Abhyankar     }
227195936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
227295936485SShri Abhyankar 
227395936485SShri Abhyankar     /* read in my part of the matrix column indices  */
227495936485SShri Abhyankar     nz     = procsnz[0];
227595936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
227695936485SShri Abhyankar     mycols = ibuf;
227795936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
227895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
227995936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
228095936485SShri Abhyankar 
228195936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
228295936485SShri Abhyankar     for (i=1; i<size-1; i++) {
228395936485SShri Abhyankar       nz   = procsnz[i];
228495936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
228595936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
228695936485SShri Abhyankar     }
228795936485SShri Abhyankar     /* read in the stuff for the last proc */
228895936485SShri Abhyankar     if (size != 1) {
228995936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
229095936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
229195936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
229295936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
229395936485SShri Abhyankar     }
229495936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
229595936485SShri Abhyankar   } else {  /* procs[i], i>0 */
229695936485SShri Abhyankar     /* determine buffer space needed for message */
229795936485SShri Abhyankar     nz = 0;
229895936485SShri Abhyankar     for (i=0; i<m; i++) {
229995936485SShri Abhyankar       nz += locrowlens[i];
230095936485SShri Abhyankar     }
230195936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
230295936485SShri Abhyankar     mycols = ibuf;
230395936485SShri Abhyankar     /* receive message of column indices*/
230495936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
230595936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
230695936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
230795936485SShri Abhyankar   }
230895936485SShri Abhyankar 
230995936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
231095936485SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
231195936485SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
231295936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
231395936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
231495936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
231595936485SShri Abhyankar   rowcount = 0;
231695936485SShri Abhyankar   nzcount  = 0;
231795936485SShri Abhyankar   for (i=0; i<mbs; i++) {
231895936485SShri Abhyankar     dcount  = 0;
231995936485SShri Abhyankar     odcount = 0;
232095936485SShri Abhyankar     for (j=0; j<bs; j++) {
232195936485SShri Abhyankar       kmax = locrowlens[rowcount];
232295936485SShri Abhyankar       for (k=0; k<kmax; k++) {
232395936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
232495936485SShri Abhyankar         if (!mask[tmp]) {
232595936485SShri Abhyankar           mask[tmp] = 1;
232695936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
232795936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
232895936485SShri Abhyankar         }
232995936485SShri Abhyankar       }
233095936485SShri Abhyankar       rowcount++;
233195936485SShri Abhyankar     }
233295936485SShri Abhyankar 
233395936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
233495936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
233595936485SShri Abhyankar 
233695936485SShri Abhyankar     /* zero out the mask elements we set */
233795936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
233895936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
233995936485SShri Abhyankar   }
234095936485SShri Abhyankar     if (!sizesset) {
234195936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
234295936485SShri Abhyankar   }
234395936485SShri Abhyankar   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
234495936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
234595936485SShri Abhyankar 
234695936485SShri Abhyankar   if (!rank) {
234795936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
234895936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
234995936485SShri Abhyankar     nz = procsnz[0];
235095936485SShri Abhyankar     vals = buf;
235195936485SShri Abhyankar     mycols = ibuf;
235295936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
235395936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
235495936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
235595936485SShri Abhyankar 
235695936485SShri Abhyankar     /* insert into matrix */
235795936485SShri Abhyankar     jj      = rstart*bs;
235895936485SShri Abhyankar     for (i=0; i<m; i++) {
235995936485SShri Abhyankar       ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
236095936485SShri Abhyankar       mycols += locrowlens[i];
236195936485SShri Abhyankar       vals   += locrowlens[i];
236295936485SShri Abhyankar       jj++;
236395936485SShri Abhyankar     }
236495936485SShri Abhyankar 
236595936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
236695936485SShri Abhyankar     for (i=1; i<size-1; i++) {
236795936485SShri Abhyankar       nz   = procsnz[i];
236895936485SShri Abhyankar       vals = buf;
236995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
237095936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
237195936485SShri Abhyankar     }
237295936485SShri Abhyankar     /* the last proc */
237395936485SShri Abhyankar     if (size != 1){
237495936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
237595936485SShri Abhyankar       vals = buf;
237695936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
237795936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
237895936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
237995936485SShri Abhyankar     }
238095936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
238195936485SShri Abhyankar 
238295936485SShri Abhyankar   } else {
238395936485SShri Abhyankar     /* receive numeric values */
238495936485SShri Abhyankar     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
238595936485SShri Abhyankar 
238695936485SShri Abhyankar     /* receive message of values*/
238795936485SShri Abhyankar     vals   = buf;
238895936485SShri Abhyankar     mycols = ibuf;
238995936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
239095936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
239195936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
239295936485SShri Abhyankar 
239395936485SShri Abhyankar     /* insert into matrix */
239495936485SShri Abhyankar     jj      = rstart*bs;
239595936485SShri Abhyankar     for (i=0; i<m; i++) {
239695936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
239795936485SShri Abhyankar       mycols += locrowlens[i];
239895936485SShri Abhyankar       vals   += locrowlens[i];
239995936485SShri Abhyankar       jj++;
240095936485SShri Abhyankar     }
240195936485SShri Abhyankar   }
240295936485SShri Abhyankar 
240395936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
240495936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
240595936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
