xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 4dfa11a44d5adf2389f1d3acbc8f3c1116dc6c3a)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
96214f412SHong Zhang #endif
10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
12d24d4204SJose E. Roman #endif
13b147fbf3SStefano Zampini 
14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
159371c9d4SSatish Balay static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) {
16b147fbf3SStefano Zampini   Mat       preallocator;
17b147fbf3SStefano Zampini   PetscInt  r, rstart, rend;
18b147fbf3SStefano Zampini   PetscInt  bs, i, m, n, M, N;
19b147fbf3SStefano Zampini   PetscBool cong = PETSC_TRUE;
20b147fbf3SStefano Zampini 
21b147fbf3SStefano Zampini   PetscFunctionBegin;
22b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
23b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B, nm, 2);
24b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
25b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
269566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
275f80ce2aSJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
28b147fbf3SStefano Zampini   }
29b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B, fill, 5);
309566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B, &bs));
319566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &M, &N));
329566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B, &m, &n));
339566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
349566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
359566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator, bs));
369566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, m, n, M, N));
379566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
389566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
39b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
40b147fbf3SStefano Zampini     PetscInt           ncols;
41b147fbf3SStefano Zampini     const PetscInt    *row;
42b147fbf3SStefano Zampini     const PetscScalar *vals;
43b147fbf3SStefano Zampini 
44b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
459566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
469566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
4748a46eb9SPierre Jolivet       if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
489566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
49b147fbf3SStefano Zampini     }
50b147fbf3SStefano Zampini   }
519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
539566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
549566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
55b147fbf3SStefano Zampini   PetscFunctionReturn(0);
56b147fbf3SStefano Zampini }
57b147fbf3SStefano Zampini 
589371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) {
59b147fbf3SStefano Zampini   Mat      B;
60b147fbf3SStefano Zampini   PetscInt r;
61b147fbf3SStefano Zampini 
62b147fbf3SStefano Zampini   PetscFunctionBegin;
63b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
6428d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE, isdense;
65b147fbf3SStefano Zampini     PetscInt  bs;
66b147fbf3SStefano Zampini 
679566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
689566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
699566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, newtype));
709566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A, &bs));
719566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B, bs));
729566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
739566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
749566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
7528d58a37SPierre Jolivet     if (!isdense) {
769566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
779566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
789566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
7928d58a37SPierre Jolivet     } else {
809566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
8128d58a37SPierre Jolivet     }
8228d58a37SPierre Jolivet   } else {
8328d58a37SPierre Jolivet     B = *newmat;
849566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
8528d58a37SPierre Jolivet   }
86b147fbf3SStefano Zampini 
879566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
88b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
89b147fbf3SStefano Zampini     PetscInt           ncols;
90b147fbf3SStefano Zampini     const PetscInt    *row;
91b147fbf3SStefano Zampini     const PetscScalar *vals;
92b147fbf3SStefano Zampini 
939566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
949566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
95eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
96b94d7dedSBarry Smith     if (A->hermitian == PETSC_BOOL3_TRUE) {
97eb1ec7c1SStefano Zampini       PetscInt i;
9848a46eb9SPierre Jolivet       for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
99eb1ec7c1SStefano Zampini     } else {
1009566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
101eb1ec7c1SStefano Zampini     }
102eb1ec7c1SStefano Zampini #else
1039566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
104eb1ec7c1SStefano Zampini #endif
1059566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
106b147fbf3SStefano Zampini   }
1079566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
110b147fbf3SStefano Zampini 
111b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1129566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
113b147fbf3SStefano Zampini   } else {
114b147fbf3SStefano Zampini     *newmat = B;
115b147fbf3SStefano Zampini   }
116b147fbf3SStefano Zampini   PetscFunctionReturn(0);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini 
1199371c9d4SSatish Balay PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) {
120f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
121a30f8f8cSSatish Balay 
122a30f8f8cSSatish Balay   PetscFunctionBegin;
1239566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1249566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
125a30f8f8cSSatish Balay   PetscFunctionReturn(0);
126a30f8f8cSSatish Balay }
127a30f8f8cSSatish Balay 
1289371c9d4SSatish Balay PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) {
129f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   PetscFunctionBegin;
1329566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1339566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
134a30f8f8cSSatish Balay   PetscFunctionReturn(0);
135a30f8f8cSSatish Balay }
136a30f8f8cSSatish Balay 
137d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
138a30f8f8cSSatish Balay   { \
139a30f8f8cSSatish Balay     brow = row / bs; \
1409371c9d4SSatish Balay     rp   = aj + ai[brow]; \
1419371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
1429371c9d4SSatish Balay     rmax = aimax[brow]; \
1439371c9d4SSatish Balay     nrow = ailen[brow]; \
144a30f8f8cSSatish Balay     bcol = col / bs; \
1459371c9d4SSatish Balay     ridx = row % bs; \
1469371c9d4SSatish Balay     cidx = col % bs; \
1479371c9d4SSatish Balay     low  = 0; \
1489371c9d4SSatish Balay     high = nrow; \
149a30f8f8cSSatish Balay     while (high - low > 3) { \
150a30f8f8cSSatish Balay       t = (low + high) / 2; \
151a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
152a30f8f8cSSatish Balay       else low = t; \
153a30f8f8cSSatish Balay     } \
154a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
155a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
156a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
157a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
158a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
159a30f8f8cSSatish Balay         else *bap = value; \
160a30f8f8cSSatish Balay         goto a_noinsert; \
161a30f8f8cSSatish Balay       } \
162a30f8f8cSSatish Balay     } \
163a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
1645f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
165fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
166a30f8f8cSSatish Balay     N = nrow++ - 1; \
167a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
1689566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1699566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1709566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
171a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
172a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
173e56f5c9eSBarry Smith     A->nonzerostate++; \
174a30f8f8cSSatish Balay   a_noinsert:; \
175a30f8f8cSSatish Balay     ailen[brow] = nrow; \
176a30f8f8cSSatish Balay   }
177e5e170daSBarry Smith 
178d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
179a30f8f8cSSatish Balay   { \
180a30f8f8cSSatish Balay     brow = row / bs; \
1819371c9d4SSatish Balay     rp   = bj + bi[brow]; \
1829371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
1839371c9d4SSatish Balay     rmax = bimax[brow]; \
1849371c9d4SSatish Balay     nrow = bilen[brow]; \
185a30f8f8cSSatish Balay     bcol = col / bs; \
1869371c9d4SSatish Balay     ridx = row % bs; \
1879371c9d4SSatish Balay     cidx = col % bs; \
1889371c9d4SSatish Balay     low  = 0; \
1899371c9d4SSatish Balay     high = nrow; \
190a30f8f8cSSatish Balay     while (high - low > 3) { \
191a30f8f8cSSatish Balay       t = (low + high) / 2; \
192a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
193a30f8f8cSSatish Balay       else low = t; \
194a30f8f8cSSatish Balay     } \
195a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
196a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
197a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
198a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
199a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
200a30f8f8cSSatish Balay         else *bap = value; \
201a30f8f8cSSatish Balay         goto b_noinsert; \
202a30f8f8cSSatish Balay       } \
203a30f8f8cSSatish Balay     } \
204a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2055f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
206fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
207a30f8f8cSSatish Balay     N = nrow++ - 1; \
208a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2099566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2109566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2119566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
212a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
213a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
214e56f5c9eSBarry Smith     B->nonzerostate++; \
215a30f8f8cSSatish Balay   b_noinsert:; \
216a30f8f8cSSatish Balay     bilen[brow] = nrow; \
217a30f8f8cSSatish Balay   }
218a30f8f8cSSatish Balay 
219a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
220476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
221a30f8f8cSSatish Balay */
2229371c9d4SSatish Balay PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) {
223a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
224a30f8f8cSSatish Balay   MatScalar     value;
225ace3abfcSBarry Smith   PetscBool     roworiented = baij->roworiented;
2261302d50aSBarry Smith   PetscInt      i, j, row, col;
227d0f46423SBarry Smith   PetscInt      rstart_orig = mat->rmap->rstart;
228d0f46423SBarry Smith   PetscInt      rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
229d0f46423SBarry Smith   PetscInt      cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
230a30f8f8cSSatish Balay 
231a30f8f8cSSatish Balay   /* Some Variables required in the macro */
232a30f8f8cSSatish Balay   Mat           A     = baij->A;
233a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a     = (Mat_SeqSBAIJ *)(A)->data;
2341302d50aSBarry Smith   PetscInt     *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
235a30f8f8cSSatish Balay   MatScalar    *aa = a->a;
236a30f8f8cSSatish Balay 
237a30f8f8cSSatish Balay   Mat          B     = baij->B;
238a30f8f8cSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
2391302d50aSBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
240a30f8f8cSSatish Balay   MatScalar   *ba = b->a;
241a30f8f8cSSatish Balay 
2421302d50aSBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
2431302d50aSBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
244a30f8f8cSSatish Balay   MatScalar *ap, *bap;
245a30f8f8cSSatish Balay 
246a30f8f8cSSatish Balay   /* for stash */
2470298fd71SBarry Smith   PetscInt   n_loc, *in_loc = NULL;
2480298fd71SBarry Smith   MatScalar *v_loc = NULL;
249a30f8f8cSSatish Balay 
250a30f8f8cSSatish Balay   PetscFunctionBegin;
251a30f8f8cSSatish Balay   if (!baij->donotstash) {
25259ffdab8SBarry Smith     if (n > baij->n_loc) {
2539566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
2549566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
2559566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->in_loc));
2569566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->v_loc));
25726fbe8dcSKarl Rupp 
25859ffdab8SBarry Smith       baij->n_loc = n;
25959ffdab8SBarry Smith     }
26059ffdab8SBarry Smith     in_loc = baij->in_loc;
26159ffdab8SBarry Smith     v_loc  = baij->v_loc;
262a30f8f8cSSatish Balay   }
263a30f8f8cSSatish Balay 
264a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
265a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2665f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
