1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 96214f412SHong Zhang #endif 10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 12d24d4204SJose E. Roman #endif 13b147fbf3SStefano Zampini 14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 159371c9d4SSatish Balay static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) { 16b147fbf3SStefano Zampini Mat preallocator; 17b147fbf3SStefano Zampini PetscInt r, rstart, rend; 18b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 19b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 20b147fbf3SStefano Zampini 21b147fbf3SStefano Zampini PetscFunctionBegin; 22b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 23b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 24b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 25b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 269566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 275f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 28b147fbf3SStefano Zampini } 29b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 309566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 319566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 329566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 339566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 349566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 359566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 369566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 379566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 389566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 39b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 40b147fbf3SStefano Zampini PetscInt ncols; 41b147fbf3SStefano Zampini const PetscInt *row; 42b147fbf3SStefano Zampini const PetscScalar *vals; 43b147fbf3SStefano Zampini 44b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 459566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 469566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 4748a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 489566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 49b147fbf3SStefano Zampini } 50b147fbf3SStefano Zampini } 519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 539566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 55b147fbf3SStefano Zampini PetscFunctionReturn(0); 56b147fbf3SStefano Zampini } 57b147fbf3SStefano Zampini 589371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) { 59b147fbf3SStefano Zampini Mat B; 60b147fbf3SStefano Zampini PetscInt r; 61b147fbf3SStefano Zampini 62b147fbf3SStefano Zampini PetscFunctionBegin; 63b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 6428d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 65b147fbf3SStefano Zampini PetscInt bs; 66b147fbf3SStefano Zampini 679566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 699566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 709566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 719566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 729566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 739566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 7528d58a37SPierre Jolivet if (!isdense) { 769566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 779566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 789566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 7928d58a37SPierre Jolivet } else { 809566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 8128d58a37SPierre Jolivet } 8228d58a37SPierre Jolivet } else { 8328d58a37SPierre Jolivet B = *newmat; 849566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 8528d58a37SPierre Jolivet } 86b147fbf3SStefano Zampini 879566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 88b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 89b147fbf3SStefano Zampini PetscInt ncols; 90b147fbf3SStefano Zampini const PetscInt *row; 91b147fbf3SStefano Zampini const PetscScalar *vals; 92b147fbf3SStefano Zampini 939566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 949566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 95eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 96b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 97eb1ec7c1SStefano Zampini PetscInt i; 9848a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 99eb1ec7c1SStefano Zampini } else { 1009566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 101eb1ec7c1SStefano Zampini } 102eb1ec7c1SStefano Zampini #else 1039566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 104eb1ec7c1SStefano Zampini #endif 1059566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 106b147fbf3SStefano Zampini } 1079566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 110b147fbf3SStefano Zampini 111b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1129566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 113b147fbf3SStefano Zampini } else { 114b147fbf3SStefano Zampini *newmat = B; 115b147fbf3SStefano Zampini } 116b147fbf3SStefano Zampini PetscFunctionReturn(0); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 1199371c9d4SSatish Balay PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) { 120f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 121a30f8f8cSSatish Balay 122a30f8f8cSSatish Balay PetscFunctionBegin; 1239566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1249566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 125a30f8f8cSSatish Balay PetscFunctionReturn(0); 126a30f8f8cSSatish Balay } 127a30f8f8cSSatish Balay 1289371c9d4SSatish Balay PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) { 129f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay PetscFunctionBegin; 1329566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1339566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 134a30f8f8cSSatish Balay PetscFunctionReturn(0); 135a30f8f8cSSatish Balay } 136a30f8f8cSSatish Balay 137d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 138a30f8f8cSSatish Balay { \ 139a30f8f8cSSatish Balay brow = row / bs; \ 1409371c9d4SSatish Balay rp = aj + ai[brow]; \ 1419371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 1429371c9d4SSatish Balay rmax = aimax[brow]; \ 1439371c9d4SSatish Balay nrow = ailen[brow]; \ 144a30f8f8cSSatish Balay bcol = col / bs; \ 1459371c9d4SSatish Balay ridx = row % bs; \ 1469371c9d4SSatish Balay cidx = col % bs; \ 1479371c9d4SSatish Balay low = 0; \ 1489371c9d4SSatish Balay high = nrow; \ 149a30f8f8cSSatish Balay while (high - low > 3) { \ 150a30f8f8cSSatish Balay t = (low + high) / 2; \ 151a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 152a30f8f8cSSatish Balay else low = t; \ 153a30f8f8cSSatish Balay } \ 154a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 155a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 156a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 157a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 158a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 159a30f8f8cSSatish Balay else *bap = value; \ 160a30f8f8cSSatish Balay goto a_noinsert; \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay } \ 163a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 1645f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 165fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 166a30f8f8cSSatish Balay N = nrow++ - 1; \ 167a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 1689566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1699566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1709566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 171a30f8f8cSSatish Balay rp[_i] = bcol; \ 172a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 173e56f5c9eSBarry Smith A->nonzerostate++; \ 174a30f8f8cSSatish Balay a_noinsert:; \ 175a30f8f8cSSatish Balay ailen[brow] = nrow; \ 176a30f8f8cSSatish Balay } 177e5e170daSBarry Smith 178d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 179a30f8f8cSSatish Balay { \ 180a30f8f8cSSatish Balay brow = row / bs; \ 1819371c9d4SSatish Balay rp = bj + bi[brow]; \ 1829371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 1839371c9d4SSatish Balay rmax = bimax[brow]; \ 1849371c9d4SSatish Balay nrow = bilen[brow]; \ 185a30f8f8cSSatish Balay bcol = col / bs; \ 1869371c9d4SSatish Balay ridx = row % bs; \ 1879371c9d4SSatish Balay cidx = col % bs; \ 1889371c9d4SSatish Balay low = 0; \ 1899371c9d4SSatish Balay high = nrow; \ 190a30f8f8cSSatish Balay while (high - low > 3) { \ 191a30f8f8cSSatish Balay t = (low + high) / 2; \ 192a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 193a30f8f8cSSatish Balay else low = t; \ 194a30f8f8cSSatish Balay } \ 195a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 196a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 197a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 198a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 199a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 200a30f8f8cSSatish Balay else *bap = value; \ 201a30f8f8cSSatish Balay goto b_noinsert; \ 202a30f8f8cSSatish Balay } \ 203a30f8f8cSSatish Balay } \ 204a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2055f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 206fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 207a30f8f8cSSatish Balay N = nrow++ - 1; \ 208a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2099566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2109566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 212a30f8f8cSSatish Balay rp[_i] = bcol; \ 213a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 214e56f5c9eSBarry Smith B->nonzerostate++; \ 215a30f8f8cSSatish Balay b_noinsert:; \ 216a30f8f8cSSatish Balay bilen[brow] = nrow; \ 217a30f8f8cSSatish Balay } 218a30f8f8cSSatish Balay 219a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 220476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 221a30f8f8cSSatish Balay */ 2229371c9d4SSatish Balay PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) { 223a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 224a30f8f8cSSatish Balay MatScalar value; 225ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2261302d50aSBarry Smith PetscInt i, j, row, col; 227d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 228d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 229d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay /* Some Variables required in the macro */ 232a30f8f8cSSatish Balay Mat A = baij->A; 233a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)(A)->data; 2341302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 235a30f8f8cSSatish Balay MatScalar *aa = a->a; 236a30f8f8cSSatish Balay 237a30f8f8cSSatish Balay Mat B = baij->B; 238a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 2391302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 240a30f8f8cSSatish Balay MatScalar *ba = b->a; 241a30f8f8cSSatish Balay 2421302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 2431302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 244a30f8f8cSSatish Balay MatScalar *ap, *bap; 245a30f8f8cSSatish Balay 246a30f8f8cSSatish Balay /* for stash */ 2470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2480298fd71SBarry Smith MatScalar *v_loc = NULL; 249a30f8f8cSSatish Balay 250a30f8f8cSSatish Balay PetscFunctionBegin; 251a30f8f8cSSatish Balay if (!baij->donotstash) { 25259ffdab8SBarry Smith if (n > baij->n_loc) { 2539566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 2549566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 2559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 2569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 25726fbe8dcSKarl Rupp 25859ffdab8SBarry Smith baij->n_loc = n; 25959ffdab8SBarry Smith } 26059ffdab8SBarry Smith in_loc = baij->in_loc; 26159ffdab8SBarry Smith v_loc = baij->v_loc; 262a30f8f8cSSatish Balay } 263a30f8f8cSSatish Balay 264a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 265a30f8f8cSSatish Balay if (im[i] < 0) continue; 2665f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 267a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 268a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 269a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 27001b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 27101b2bd88SHong Zhang if (a->ignore_ltriangular) { 27201b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 27326fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 27401b2bd88SHong Zhang } 275a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 276a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 2779371c9d4SSatish Balay brow = row / bs; 2789371c9d4SSatish Balay bcol = col / bs; 279a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 280db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 281db4deed7SKarl Rupp else value = v[i + j * m]; 282d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 2839566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 284f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 285f7d195e4SLawrence Mitchell continue; 286f7d195e4SLawrence Mitchell } else { 287f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 288f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 289a30f8f8cSSatish Balay if (mat->was_assembled) { 29048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 291a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2929566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] / bs + 1, &col)); 29371730473SSatish Balay col = col - 1; 294a30f8f8cSSatish Balay #else 29571730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 296a30f8f8cSSatish Balay #endif 297a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ *)(baij->A->data))->nonew) { 2989566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 299a30f8f8cSSatish Balay col = in[j]; 300a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 301a30f8f8cSSatish Balay B = baij->B; 302a30f8f8cSSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 3039371c9d4SSatish Balay bimax = b->imax; 3049371c9d4SSatish Balay bi = b->i; 3059371c9d4SSatish Balay bilen = b->ilen; 3069371c9d4SSatish Balay bj = b->j; 307a30f8f8cSSatish Balay ba = b->a; 30871730473SSatish Balay } else col += in[j] % bs; 309a30f8f8cSSatish Balay } else col = in[j]; 310db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 311db4deed7SKarl Rupp else value = v[i + j * m]; 312d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3139566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay } else { /* off processor entry */ 3175f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 318a30f8f8cSSatish Balay if (!baij->donotstash) { 3195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 320a30f8f8cSSatish Balay n_loc = 0; 321a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 322f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 323a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 324a30f8f8cSSatish Balay if (roworiented) { 325a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 326a30f8f8cSSatish Balay } else { 327a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 328a30f8f8cSSatish Balay } 329a30f8f8cSSatish Balay n_loc++; 330a30f8f8cSSatish Balay } 3319566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 332a30f8f8cSSatish Balay } 333a30f8f8cSSatish Balay } 334a30f8f8cSSatish Balay } 335a30f8f8cSSatish Balay PetscFunctionReturn(0); 336a30f8f8cSSatish Balay } 337a30f8f8cSSatish Balay 3389371c9d4SSatish Balay static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) { 33936bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 34036bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 34136bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 34236bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 34336bd2089SBarry Smith PetscBool roworiented = a->roworiented; 34436bd2089SBarry Smith const PetscScalar *value = v; 34536bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 34636bd2089SBarry Smith 34736bd2089SBarry Smith PetscFunctionBegin; 34836bd2089SBarry Smith if (col < row) { 34936bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 35036bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 35136bd2089SBarry Smith } 35236bd2089SBarry Smith rp = aj + ai[row]; 35336bd2089SBarry Smith ap = aa + bs2 * ai[row]; 35436bd2089SBarry Smith rmax = imax[row]; 35536bd2089SBarry Smith nrow = ailen[row]; 35636bd2089SBarry Smith value = v; 35736bd2089SBarry Smith low = 0; 35836bd2089SBarry Smith high = nrow; 35936bd2089SBarry Smith 36036bd2089SBarry Smith while (high - low > 7) { 36136bd2089SBarry Smith t = (low + high) / 2; 36236bd2089SBarry Smith if (rp[t] > col) high = t; 