240695936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
240795936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
240895936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
240995936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
241095936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
241195936485SShri Abhyankar   PetscFunctionReturn(0);
241295936485SShri Abhyankar }
241395936485SShri Abhyankar 
241495936485SShri Abhyankar #undef __FUNCT__
24154a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2416dcf5cc72SBarry Smith /*XXXXX@
2417a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2418a30f8f8cSSatish Balay 
2419a30f8f8cSSatish Balay    Input Parameters:
2420a30f8f8cSSatish Balay .  mat  - the matrix
2421a30f8f8cSSatish Balay .  fact - factor
2422a30f8f8cSSatish Balay 
2423c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2424a30f8f8cSSatish Balay 
2425a30f8f8cSSatish Balay    Level: advanced
2426a30f8f8cSSatish Balay 
2427a30f8f8cSSatish Balay   Notes:
2428a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2429a30f8f8cSSatish Balay 
2430a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2431a30f8f8cSSatish Balay 
2432a30f8f8cSSatish Balay .seealso: MatSetOption()
2433dcf5cc72SBarry Smith @XXXXX*/
2434dcf5cc72SBarry Smith 
243524d5174aSHong Zhang 
24364a2ae208SSatish Balay #undef __FUNCT__
2437985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2438985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
243924d5174aSHong Zhang {
244024d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2441f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2442ca54ac64SHong Zhang   PetscReal      atmp;
244387828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2444dfbe8321SBarry Smith   PetscErrorCode ierr;
24451302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24461302d50aSBarry Smith   PetscMPIInt    rank,size;
24471302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
244887828ca2SBarry Smith   PetscScalar    *va;
24498a1c53f2SBarry Smith   MatScalar      *ba;
2450f4c0e9e4SHong Zhang   MPI_Status     stat;
245124d5174aSHong Zhang 
245224d5174aSHong Zhang   PetscFunctionBegin;
2453e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2454985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24551ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2456f4c0e9e4SHong Zhang 
24577adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24587adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2459f4c0e9e4SHong Zhang 
2460d0f46423SBarry Smith   bs   = A->rmap->bs;
2461f4c0e9e4SHong Zhang   mbs  = a->mbs;
2462f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2463f4c0e9e4SHong Zhang   ba   = b->a;
2464f4c0e9e4SHong Zhang   bi   = b->i;
2465f4c0e9e4SHong Zhang   bj   = b->j;
2466f4c0e9e4SHong Zhang 
2467f4c0e9e4SHong Zhang   /* find ownerships */
2468d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2469f4c0e9e4SHong Zhang 
2470f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
247182502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2472ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2473f4c0e9e4SHong Zhang 
2474f4c0e9e4SHong Zhang   /* row_max for B */
2475b8475685SHong Zhang   if (rank != size-1){
2476f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2477f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2478f4c0e9e4SHong Zhang       brow  = bs*i;
2479f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2480f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2481f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2482ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
248304d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2484f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2485f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2486ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2487ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2488f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2489f4c0e9e4SHong Zhang           }
2490f4c0e9e4SHong Zhang         }
2491f4c0e9e4SHong Zhang         bj++;
2492f4c0e9e4SHong Zhang       }
2493f4c0e9e4SHong Zhang     }
2494f4c0e9e4SHong Zhang 
2495f4c0e9e4SHong Zhang     /* send values to its owners */
2496f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2497f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2498ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24997adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2500ca54ac64SHong Zhang     }
2501f4c0e9e4SHong Zhang   }
2502f4c0e9e4SHong Zhang 
2503f4c0e9e4SHong Zhang   /* receive values */
2504ca54ac64SHong Zhang   if (rank){
2505f4c0e9e4SHong Zhang     rvalues = work;
2506ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2507f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
25087adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2509f4c0e9e4SHong Zhang       /* process values */
2510f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2511ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2512f4c0e9e4SHong Zhang       }
2513f4c0e9e4SHong Zhang     }
2514ca54ac64SHong Zhang   }
2515f4c0e9e4SHong Zhang 
25161ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2517ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
251824d5174aSHong Zhang   PetscFunctionReturn(0);
251924d5174aSHong Zhang }
25202798e883SHong Zhang 
25212798e883SHong Zhang #undef __FUNCT__
252241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
252341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25242798e883SHong Zhang {
25252798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2526dfbe8321SBarry Smith   PetscErrorCode    ierr;
2527d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25283649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2529ffe4fb16SHong Zhang   Vec               bb1;
25303649974fSBarry Smith   const PetscScalar *b;
2531ffe4fb16SHong Zhang 
2532ffe4fb16SHong Zhang   PetscFunctionBegin;
2533e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2534e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2535ffe4fb16SHong Zhang 
2536a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
253741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2538a2b30743SBarry Smith     PetscFunctionReturn(0);
2539a2b30743SBarry Smith   }
2540a2b30743SBarry Smith 
2541ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2542ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
254341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2544ffe4fb16SHong Zhang       its--;
2545ffe4fb16SHong Zhang     }
2546ffe4fb16SHong Zhang 
2547ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2548ffe4fb16SHong Zhang     while (its--){
2549ffe4fb16SHong Zhang 
2550ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2551ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2552ffe4fb16SHong Zhang 
2553ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25541ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25551ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2556ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25571ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2558ffe4fb16SHong Zhang 
2559efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2560ffe4fb16SHong Zhang 