267a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
268a30f8f8cSSatish Balay       row = im[i] - rstart_orig;                     /* local row index */
269a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
27001b2bd88SHong Zhang         if (im[i] / bs > in[j] / bs) {
27101b2bd88SHong Zhang           if (a->ignore_ltriangular) {
27201b2bd88SHong Zhang             continue; /* ignore lower triangular blocks */
27326fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
27401b2bd88SHong Zhang         }
275a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
276a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;                    /* local col index */
2779371c9d4SSatish Balay           brow = row / bs;
2789371c9d4SSatish Balay           bcol = col / bs;
279a30f8f8cSSatish Balay           if (brow > bcol) continue; /* ignore lower triangular blocks of A */
280db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
281db4deed7SKarl Rupp           else value = v[i + j * m];
282d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
2839566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
284f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
285f7d195e4SLawrence Mitchell           continue;
286f7d195e4SLawrence Mitchell         } else {
287f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
288f7d195e4SLawrence Mitchell           /* off-diag entry (B) */
289a30f8f8cSSatish Balay           if (mat->was_assembled) {
29048a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
291a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2929566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap, in[j] / bs + 1, &col));
29371730473SSatish Balay             col = col - 1;
294a30f8f8cSSatish Balay #else
29571730473SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
296a30f8f8cSSatish Balay #endif
297a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ *)(baij->A->data))->nonew) {
2989566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
299a30f8f8cSSatish Balay               col   = in[j];
300a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
301a30f8f8cSSatish Balay               B     = baij->B;
302a30f8f8cSSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
3039371c9d4SSatish Balay               bimax = b->imax;
3049371c9d4SSatish Balay               bi    = b->i;
3059371c9d4SSatish Balay               bilen = b->ilen;
3069371c9d4SSatish Balay               bj    = b->j;
307a30f8f8cSSatish Balay               ba    = b->a;
30871730473SSatish Balay             } else col += in[j] % bs;
309a30f8f8cSSatish Balay           } else col = in[j];
310db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
311db4deed7SKarl Rupp           else value = v[i + j * m];
312d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3139566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
314a30f8f8cSSatish Balay         }
315a30f8f8cSSatish Balay       }
316a30f8f8cSSatish Balay     } else { /* off processor entry */
3175f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
318a30f8f8cSSatish Balay       if (!baij->donotstash) {
3195080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
320a30f8f8cSSatish Balay         n_loc          = 0;
321a30f8f8cSSatish Balay         for (j = 0; j < n; j++) {
322f65c83cfSHong Zhang           if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
323a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
324a30f8f8cSSatish Balay           if (roworiented) {
325a30f8f8cSSatish Balay             v_loc[n_loc] = v[i * n + j];
326a30f8f8cSSatish Balay           } else {
327a30f8f8cSSatish Balay             v_loc[n_loc] = v[j * m + i];
328a30f8f8cSSatish Balay           }
329a30f8f8cSSatish Balay           n_loc++;
330a30f8f8cSSatish Balay         }
3319566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
332a30f8f8cSSatish Balay       }
333a30f8f8cSSatish Balay     }
334a30f8f8cSSatish Balay   }
335a30f8f8cSSatish Balay   PetscFunctionReturn(0);
336a30f8f8cSSatish Balay }
337a30f8f8cSSatish Balay 
3389371c9d4SSatish Balay static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) {
33936bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
34036bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
34136bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
34236bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
34336bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
34436bd2089SBarry Smith   const PetscScalar *value       = v;
34536bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
34636bd2089SBarry Smith 
34736bd2089SBarry Smith   PetscFunctionBegin;
34836bd2089SBarry Smith   if (col < row) {
34936bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
35036bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
35136bd2089SBarry Smith   }
35236bd2089SBarry Smith   rp    = aj + ai[row];
35336bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
35436bd2089SBarry Smith   rmax  = imax[row];
35536bd2089SBarry Smith   nrow  = ailen[row];
35636bd2089SBarry Smith   value = v;
35736bd2089SBarry Smith   low   = 0;
35836bd2089SBarry Smith   high  = nrow;
35936bd2089SBarry Smith 
36036bd2089SBarry Smith   while (high - low > 7) {
36136bd2089SBarry Smith     t = (low + high) / 2;
36236bd2089SBarry Smith     if (rp[t] > col) high = t;
36336bd2089SBarry Smith     else low = t;
36436bd2089SBarry Smith   }
36536bd2089SBarry Smith   for (i = low; i < high; i++) {
36636bd2089SBarry Smith     if (rp[i] > col) break;
36736bd2089SBarry Smith     if (rp[i] == col) {
36836bd2089SBarry Smith       bap = ap + bs2 * i;
36936bd2089SBarry Smith       if (roworiented) {
37036bd2089SBarry Smith         if (is == ADD_VALUES) {
37136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
372ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
37336bd2089SBarry Smith           }
37436bd2089SBarry Smith         } else {
37536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
376ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
37736bd2089SBarry Smith           }
37836bd2089SBarry Smith         }
37936bd2089SBarry Smith       } else {
38036bd2089SBarry Smith         if (is == ADD_VALUES) {
38136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
382ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ += *value++;
38336bd2089SBarry Smith           }
38436bd2089SBarry Smith         } else {
38536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
386ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ = *value++;
38736bd2089SBarry Smith           }
38836bd2089SBarry Smith         }
38936bd2089SBarry Smith       }
39036bd2089SBarry Smith       goto noinsert2;
39136bd2089SBarry Smith     }
39236bd2089SBarry Smith   }
39336bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
3945f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
39536bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3969371c9d4SSatish Balay   N = nrow++ - 1;
3979371c9d4SSatish Balay   high++;
39836bd2089SBarry Smith   /* shift up all the later entries in this row */
3999566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4009566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
40136bd2089SBarry Smith   rp[i] = col;
40236bd2089SBarry Smith   bap   = ap + bs2 * i;
40336bd2089SBarry Smith   if (roworiented) {
40436bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
405ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
40636bd2089SBarry Smith     }
40736bd2089SBarry Smith   } else {
40836bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
409ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
41036bd2089SBarry Smith     }
41136bd2089SBarry Smith   }
41236bd2089SBarry Smith noinsert2:;
41336bd2089SBarry Smith   ailen[row] = nrow;
41436bd2089SBarry Smith   PetscFunctionReturn(0);
41536bd2089SBarry Smith }
41636bd2089SBarry Smith 
41736bd2089SBarry Smith /*
41836bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
41936bd2089SBarry Smith */
4209371c9d4SSatish Balay static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) {
42136bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
42236bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
42336bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
42436bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
42536bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
42636bd2089SBarry Smith   const PetscScalar *value       = v;
42736bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
42836bd2089SBarry Smith 
42936bd2089SBarry Smith   PetscFunctionBegin;
43036bd2089SBarry Smith   rp    = aj + ai[row];
43136bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
43236bd2089SBarry Smith   rmax  = imax[row];
43336bd2089SBarry Smith   nrow  = ailen[row];
43436bd2089SBarry Smith   low   = 0;
43536bd2089SBarry Smith   high  = nrow;
43636bd2089SBarry Smith   value = v;
43736bd2089SBarry Smith   while (high - low > 7) {
43836bd2089SBarry Smith     t = (low + high) / 2;
43936bd2089SBarry Smith     if (rp[t] > col) high = t;
44036bd2089SBarry Smith     else low = t;
44136bd2089SBarry Smith   }
44236bd2089SBarry Smith   for (i = low; i < high; i++) {
44336bd2089SBarry Smith     if (rp[i] > col) break;
44436bd2089SBarry Smith     if (rp[i] == col) {
44536bd2089SBarry Smith       bap = ap + bs2 * i;
44636bd2089SBarry Smith       if (roworiented) {
44736bd2089SBarry Smith         if (is == ADD_VALUES) {
44836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
449ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
45036bd2089SBarry Smith           }
45136bd2089SBarry Smith         } else {
45236bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
453ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
45436bd2089SBarry Smith           }
45536bd2089SBarry Smith         }
45636bd2089SBarry Smith       } else {
45736bd2089SBarry Smith         if (is == ADD_VALUES) {
45836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
459ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
46036bd2089SBarry Smith             bap += bs;
46136bd2089SBarry Smith           }
46236bd2089SBarry Smith         } else {
46336bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
464ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
46536bd2089SBarry Smith             bap += bs;
46636bd2089SBarry Smith           }
46736bd2089SBarry Smith         }
46836bd2089SBarry Smith       }
46936bd2089SBarry Smith       goto noinsert2;
47036bd2089SBarry Smith     }
47136bd2089SBarry Smith   }
47236bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4735f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
47436bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4759371c9d4SSatish Balay   N = nrow++ - 1;
4769371c9d4SSatish Balay   high++;
47736bd2089SBarry Smith   /* shift up all the later entries in this row */
4789566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4799566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
48036bd2089SBarry Smith   rp[i] = col;
48136bd2089SBarry Smith   bap   = ap + bs2 * i;
48236bd2089SBarry Smith   if (roworiented) {
48336bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
484ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
48536bd2089SBarry Smith     }
48636bd2089SBarry Smith   } else {
48736bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
488ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
48936bd2089SBarry Smith     }
49036bd2089SBarry Smith   }
49136bd2089SBarry Smith noinsert2:;
49236bd2089SBarry Smith   ailen[row] = nrow;
49336bd2089SBarry Smith   PetscFunctionReturn(0);
49436bd2089SBarry Smith }
49536bd2089SBarry Smith 
49636bd2089SBarry Smith /*
49736bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
49836bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
49936bd2089SBarry Smith */
5009371c9d4SSatish Balay PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) {
5010880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ *)mat->data;
502f15d580aSBarry Smith   const MatScalar *value;
503f15d580aSBarry Smith   MatScalar       *barray      = baij->barray;
504ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
505899cda47SBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
506476417e5SBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
507476417e5SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5080880e062SHong Zhang 
509a30f8f8cSSatish Balay   PetscFunctionBegin;
5100880e062SHong Zhang   if (!barray) {
5119566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
5120880e062SHong Zhang     baij->barray = barray;
5130880e062SHong Zhang   }
5140880e062SHong Zhang 
5150880e062SHong Zhang   if (roworiented) {
5160880e062SHong Zhang     stepval = (n - 1) * bs;
5170880e062SHong Zhang   } else {
5180880e062SHong Zhang     stepval = (m - 1) * bs;
5190880e062SHong Zhang   }
5200880e062SHong Zhang   for (i = 0; i < m; i++) {
5210880e062SHong Zhang     if (im[i] < 0) continue;
5226bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5230880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5240880e062SHong Zhang       row = im[i] - rstart;
5250880e062SHong Zhang       for (j = 0; j < n; j++) {
526f3f98c53SJed Brown         if (im[i] > in[j]) {
527f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
528e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
529f3f98c53SJed Brown         }