36336bd2089SBarry Smith else low = t; 36436bd2089SBarry Smith } 36536bd2089SBarry Smith for (i = low; i < high; i++) { 36636bd2089SBarry Smith if (rp[i] > col) break; 36736bd2089SBarry Smith if (rp[i] == col) { 36836bd2089SBarry Smith bap = ap + bs2 * i; 36936bd2089SBarry Smith if (roworiented) { 37036bd2089SBarry Smith if (is == ADD_VALUES) { 37136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 372ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 37336bd2089SBarry Smith } 37436bd2089SBarry Smith } else { 37536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 376ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 37736bd2089SBarry Smith } 37836bd2089SBarry Smith } 37936bd2089SBarry Smith } else { 38036bd2089SBarry Smith if (is == ADD_VALUES) { 38136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 382ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 386ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 38736bd2089SBarry Smith } 38836bd2089SBarry Smith } 38936bd2089SBarry Smith } 39036bd2089SBarry Smith goto noinsert2; 39136bd2089SBarry Smith } 39236bd2089SBarry Smith } 39336bd2089SBarry Smith if (nonew == 1) goto noinsert2; 3945f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 39536bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3969371c9d4SSatish Balay N = nrow++ - 1; 3979371c9d4SSatish Balay high++; 39836bd2089SBarry Smith /* shift up all the later entries in this row */ 3999566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4009566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 40136bd2089SBarry Smith rp[i] = col; 40236bd2089SBarry Smith bap = ap + bs2 * i; 40336bd2089SBarry Smith if (roworiented) { 40436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 405ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 40636bd2089SBarry Smith } 40736bd2089SBarry Smith } else { 40836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 409ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 41036bd2089SBarry Smith } 41136bd2089SBarry Smith } 41236bd2089SBarry Smith noinsert2:; 41336bd2089SBarry Smith ailen[row] = nrow; 41436bd2089SBarry Smith PetscFunctionReturn(0); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith 41736bd2089SBarry Smith /* 41836bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 41936bd2089SBarry Smith */ 4209371c9d4SSatish Balay static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) { 42136bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 42236bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 42336bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 42436bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 42536bd2089SBarry Smith PetscBool roworiented = a->roworiented; 42636bd2089SBarry Smith const PetscScalar *value = v; 42736bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 42836bd2089SBarry Smith 42936bd2089SBarry Smith PetscFunctionBegin; 43036bd2089SBarry Smith rp = aj + ai[row]; 43136bd2089SBarry Smith ap = aa + bs2 * ai[row]; 43236bd2089SBarry Smith rmax = imax[row]; 43336bd2089SBarry Smith nrow = ailen[row]; 43436bd2089SBarry Smith low = 0; 43536bd2089SBarry Smith high = nrow; 43636bd2089SBarry Smith value = v; 43736bd2089SBarry Smith while (high - low > 7) { 43836bd2089SBarry Smith t = (low + high) / 2; 43936bd2089SBarry Smith if (rp[t] > col) high = t; 44036bd2089SBarry Smith else low = t; 44136bd2089SBarry Smith } 44236bd2089SBarry Smith for (i = low; i < high; i++) { 44336bd2089SBarry Smith if (rp[i] > col) break; 44436bd2089SBarry Smith if (rp[i] == col) { 44536bd2089SBarry Smith bap = ap + bs2 * i; 44636bd2089SBarry Smith if (roworiented) { 44736bd2089SBarry Smith if (is == ADD_VALUES) { 44836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 449ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 45036bd2089SBarry Smith } 45136bd2089SBarry Smith } else { 45236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 453ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 45436bd2089SBarry Smith } 45536bd2089SBarry Smith } 45636bd2089SBarry Smith } else { 45736bd2089SBarry Smith if (is == ADD_VALUES) { 45836bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 459ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 46036bd2089SBarry Smith bap += bs; 46136bd2089SBarry Smith } 46236bd2089SBarry Smith } else { 46336bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 464ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 46536bd2089SBarry Smith bap += bs; 46636bd2089SBarry Smith } 46736bd2089SBarry Smith } 46836bd2089SBarry Smith } 46936bd2089SBarry Smith goto noinsert2; 47036bd2089SBarry Smith } 47136bd2089SBarry Smith } 47236bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4735f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 47436bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4759371c9d4SSatish Balay N = nrow++ - 1; 4769371c9d4SSatish Balay high++; 47736bd2089SBarry Smith /* shift up all the later entries in this row */ 4789566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4799566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 48036bd2089SBarry Smith rp[i] = col; 48136bd2089SBarry Smith bap = ap + bs2 * i; 48236bd2089SBarry Smith if (roworiented) { 48336bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 484ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 48536bd2089SBarry Smith } 48636bd2089SBarry Smith } else { 48736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 488ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 48936bd2089SBarry Smith } 49036bd2089SBarry Smith } 49136bd2089SBarry Smith noinsert2:; 49236bd2089SBarry Smith ailen[row] = nrow; 49336bd2089SBarry Smith PetscFunctionReturn(0); 49436bd2089SBarry Smith } 49536bd2089SBarry Smith 49636bd2089SBarry Smith /* 49736bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 49836bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 49936bd2089SBarry Smith */ 5009371c9d4SSatish Balay PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) { 5010880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 502f15d580aSBarry Smith const MatScalar *value; 503f15d580aSBarry Smith MatScalar *barray = baij->barray; 504ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 505899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 506476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 507476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5080880e062SHong Zhang 509a30f8f8cSSatish Balay PetscFunctionBegin; 5100880e062SHong Zhang if (!barray) { 5119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5120880e062SHong Zhang baij->barray = barray; 5130880e062SHong Zhang } 5140880e062SHong Zhang 5150880e062SHong Zhang if (roworiented) { 5160880e062SHong Zhang stepval = (n - 1) * bs; 5170880e062SHong Zhang } else { 5180880e062SHong Zhang stepval = (m - 1) * bs; 5190880e062SHong Zhang } 5200880e062SHong Zhang for (i = 0; i < m; i++) { 5210880e062SHong Zhang if (im[i] < 0) continue; 5226bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5230880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5240880e062SHong Zhang row = im[i] - rstart; 5250880e062SHong Zhang for (j = 0; j < n; j++) { 526f3f98c53SJed Brown if (im[i] > in[j]) { 527f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 528e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 529f3f98c53SJed Brown } 5300880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5310880e062SHong Zhang if ((roworiented) && (n == 1)) { 532f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 5330880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 534f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 5350880e062SHong Zhang } else { /* Here a copy is required */ 5360880e062SHong Zhang if (roworiented) { 5370880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 5380880e062SHong Zhang } else { 5390880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 5400880e062SHong Zhang } 5410880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 542ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 5430880e062SHong Zhang } 5440880e062SHong Zhang barray -= bs2; 5450880e062SHong Zhang } 5460880e062SHong Zhang 5470880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5480880e062SHong Zhang col = in[j] - cstart; 5499566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 550f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 551f7d195e4SLawrence Mitchell continue; 552f7d195e4SLawrence Mitchell } else { 553f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 5540880e062SHong Zhang if (mat->was_assembled) { 55548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 5560880e062SHong Zhang 5572515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5580880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5599371c9d4SSatish Balay { 5609371c9d4SSatish Balay PetscInt data; 5619566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &data)); 56208401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 5630880e062SHong Zhang } 5640880e062SHong Zhang #else 56508401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 5660880e062SHong Zhang #endif 5670880e062SHong Zhang #endif 5680880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5699566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &col)); 5700880e062SHong Zhang col = (col - 1) / bs; 5710880e062SHong Zhang #else 5720880e062SHong Zhang col = (baij->colmap[in[j]] - 1) / bs; 5730880e062SHong Zhang #endif 5740880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 5759566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 5760880e062SHong Zhang col = in[j]; 5770880e062SHong Zhang } 57826fbe8dcSKarl Rupp } else col = in[j]; 5799566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 5800880e062SHong Zhang } 5810880e062SHong Zhang } 5820880e062SHong Zhang } else { 5835f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 5840880e062SHong Zhang if (!baij->donotstash) { 5850880e062SHong Zhang if (roworiented) { 5869566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 5870880e062SHong Zhang } else { 5889566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 5890880e062SHong Zhang } 5900880e062SHong Zhang } 5910880e062SHong Zhang } 5920880e062SHong Zhang } 5930880e062SHong Zhang PetscFunctionReturn(0); 594a30f8f8cSSatish Balay } 595a30f8f8cSSatish Balay 5969371c9d4SSatish Balay PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) { 597f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 598d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 599d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 600a30f8f8cSSatish Balay 601a30f8f8cSSatish Balay PetscFunctionBegin; 602a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 60354c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 60454c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 605a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 606a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 607a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 60854c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 60954c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 610a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 611a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6129566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 613a30f8f8cSSatish Balay } else { 61448a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 615a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 6169566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, idxn[j] / bs + 1, &data)); 617a30f8f8cSSatish Balay data--; 618a30f8f8cSSatish Balay #else 619a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 620a30f8f8cSSatish Balay #endif 621a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 622a30f8f8cSSatish Balay else { 623a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6249566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 625a30f8f8cSSatish Balay } 626a30f8f8cSSatish Balay } 627a30f8f8cSSatish Balay } 628f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 629a30f8f8cSSatish Balay } 630a30f8f8cSSatish Balay PetscFunctionReturn(0); 631a30f8f8cSSatish Balay } 632a30f8f8cSSatish Balay 6339371c9d4SSatish Balay PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) { 634a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 635a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 636a30f8f8cSSatish Balay 637a30f8f8cSSatish Balay PetscFunctionBegin; 638a30f8f8cSSatish Balay if (baij->size == 1) { 6399566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 640a30f8f8cSSatish Balay } else { 641a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 6439566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 6449371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 6459371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 6469566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 6479371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 6489371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 6491c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 6508f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 6519566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 6520b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6530b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 6540b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 6550b8dc8d2SHong Zhang PetscReal *rsum, *rsum2, vabs; 656899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 657d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 6580b8dc8d2SHong Zhang MatScalar *v; 6590b8dc8d2SHong Zhang 6609566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2)); 6619566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 6620b8dc8d2SHong Zhang /* Amat */ 6639371c9d4SSatish Balay v = amat->a; 6649371c9d4SSatish Balay jj = amat->j; 6650b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 6660b8dc8d2SHong Zhang grow = bs * (rstart + brow); 6670b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 6680b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 6699371c9d4SSatish Balay gcol = bs * (rstart + *jj); 6709371c9d4SSatish Balay jj++; 6710b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 6720b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 6739371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 6749371c9d4SSatish Balay v++; 6750b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 6760b8dc8d2SHong Zhang /* non-diagonal block */ 6770b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 6780b8dc8d2SHong Zhang } 6790b8dc8d2SHong Zhang } 6800b8dc8d2SHong Zhang } 6819566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 6820b8dc8d2SHong Zhang } 6830b8dc8d2SHong Zhang /* Bmat */ 6849371c9d4SSatish Balay v = bmat->a; 6859371c9d4SSatish Balay jj = bmat->j; 6860b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 6870b8dc8d2SHong Zhang grow = bs * (rstart + brow); 6880b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 6890b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 6909371c9d4SSatish Balay gcol = bs * garray[*jj]; 6919371c9d4SSatish Balay jj++; 6920b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 6930b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 6949371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 6959371c9d4SSatish Balay v++; 6960b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 6970b8dc8d2SHong Zhang rsum[grow + row] += vabs; 6980b8dc8d2SHong Zhang } 6990b8dc8d2SHong Zhang } 7000b8dc8d2SHong Zhang } 7019566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7020b8dc8d2SHong Zhang } 7031c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7040b8dc8d2SHong Zhang *norm = 0.0; 705d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 7060b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7070b8dc8d2SHong Zhang } 7089566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum, rsum2)); 709f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay PetscFunctionReturn(0); 712a30f8f8cSSatish Balay } 713a30f8f8cSSatish Balay 7149371c9d4SSatish Balay PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) { 715a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7161302d50aSBarry Smith PetscInt nstash, reallocs; 717a30f8f8cSSatish Balay 718a30f8f8cSSatish Balay PetscFunctionBegin; 71926fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 720a30f8f8cSSatish Balay 7219566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7229566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7239566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7249566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7259566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7269566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 