2561ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25621ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25633649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2564ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25651ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2566ffe4fb16SHong Zhang 
2567ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2568fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2569ffe4fb16SHong Zhang 
2570ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25711ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2572a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2573ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2574ffe4fb16SHong Zhang 
2575ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2576ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2577ffe4fb16SHong Zhang 
2578ffe4fb16SHong Zhang       /* local diagonal sweep */
257941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2580ffe4fb16SHong Zhang     }
2581ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2582fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
258341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2584fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
258541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2586fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2587fa22f6d0SBarry Smith     Vec               xx1;
2588fa22f6d0SBarry Smith     PetscTruth        hasop;
258920f1ed55SBarry Smith     const PetscScalar *diag;
2590887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
259120f1ed55SBarry Smith     PetscInt          i,n;
2592fa22f6d0SBarry Smith 
2593fa22f6d0SBarry Smith     if (!mat->xx1) {
2594fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2595fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2596fa22f6d0SBarry Smith     }
2597fa22f6d0SBarry Smith     xx1 = mat->xx1;
2598fa22f6d0SBarry Smith     bb1 = mat->bb1;
2599fa22f6d0SBarry Smith 
260041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2601fa22f6d0SBarry Smith 
2602fa22f6d0SBarry Smith     if (!mat->diag) {
2603effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2604fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2605fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2606fa22f6d0SBarry Smith     }
2607fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2608fa22f6d0SBarry Smith 
2609fa22f6d0SBarry Smith     if (hasop) {
2610fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2611887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
261220f1ed55SBarry Smith     } else {
261320f1ed55SBarry Smith       /*
261420f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
261520f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2616887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
261720f1ed55SBarry Smith       */
261820f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26193649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26203649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
262120f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
262220f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2623887ee2caSBarry Smith       if (omega == 1.0) {
262420f1ed55SBarry Smith 	for (i=0; i<n; i++) {
262520f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
262620f1ed55SBarry Smith 	}
262720f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2628887ee2caSBarry Smith       } else {
2629887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2630887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2631887ee2caSBarry Smith 	}
2632887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2633887ee2caSBarry Smith       }
263420f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26353649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26363649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
263720f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
263820f1ed55SBarry Smith     }
2639fa22f6d0SBarry Smith 
2640fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2641fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2642fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2643fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2644fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2645fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2646fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2647fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2648fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2649fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2650effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2651fa22f6d0SBarry Smith 
2652fa22f6d0SBarry Smith     /* local sweep */
265341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2654fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2655ffe4fb16SHong Zhang   } else {
2656e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2657ffe4fb16SHong Zhang   }
2658ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2659ffe4fb16SHong Zhang }
2660ffe4fb16SHong Zhang 
2661ffe4fb16SHong Zhang #undef __FUNCT__
266241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
266341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2664ffe4fb16SHong Zhang {
2665ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2666dfbe8321SBarry Smith   PetscErrorCode ierr;
26672798e883SHong Zhang   Vec            lvec1,bb1;
26682798e883SHong Zhang 
26692798e883SHong Zhang   PetscFunctionBegin;
2670e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2671e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26722798e883SHong Zhang 
2673c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26742798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
267541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26762798e883SHong Zhang       its--;
26772798e883SHong Zhang     }
26782798e883SHong Zhang 
26792798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26802798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26812798e883SHong Zhang     while (its--){
2682ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26832798e883SHong Zhang 
26842798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26852798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2686efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26872798e883SHong Zhang 
2688ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26892798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2690ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26912798e883SHong Zhang 
26922798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2693efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26942798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26952798e883SHong Zhang 
2696ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26972798e883SHong Zhang 
2698c14dc6b6SHong Zhang       /* diagonal sweep */
269941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27002798e883SHong Zhang     }
27012798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
27022798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2703c14dc6b6SHong Zhang   } else {
2704e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2705c14dc6b6SHong Zhang   }
27062798e883SHong Zhang   PetscFunctionReturn(0);
27072798e883SHong Zhang }
27082798e883SHong Zhang 
2709