5300880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5310880e062SHong Zhang         if ((roworiented) && (n == 1)) {
532f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
5330880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
534f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
5350880e062SHong Zhang         } else { /* Here a copy is required */
5360880e062SHong Zhang           if (roworiented) {
5370880e062SHong Zhang             value = v + i * (stepval + bs) * bs + j * bs;
5380880e062SHong Zhang           } else {
5390880e062SHong Zhang             value = v + j * (stepval + bs) * bs + i * bs;
5400880e062SHong Zhang           }
5410880e062SHong Zhang           for (ii = 0; ii < bs; ii++, value += stepval) {
542ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
5430880e062SHong Zhang           }
5440880e062SHong Zhang           barray -= bs2;
5450880e062SHong Zhang         }
5460880e062SHong Zhang 
5470880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5480880e062SHong Zhang           col = in[j] - cstart;
5499566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
550f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
551f7d195e4SLawrence Mitchell           continue;
552f7d195e4SLawrence Mitchell         } else {
553f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
5540880e062SHong Zhang           if (mat->was_assembled) {
55548a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
5560880e062SHong Zhang 
5572515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5580880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5599371c9d4SSatish Balay             {
5609371c9d4SSatish Balay               PetscInt data;
5619566063dSJacob Faibussowitsch               PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &data));
56208401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
5630880e062SHong Zhang             }
5640880e062SHong Zhang #else
56508401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
5660880e062SHong Zhang #endif
5670880e062SHong Zhang #endif
5680880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5699566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &col));
5700880e062SHong Zhang             col = (col - 1) / bs;
5710880e062SHong Zhang #else
5720880e062SHong Zhang             col = (baij->colmap[in[j]] - 1) / bs;
5730880e062SHong Zhang #endif
5740880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
5759566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
5760880e062SHong Zhang               col = in[j];
5770880e062SHong Zhang             }
57826fbe8dcSKarl Rupp           } else col = in[j];
5799566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
5800880e062SHong Zhang         }
5810880e062SHong Zhang       }
5820880e062SHong Zhang     } else {
5835f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
5840880e062SHong Zhang       if (!baij->donotstash) {
5850880e062SHong Zhang         if (roworiented) {
5869566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
5870880e062SHong Zhang         } else {
5889566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
5890880e062SHong Zhang         }
5900880e062SHong Zhang       }
5910880e062SHong Zhang     }
5920880e062SHong Zhang   }
5930880e062SHong Zhang   PetscFunctionReturn(0);
594a30f8f8cSSatish Balay }
595a30f8f8cSSatish Balay 
5969371c9d4SSatish Balay PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) {
597f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
598d0f46423SBarry Smith   PetscInt      bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
599d0f46423SBarry Smith   PetscInt      bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
600a30f8f8cSSatish Balay 
601a30f8f8cSSatish Balay   PetscFunctionBegin;
602a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
60354c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
60454c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
605a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
606a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
607a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
60854c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
60954c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
610a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
611a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
6129566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
613a30f8f8cSSatish Balay         } else {
61448a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
615a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
6169566063dSJacob Faibussowitsch           PetscCall(PetscTableFind(baij->colmap, idxn[j] / bs + 1, &data));
617a30f8f8cSSatish Balay           data--;
618a30f8f8cSSatish Balay #else
619a30f8f8cSSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
620a30f8f8cSSatish Balay #endif
621a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
622a30f8f8cSSatish Balay           else {
623a30f8f8cSSatish Balay             col = data + idxn[j] % bs;
6249566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
625a30f8f8cSSatish Balay           }
626a30f8f8cSSatish Balay         }
627a30f8f8cSSatish Balay       }
628f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
629a30f8f8cSSatish Balay   }
630a30f8f8cSSatish Balay   PetscFunctionReturn(0);
631a30f8f8cSSatish Balay }
632a30f8f8cSSatish Balay 
6339371c9d4SSatish Balay PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) {
634a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
635a30f8f8cSSatish Balay   PetscReal     sum[2], *lnorm2;
636a30f8f8cSSatish Balay 
637a30f8f8cSSatish Balay   PetscFunctionBegin;
638a30f8f8cSSatish Balay   if (baij->size == 1) {
6399566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, norm));
640a30f8f8cSSatish Balay   } else {
641a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
6429566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2, &lnorm2));
6439566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A, type, lnorm2));
6449371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
6459371c9d4SSatish Balay       lnorm2++; /* squar power of norm(A) */
6469566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B, type, lnorm2));
6479371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
6489371c9d4SSatish Balay       lnorm2--; /* squar power of norm(B) */
6491c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
6508f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
6519566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
6520b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6530b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
6540b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ *)baij->B->data;
6550b8dc8d2SHong Zhang       PetscReal    *rsum, *rsum2, vabs;
656899cda47SBarry Smith       PetscInt     *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
657d0f46423SBarry Smith       PetscInt      brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
6580b8dc8d2SHong Zhang       MatScalar    *v;
6590b8dc8d2SHong Zhang 
6609566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2));
6619566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(rsum, mat->cmap->N));
6620b8dc8d2SHong Zhang       /* Amat */
6639371c9d4SSatish Balay       v  = amat->a;
6649371c9d4SSatish Balay       jj = amat->j;
6650b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
6660b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
6670b8dc8d2SHong Zhang         nz   = amat->i[brow + 1] - amat->i[brow];
6680b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
6699371c9d4SSatish Balay           gcol = bs * (rstart + *jj);
6709371c9d4SSatish Balay           jj++;
6710b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
6720b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
6739371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
6749371c9d4SSatish Balay               v++;
6750b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
6760b8dc8d2SHong Zhang               /* non-diagonal block */
6770b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
6780b8dc8d2SHong Zhang             }
6790b8dc8d2SHong Zhang           }
6800b8dc8d2SHong Zhang         }
6819566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
6820b8dc8d2SHong Zhang       }
6830b8dc8d2SHong Zhang       /* Bmat */
6849371c9d4SSatish Balay       v  = bmat->a;
6859371c9d4SSatish Balay       jj = bmat->j;
6860b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
6870b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
6880b8dc8d2SHong Zhang         nz   = bmat->i[brow + 1] - bmat->i[brow];
6890b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
6909371c9d4SSatish Balay           gcol = bs * garray[*jj];
6919371c9d4SSatish Balay           jj++;
6920b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
6930b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
6949371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
6959371c9d4SSatish Balay               v++;
6960b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
6970b8dc8d2SHong Zhang               rsum[grow + row] += vabs;
6980b8dc8d2SHong Zhang             }
6990b8dc8d2SHong Zhang           }
7000b8dc8d2SHong Zhang         }
7019566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7020b8dc8d2SHong Zhang       }
7031c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7040b8dc8d2SHong Zhang       *norm = 0.0;
705d0f46423SBarry Smith       for (col = 0; col < mat->cmap->N; col++) {
7060b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7070b8dc8d2SHong Zhang       }
7089566063dSJacob Faibussowitsch       PetscCall(PetscFree2(rsum, rsum2));
709f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
710a30f8f8cSSatish Balay   }
711a30f8f8cSSatish Balay   PetscFunctionReturn(0);
712a30f8f8cSSatish Balay }
713a30f8f8cSSatish Balay 
7149371c9d4SSatish Balay PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) {
715a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7161302d50aSBarry Smith   PetscInt      nstash, reallocs;
717a30f8f8cSSatish Balay 
718a30f8f8cSSatish Balay   PetscFunctionBegin;
71926fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
720a30f8f8cSSatish Balay 
7219566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7229566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7239566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7249566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7259566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7269566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
727a30f8f8cSSatish Balay   PetscFunctionReturn(0);
728a30f8f8cSSatish Balay }
729a30f8f8cSSatish Balay 
7309371c9d4SSatish Balay PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) {
731a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
732a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ *)baij->A->data;
73313f74950SBarry Smith   PetscInt      i, j, rstart, ncols, flg, bs2 = baij->bs2;
734e44c0bd4SBarry Smith   PetscInt     *row, *col;
735ace3abfcSBarry Smith   PetscBool     other_disassembled;
73613f74950SBarry Smith   PetscMPIInt   n;
737ace3abfcSBarry Smith   PetscBool     r1, r2, r3;
738a30f8f8cSSatish Balay   MatScalar    *val;
739a30f8f8cSSatish Balay 
74091c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
741a30f8f8cSSatish Balay   PetscFunctionBegin;
7424cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
743a30f8f8cSSatish Balay     while (1) {
7449566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
745a30f8f8cSSatish Balay       if (!flg) break;
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay       for (i = 0; i < n;) {
748a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
74926fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
75026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
75126fbe8dcSKarl Rupp         }
752a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
753a30f8f8cSSatish Balay         else ncols = n - i;
754a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7559566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
756a30f8f8cSSatish Balay         i = j;
757a30f8f8cSSatish Balay       }
758a30f8f8cSSatish Balay     }
7599566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
760a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
761a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
762a30f8f8cSSatish Balay        restore the original flags */
763a30f8f8cSSatish Balay     r1 = baij->roworiented;
764a30f8f8cSSatish Balay     r2 = a->roworiented;
76591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
76626fbe8dcSKarl Rupp 
767a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
768a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
76926fbe8dcSKarl Rupp 
77091c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
771a30f8f8cSSatish Balay     while (1) {
7729566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
773a30f8f8cSSatish Balay       if (!flg) break;
774a30f8f8cSSatish Balay 
775a30f8f8cSSatish Balay       for (i = 0; i < n;) {
776a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
77726fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
77826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
77926fbe8dcSKarl Rupp         }
780a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
781a30f8f8cSSatish Balay         else ncols = n - i;