727a30f8f8cSSatish Balay PetscFunctionReturn(0); 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 7309371c9d4SSatish Balay PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) { 731a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 732a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 73313f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 734e44c0bd4SBarry Smith PetscInt *row, *col; 735ace3abfcSBarry Smith PetscBool other_disassembled; 73613f74950SBarry Smith PetscMPIInt n; 737ace3abfcSBarry Smith PetscBool r1, r2, r3; 738a30f8f8cSSatish Balay MatScalar *val; 739a30f8f8cSSatish Balay 74091c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 741a30f8f8cSSatish Balay PetscFunctionBegin; 7424cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 743a30f8f8cSSatish Balay while (1) { 7449566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 745a30f8f8cSSatish Balay if (!flg) break; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay for (i = 0; i < n;) { 748a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 74926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 75026fbe8dcSKarl Rupp if (row[j] != rstart) break; 75126fbe8dcSKarl Rupp } 752a30f8f8cSSatish Balay if (j < n) ncols = j - i; 753a30f8f8cSSatish Balay else ncols = n - i; 754a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7559566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 756a30f8f8cSSatish Balay i = j; 757a30f8f8cSSatish Balay } 758a30f8f8cSSatish Balay } 7599566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 760a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 761a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 762a30f8f8cSSatish Balay restore the original flags */ 763a30f8f8cSSatish Balay r1 = baij->roworiented; 764a30f8f8cSSatish Balay r2 = a->roworiented; 76591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 76626fbe8dcSKarl Rupp 767a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 768a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 76926fbe8dcSKarl Rupp 77091c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 771a30f8f8cSSatish Balay while (1) { 7729566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 773a30f8f8cSSatish Balay if (!flg) break; 774a30f8f8cSSatish Balay 775a30f8f8cSSatish Balay for (i = 0; i < n;) { 776a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 77726fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 77826fbe8dcSKarl Rupp if (row[j] != rstart) break; 77926fbe8dcSKarl Rupp } 780a30f8f8cSSatish Balay if (j < n) ncols = j - i; 781a30f8f8cSSatish Balay else ncols = n - i; 7829566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 783a30f8f8cSSatish Balay i = j; 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay } 7869566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 78726fbe8dcSKarl Rupp 788a30f8f8cSSatish Balay baij->roworiented = r1; 789a30f8f8cSSatish Balay a->roworiented = r2; 79026fbe8dcSKarl Rupp 79191c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 792a30f8f8cSSatish Balay } 793a30f8f8cSSatish Balay 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 7959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 796a30f8f8cSSatish Balay 797a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 7986aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 799a30f8f8cSSatish Balay /* 800a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 801a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 802a30f8f8cSSatish Balay */ 803a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 8045f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80548a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay 8089371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8109566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 811a30f8f8cSSatish Balay 8129566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 81326fbe8dcSKarl Rupp 814f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8154f9cfa9eSBarry Smith 8164f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8174f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 818e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 8191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 820e56f5c9eSBarry Smith } 821a30f8f8cSSatish Balay PetscFunctionReturn(0); 822a30f8f8cSSatish Balay } 823a30f8f8cSSatish Balay 824dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8259804daf3SBarry Smith #include <petscdraw.h> 8269371c9d4SSatish Balay static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) { 827a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 828d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8297da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 830ace3abfcSBarry Smith PetscBool iascii, isdraw; 831b0a32e0cSBarry Smith PetscViewer sviewer; 832f3ef73ceSBarry Smith PetscViewerFormat format; 833a30f8f8cSSatish Balay 834a30f8f8cSSatish Balay PetscFunctionBegin; 8359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 8369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 83732077d6dSBarry Smith if (iascii) { 8389566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 839456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 840a30f8f8cSSatish Balay MatInfo info; 8419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 8429566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 8439566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 8449371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 8459371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 8469566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 8479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 8489566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 8499566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 8509566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 8529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 8539566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 854a30f8f8cSSatish Balay PetscFunctionReturn(0); 855fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 8569566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 857a30f8f8cSSatish Balay PetscFunctionReturn(0); 858c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 859c1490034SHong Zhang PetscFunctionReturn(0); 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay 863a30f8f8cSSatish Balay if (isdraw) { 864b0a32e0cSBarry Smith PetscDraw draw; 865ace3abfcSBarry Smith PetscBool isnull; 8669566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 8679566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 86845f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 869a30f8f8cSSatish Balay } 870a30f8f8cSSatish Balay 8717da1fb6eSBarry Smith { 872a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 873a30f8f8cSSatish Balay Mat A; 87465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 87565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 876d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 877a30f8f8cSSatish Balay MatScalar *a; 8783e219373SBarry Smith const char *matname; 879a30f8f8cSSatish Balay 880f204ca49SKris Buschelman /* Should this be the same type as mat? */ 8819566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 882dd400576SPatrick Sanan if (rank == 0) { 8839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 884a30f8f8cSSatish Balay } else { 8859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 886a30f8f8cSSatish Balay } 8879566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 8889566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 8899566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 890a30f8f8cSSatish Balay 891a30f8f8cSSatish Balay /* copy over the A part */ 89265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 8939371c9d4SSatish Balay ai = Aloc->i; 8949371c9d4SSatish Balay aj = Aloc->j; 8959371c9d4SSatish Balay a = Aloc->a; 8969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 897a30f8f8cSSatish Balay 898a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 899e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 90026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 901a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 902e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 903a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9049566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 90526fbe8dcSKarl Rupp col++; 90626fbe8dcSKarl Rupp a += bs; 907a30f8f8cSSatish Balay } 908a30f8f8cSSatish Balay } 909a30f8f8cSSatish Balay } 910a30f8f8cSSatish Balay /* copy over the B part */ 91165d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9129371c9d4SSatish Balay ai = Bloc->i; 9139371c9d4SSatish Balay aj = Bloc->j; 9149371c9d4SSatish Balay a = Bloc->a; 915a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 916e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 91726fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 918a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 919a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 920a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9219566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 92226fbe8dcSKarl Rupp col++; 92326fbe8dcSKarl Rupp a += bs; 924a30f8f8cSSatish Balay } 925a30f8f8cSSatish Balay } 926a30f8f8cSSatish Balay } 9279566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 930a30f8f8cSSatish Balay /* 931a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 932b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 933a30f8f8cSSatish Balay */ 9349566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 9359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 936dd400576SPatrick Sanan if (rank == 0) { 9379566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)(A->data))->A, matname)); 9389566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)(A->data))->A, sviewer)); 939a30f8f8cSSatish Balay } 9409566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 9419566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9429566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 943a30f8f8cSSatish Balay } 944a30f8f8cSSatish Balay PetscFunctionReturn(0); 945a30f8f8cSSatish Balay } 946a30f8f8cSSatish Balay 947618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 948618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 949d1654148SHong Zhang 9509371c9d4SSatish Balay PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) { 951ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 952a30f8f8cSSatish Balay 953a30f8f8cSSatish Balay PetscFunctionBegin; 9549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 9559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 9569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 9579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 958d1654148SHong Zhang if (iascii || isdraw || issocket) { 9599566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 9601baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 961a30f8f8cSSatish Balay PetscFunctionReturn(0); 962a30f8f8cSSatish Balay } 963a30f8f8cSSatish Balay 9649371c9d4SSatish Balay PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) { 965a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 966a30f8f8cSSatish Balay 967a30f8f8cSSatish Balay PetscFunctionBegin; 968a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 969c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N); 970a30f8f8cSSatish Balay #endif 9719566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 9729566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->bstash)); 9739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->A)); 9749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->B)); 975a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 9769566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&baij->colmap)); 977a30f8f8cSSatish Balay #else 9789566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->colmap)); 979a30f8f8cSSatish Balay #endif 9809566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->garray)); 9819566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->lvec)); 9829566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->Mvctx)); 9839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec0)); 9849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec0b)); 9859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1)); 9869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1a)); 9879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1b)); 9889566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->sMvctx)); 9899566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 9909566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->barray)); 9919566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->hd)); 9929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->diag)); 9939566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->bb1)); 9949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->xx1)); 995ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 9969566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->setvaluescopy)); 997a30f8f8cSSatish Balay #endif 9989566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 9999566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 10009566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->rangebs)); 10019566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1002901853e0SKris Buschelman 10039566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 10049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 10059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 10069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 10079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 10086214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 10099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 10106214f412SHong Zhang #endif 1011d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 10129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 1013d24d4204SJose E. Roman #endif 10149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 10159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 1016a30f8f8cSSatish Balay PetscFunctionReturn(0); 1017a30f8f8cSSatish Balay } 1018a30f8f8cSSatish Balay 10199371c9d4SSatish Balay PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) { 1020547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1021eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10226de40e93SBarry Smith PetscScalar *from; 10236de40e93SBarry Smith const PetscScalar *x; 1024547795f9SHong Zhang 1025547795f9SHong Zhang PetscFunctionBegin; 1026547795f9SHong Zhang /* diagonal part */ 10279566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 10289566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b, 0.0)); 1029547795f9SHong Zhang 1030547795f9SHong Zhang /* subdiagonal part */ 10315f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10329566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1033547795f9SHong Zhang 1034547795f9SHong Zhang /* copy x into the vec slvec0 */ 10359566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10369566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1037547795f9SHong Zhang 10389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1041547795f9SHong Zhang 10429566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1044547795f9SHong Zhang /* supperdiagonal part */ 10459566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 1046547795f9SHong Zhang PetscFunctionReturn(0); 1047547795f9SHong Zhang } 1048547795f9SHong Zhang 10499371c9d4SSatish Balay PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) { 1050a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1051eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1052d9ca1df4SBarry Smith PetscScalar *from; 1053d9ca1df4SBarry Smith const PetscScalar *x; 1054a9d4b620SHong Zhang 1055a9d4b620SHong Zhang PetscFunctionBegin; 1056a9d4b620SHong Zhang /* diagonal part */ 10579566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 10589566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b, 0.0)); 1059a9d4b620SHong Zhang 1060a9d4b620SHong Zhang /* subdiagonal part */ 10619566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1062fc165ae2SBarry Smith 1063a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10649566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10659566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1066a9d4b620SHong Zhang 