7829566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
783a30f8f8cSSatish Balay         i = j;
784a30f8f8cSSatish Balay       }
785a30f8f8cSSatish Balay     }
7869566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
78726fbe8dcSKarl Rupp 
788a30f8f8cSSatish Balay     baij->roworiented = r1;
789a30f8f8cSSatish Balay     a->roworiented    = r2;
79026fbe8dcSKarl Rupp 
79191c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */
792a30f8f8cSSatish Balay   }
793a30f8f8cSSatish Balay 
7949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
7959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
796a30f8f8cSSatish Balay 
797a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
7986aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
799a30f8f8cSSatish Balay   /*
800a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
801a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
802a30f8f8cSSatish Balay   */
803a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
8045f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80548a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
806a30f8f8cSSatish Balay   }
807a30f8f8cSSatish Balay 
8089371c9d4SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ }
8099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
8109566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
811a30f8f8cSSatish Balay 
8129566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
81326fbe8dcSKarl Rupp 
814f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8154f9cfa9eSBarry Smith 
8164f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8174f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
818e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
8191c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
820e56f5c9eSBarry Smith   }
821a30f8f8cSSatish Balay   PetscFunctionReturn(0);
822a30f8f8cSSatish Balay }
823a30f8f8cSSatish Balay 
824dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8259804daf3SBarry Smith #include <petscdraw.h>
8269371c9d4SSatish Balay static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) {
827a30f8f8cSSatish Balay   Mat_MPISBAIJ     *baij = (Mat_MPISBAIJ *)mat->data;
828d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8297da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
830ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
831b0a32e0cSBarry Smith   PetscViewer       sviewer;
832f3ef73ceSBarry Smith   PetscViewerFormat format;
833a30f8f8cSSatish Balay 
834a30f8f8cSSatish Balay   PetscFunctionBegin;
8359566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
8369566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
83732077d6dSBarry Smith   if (iascii) {
8389566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
839456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
840a30f8f8cSSatish Balay       MatInfo info;
8419566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
8429566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
8439566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
8449371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
8459371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
8469566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
8479566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
8489566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
8499566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
8509566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
8519566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
8529566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
8539566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
854a30f8f8cSSatish Balay       PetscFunctionReturn(0);
855fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
8569566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
857a30f8f8cSSatish Balay       PetscFunctionReturn(0);
858c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
859c1490034SHong Zhang       PetscFunctionReturn(0);
860a30f8f8cSSatish Balay     }
861a30f8f8cSSatish Balay   }
862a30f8f8cSSatish Balay 
863a30f8f8cSSatish Balay   if (isdraw) {
864b0a32e0cSBarry Smith     PetscDraw draw;
865ace3abfcSBarry Smith     PetscBool isnull;
8669566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
8679566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
86845f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
869a30f8f8cSSatish Balay   }
870a30f8f8cSSatish Balay 
8717da1fb6eSBarry Smith   {
872a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
873a30f8f8cSSatish Balay     Mat           A;
87465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
87565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
876d0f46423SBarry Smith     PetscInt      M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
877a30f8f8cSSatish Balay     MatScalar    *a;
8783e219373SBarry Smith     const char   *matname;
879a30f8f8cSSatish Balay 
880f204ca49SKris Buschelman     /* Should this be the same type as mat? */
8819566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
882dd400576SPatrick Sanan     if (rank == 0) {
8839566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
884a30f8f8cSSatish Balay     } else {
8859566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
886a30f8f8cSSatish Balay     }
8879566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISBAIJ));
8889566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
8899566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
890a30f8f8cSSatish Balay 
891a30f8f8cSSatish Balay     /* copy over the A part */
89265d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ *)baij->A->data;
8939371c9d4SSatish Balay     ai   = Aloc->i;
8949371c9d4SSatish Balay     aj   = Aloc->j;
8959371c9d4SSatish Balay     a    = Aloc->a;
8969566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
897a30f8f8cSSatish Balay 
898a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
899e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
90026fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
901a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
902e9f7bc9eSHong Zhang         col = (baij->cstartbs + aj[j]) * bs;
903a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9049566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
90526fbe8dcSKarl Rupp           col++;
90626fbe8dcSKarl Rupp           a += bs;
907a30f8f8cSSatish Balay         }
908a30f8f8cSSatish Balay       }
909a30f8f8cSSatish Balay     }
910a30f8f8cSSatish Balay     /* copy over the B part */
91165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ *)baij->B->data;
9129371c9d4SSatish Balay     ai   = Bloc->i;
9139371c9d4SSatish Balay     aj   = Bloc->j;
9149371c9d4SSatish Balay     a    = Bloc->a;
915a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
916e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
91726fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
918a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
919a30f8f8cSSatish Balay         col = baij->garray[aj[j]] * bs;
920a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9219566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
92226fbe8dcSKarl Rupp           col++;
92326fbe8dcSKarl Rupp           a += bs;
924a30f8f8cSSatish Balay         }
925a30f8f8cSSatish Balay       }
926a30f8f8cSSatish Balay     }
9279566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
9289566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9299566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
930a30f8f8cSSatish Balay     /*
931a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
932b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
933a30f8f8cSSatish Balay     */
9349566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
9359566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
936dd400576SPatrick Sanan     if (rank == 0) {
9379566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)(A->data))->A, matname));
9389566063dSJacob Faibussowitsch       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)(A->data))->A, sviewer));
939a30f8f8cSSatish Balay     }
9409566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
9419566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
9429566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
943a30f8f8cSSatish Balay   }
944a30f8f8cSSatish Balay   PetscFunctionReturn(0);
945a30f8f8cSSatish Balay }
946a30f8f8cSSatish Balay 
947618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
948618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
949d1654148SHong Zhang 
9509371c9d4SSatish Balay PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) {
951ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
952a30f8f8cSSatish Balay 
953a30f8f8cSSatish Balay   PetscFunctionBegin;
9549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
9559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
9569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
9579566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
958d1654148SHong Zhang   if (iascii || isdraw || issocket) {
9599566063dSJacob Faibussowitsch     PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
9601baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
961a30f8f8cSSatish Balay   PetscFunctionReturn(0);
962a30f8f8cSSatish Balay }
963a30f8f8cSSatish Balay 
9649371c9d4SSatish Balay PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) {
965a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
966a30f8f8cSSatish Balay 
967a30f8f8cSSatish Balay   PetscFunctionBegin;
968a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
969c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N);
970a30f8f8cSSatish Balay #endif
9719566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->stash));
9729566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->bstash));
9739566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->A));
9749566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->B));
975a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
9769566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&baij->colmap));
977a30f8f8cSSatish Balay #else
9789566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->colmap));
979a30f8f8cSSatish Balay #endif
9809566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->garray));
9819566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->lvec));
9829566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->Mvctx));
9839566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec0));
9849566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec0b));
9859566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1));
9869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1a));
9879566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1b));
9889566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->sMvctx));
9899566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
9909566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->barray));
9919566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->hd));
9929566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->diag));
9939566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->bb1));
9949566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->xx1));
995ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
9969566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->setvaluescopy));
997a30f8f8cSSatish Balay #endif
9989566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->in_loc));
9999566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->v_loc));
10009566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->rangebs));
10019566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
1002901853e0SKris Buschelman 
10039566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
10049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
10059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
10069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
10079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
10086214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
10099566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
10106214f412SHong Zhang #endif
1011d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
10129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
1013d24d4204SJose E. Roman #endif
10149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
10159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
1016a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1017a30f8f8cSSatish Balay }
1018a30f8f8cSSatish Balay 
10199371c9d4SSatish Balay PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) {
1020547795f9SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1021eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
10226de40e93SBarry Smith   PetscScalar       *from;
10236de40e93SBarry Smith   const PetscScalar *x;
1024547795f9SHong Zhang 
1025547795f9SHong Zhang   PetscFunctionBegin;
1026547795f9SHong Zhang   /* diagonal part */
10279566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
10289566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b, 0.0));
1029547795f9SHong Zhang 
1030547795f9SHong Zhang   /* subdiagonal part */
10315f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10329566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1033547795f9SHong Zhang 
1034547795f9SHong Zhang   /* copy x into the vec slvec0 */
10359566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10369566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1037547795f9SHong Zhang 
10389566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10399566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1041547795f9SHong Zhang 
10429566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10439566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1044547795f9SHong Zhang   /* supperdiagonal part */
10459566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
1046547795f9SHong Zhang   PetscFunctionReturn(0);
1047547795f9SHong Zhang }
1048547795f9SHong Zhang 
10499371c9d4SSatish Balay PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) {
1050a9d4b620SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1051eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1052d9ca1df4SBarry Smith   PetscScalar       *from;
1053d9ca1df4SBarry Smith   const PetscScalar *x;
1054a9d4b620SHong Zhang 
1055a9d4b620SHong Zhang   PetscFunctionBegin;
1056a9d4b620SHong Zhang   /* diagonal part */
10579566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
10589566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b, 0.0));
1059a9d4b620SHong Zhang 
1060a9d4b620SHong Zhang   /* subdiagonal part */
10619566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1062fc165ae2SBarry Smith 
1063a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10649566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10659566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1066a9d4b620SHong Zhang 
10679566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10689566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10699566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1070fc165ae2SBarry Smith 
10719566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10729566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1073a9d4b620SHong Zhang   /* supperdiagonal part */
10749566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
1075a9d4b620SHong Zhang   PetscFunctionReturn(0);
1076a9d4b620SHong Zhang }
1077a9d4b620SHong Zhang 
10789371c9d4SSatish Balay PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) {
1079eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1080eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1081eb1ec7c1SStefano Zampini   PetscScalar       *from, zero       = 0.0;
1082eb1ec7c1SStefano Zampini   const PetscScalar *x;
1083eb1ec7c1SStefano Zampini 
1084eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1085eb1ec7c1SStefano Zampini   /* diagonal part */
10869566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
10879566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b, zero));
1088eb1ec7c1SStefano Zampini 
1089eb1ec7c1SStefano Zampini   /* subdiagonal part */
10905f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10919566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1092eb1ec7c1SStefano Zampini 
1093eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
10949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
10969566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10979566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1098eb1ec7c1SStefano Zampini 
10999566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11009566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11019566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1102eb1ec7c1SStefano Zampini 
1103eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11049566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
1105eb1ec7c1SStefano Zampini   PetscFunctionReturn(0);
1106eb1ec7c1SStefano Zampini }
1107eb1ec7c1SStefano Zampini 
11089371c9d4SSatish Balay PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) {
1109de8b6608SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1110d0f46423SBarry Smith   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1111d9ca1df4SBarry Smith   PetscScalar       *from, zero       = 0.0;
1112d9ca1df4SBarry Smith   const PetscScalar *x;
1113a9d4b620SHong Zhang 
1114a9d4b620SHong Zhang   PetscFunctionBegin;
1115a9d4b620SHong Zhang   /* diagonal part */
11169566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
11179566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b, zero));
1118a9d4b620SHong Zhang 
1119a9d4b620SHong Zhang   /* subdiagonal part */
11209566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1121a9d4b620SHong Zhang 
1122a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11239566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11249566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11259566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1127a9d4b620SHong Zhang 
11289566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11309566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1131a9d4b620SHong Zhang 
1132a9d4b620SHong Zhang   /* supperdiagonal part */
11339566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
1134a9d4b620SHong Zhang   PetscFunctionReturn(0);
1135a9d4b620SHong Zhang }
1136a9d4b620SHong Zhang 
1137a30f8f8cSSatish Balay /*
1138a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1139a30f8f8cSSatish Balay    diagonal block
1140a30f8f8cSSatish Balay */
11419371c9d4SSatish Balay PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) {
1142a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1143a30f8f8cSSatish Balay 
1144a30f8f8cSSatish Balay   PetscFunctionBegin;
114508401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11469566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
1147a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1148a30f8f8cSSatish Balay }
1149a30f8f8cSSatish Balay 
11509371c9d4SSatish Balay PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) {
1151a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1152a30f8f8cSSatish Balay 
1153a30f8f8cSSatish Balay   PetscFunctionBegin;
11549566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11559566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
1156a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1157a30f8f8cSSatish Balay }
1158a30f8f8cSSatish Balay 
11599371c9d4SSatish Balay PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) {
1160d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1161d0d4cfc2SHong Zhang   PetscScalar  *vworkA, *vworkB, **pvA, **pvB, *v_p;
1162d0f46423SBarry Smith   PetscInt      bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1163d0f46423SBarry Smith   PetscInt      nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1164899cda47SBarry Smith   PetscInt     *cmap, *idx_p, cstart = mat->rstartbs;
1165d0d4cfc2SHong Zhang 
1166a30f8f8cSSatish Balay   PetscFunctionBegin;
11675f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1168d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1169d0d4cfc2SHong Zhang 
1170d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1171d0d4cfc2SHong Zhang     /*
1172d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1173d0d4cfc2SHong Zhang     */
1174d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa  = (Mat_SeqSBAIJ *)mat->A->data;
1175d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba  = (Mat_SeqBAIJ *)mat->B->data;
1176d0d4cfc2SHong Zhang     PetscInt      max = 1, mbs = mat->mbs, tmp;
1177d0d4cfc2SHong Zhang     for (i = 0; i < mbs; i++) {
1178d0d4cfc2SHong Zhang       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
117926fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1180d0d4cfc2SHong Zhang     }
11819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1182d0d4cfc2SHong Zhang   }
1183d0d4cfc2SHong Zhang 
11845f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1185d0d4cfc2SHong Zhang   lrow = row - brstart; /* local row index */
1186d0d4cfc2SHong Zhang 
11879371c9d4SSatish Balay   pvA = &vworkA;
11889371c9d4SSatish Balay   pcA = &cworkA;
11899371c9d4SSatish Balay   pvB = &vworkB;
11909371c9d4SSatish Balay   pcB = &cworkB;
11919371c9d4SSatish Balay   if (!v) {
11929371c9d4SSatish Balay     pvA = NULL;
11939371c9d4SSatish Balay     pvB = NULL;
11949371c9d4SSatish Balay   }
11959371c9d4SSatish Balay   if (!idx) {
11969371c9d4SSatish Balay     pcA = NULL;
11979371c9d4SSatish Balay     if (!v) pcB = NULL;
11989371c9d4SSatish Balay   }
11999566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12009566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1201d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1202d0d4cfc2SHong Zhang 
1203d0d4cfc2SHong Zhang   cmap = mat->garray;
1204d0d4cfc2SHong Zhang   if (v || idx) {
1205d0d4cfc2SHong Zhang     if (nztot) {
1206d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1207d0d4cfc2SHong Zhang       PetscInt imark = -1;
1208d0d4cfc2SHong Zhang       if (v) {
1209d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1210d0d4cfc2SHong Zhang         for (i = 0; i < nzB; i++) {
1211d0d4cfc2SHong Zhang           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1212d0d4cfc2SHong Zhang           else break;
1213d0d4cfc2SHong Zhang         }
1214d0d4cfc2SHong Zhang         imark = i;
1215d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1216d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1217d0d4cfc2SHong Zhang       }
1218d0d4cfc2SHong Zhang       if (idx) {
1219d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1220d0d4cfc2SHong Zhang         if (imark > -1) {
1221ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1222d0d4cfc2SHong Zhang         } else {
1223d0d4cfc2SHong Zhang           for (i = 0; i < nzB; i++) {
122426fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1225d0d4cfc2SHong Zhang             else break;
1226d0d4cfc2SHong Zhang           }
1227d0d4cfc2SHong Zhang           imark = i;
1228d0d4cfc2SHong Zhang         }
1229d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1230d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1231d0d4cfc2SHong Zhang       }
1232d0d4cfc2SHong Zhang     } else {
1233f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1234f4259b30SLisandro Dalcin       if (v) *v = NULL;
1235d0d4cfc2SHong Zhang     }
1236d0d4cfc2SHong Zhang   }
1237d0d4cfc2SHong Zhang   *nz = nztot;
12389566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12399566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
1240a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1241a30f8f8cSSatish Balay }
1242a30f8f8cSSatish Balay 
12439371c9d4SSatish Balay PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) {
1244a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1245a30f8f8cSSatish Balay 
1246a30f8f8cSSatish Balay   PetscFunctionBegin;
12475f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1248a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1249a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1250a30f8f8cSSatish Balay }
1251a30f8f8cSSatish Balay 
12529371c9d4SSatish Balay PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) {
1253d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1254d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1255d0d4cfc2SHong Zhang 
1256d0d4cfc2SHong Zhang   PetscFunctionBegin;
1257d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1258d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1259d0d4cfc2SHong Zhang }
12609371c9d4SSatish Balay PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) {
1261d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1262d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1263d0d4cfc2SHong Zhang 
1264d0d4cfc2SHong Zhang   PetscFunctionBegin;
1265d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1266d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1267d0d4cfc2SHong Zhang }
1268d0d4cfc2SHong Zhang 
12699371c9d4SSatish Balay PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) {
12705f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
12715f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
12722726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
12732726fb6dSPierre Jolivet 
12749566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
12759566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
12765f80ce2aSJacob Faibussowitsch   }
12772726fb6dSPierre Jolivet   PetscFunctionReturn(0);
12782726fb6dSPierre Jolivet }
12792726fb6dSPierre Jolivet 
12809371c9d4SSatish Balay PetscErrorCode MatRealPart_MPISBAIJ(Mat A) {
128199cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
128299cafbc1SBarry Smith 
128399cafbc1SBarry Smith   PetscFunctionBegin;
12849566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
12859566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
128699cafbc1SBarry Smith   PetscFunctionReturn(0);
128799cafbc1SBarry Smith }
128899cafbc1SBarry Smith 
12899371c9d4SSatish Balay PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) {
129099cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
129199cafbc1SBarry Smith 
129299cafbc1SBarry Smith   PetscFunctionBegin;
12939566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
12949566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
129599cafbc1SBarry Smith   PetscFunctionReturn(0);
129699cafbc1SBarry Smith }
129799cafbc1SBarry Smith 
12987dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
129936032a97SHong Zhang    Input: isrow       - distributed(parallel),