10679566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10689566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10699566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1070fc165ae2SBarry Smith 10719566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10729566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1073a9d4b620SHong Zhang /* supperdiagonal part */ 10749566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 1075a9d4b620SHong Zhang PetscFunctionReturn(0); 1076a9d4b620SHong Zhang } 1077a9d4b620SHong Zhang 10789371c9d4SSatish Balay PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) { 1079eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1080eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1081eb1ec7c1SStefano Zampini PetscScalar *from, zero = 0.0; 1082eb1ec7c1SStefano Zampini const PetscScalar *x; 1083eb1ec7c1SStefano Zampini 1084eb1ec7c1SStefano Zampini PetscFunctionBegin; 1085eb1ec7c1SStefano Zampini /* diagonal part */ 10869566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 10879566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b, zero)); 1088eb1ec7c1SStefano Zampini 1089eb1ec7c1SStefano Zampini /* subdiagonal part */ 10905f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10919566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1092eb1ec7c1SStefano Zampini 1093eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 10949566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10959566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 10969566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1098eb1ec7c1SStefano Zampini 10999566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11009566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1102eb1ec7c1SStefano Zampini 1103eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11049566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 1105eb1ec7c1SStefano Zampini PetscFunctionReturn(0); 1106eb1ec7c1SStefano Zampini } 1107eb1ec7c1SStefano Zampini 11089371c9d4SSatish Balay PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) { 1109de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1110d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1111d9ca1df4SBarry Smith PetscScalar *from, zero = 0.0; 1112d9ca1df4SBarry Smith const PetscScalar *x; 1113a9d4b620SHong Zhang 1114a9d4b620SHong Zhang PetscFunctionBegin; 1115a9d4b620SHong Zhang /* diagonal part */ 11169566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 11179566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b, zero)); 1118a9d4b620SHong Zhang 1119a9d4b620SHong Zhang /* subdiagonal part */ 11209566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1121a9d4b620SHong Zhang 1122a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11239566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11269566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1127a9d4b620SHong Zhang 11289566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11309566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1131a9d4b620SHong Zhang 1132a9d4b620SHong Zhang /* supperdiagonal part */ 11339566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 1134a9d4b620SHong Zhang PetscFunctionReturn(0); 1135a9d4b620SHong Zhang } 1136a9d4b620SHong Zhang 1137a30f8f8cSSatish Balay /* 1138a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1139a30f8f8cSSatish Balay diagonal block 1140a30f8f8cSSatish Balay */ 11419371c9d4SSatish Balay PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) { 1142a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1143a30f8f8cSSatish Balay 1144a30f8f8cSSatish Balay PetscFunctionBegin; 114508401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11469566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 1147a30f8f8cSSatish Balay PetscFunctionReturn(0); 1148a30f8f8cSSatish Balay } 1149a30f8f8cSSatish Balay 11509371c9d4SSatish Balay PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) { 1151a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1152a30f8f8cSSatish Balay 1153a30f8f8cSSatish Balay PetscFunctionBegin; 11549566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11559566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 1156a30f8f8cSSatish Balay PetscFunctionReturn(0); 1157a30f8f8cSSatish Balay } 1158a30f8f8cSSatish Balay 11599371c9d4SSatish Balay PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) { 1160d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1161d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1162d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1163d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1164899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1165d0d4cfc2SHong Zhang 1166a30f8f8cSSatish Balay PetscFunctionBegin; 11675f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1168d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1169d0d4cfc2SHong Zhang 1170d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1171d0d4cfc2SHong Zhang /* 1172d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1173d0d4cfc2SHong Zhang */ 1174d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1175d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1176d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1177d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1178d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 117926fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1180d0d4cfc2SHong Zhang } 11819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1182d0d4cfc2SHong Zhang } 1183d0d4cfc2SHong Zhang 11845f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1185d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1186d0d4cfc2SHong Zhang 11879371c9d4SSatish Balay pvA = &vworkA; 11889371c9d4SSatish Balay pcA = &cworkA; 11899371c9d4SSatish Balay pvB = &vworkB; 11909371c9d4SSatish Balay pcB = &cworkB; 11919371c9d4SSatish Balay if (!v) { 11929371c9d4SSatish Balay pvA = NULL; 11939371c9d4SSatish Balay pvB = NULL; 11949371c9d4SSatish Balay } 11959371c9d4SSatish Balay if (!idx) { 11969371c9d4SSatish Balay pcA = NULL; 11979371c9d4SSatish Balay if (!v) pcB = NULL; 11989371c9d4SSatish Balay } 11999566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12009566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1201d0d4cfc2SHong Zhang nztot = nzA + nzB; 1202d0d4cfc2SHong Zhang 1203d0d4cfc2SHong Zhang cmap = mat->garray; 1204d0d4cfc2SHong Zhang if (v || idx) { 1205d0d4cfc2SHong Zhang if (nztot) { 1206d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1207d0d4cfc2SHong Zhang PetscInt imark = -1; 1208d0d4cfc2SHong Zhang if (v) { 1209d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1210d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1211d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1212d0d4cfc2SHong Zhang else break; 1213d0d4cfc2SHong Zhang } 1214d0d4cfc2SHong Zhang imark = i; 1215d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1216d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1217d0d4cfc2SHong Zhang } 1218d0d4cfc2SHong Zhang if (idx) { 1219d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1220d0d4cfc2SHong Zhang if (imark > -1) { 1221ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1222d0d4cfc2SHong Zhang } else { 1223d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 122426fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1225d0d4cfc2SHong Zhang else break; 1226d0d4cfc2SHong Zhang } 1227d0d4cfc2SHong Zhang imark = i; 1228d0d4cfc2SHong Zhang } 1229d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1230d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1231d0d4cfc2SHong Zhang } 1232d0d4cfc2SHong Zhang } else { 1233f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1234f4259b30SLisandro Dalcin if (v) *v = NULL; 1235d0d4cfc2SHong Zhang } 1236d0d4cfc2SHong Zhang } 1237d0d4cfc2SHong Zhang *nz = nztot; 12389566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12399566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 1240a30f8f8cSSatish Balay PetscFunctionReturn(0); 1241a30f8f8cSSatish Balay } 1242a30f8f8cSSatish Balay 12439371c9d4SSatish Balay PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) { 1244a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1245a30f8f8cSSatish Balay 1246a30f8f8cSSatish Balay PetscFunctionBegin; 12475f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1248a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1249a30f8f8cSSatish Balay PetscFunctionReturn(0); 1250a30f8f8cSSatish Balay } 1251a30f8f8cSSatish Balay 12529371c9d4SSatish Balay PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) { 1253d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1254d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1255d0d4cfc2SHong Zhang 1256d0d4cfc2SHong Zhang PetscFunctionBegin; 1257d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1258d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1259d0d4cfc2SHong Zhang } 12609371c9d4SSatish Balay PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) { 1261d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1262d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1263d0d4cfc2SHong Zhang 1264d0d4cfc2SHong Zhang PetscFunctionBegin; 1265d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1266d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1267d0d4cfc2SHong Zhang } 1268d0d4cfc2SHong Zhang 12699371c9d4SSatish Balay PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) { 12705f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 12715f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 12722726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 12732726fb6dSPierre Jolivet 12749566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 12759566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 12765f80ce2aSJacob Faibussowitsch } 12772726fb6dSPierre Jolivet PetscFunctionReturn(0); 12782726fb6dSPierre Jolivet } 12792726fb6dSPierre Jolivet 12809371c9d4SSatish Balay PetscErrorCode MatRealPart_MPISBAIJ(Mat A) { 128199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 128299cafbc1SBarry Smith 128399cafbc1SBarry Smith PetscFunctionBegin; 12849566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 12859566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 128699cafbc1SBarry Smith PetscFunctionReturn(0); 128799cafbc1SBarry Smith } 128899cafbc1SBarry Smith 12899371c9d4SSatish Balay PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) { 129099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 129199cafbc1SBarry Smith 129299cafbc1SBarry Smith PetscFunctionBegin; 12939566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 12949566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 129599cafbc1SBarry Smith PetscFunctionReturn(0); 129699cafbc1SBarry Smith } 129799cafbc1SBarry Smith 12987dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 129936032a97SHong Zhang Input: isrow - distributed(parallel), 130036032a97SHong Zhang iscol_local - locally owned (seq) 130136032a97SHong Zhang */ 13029371c9d4SSatish Balay PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) { 13038f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13048f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 130536032a97SHong Zhang 130636032a97SHong Zhang PetscFunctionBegin; 13079566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 13091098a8e8SHong Zhang if (sz1 > sz2) { 13101098a8e8SHong Zhang *flg = PETSC_FALSE; 13111098a8e8SHong Zhang PetscFunctionReturn(0); 13121098a8e8SHong Zhang } 13138f46ffcaSHong Zhang 13149566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13168f46ffcaSHong Zhang 13179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13199566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13209566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13219566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13229566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13238f46ffcaSHong Zhang 13248f46ffcaSHong Zhang nmatch = 0; 13258f46ffcaSHong Zhang k = 0; 13268f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13278f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13288f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13299371c9d4SSatish Balay k = j; 13309371c9d4SSatish Balay nmatch++; 13318f46ffcaSHong Zhang break; 13328f46ffcaSHong Zhang } 13338f46ffcaSHong Zhang } 13348f46ffcaSHong Zhang } 13359566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13369566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13379566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13389566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13391098a8e8SHong Zhang if (nmatch < sz1) { 13401098a8e8SHong Zhang *flg = PETSC_FALSE; 13411098a8e8SHong Zhang } else { 13421098a8e8SHong Zhang *flg = PETSC_TRUE; 13431098a8e8SHong Zhang } 134436032a97SHong Zhang PetscFunctionReturn(0); 13458f46ffcaSHong Zhang } 134636032a97SHong Zhang 13479371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) { 134836032a97SHong Zhang IS iscol_local; 134936032a97SHong Zhang PetscInt csize; 135036032a97SHong Zhang PetscBool isequal; 135136032a97SHong Zhang 135236032a97SHong Zhang PetscFunctionBegin; 13539566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 135436032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13559566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13565f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 135736032a97SHong Zhang } else { 1358068661f9SToby Isaac PetscBool issorted; 1359068661f9SToby Isaac 13609566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 13619566063dSJacob Faibussowitsch PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 13629566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 13635f80ce2aSJacob Faibussowitsch PetscCheck(isequal && issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must equal isrow and be sorted"); 13648f46ffcaSHong Zhang } 13658f46ffcaSHong Zhang 13667dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 13679566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat)); 13688f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 13699566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 13718f46ffcaSHong Zhang } 13728f46ffcaSHong Zhang PetscFunctionReturn(0); 13738f46ffcaSHong Zhang } 13748f46ffcaSHong Zhang 13759371c9d4SSatish Balay PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) { 1376a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1377a30f8f8cSSatish Balay 1378a30f8f8cSSatish Balay PetscFunctionBegin; 13799566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 13809566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 1381a30f8f8cSSatish Balay PetscFunctionReturn(0); 1382a30f8f8cSSatish Balay } 1383a30f8f8cSSatish Balay 13849371c9d4SSatish Balay PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) { 1385a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1386a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 13873966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1388a30f8f8cSSatish Balay 1389a30f8f8cSSatish Balay PetscFunctionBegin; 1390d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 139126fbe8dcSKarl Rupp 13929566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 139326fbe8dcSKarl Rupp 13949371c9d4SSatish Balay isend[0] = info->nz_used; 13959371c9d4SSatish Balay isend[1] = info->nz_allocated; 13969371c9d4SSatish Balay isend[2] = info->nz_unneeded; 13979371c9d4SSatish Balay isend[3] = info->memory; 13989371c9d4SSatish Balay isend[4] = info->mallocs; 139926fbe8dcSKarl Rupp 14009566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 140126fbe8dcSKarl Rupp 14029371c9d4SSatish Balay isend[0] += info->nz_used; 14039371c9d4SSatish Balay isend[1] += info->nz_allocated; 14049371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14059371c9d4SSatish Balay isend[3] += info->memory; 14069371c9d4SSatish Balay isend[4] += info->mallocs; 1407a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1408a30f8f8cSSatish Balay info->nz_used = isend[0]; 1409a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1410a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1411a30f8f8cSSatish Balay info->memory = isend[3]; 1412a30f8f8cSSatish Balay info->mallocs = isend[4]; 1413a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14141c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 141526fbe8dcSKarl Rupp 1416a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1417a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1418a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1419a30f8f8cSSatish Balay info->memory = irecv[3]; 1420a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1421a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14221c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 