130036032a97SHong Zhang           iscol_local - locally owned (seq)
130136032a97SHong Zhang */
13029371c9d4SSatish Balay PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) {
13038f46ffcaSHong Zhang   PetscInt        sz1, sz2, *a1, *a2, i, j, k, nmatch;
13048f46ffcaSHong Zhang   const PetscInt *ptr1, *ptr2;
130536032a97SHong Zhang 
130636032a97SHong Zhang   PetscFunctionBegin;
13079566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &sz1));
13089566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local, &sz2));
13091098a8e8SHong Zhang   if (sz1 > sz2) {
13101098a8e8SHong Zhang     *flg = PETSC_FALSE;
13111098a8e8SHong Zhang     PetscFunctionReturn(0);
13121098a8e8SHong Zhang   }
13138f46ffcaSHong Zhang 
13149566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &ptr1));
13159566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local, &ptr2));
13168f46ffcaSHong Zhang 
13179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1, &a1));
13189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2, &a2));
13199566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1, ptr1, sz1));
13209566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2, ptr2, sz2));
13219566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1, a1));
13229566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2, a2));
13238f46ffcaSHong Zhang 
13248f46ffcaSHong Zhang   nmatch = 0;
13258f46ffcaSHong Zhang   k      = 0;
13268f46ffcaSHong Zhang   for (i = 0; i < sz1; i++) {
13278f46ffcaSHong Zhang     for (j = k; j < sz2; j++) {
13288f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13299371c9d4SSatish Balay         k = j;
13309371c9d4SSatish Balay         nmatch++;
13318f46ffcaSHong Zhang         break;
13328f46ffcaSHong Zhang       }
13338f46ffcaSHong Zhang     }
13348f46ffcaSHong Zhang   }
13359566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &ptr1));
13369566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13379566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13389566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13391098a8e8SHong Zhang   if (nmatch < sz1) {
13401098a8e8SHong Zhang     *flg = PETSC_FALSE;
13411098a8e8SHong Zhang   } else {
13421098a8e8SHong Zhang     *flg = PETSC_TRUE;
13431098a8e8SHong Zhang   }
134436032a97SHong Zhang   PetscFunctionReturn(0);
13458f46ffcaSHong Zhang }
134636032a97SHong Zhang 
13479371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) {
134836032a97SHong Zhang   IS        iscol_local;
134936032a97SHong Zhang   PetscInt  csize;
135036032a97SHong Zhang   PetscBool isequal;
135136032a97SHong Zhang 
135236032a97SHong Zhang   PetscFunctionBegin;
13539566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
135436032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13559566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13565f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
135736032a97SHong Zhang   } else {
1358068661f9SToby Isaac     PetscBool issorted;
1359068661f9SToby Isaac 
13609566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
13619566063dSJacob Faibussowitsch     PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
13629566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
13635f80ce2aSJacob Faibussowitsch     PetscCheck(isequal && issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must equal isrow and be sorted");
13648f46ffcaSHong Zhang   }
13658f46ffcaSHong Zhang 
13667dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
13679566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat));
13688f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
13699566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
13709566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
13718f46ffcaSHong Zhang   }
13728f46ffcaSHong Zhang   PetscFunctionReturn(0);
13738f46ffcaSHong Zhang }
13748f46ffcaSHong Zhang 
13759371c9d4SSatish Balay PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) {
1376a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1377a30f8f8cSSatish Balay 
1378a30f8f8cSSatish Balay   PetscFunctionBegin;
13799566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
13809566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
1381a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1382a30f8f8cSSatish Balay }
1383a30f8f8cSSatish Balay 
13849371c9d4SSatish Balay PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) {
1385a30f8f8cSSatish Balay   Mat_MPISBAIJ  *a = (Mat_MPISBAIJ *)matin->data;
1386a30f8f8cSSatish Balay   Mat            A = a->A, B = a->B;
13873966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1388a30f8f8cSSatish Balay 
1389a30f8f8cSSatish Balay   PetscFunctionBegin;
1390d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
139126fbe8dcSKarl Rupp 
13929566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
139326fbe8dcSKarl Rupp 
13949371c9d4SSatish Balay   isend[0] = info->nz_used;
13959371c9d4SSatish Balay   isend[1] = info->nz_allocated;
13969371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
13979371c9d4SSatish Balay   isend[3] = info->memory;
13989371c9d4SSatish Balay   isend[4] = info->mallocs;
139926fbe8dcSKarl Rupp 
14009566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
140126fbe8dcSKarl Rupp 
14029371c9d4SSatish Balay   isend[0] += info->nz_used;
14039371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14049371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14059371c9d4SSatish Balay   isend[3] += info->memory;
14069371c9d4SSatish Balay   isend[4] += info->mallocs;
1407a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1408a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1409a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1410a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1411a30f8f8cSSatish Balay     info->memory       = isend[3];
1412a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1413a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14141c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
141526fbe8dcSKarl Rupp 
1416a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1417a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1418a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1419a30f8f8cSSatish Balay     info->memory       = irecv[3];
1420a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1421a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14221c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
142326fbe8dcSKarl Rupp 
1424a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1425a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1426a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1427a30f8f8cSSatish Balay     info->memory       = irecv[3];
1428a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
142998921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1430a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1431a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1432a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1433a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1434a30f8f8cSSatish Balay }
1435a30f8f8cSSatish Balay 
14369371c9d4SSatish Balay PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) {
1437a30f8f8cSSatish Balay   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1438d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1439a30f8f8cSSatish Balay 
1440a30f8f8cSSatish Balay   PetscFunctionBegin;
1441e98b92d7SKris Buschelman   switch (op) {
1442512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1443e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
144428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1445a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1446c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1447e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
144843674050SBarry Smith     MatCheckPreallocated(A, 1);
14499566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14509566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1451e98b92d7SKris Buschelman     break;
1452e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
145343674050SBarry Smith     MatCheckPreallocated(A, 1);
14544e0d8c25SBarry Smith     a->roworiented = flg;
145526fbe8dcSKarl Rupp 
14569566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14579566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1458e98b92d7SKris Buschelman     break;
14598c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
14609371c9d4SSatish Balay   case MAT_SORTED_FULL: PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); break;
14619371c9d4SSatish Balay   case MAT_IGNORE_OFF_PROC_ENTRIES: a->donotstash = flg; break;
14629371c9d4SSatish Balay   case MAT_USE_HASH_TABLE: a->ht_flag = flg; break;
14639371c9d4SSatish Balay   case MAT_HERMITIAN: MatCheckPreallocated(A, 1); PetscCall(MatSetOption(a->A, op, flg));
14640f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1465eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1466547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1467eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1468eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1469eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1470b94d7dedSBarry Smith       A->symmetric             = PETSC_BOOL3_FALSE;
1471eb1ec7c1SStefano Zampini     }
14720f2140c7SStefano Zampini #endif
1473eeffb40dSHong Zhang     break;
1474ffa07934SHong Zhang   case MAT_SPD:
14759371c9d4SSatish Balay   case MAT_SYMMETRIC: MatCheckPreallocated(A, 1); PetscCall(MatSetOption(a->A, op, flg));
1476eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1477eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1478eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1479eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1480eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1481eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1482eb1ec7c1SStefano Zampini     }
1483eb1ec7c1SStefano Zampini #endif
1484eeffb40dSHong Zhang     break;
148577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
148643674050SBarry Smith     MatCheckPreallocated(A, 1);
14879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
1488eeffb40dSHong Zhang     break;
14899a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1490b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
14915f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric");
14929566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
149377e54ba9SKris Buschelman     break;
14949371c9d4SSatish Balay   case MAT_SPD_ETERNAL: break;
14959371c9d4SSatish Balay   case MAT_IGNORE_LOWER_TRIANGULAR: aA->ignore_ltriangular = flg; break;
14969371c9d4SSatish Balay   case MAT_ERROR_LOWER_TRIANGULAR: aA->ignore_ltriangular = flg; break;
14979371c9d4SSatish Balay   case MAT_GETROW_UPPERTRIANGULAR: aA->getrow_utriangular = flg; break;
14989371c9d4SSatish Balay   default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
1499a30f8f8cSSatish Balay   }
1500a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1501a30f8f8cSSatish Balay }
1502a30f8f8cSSatish Balay 
15039371c9d4SSatish Balay PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) {
1504a30f8f8cSSatish Balay   PetscFunctionBegin;
15057fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1506cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
15079566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1508cf37664fSBarry Smith   } else if (reuse == MAT_REUSE_MATRIX) {
15099566063dSJacob Faibussowitsch     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1510fc4dec0aSBarry Smith   }
15118115998fSBarry Smith   PetscFunctionReturn(0);
1512a30f8f8cSSatish Balay }
1513a30f8f8cSSatish Balay 
15149371c9d4SSatish Balay PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) {
1515a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1516a30f8f8cSSatish Balay   Mat           a = baij->A, b = baij->B;
15175e90f9d9SHong Zhang   PetscInt      nv, m, n;
1518ace3abfcSBarry Smith   PetscBool     flg;
1519a30f8f8cSSatish Balay 
1520a30f8f8cSSatish Balay   PetscFunctionBegin;
1521a30f8f8cSSatish Balay   if (ll != rr) {
15229566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll, rr, &flg));
15235f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same");
1524a30f8f8cSSatish Balay   }
1525b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1526b3bf805bSHong Zhang 
15279566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
15285f80ce2aSJacob Faibussowitsch   PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1529b3bf805bSHong Zhang 
15309566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr, &nv));
15315f80ce2aSJacob Faibussowitsch   PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
15325e90f9d9SHong Zhang 
15339566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
15345e90f9d9SHong Zhang 
15355e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1536dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15375e90f9d9SHong Zhang 
15385e90f9d9SHong Zhang   /* scale the diagonal part */
1539dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
1540a30f8f8cSSatish Balay 
15415e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
15429566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1543dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
1544a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1545a30f8f8cSSatish Balay }