142326fbe8dcSKarl Rupp 1424a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1425a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1426a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1427a30f8f8cSSatish Balay info->memory = irecv[3]; 1428a30f8f8cSSatish Balay info->mallocs = irecv[4]; 142998921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1430a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1431a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1432a30f8f8cSSatish Balay info->factor_mallocs = 0; 1433a30f8f8cSSatish Balay PetscFunctionReturn(0); 1434a30f8f8cSSatish Balay } 1435a30f8f8cSSatish Balay 14369371c9d4SSatish Balay PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) { 1437a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1438d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1439a30f8f8cSSatish Balay 1440a30f8f8cSSatish Balay PetscFunctionBegin; 1441e98b92d7SKris Buschelman switch (op) { 1442512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1443e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 144428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1445a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1446c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1447e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 144843674050SBarry Smith MatCheckPreallocated(A, 1); 14499566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14509566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1451e98b92d7SKris Buschelman break; 1452e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 145343674050SBarry Smith MatCheckPreallocated(A, 1); 14544e0d8c25SBarry Smith a->roworiented = flg; 145526fbe8dcSKarl Rupp 14569566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14579566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1458e98b92d7SKris Buschelman break; 14598c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 14609371c9d4SSatish Balay case MAT_SORTED_FULL: PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); break; 14619371c9d4SSatish Balay case MAT_IGNORE_OFF_PROC_ENTRIES: a->donotstash = flg; break; 14629371c9d4SSatish Balay case MAT_USE_HASH_TABLE: a->ht_flag = flg; break; 14639371c9d4SSatish Balay case MAT_HERMITIAN: MatCheckPreallocated(A, 1); PetscCall(MatSetOption(a->A, op, flg)); 14640f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1465eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1466547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1467eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1468eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1469eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1470b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1471eb1ec7c1SStefano Zampini } 14720f2140c7SStefano Zampini #endif 1473eeffb40dSHong Zhang break; 1474ffa07934SHong Zhang case MAT_SPD: 14759371c9d4SSatish Balay case MAT_SYMMETRIC: MatCheckPreallocated(A, 1); PetscCall(MatSetOption(a->A, op, flg)); 1476eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1477eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1478eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1479eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1480eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1481eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1482eb1ec7c1SStefano Zampini } 1483eb1ec7c1SStefano Zampini #endif 1484eeffb40dSHong Zhang break; 148577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 148643674050SBarry Smith MatCheckPreallocated(A, 1); 14879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1488eeffb40dSHong Zhang break; 14899a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1490b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 14915f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric"); 14929566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 149377e54ba9SKris Buschelman break; 14949371c9d4SSatish Balay case MAT_SPD_ETERNAL: break; 14959371c9d4SSatish Balay case MAT_IGNORE_LOWER_TRIANGULAR: aA->ignore_ltriangular = flg; break; 14969371c9d4SSatish Balay case MAT_ERROR_LOWER_TRIANGULAR: aA->ignore_ltriangular = flg; break; 14979371c9d4SSatish Balay case MAT_GETROW_UPPERTRIANGULAR: aA->getrow_utriangular = flg; break; 14989371c9d4SSatish Balay default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 1499a30f8f8cSSatish Balay } 1500a30f8f8cSSatish Balay PetscFunctionReturn(0); 1501a30f8f8cSSatish Balay } 1502a30f8f8cSSatish Balay 15039371c9d4SSatish Balay PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) { 1504a30f8f8cSSatish Balay PetscFunctionBegin; 15057fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1506cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15079566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1508cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15099566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1510fc4dec0aSBarry Smith } 15118115998fSBarry Smith PetscFunctionReturn(0); 1512a30f8f8cSSatish Balay } 1513a30f8f8cSSatish Balay 15149371c9d4SSatish Balay PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) { 1515a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1516a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 15175e90f9d9SHong Zhang PetscInt nv, m, n; 1518ace3abfcSBarry Smith PetscBool flg; 1519a30f8f8cSSatish Balay 1520a30f8f8cSSatish Balay PetscFunctionBegin; 1521a30f8f8cSSatish Balay if (ll != rr) { 15229566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 15235f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1524a30f8f8cSSatish Balay } 1525b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1526b3bf805bSHong Zhang 15279566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 15285f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1529b3bf805bSHong Zhang 15309566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 15315f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 15325e90f9d9SHong Zhang 15339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 15345e90f9d9SHong Zhang 15355e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1536dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15375e90f9d9SHong Zhang 15385e90f9d9SHong Zhang /* scale the diagonal part */ 1539dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1540a30f8f8cSSatish Balay 15415e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 15429566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1543dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 1544a30f8f8cSSatish Balay PetscFunctionReturn(0); 1545a30f8f8cSSatish Balay } 1546a30f8f8cSSatish Balay 15479371c9d4SSatish Balay PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) { 1548f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1549a30f8f8cSSatish Balay 1550a30f8f8cSSatish Balay PetscFunctionBegin; 15519566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 1552a30f8f8cSSatish Balay PetscFunctionReturn(0); 1553a30f8f8cSSatish Balay } 1554a30f8f8cSSatish Balay 15556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1556a30f8f8cSSatish Balay 15579371c9d4SSatish Balay PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) { 1558a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1559a30f8f8cSSatish Balay Mat a, b, c, d; 1560ace3abfcSBarry Smith PetscBool flg; 1561a30f8f8cSSatish Balay 1562a30f8f8cSSatish Balay PetscFunctionBegin; 15639371c9d4SSatish Balay a = matA->A; 15649371c9d4SSatish Balay b = matA->B; 15659371c9d4SSatish Balay c = matB->A; 15669371c9d4SSatish Balay d = matB->B; 1567a30f8f8cSSatish Balay 15689566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 156948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 15701c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1571a30f8f8cSSatish Balay PetscFunctionReturn(0); 1572a30f8f8cSSatish Balay } 1573a30f8f8cSSatish Balay 15749371c9d4SSatish Balay PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) { 15754c7a3774SStefano Zampini PetscBool isbaij; 15763c896bc6SHong Zhang 15773c896bc6SHong Zhang PetscFunctionBegin; 15789566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 15795f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 15803c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 15813c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 15829566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 15839566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 15849566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 15853c896bc6SHong Zhang } else { 15864c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 15874c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 15884c7a3774SStefano Zampini 15899566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 15909566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 15913c896bc6SHong Zhang } 15929566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 15933c896bc6SHong Zhang PetscFunctionReturn(0); 15943c896bc6SHong Zhang } 15953c896bc6SHong Zhang 15969371c9d4SSatish Balay PetscErrorCode MatSetUp_MPISBAIJ(Mat A) { 1597273d9f13SBarry Smith PetscFunctionBegin; 15989566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, A->rmap->bs, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL)); 1599273d9f13SBarry Smith PetscFunctionReturn(0); 1600273d9f13SBarry Smith } 1601a5e6ed63SBarry Smith 16029371c9d4SSatish Balay PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) { 16034fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16044fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16054fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16064fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16074fe895cdSHong Zhang 16084fe895cdSHong Zhang PetscFunctionBegin; 16094fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16104fe895cdSHong Zhang PetscScalar alpha = a; 16114fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16124fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 16139566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1614792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 16154fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 16164fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 16179566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1618792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 16199566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1620ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 16219566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 16229566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 16239566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 16244fe895cdSHong Zhang } else { 16254de5dceeSHong Zhang Mat B; 16264de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 16275f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 16289566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 16299566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 16309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 16319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 16329566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 16339566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 16349566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 16359566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 16369566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 16379566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 16389566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 16399566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 16409566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 16419566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 16429566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 16439566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 16449566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 16459566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 16464fe895cdSHong Zhang } 16474fe895cdSHong Zhang PetscFunctionReturn(0); 16484fe895cdSHong Zhang } 16494fe895cdSHong Zhang 16509371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) { 16511302d50aSBarry Smith PetscInt i; 1652afebec48SHong Zhang PetscBool flg; 1653a5e6ed63SBarry Smith 16546849ba73SBarry Smith PetscFunctionBegin; 16559566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1656a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 16579566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 165848a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 16594dcd73b1SHong Zhang } 1660a5e6ed63SBarry Smith PetscFunctionReturn(0); 1661a5e6ed63SBarry Smith } 1662a5e6ed63SBarry Smith 16639371c9d4SSatish Balay PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) { 16647d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 16656f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 16667d68702bSBarry Smith 16677d68702bSBarry Smith PetscFunctionBegin; 16686f33a894SBarry Smith if (!Y->preallocated) { 16699566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 16706f33a894SBarry Smith } else if (!aij->nz) { 1671b83222d8SBarry Smith PetscInt nonew = aij->nonew; 16729566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1673b83222d8SBarry Smith aij->nonew = nonew; 16747d68702bSBarry Smith } 16759566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 16767d68702bSBarry Smith PetscFunctionReturn(0); 16777d68702bSBarry Smith } 16787d68702bSBarry Smith 16799371c9d4SSatish Balay PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) { 16803b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16813b49f96aSBarry Smith 16823b49f96aSBarry Smith PetscFunctionBegin; 16835f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 16849566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 16853b49f96aSBarry Smith if (d) { 16863b49f96aSBarry Smith PetscInt rstart; 16879566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 16883b49f96aSBarry Smith *d += rstart / A->rmap->bs; 16893b49f96aSBarry Smith } 16903b49f96aSBarry Smith PetscFunctionReturn(0); 16913b49f96aSBarry Smith } 16923b49f96aSBarry Smith 16939371c9d4SSatish Balay PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) { 1694a5b7ff6bSBarry Smith PetscFunctionBegin; 1695a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 1696a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1697a5b7ff6bSBarry Smith } 16983b49f96aSBarry Smith 1699a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17003964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1701a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1702a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1703a9d4b620SHong Zhang MatMult_MPISBAIJ, 170497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1705431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1706431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1707f4259b30SLisandro Dalcin NULL, 1708f4259b30SLisandro Dalcin NULL, 1709f4259b30SLisandro Dalcin NULL, 1710f4259b30SLisandro Dalcin /* 10*/ NULL, 1711f4259b30SLisandro Dalcin NULL, 1712f4259b30SLisandro Dalcin NULL, 171341f059aeSBarry Smith MatSOR_MPISBAIJ, 1714a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 171597304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1716a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1717a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1718a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1719a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 172097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1721a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1722a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1723a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1724f4259b30SLisandro Dalcin /* 24*/ NULL, 1725f4259b30SLisandro Dalcin NULL, 1726f4259b30SLisandro Dalcin NULL, 1727f4259b30SLisandro Dalcin NULL, 1728f4259b30SLisandro Dalcin NULL, 17294994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1730f4259b30SLisandro Dalcin NULL, 1731f4259b30SLisandro Dalcin NULL, 1732a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1733f4259b30SLisandro Dalcin NULL, 1734d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1735f4259b30SLisandro Dalcin NULL, 1736f4259b30SLisandro Dalcin NULL, 1737f4259b30SLisandro Dalcin NULL, 1738f4259b30SLisandro Dalcin NULL, 1739d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 17407dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1741d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1742a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 17433c896bc6SHong Zhang MatCopy_MPISBAIJ, 1744f4259b30SLisandro Dalcin /* 44*/ NULL, 1745a30f8f8cSSatish Balay MatScale_MPISBAIJ, 17467d68702bSBarry Smith MatShift_MPISBAIJ, 1747f4259b30SLisandro Dalcin NULL, 1748f4259b30SLisandro Dalcin NULL, 1749f4259b30SLisandro Dalcin /* 49*/ NULL, 1750f4259b30SLisandro Dalcin NULL, 1751f4259b30SLisandro Dalcin NULL, 1752f4259b30SLisandro Dalcin NULL, 1753f4259b30SLisandro Dalcin NULL, 1754f4259b30SLisandro Dalcin /* 54*/ NULL, 1755f4259b30SLisandro Dalcin NULL, 1756a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1757f4259b30SLisandro Dalcin NULL, 1758a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 17597dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1760f4259b30SLisandro Dalcin NULL, 1761f4259b30SLisandro Dalcin NULL, 1762f4259b30SLisandro Dalcin NULL, 1763f4259b30SLisandro Dalcin NULL, 1764f4259b30SLisandro Dalcin /* 64*/ NULL, 1765f4259b30SLisandro Dalcin NULL, 1766f4259b30SLisandro Dalcin NULL, 1767f4259b30SLisandro Dalcin NULL, 1768f4259b30SLisandro Dalcin NULL, 1769d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1770f4259b30SLisandro Dalcin NULL, 177128d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1772f4259b30SLisandro Dalcin NULL, 1773f4259b30SLisandro Dalcin NULL, 1774f4259b30SLisandro Dalcin /* 74*/ NULL, 1775f4259b30SLisandro Dalcin NULL, 1776f4259b30SLisandro Dalcin NULL, 1777f4259b30SLisandro Dalcin NULL, 1778f4259b30SLisandro Dalcin NULL, 1779f4259b30SLisandro Dalcin /* 79*/ NULL, 1780f4259b30SLisandro Dalcin NULL, 1781f4259b30SLisandro Dalcin NULL, 1782f4259b30SLisandro Dalcin NULL, 17835bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1784f4259b30SLisandro Dalcin /* 84*/ NULL, 1785f4259b30SLisandro Dalcin NULL, 1786f4259b30SLisandro Dalcin NULL, 1787f4259b30SLisandro Dalcin NULL, 1788f4259b30SLisandro Dalcin NULL, 1789f4259b30SLisandro Dalcin /* 89*/ NULL, 1790f4259b30SLisandro Dalcin NULL, 1791f4259b30SLisandro Dalcin NULL, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin NULL, 1794f4259b30SLisandro Dalcin /* 94*/ NULL, 1795f4259b30SLisandro Dalcin NULL, 1796f4259b30SLisandro Dalcin NULL, 1797f4259b30SLisandro Dalcin NULL, 1798f4259b30SLisandro Dalcin NULL, 1799f4259b30SLisandro Dalcin /* 99*/ NULL, 1800f4259b30SLisandro Dalcin NULL, 1801f4259b30SLisandro Dalcin NULL, 18022726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1803f4259b30SLisandro Dalcin NULL, 1804f4259b30SLisandro Dalcin /*104*/ NULL, 180599cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1806d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1807d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 180895936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1809f4259b30SLisandro Dalcin /*109*/ NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin NULL, 18133b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1814f4259b30SLisandro Dalcin /*114*/ NULL, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin /*119*/ NULL, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 1823f4259b30SLisandro Dalcin NULL, 1824f4259b30SLisandro Dalcin /*124*/ NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin /*129*/ NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin NULL, 1834f4259b30SLisandro Dalcin /*134*/ NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 183946533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin NULL, 1844d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1845d70f29a3SPierre Jolivet NULL, 1846d70f29a3SPierre Jolivet NULL, 184799a7f59eSMark Adams NULL, 184899a7f59eSMark Adams NULL, 18497fb60732SBarry Smith NULL, 18509371c9d4SSatish Balay /*150*/ NULL}; 1851a30f8f8cSSatish Balay 18529371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) { 1853476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1854535b19f3SBarry Smith PetscInt i, mbs, Mbs; 18555d2a9ed1SStefano Zampini PetscMPIInt size; 1856a23d5eceSKris Buschelman 1857a23d5eceSKris Buschelman PetscFunctionBegin; 18589566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 18599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 18609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 18619566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 18625f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 18635f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1864899cda47SBarry Smith 1865d0f46423SBarry Smith mbs = B->rmap->n / bs; 1866d0f46423SBarry Smith Mbs = B->rmap->N / bs; 18675f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1868a23d5eceSKris Buschelman 1869d0f46423SBarry Smith B->rmap->bs = bs; 1870a23d5eceSKris Buschelman b->bs2 = bs * bs; 1871a23d5eceSKris Buschelman b->mbs = mbs; 1872a23d5eceSKris Buschelman b->Mbs = Mbs; 1873de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1874de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1875a23d5eceSKris Buschelman 1876ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1877d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1878d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1879a23d5eceSKris Buschelman 1880d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1881d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1882a23d5eceSKris Buschelman 1883cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 18849566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&b->colmap)); 1885cb7b82ddSBarry Smith #else 18869566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1887cb7b82ddSBarry Smith #endif 18889566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 18899566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 18909566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 18919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 18929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 18939566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 18949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 18959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 18969566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 1897cb7b82ddSBarry Smith 1898cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 18999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 19009566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 19019566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 19029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 19039566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 1904cb7b82ddSBarry Smith 1905526dfc15SBarry Smith if (!B->preallocated) { 19069566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 19079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 19089566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 19099566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 1910526dfc15SBarry Smith } 1911a23d5eceSKris Buschelman 19129566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 19139566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 191426fbe8dcSKarl Rupp 1915526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1916cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 1917cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 1918a23d5eceSKris Buschelman PetscFunctionReturn(0); 1919a23d5eceSKris Buschelman } 1920a23d5eceSKris Buschelman 19219371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) { 192202106b30SBarry Smith PetscInt m, rstart, cend; 1923f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 1924f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 1925f4259b30SLisandro Dalcin PetscScalar *values = NULL; 1926bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 19273bd0feecSPierre Jolivet PetscBool nooffprocentries; 1928dfb205c3SBarry Smith 1929dfb205c3SBarry Smith PetscFunctionBegin; 19305f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 19319566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 19329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 19339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19359566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 1936dfb205c3SBarry Smith m = B->rmap->n / bs; 1937dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 1938dfb205c3SBarry Smith cend = B->cmap->rend / bs; 1939dfb205c3SBarry Smith 19405f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 19419566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 1942dfb205c3SBarry Smith for (i = 0; i < m; i++) { 1943dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 19445f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 19450cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 1946dfb205c3SBarry Smith JJ = jj + ii[i]; 19470cd7f59aSBarry Smith bd = 0; 1948dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 19490cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 1950dfb205c3SBarry Smith JJ++; 19510cd7f59aSBarry Smith bd++; 1952dfb205c3SBarry Smith } 1953dfb205c3SBarry Smith d = 0; 1954dfb205c3SBarry Smith for (; j < nz; j++) { 1955dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1956dfb205c3SBarry Smith d++; 1957dfb205c3SBarry Smith } 1958dfb205c3SBarry Smith d_nnz[i] = d; 19590cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 19600cd7f59aSBarry Smith nz = nz - bd; 19610cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 1962dfb205c3SBarry Smith } 19639566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 19649566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 19659566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 1966dfb205c3SBarry Smith 1967dfb205c3SBarry Smith values = (PetscScalar *)V; 196848a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 1969dfb205c3SBarry Smith for (i = 0; i < m; i++) { 1970dfb205c3SBarry Smith PetscInt row = i + rstart; 1971dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 1972dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1973bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 1974dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 19759566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 1976bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 1977bb80cfbbSStefano Zampini PetscInt j; 19780cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 19790cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 19809566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 19810cd7f59aSBarry Smith } 19820cd7f59aSBarry Smith } 1983dfb205c3SBarry Smith } 1984dfb205c3SBarry Smith 19859566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 19863bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 19873bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 19889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 19903bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 19913bd0feecSPierre Jolivet 19929566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 1993dfb205c3SBarry Smith PetscFunctionReturn(0); 1994dfb205c3SBarry Smith } 1995dfb205c3SBarry Smith 19960bad9183SKris Buschelman /*MC 1997fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1998828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1999828413b8SBarry Smith the matrix is stored. 2000828413b8SBarry Smith 2001828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 200211a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 20030bad9183SKris Buschelman 20040bad9183SKris Buschelman Options Database Keys: 200511a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 20060bad9183SKris Buschelman 200711a5261eSBarry Smith Note: 2008476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2009476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2010476417e5SBarry Smith 20110bad9183SKris Buschelman Level: beginner 20120bad9183SKris Buschelman 201311a5261eSBarry Smith .seealso: `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 20140bad9183SKris Buschelman M*/ 20150bad9183SKris Buschelman 20169371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) { 2017b5df2d14SHong Zhang Mat_MPISBAIJ *b; 201894ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2019b5df2d14SHong Zhang 2020b5df2d14SHong Zhang PetscFunctionBegin; 2021*4dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2022b0a32e0cSBarry Smith B->data = (void *)b; 20239566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps))); 2024b5df2d14SHong Zhang 2025b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2026b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2027b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2028b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 202926fbe8dcSKarl Rupp 20309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 20319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2032b5df2d14SHong Zhang 2033b5df2d14SHong Zhang /* build local table of row and column ownerships */ 20349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2035b5df2d14SHong Zhang 2036b5df2d14SHong Zhang /* build cache for off array entries formed */ 20379566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 203826fbe8dcSKarl Rupp 2039b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 20400298fd71SBarry Smith b->colmap = NULL; 20410298fd71SBarry Smith b->garray = NULL; 2042b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2043b5df2d14SHong Zhang 2044b5df2d14SHong Zhang /* stuff used in block assembly */ 2045f4259b30SLisandro Dalcin b->barray = NULL; 2046b5df2d14SHong Zhang 2047b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2048f4259b30SLisandro Dalcin b->lvec = NULL; 2049f4259b30SLisandro Dalcin b->Mvctx = NULL; 2050f4259b30SLisandro Dalcin b->slvec0 = NULL; 2051f4259b30SLisandro Dalcin b->slvec0b = NULL; 2052f4259b30SLisandro Dalcin b->slvec1 = NULL; 2053f4259b30SLisandro Dalcin b->slvec1a = NULL; 2054f4259b30SLisandro Dalcin b->slvec1b = NULL; 2055f4259b30SLisandro Dalcin b->sMvctx = NULL; 2056b5df2d14SHong Zhang 2057b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2058f4259b30SLisandro Dalcin b->rowindices = NULL; 2059f4259b30SLisandro Dalcin b->rowvalues = NULL; 2060b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2061b5df2d14SHong Zhang 2062b5df2d14SHong Zhang /* hash table stuff */ 2063f4259b30SLisandro Dalcin b->ht = NULL; 2064f4259b30SLisandro Dalcin b->hd = NULL; 2065b5df2d14SHong Zhang b->ht_size = 0; 2066b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2067b5df2d14SHong Zhang b->ht_fact = 0; 2068b5df2d14SHong Zhang b->ht_total_ct = 0; 2069b5df2d14SHong Zhang b->ht_insert_ct = 0; 2070b5df2d14SHong Zhang 20717dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 20727a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 20737a868f3eSHong Zhang 2074f4259b30SLisandro Dalcin b->in_loc = NULL; 2075f4259b30SLisandro Dalcin b->v_loc = NULL; 207659ffdab8SBarry Smith b->n_loc = 0; 207794ae4db5SBarry Smith 20789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 20799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 20809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 20819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 20826214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 20839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 20846214f412SHong Zhang #endif 2085d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 20869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2087d24d4204SJose E. Roman #endif 20889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 20899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2090aa5a9175SDahai Guo 2091b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2092b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2093b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2094b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2095eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2096b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2097eb1ec7c1SStefano Zampini #else 2098b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2099eb1ec7c1SStefano Zampini #endif 210013647f61SHong Zhang 21019566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2102d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 21039566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 210494ae4db5SBarry Smith if (flg) { 210594ae4db5SBarry Smith PetscReal fact = 1.39; 21069566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 21079566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 210894ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 21099566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 21109566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 211194ae4db5SBarry Smith } 2112d0609cedSBarry Smith PetscOptionsEnd(); 2113b5df2d14SHong Zhang PetscFunctionReturn(0); 2114b5df2d14SHong Zhang } 2115b5df2d14SHong Zhang 2116209238afSKris Buschelman /*MC 2117002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2118209238afSKris Buschelman 211911a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 212011a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2121209238afSKris Buschelman 212211a5261eSBarry Smith Options Database Key: 2123209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2124209238afSKris Buschelman 2125209238afSKris Buschelman Level: beginner 2126209238afSKris Buschelman 212711a5261eSBarry Smith .seealso: `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2128209238afSKris Buschelman M*/ 2129209238afSKris Buschelman 2130b5df2d14SHong Zhang /*@C 2131b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2132b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2133b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2134b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2135b5df2d14SHong Zhang 213611a5261eSBarry Smith Collective on B 2137b5df2d14SHong Zhang 2138b5df2d14SHong Zhang Input Parameters: 21391c4f3114SJed Brown + B - the matrix 2140bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2141bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2142b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2143b5df2d14SHong Zhang submatrix (same for all local rows) 2144b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 21456d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 21460298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 214795742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2148b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2149b5df2d14SHong Zhang submatrix (same for all local rows). 