1546a30f8f8cSSatish Balay 
15479371c9d4SSatish Balay PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) {
1548f3566a2aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1549a30f8f8cSSatish Balay 
1550a30f8f8cSSatish Balay   PetscFunctionBegin;
15519566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
1552a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1553a30f8f8cSSatish Balay }
1554a30f8f8cSSatish Balay 
15556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1556a30f8f8cSSatish Balay 
15579371c9d4SSatish Balay PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) {
1558a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1559a30f8f8cSSatish Balay   Mat           a, b, c, d;
1560ace3abfcSBarry Smith   PetscBool     flg;
1561a30f8f8cSSatish Balay 
1562a30f8f8cSSatish Balay   PetscFunctionBegin;
15639371c9d4SSatish Balay   a = matA->A;
15649371c9d4SSatish Balay   b = matA->B;
15659371c9d4SSatish Balay   c = matB->A;
15669371c9d4SSatish Balay   d = matB->B;
1567a30f8f8cSSatish Balay 
15689566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
156948a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
15701c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
1571a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1572a30f8f8cSSatish Balay }
1573a30f8f8cSSatish Balay 
15749371c9d4SSatish Balay PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) {
15754c7a3774SStefano Zampini   PetscBool isbaij;
15763c896bc6SHong Zhang 
15773c896bc6SHong Zhang   PetscFunctionBegin;
15789566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
15795f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
15803c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
15813c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
15829566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
15839566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
15849566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
15853c896bc6SHong Zhang   } else {
15864c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
15874c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
15884c7a3774SStefano Zampini 
15899566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
15909566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
15913c896bc6SHong Zhang   }
15929566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
15933c896bc6SHong Zhang   PetscFunctionReturn(0);
15943c896bc6SHong Zhang }
15953c896bc6SHong Zhang 
15969371c9d4SSatish Balay PetscErrorCode MatSetUp_MPISBAIJ(Mat A) {
1597273d9f13SBarry Smith   PetscFunctionBegin;
15989566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(A, A->rmap->bs, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL));
1599273d9f13SBarry Smith   PetscFunctionReturn(0);
1600273d9f13SBarry Smith }
1601a5e6ed63SBarry Smith 
16029371c9d4SSatish Balay PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) {
16034fe895cdSHong Zhang   Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
16044fe895cdSHong Zhang   PetscBLASInt  bnz, one                          = 1;
16054fe895cdSHong Zhang   Mat_SeqSBAIJ *xa, *ya;
16064fe895cdSHong Zhang   Mat_SeqBAIJ  *xb, *yb;
16074fe895cdSHong Zhang 
16084fe895cdSHong Zhang   PetscFunctionBegin;
16094fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16104fe895cdSHong Zhang     PetscScalar alpha = a;
16114fe895cdSHong Zhang     xa                = (Mat_SeqSBAIJ *)xx->A->data;
16124fe895cdSHong Zhang     ya                = (Mat_SeqSBAIJ *)yy->A->data;
16139566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1614792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
16154fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
16164fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
16179566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1618792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
16199566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1620ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
16219566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
16229566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
16239566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
16244fe895cdSHong Zhang   } else {
16254de5dceeSHong Zhang     Mat       B;
16264de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
16275f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
16289566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
16299566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
16309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
16319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
16329566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
16339566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
16349566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
16359566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
16369566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISBAIJ));
16379566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
16389566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
16399566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
16409566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
16419566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
16429566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
16439566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
16449566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
16459566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
16464fe895cdSHong Zhang   }
16474fe895cdSHong Zhang   PetscFunctionReturn(0);
16484fe895cdSHong Zhang }
16494fe895cdSHong Zhang 
16509371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) {
16511302d50aSBarry Smith   PetscInt  i;
1652afebec48SHong Zhang   PetscBool flg;
1653a5e6ed63SBarry Smith 
16546849ba73SBarry Smith   PetscFunctionBegin;
16559566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1656a5e6ed63SBarry Smith   for (i = 0; i < n; i++) {
16579566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i], icol[i], &flg));
165848a46eb9SPierre Jolivet     if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
16594dcd73b1SHong Zhang   }
1660a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1661a5e6ed63SBarry Smith }
1662a5e6ed63SBarry Smith 
16639371c9d4SSatish Balay PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) {
16647d68702bSBarry Smith   Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
16656f33a894SBarry Smith   Mat_SeqSBAIJ *aij  = (Mat_SeqSBAIJ *)maij->A->data;
16667d68702bSBarry Smith 
16677d68702bSBarry Smith   PetscFunctionBegin;
16686f33a894SBarry Smith   if (!Y->preallocated) {
16699566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
16706f33a894SBarry Smith   } else if (!aij->nz) {
1671b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
16729566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1673b83222d8SBarry Smith     aij->nonew = nonew;
16747d68702bSBarry Smith   }
16759566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
16767d68702bSBarry Smith   PetscFunctionReturn(0);
16777d68702bSBarry Smith }
16787d68702bSBarry Smith 
16799371c9d4SSatish Balay PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) {
16803b49f96aSBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16813b49f96aSBarry Smith 
16823b49f96aSBarry Smith   PetscFunctionBegin;
16835f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
16849566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
16853b49f96aSBarry Smith   if (d) {
16863b49f96aSBarry Smith     PetscInt rstart;
16879566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
16883b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
16893b49f96aSBarry Smith   }
16903b49f96aSBarry Smith   PetscFunctionReturn(0);
16913b49f96aSBarry Smith }
16923b49f96aSBarry Smith 
16939371c9d4SSatish Balay PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) {
1694a5b7ff6bSBarry Smith   PetscFunctionBegin;
1695a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ *)A->data)->A;
1696a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1697a5b7ff6bSBarry Smith }
16983b49f96aSBarry Smith 
1699a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17003964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1701a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1702a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1703a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
170497304618SKris Buschelman                                        /*  4*/ MatMultAdd_MPISBAIJ,
1705431c96f7SBarry Smith                                        MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1706431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1707f4259b30SLisandro Dalcin                                        NULL,
1708f4259b30SLisandro Dalcin                                        NULL,
1709f4259b30SLisandro Dalcin                                        NULL,
1710f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1711f4259b30SLisandro Dalcin                                        NULL,
1712f4259b30SLisandro Dalcin                                        NULL,
171341f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1714a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
171597304618SKris Buschelman                                        /* 15*/ MatGetInfo_MPISBAIJ,
1716a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1717a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1718a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1719a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
172097304618SKris Buschelman                                        /* 20*/ MatAssemblyBegin_MPISBAIJ,
1721a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1722a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1723a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1724f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1725f4259b30SLisandro Dalcin                                        NULL,
1726f4259b30SLisandro Dalcin                                        NULL,
1727f4259b30SLisandro Dalcin                                        NULL,
1728f4259b30SLisandro Dalcin                                        NULL,
17294994cf47SJed Brown                                        /* 29*/ MatSetUp_MPISBAIJ,
1730f4259b30SLisandro Dalcin                                        NULL,
1731f4259b30SLisandro Dalcin                                        NULL,
1732a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1733f4259b30SLisandro Dalcin                                        NULL,
1734d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_MPISBAIJ,
1735f4259b30SLisandro Dalcin                                        NULL,
1736f4259b30SLisandro Dalcin                                        NULL,
1737f4259b30SLisandro Dalcin                                        NULL,
1738f4259b30SLisandro Dalcin                                        NULL,
1739d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_MPISBAIJ,
17407dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1741d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1742a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
17433c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1744f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1745a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
17467d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1747f4259b30SLisandro Dalcin                                        NULL,
1748f4259b30SLisandro Dalcin                                        NULL,
1749f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1750f4259b30SLisandro Dalcin                                        NULL,
1751f4259b30SLisandro Dalcin                                        NULL,
1752f4259b30SLisandro Dalcin                                        NULL,
1753f4259b30SLisandro Dalcin                                        NULL,
1754f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
1755f4259b30SLisandro Dalcin                                        NULL,
1756a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1757f4259b30SLisandro Dalcin                                        NULL,
1758a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
17597dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1760f4259b30SLisandro Dalcin                                        NULL,
1761f4259b30SLisandro Dalcin                                        NULL,
1762f4259b30SLisandro Dalcin                                        NULL,
1763f4259b30SLisandro Dalcin                                        NULL,
1764f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1765f4259b30SLisandro Dalcin                                        NULL,
1766f4259b30SLisandro Dalcin                                        NULL,
1767f4259b30SLisandro Dalcin                                        NULL,
1768f4259b30SLisandro Dalcin                                        NULL,
1769d519adbfSMatthew Knepley                                        /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1770f4259b30SLisandro Dalcin                                        NULL,
177128d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1772f4259b30SLisandro Dalcin                                        NULL,
1773f4259b30SLisandro Dalcin                                        NULL,