2150b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2151c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 21520298fd71SBarry Smith (possibly different for each block row) or NULL. 2153b5df2d14SHong Zhang 2154b5df2d14SHong Zhang Options Database Keys: 2155a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2156b5df2d14SHong Zhang block calculations (much slower) 2157a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2158b5df2d14SHong Zhang 2159b5df2d14SHong Zhang Notes: 2160b5df2d14SHong Zhang 216111a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2162b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2163b5df2d14SHong Zhang 216449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 216549a6f317SBarry Smith 2166b5df2d14SHong Zhang Storage Information: 2167b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2168b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2169b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2170b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2171b5df2d14SHong Zhang 2172b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2173b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 217411a5261eSBarry Smith d_nz = `PETSC_DEFAULT` and d_nnz = NULL for PETSc to control dynamic 2175b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2176b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2177b5df2d14SHong Zhang 217811a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2179aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2180aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2181aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2182aa95bbe8SBarry Smith 2183b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2184b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2185b5df2d14SHong Zhang 2186b5df2d14SHong Zhang .vb 2187b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2188a4b1a0f6SJed Brown -------------------------- 2189c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2190c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2191c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2192a4b1a0f6SJed Brown -------------------------- 2193b5df2d14SHong Zhang .ve 2194b5df2d14SHong Zhang 2195b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2196b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 21976d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 219811a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2199b5df2d14SHong Zhang 22006d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22016d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2202c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2203c2fc9fa9SBarry Smith 2204b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2205b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2206b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2207b5df2d14SHong Zhang matrices. 2208b5df2d14SHong Zhang 2209b5df2d14SHong Zhang Level: intermediate 2210b5df2d14SHong Zhang 221111a5261eSBarry Smith .seealso: `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2212b5df2d14SHong Zhang @*/ 22139371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) { 2214b5df2d14SHong Zhang PetscFunctionBegin; 22156ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 22166ba663aaSJed Brown PetscValidType(B, 1); 22176ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2218cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 2219b5df2d14SHong Zhang PetscFunctionReturn(0); 2220b5df2d14SHong Zhang } 2221b5df2d14SHong Zhang 2222a30f8f8cSSatish Balay /*@C 222311a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2224a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2225a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2226a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2227a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2228a30f8f8cSSatish Balay 2229d083f849SBarry Smith Collective 2230a30f8f8cSSatish Balay 2231a30f8f8cSSatish Balay Input Parameters: 2232a30f8f8cSSatish Balay + comm - MPI communicator 223311a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 2234bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 223511a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 2236a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2237a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 223811a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 2239a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2240a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 224111a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 224211a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 2243a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2244a30f8f8cSSatish Balay submatrix (same for all local rows) 2245a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 22466d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 22470298fd71SBarry Smith (possibly different for each block block row) or NULL. 224895742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 224995742e49SBarry Smith set its value even if it is zero. 2250a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2251a30f8f8cSSatish Balay submatrix (same for all local rows). 2252a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2253a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 22540298fd71SBarry Smith each block row) or NULL. 2255a30f8f8cSSatish Balay 2256a30f8f8cSSatish Balay Output Parameter: 2257a30f8f8cSSatish Balay . A - the matrix 2258a30f8f8cSSatish Balay 2259a30f8f8cSSatish Balay Options Database Keys: 2260a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2261a30f8f8cSSatish Balay block calculations (much slower) 2262a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2263a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2264a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2265a30f8f8cSSatish Balay 226611a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2267f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 226811a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2269175b88e8SBarry Smith 2270a30f8f8cSSatish Balay Notes: 2271d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 22726d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2273d1be2dadSMatthew Knepley 2274a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2275a30f8f8cSSatish Balay (possibly both). 2276a30f8f8cSSatish Balay 227711a5261eSBarry Smith If` PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2278a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2279a30f8f8cSSatish Balay 228049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 228149a6f317SBarry Smith 2282a30f8f8cSSatish Balay Storage Information: 2283a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2284a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2285a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2286a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2287a30f8f8cSSatish Balay 2288a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2289a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 22900298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2291a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2292a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2293a30f8f8cSSatish Balay 2294a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2295a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2296a30f8f8cSSatish Balay 2297a30f8f8cSSatish Balay .vb 2298a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2299a4b1a0f6SJed Brown -------------------------- 2300c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2301c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2302c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2303a4b1a0f6SJed Brown -------------------------- 2304a30f8f8cSSatish Balay .ve 2305a30f8f8cSSatish Balay 2306a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2307a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23086d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 230911a5261eSBarry Smith MatSeqSBAIJ format and the o submatrix in `MATSEQBAIJ` format. 2310a30f8f8cSSatish Balay 23116d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23126d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2313a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2314a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2315a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2316a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2317a30f8f8cSSatish Balay matrices. 2318a30f8f8cSSatish Balay 2319a30f8f8cSSatish Balay Level: intermediate 2320a30f8f8cSSatish Balay 232111a5261eSBarry Smith .seealso: `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()` 2322a30f8f8cSSatish Balay @*/ 2323a30f8f8cSSatish Balay 23249371c9d4SSatish Balay PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) { 23251302d50aSBarry Smith PetscMPIInt size; 2326a30f8f8cSSatish Balay 2327a30f8f8cSSatish Balay PetscFunctionBegin; 23289566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 23299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 23309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2331273d9f13SBarry Smith if (size > 1) { 23329566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 23339566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2334273d9f13SBarry Smith } else { 23359566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 23369566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2337273d9f13SBarry Smith } 2338a30f8f8cSSatish Balay PetscFunctionReturn(0); 2339a30f8f8cSSatish Balay } 2340a30f8f8cSSatish Balay 23419371c9d4SSatish Balay static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) { 2342a30f8f8cSSatish Balay Mat mat; 2343a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2344d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2345387bc808SHong Zhang PetscScalar *array; 2346a30f8f8cSSatish Balay 2347a30f8f8cSSatish Balay PetscFunctionBegin; 2348f4259b30SLisandro Dalcin *newmat = NULL; 234926fbe8dcSKarl Rupp 23509566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 23519566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 23529566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 23539566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 23549566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2355e1b6402fSHong Zhang 2356d5f3da31SBarry Smith mat->factortype = matin->factortype; 2357273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 235882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 23597fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 23607fff6886SHong Zhang 2361b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2362a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2363a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2364a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2365a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2366a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2367a30f8f8cSSatish Balay 2368a30f8f8cSSatish Balay a->size = oldmat->size; 2369a30f8f8cSSatish Balay a->rank = oldmat->rank; 2370a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2371a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2372f4259b30SLisandro Dalcin a->rowindices = NULL; 2373f4259b30SLisandro Dalcin a->rowvalues = NULL; 2374a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2375f4259b30SLisandro Dalcin a->barray = NULL; 2376899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2377899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2378899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2379899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2380a30f8f8cSSatish Balay 2381a30f8f8cSSatish Balay /* hash table stuff */ 2382f4259b30SLisandro Dalcin a->ht = NULL; 2383f4259b30SLisandro Dalcin a->hd = NULL; 2384a30f8f8cSSatish Balay a->ht_size = 0; 2385a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2386a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2387a30f8f8cSSatish Balay a->ht_total_ct = 0; 2388a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2389a30f8f8cSSatish Balay 23909566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2391a30f8f8cSSatish Balay if (oldmat->colmap) { 2392a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 23939566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap, &a->colmap)); 2394a30f8f8cSSatish Balay #else 23959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 23969566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2397a30f8f8cSSatish Balay #endif 2398f4259b30SLisandro Dalcin } else a->colmap = NULL; 2399387bc808SHong Zhang 2400a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 24019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 24029566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2403f4259b30SLisandro Dalcin } else a->garray = NULL; 2404a30f8f8cSSatish Balay 24059566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 24069566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 24079566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 240882327fa8SHong Zhang 24099566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 24109566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2411387bc808SHong Zhang 24129566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 24139566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 24149566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 24159566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 24169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 24179566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 24189566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 24199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2420387bc808SHong Zhang 2421387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 24229566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2423387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 242482327fa8SHong Zhang 24259566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 24269566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 24279566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2428a30f8f8cSSatish Balay *newmat = mat; 2429a30f8f8cSSatish Balay PetscFunctionReturn(0); 2430a30f8f8cSSatish Balay } 2431a30f8f8cSSatish Balay 2432618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2433618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2434618cc2edSLisandro Dalcin 24359371c9d4SSatish Balay PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) { 24367f489da9SVaclav Hapla PetscBool isbinary; 243795936485SShri Abhyankar 243895936485SShri Abhyankar PetscFunctionBegin; 24399566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 24405f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 24419566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 244295936485SShri Abhyankar PetscFunctionReturn(0); 244395936485SShri Abhyankar } 244495936485SShri Abhyankar 24459371c9d4SSatish Balay PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) { 244624d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2447f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(a->B)->data; 2448ca54ac64SHong Zhang PetscReal atmp; 244987828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 24501302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 24511302d50aSBarry Smith PetscMPIInt rank, size; 24521302d50aSBarry Smith PetscInt *rowners_bs, dest, count, source; 245387828ca2SBarry Smith PetscScalar *va; 24548a1c53f2SBarry Smith MatScalar *ba; 2455f4c0e9e4SHong Zhang MPI_Status stat; 245624d5174aSHong Zhang 245724d5174aSHong Zhang PetscFunctionBegin; 24585f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 24599566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 24609566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2461f4c0e9e4SHong Zhang 24629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 24639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2464f4c0e9e4SHong Zhang 2465d0f46423SBarry Smith bs = A->rmap->bs; 2466f4c0e9e4SHong Zhang mbs = a->mbs; 2467f4c0e9e4SHong Zhang Mbs = a->Mbs; 2468f4c0e9e4SHong Zhang ba = b->a; 2469f4c0e9e4SHong Zhang bi = b->i; 2470f4c0e9e4SHong Zhang bj = b->j; 2471f4c0e9e4SHong Zhang 2472f4c0e9e4SHong Zhang /* find ownerships */ 2473d0f46423SBarry Smith rowners_bs = A->rmap->range; 2474f4c0e9e4SHong Zhang 2475f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 24769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2477f4c0e9e4SHong Zhang 2478f4c0e9e4SHong Zhang /* row_max for B */ 2479b8475685SHong Zhang if (rank != size - 1) { 2480f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 24819371c9d4SSatish Balay ncols = bi[1] - bi[0]; 24829371c9d4SSatish Balay bi++; 2483f4c0e9e4SHong Zhang brow = bs * i; 2484f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2485f4c0e9e4SHong Zhang bcol = bs * (*bj); 2486f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2487ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 248804d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2489f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 24909371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 24919371c9d4SSatish Balay ba++; 2492ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2493ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2494f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2495f4c0e9e4SHong Zhang } 2496f4c0e9e4SHong Zhang } 2497f4c0e9e4SHong Zhang bj++; 2498f4c0e9e4SHong Zhang } 2499f4c0e9e4SHong Zhang } 2500f4c0e9e4SHong Zhang 2501f4c0e9e4SHong Zhang /* send values to its owners */ 2502f4c0e9e4SHong Zhang for (dest = rank + 1; dest < size; dest++) { 2503f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2504ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 25059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2506ca54ac64SHong Zhang } 2507f4c0e9e4SHong Zhang } 2508f4c0e9e4SHong Zhang 2509f4c0e9e4SHong Zhang /* receive values */ 2510ca54ac64SHong Zhang if (rank) { 2511f4c0e9e4SHong Zhang rvalues = work; 2512ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2513f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 25149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2515f4c0e9e4SHong Zhang /* process values */ 2516f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2517ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2518f4c0e9e4SHong Zhang } 2519f4c0e9e4SHong Zhang } 2520ca54ac64SHong Zhang } 2521f4c0e9e4SHong Zhang 25229566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 25239566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 252424d5174aSHong Zhang PetscFunctionReturn(0); 252524d5174aSHong Zhang } 25262798e883SHong Zhang 25279371c9d4SSatish Balay PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) { 25282798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2529d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 25303649974fSBarry Smith PetscScalar *x, *ptr, *from; 2531ffe4fb16SHong Zhang Vec bb1; 25323649974fSBarry Smith const PetscScalar *b; 2533ffe4fb16SHong Zhang 2534ffe4fb16SHong Zhang PetscFunctionBegin; 25355f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 25365f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2537ffe4fb16SHong Zhang 2538a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 25399566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2540a2b30743SBarry Smith PetscFunctionReturn(0); 2541a2b30743SBarry Smith } 2542a2b30743SBarry Smith 2543ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2544ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 25459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2546ffe4fb16SHong Zhang its--; 2547ffe4fb16SHong Zhang } 2548ffe4fb16SHong Zhang 25499566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2550ffe4fb16SHong Zhang while (its--) { 2551ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 25529566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2553ffe4fb16SHong Zhang 2554ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25559566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 25569566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 25579566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2559ffe4fb16SHong Zhang 25609566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2561ffe4fb16SHong Zhang 2562ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25639566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 25649566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 25659566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 25669566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2567ffe4fb16SHong Zhang 2568ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25699566063dSJacob Faibussowitsch PetscCall(VecSet(mat->slvec1b, 0.0)); 2570ffe4fb16SHong Zhang 25719566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 25729566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 25739566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 25749566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2575ffe4fb16SHong Zhang 2576ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 25779566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2578ffe4fb16SHong Zhang 2579ffe4fb16SHong Zhang /* local diagonal sweep */ 25809566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2581ffe4fb16SHong Zhang } 25829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2583fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 25849566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2585fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 25869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2587fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2588fa22f6d0SBarry Smith Vec xx1; 2589ace3abfcSBarry Smith PetscBool hasop; 259020f1ed55SBarry Smith const PetscScalar *diag; 2591887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 259220f1ed55SBarry Smith PetscInt i, n; 2593fa22f6d0SBarry Smith 2594fa22f6d0SBarry Smith if (!mat->xx1) { 25959566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 25969566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2597fa22f6d0SBarry Smith } 2598fa22f6d0SBarry Smith xx1 = mat->xx1; 2599fa22f6d0SBarry Smith bb1 = mat->bb1; 2600fa22f6d0SBarry Smith 26019566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2602fa22f6d0SBarry Smith 2603fa22f6d0SBarry Smith if (!mat->diag) { 2604effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26059566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 26069566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2607fa22f6d0SBarry Smith } 26089566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2609fa22f6d0SBarry Smith 2610fa22f6d0SBarry Smith if (hasop) { 26119566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 26129566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 261320f1ed55SBarry Smith } else { 261420f1ed55SBarry Smith /* 261520f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 26169566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 26179566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 261820f1ed55SBarry Smith */ 26199566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 26209566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 26219566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26229566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26239566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2624887ee2caSBarry Smith if (omega == 1.0) { 262526fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 26269566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2627887ee2caSBarry Smith } else { 262826fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 26299566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2630887ee2caSBarry Smith } 26319566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 26329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 26339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26349566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 263520f1ed55SBarry Smith } 2636fa22f6d0SBarry Smith 2637fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 26389566063dSJacob Faibussowitsch PetscCall(VecSet(mat->slvec1b, 0.0)); 26399566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 26409566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 26419566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 26439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 26449566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26459566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26469566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26479566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2648fa22f6d0SBarry Smith 2649fa22f6d0SBarry Smith /* local sweep */ 26509566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 26519566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2652f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 2653ffe4fb16SHong Zhang PetscFunctionReturn(0); 2654ffe4fb16SHong Zhang } 2655ffe4fb16SHong Zhang 2656dfb205c3SBarry Smith /*@ 265711a5261eSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard 2658dfb205c3SBarry Smith CSR format the local rows. 2659dfb205c3SBarry Smith 2660d083f849SBarry Smith Collective 2661dfb205c3SBarry Smith 2662dfb205c3SBarry Smith Input Parameters: 2663dfb205c3SBarry Smith + comm - MPI communicator 2664dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 266511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2666dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 266711a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 2668dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 266911a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 267011a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 2671483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2672dfb205c3SBarry Smith . j - column indices 2673dfb205c3SBarry Smith - a - matrix values 2674dfb205c3SBarry Smith 2675dfb205c3SBarry Smith Output Parameter: 2676dfb205c3SBarry Smith . mat - the matrix 2677dfb205c3SBarry Smith 2678dfb205c3SBarry Smith Level: intermediate 2679dfb205c3SBarry Smith 2680dfb205c3SBarry Smith Notes: 2681dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2682dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2683dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2684dfb205c3SBarry Smith 2685dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2686dfb205c3SBarry Smith 268711a5261eSBarry Smith .seealso: `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2688db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 2689dfb205c3SBarry Smith @*/ 26909371c9d4SSatish Balay PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) { 2691dfb205c3SBarry Smith PetscFunctionBegin; 26925f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 26935f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 26949566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 26959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 26969566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 26979566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 2698dfb205c3SBarry Smith PetscFunctionReturn(0); 2699dfb205c3SBarry Smith } 2700dfb205c3SBarry Smith 2701dfb205c3SBarry Smith /*@C 270211a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2703dfb205c3SBarry Smith 2704d083f849SBarry Smith Collective 2705dfb205c3SBarry Smith 2706dfb205c3SBarry Smith Input Parameters: 27071c4f3114SJed Brown + B - the matrix 2708dfb205c3SBarry Smith . bs - the block size 2709dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2710dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2711dfb205c3SBarry Smith - v - optional values in the matrix 2712dfb205c3SBarry Smith 2713664954b6SBarry Smith Level: advanced 2714664954b6SBarry Smith 2715664954b6SBarry Smith Notes: 27160cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 27170cd7f59aSBarry Smith and usually the numerical values as well 27180cd7f59aSBarry Smith 271950c5228eSBarry Smith Any entries below the diagonal are ignored 2720dfb205c3SBarry Smith 272111a5261eSBarry Smith .seealso: `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ` 2722dfb205c3SBarry Smith @*/ 27239371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) { 2724dfb205c3SBarry Smith PetscFunctionBegin; 2725cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 2726dfb205c3SBarry Smith PetscFunctionReturn(0); 2727dfb205c3SBarry Smith } 2728dfb205c3SBarry Smith 27299371c9d4SSatish Balay PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) { 273010c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 273110c56fdeSHong Zhang PetscInt *indx; 273210c56fdeSHong Zhang PetscScalar *values; 2733dfb205c3SBarry Smith 27344dcd73b1SHong Zhang PetscFunctionBegin; 27359566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 273610c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 273710c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2738de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 273910c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2740de25e9cbSPierre Jolivet PetscMPIInt rank, size; 27414dcd73b1SHong Zhang 27429566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 27439371c9d4SSatish Balay mbs = m / bs; 27449371c9d4SSatish Balay Nbs = N / cbs; 274548a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2746da91a574SPierre Jolivet nbs = n / cbs; 27474dcd73b1SHong Zhang 27489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2749d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2750de25e9cbSPierre Jolivet 27519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 27529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2753de25e9cbSPierre Jolivet if (rank == size - 1) { 2754de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 27555f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2756de25e9cbSPierre Jolivet } 2757de25e9cbSPierre Jolivet 2758d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 27599566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 276010c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 27619566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 27624dcd73b1SHong Zhang nnz = nnz / bs; 27634dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 27649566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 27659566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 27664dcd73b1SHong Zhang } 27679566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 27689566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 27694dcd73b1SHong Zhang 27709566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 27719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 27729566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 27739566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 27749566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 27759566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2776d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 27774dcd73b1SHong Zhang } 27784dcd73b1SHong Zhang 277910c56fdeSHong Zhang /* numeric phase */ 27809566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 27819566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 27824dcd73b1SHong Zhang 27839566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 27844dcd73b1SHong Zhang for (i = 0; i < m; i++) { 27859566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 27864dcd73b1SHong Zhang Ii = i + rstart; 27879566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 27889566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 27894dcd73b1SHong Zhang } 27909566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 27919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 27929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 27934dcd73b1SHong Zhang PetscFunctionReturn(0); 27944dcd73b1SHong Zhang } 2795