1774f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
1775f4259b30SLisandro Dalcin                                        NULL,
1776f4259b30SLisandro Dalcin                                        NULL,
1777f4259b30SLisandro Dalcin                                        NULL,
1778f4259b30SLisandro Dalcin                                        NULL,
1779f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1780f4259b30SLisandro Dalcin                                        NULL,
1781f4259b30SLisandro Dalcin                                        NULL,
1782f4259b30SLisandro Dalcin                                        NULL,
17835bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1784f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1785f4259b30SLisandro Dalcin                                        NULL,
1786f4259b30SLisandro Dalcin                                        NULL,
1787f4259b30SLisandro Dalcin                                        NULL,
1788f4259b30SLisandro Dalcin                                        NULL,
1789f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1790f4259b30SLisandro Dalcin                                        NULL,
1791f4259b30SLisandro Dalcin                                        NULL,
1792f4259b30SLisandro Dalcin                                        NULL,
1793f4259b30SLisandro Dalcin                                        NULL,
1794f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1795f4259b30SLisandro Dalcin                                        NULL,
1796f4259b30SLisandro Dalcin                                        NULL,
1797f4259b30SLisandro Dalcin                                        NULL,
1798f4259b30SLisandro Dalcin                                        NULL,
1799f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1800f4259b30SLisandro Dalcin                                        NULL,
1801f4259b30SLisandro Dalcin                                        NULL,
18022726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1803f4259b30SLisandro Dalcin                                        NULL,
1804f4259b30SLisandro Dalcin                                        /*104*/ NULL,
180599cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1806d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1807d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
180895936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1809f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
1811f4259b30SLisandro Dalcin                                        NULL,
1812f4259b30SLisandro Dalcin                                        NULL,
18133b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1814f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1815f4259b30SLisandro Dalcin                                        NULL,
1816f4259b30SLisandro Dalcin                                        NULL,
1817f4259b30SLisandro Dalcin                                        NULL,
1818f4259b30SLisandro Dalcin                                        NULL,
1819f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1820f4259b30SLisandro Dalcin                                        NULL,
1821f4259b30SLisandro Dalcin                                        NULL,
1822f4259b30SLisandro Dalcin                                        NULL,
1823f4259b30SLisandro Dalcin                                        NULL,
1824f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1825f4259b30SLisandro Dalcin                                        NULL,
1826f4259b30SLisandro Dalcin                                        NULL,
1827f4259b30SLisandro Dalcin                                        NULL,
1828f4259b30SLisandro Dalcin                                        NULL,
1829f4259b30SLisandro Dalcin                                        /*129*/ NULL,
1830f4259b30SLisandro Dalcin                                        NULL,
1831f4259b30SLisandro Dalcin                                        NULL,
1832f4259b30SLisandro Dalcin                                        NULL,
1833f4259b30SLisandro Dalcin                                        NULL,
1834f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836f4259b30SLisandro Dalcin                                        NULL,
1837f4259b30SLisandro Dalcin                                        NULL,
1838f4259b30SLisandro Dalcin                                        NULL,
183946533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
1843f4259b30SLisandro Dalcin                                        NULL,
1844d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1845d70f29a3SPierre Jolivet                                        NULL,
1846d70f29a3SPierre Jolivet                                        NULL,
184799a7f59eSMark Adams                                        NULL,
184899a7f59eSMark Adams                                        NULL,
18497fb60732SBarry Smith                                        NULL,
18509371c9d4SSatish Balay                                        /*150*/ NULL};
1851a30f8f8cSSatish Balay 
18529371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) {
1853476417e5SBarry Smith   Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1854535b19f3SBarry Smith   PetscInt      i, mbs, Mbs;
18555d2a9ed1SStefano Zampini   PetscMPIInt   size;
1856a23d5eceSKris Buschelman 
1857a23d5eceSKris Buschelman   PetscFunctionBegin;
18589566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
18599566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
18609566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
18619566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
18625f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
18635f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1864899cda47SBarry Smith 
1865d0f46423SBarry Smith   mbs = B->rmap->n / bs;
1866d0f46423SBarry Smith   Mbs = B->rmap->N / bs;
18675f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1868a23d5eceSKris Buschelman 
1869d0f46423SBarry Smith   B->rmap->bs = bs;
1870a23d5eceSKris Buschelman   b->bs2      = bs * bs;
1871a23d5eceSKris Buschelman   b->mbs      = mbs;
1872a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1873de64b629SHong Zhang   b->nbs      = B->cmap->n / bs;
1874de64b629SHong Zhang   b->Nbs      = B->cmap->N / bs;
1875a23d5eceSKris Buschelman 
1876ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
1877d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
1878d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
1879a23d5eceSKris Buschelman 
1880d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
1881d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
1882a23d5eceSKris Buschelman 
1883cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
18849566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&b->colmap));
1885cb7b82ddSBarry Smith #else
18869566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
1887cb7b82ddSBarry Smith #endif
18889566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
18899566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
18909566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
18919566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
18929566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
18939566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
18949566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
18959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
18969566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
1897cb7b82ddSBarry Smith 
1898cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
18999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
19009566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
19019566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
19029566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
19039566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
1904cb7b82ddSBarry Smith 
1905526dfc15SBarry Smith   if (!B->preallocated) {
19069566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
19079566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
19089566063dSJacob Faibussowitsch     PetscCall(MatSetType(b->A, MATSEQSBAIJ));
19099566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
1910526dfc15SBarry Smith   }
1911a23d5eceSKris Buschelman 
19129566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
19139566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
191426fbe8dcSKarl Rupp 
1915526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
1916cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
1917cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
1918a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1919a23d5eceSKris Buschelman }
1920a23d5eceSKris Buschelman 
19219371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) {
192202106b30SBarry Smith   PetscInt        m, rstart, cend;
1923f4259b30SLisandro Dalcin   PetscInt        i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
1924f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
1925f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
1926bb80cfbbSStefano Zampini   PetscBool       roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
19273bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
1928dfb205c3SBarry Smith 
1929dfb205c3SBarry Smith   PetscFunctionBegin;
19305f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
19319566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
19329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
19339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
1936dfb205c3SBarry Smith   m      = B->rmap->n / bs;
1937dfb205c3SBarry Smith   rstart = B->rmap->rstart / bs;
1938dfb205c3SBarry Smith   cend   = B->cmap->rend / bs;
1939dfb205c3SBarry Smith 
19405f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
19419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
1942dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
1943dfb205c3SBarry Smith     nz = ii[i + 1] - ii[i];
19445f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
19450cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
1946dfb205c3SBarry Smith     JJ = jj + ii[i];
19470cd7f59aSBarry Smith     bd = 0;
1948dfb205c3SBarry Smith     for (j = 0; j < nz; j++) {
19490cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
1950dfb205c3SBarry Smith       JJ++;
19510cd7f59aSBarry Smith       bd++;
1952dfb205c3SBarry Smith     }
1953dfb205c3SBarry Smith     d = 0;
1954dfb205c3SBarry Smith     for (; j < nz; j++) {
1955dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1956dfb205c3SBarry Smith       d++;
1957dfb205c3SBarry Smith     }
1958dfb205c3SBarry Smith     d_nnz[i] = d;
19590cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
19600cd7f59aSBarry Smith     nz       = nz - bd;
19610cd7f59aSBarry Smith     nz_max   = PetscMax(nz_max, nz);
1962dfb205c3SBarry Smith   }
19639566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
19649566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
19659566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
1966dfb205c3SBarry Smith 
1967dfb205c3SBarry Smith   values = (PetscScalar *)V;
196848a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
1969dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
1970dfb205c3SBarry Smith     PetscInt        row   = i + rstart;
1971dfb205c3SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
1972dfb205c3SBarry Smith     const PetscInt *icols = jj + ii[i];
1973bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
1974dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
19759566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
1976bb80cfbbSStefano Zampini     } else { /* block ordering does not match so we can only insert one block at a time. */
1977bb80cfbbSStefano Zampini       PetscInt j;
19780cd7f59aSBarry Smith       for (j = 0; j < ncols; j++) {
19790cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
19809566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
19810cd7f59aSBarry Smith       }
19820cd7f59aSBarry Smith     }
1983dfb205c3SBarry Smith   }
1984dfb205c3SBarry Smith 
19859566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
19863bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
19873bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
19889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
19903bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
19913bd0feecSPierre Jolivet 
19929566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
1993dfb205c3SBarry Smith   PetscFunctionReturn(0);
1994dfb205c3SBarry Smith }
1995dfb205c3SBarry Smith 
19960bad9183SKris Buschelman /*MC
1997fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1998828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1999828413b8SBarry Smith    the matrix is stored.
2000828413b8SBarry Smith 
2001828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
200211a5261eSBarry Smith    can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`);
20030bad9183SKris Buschelman 
20040bad9183SKris Buschelman    Options Database Keys:
200511a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()`
20060bad9183SKris Buschelman 
200711a5261eSBarry Smith    Note:
2008476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2009476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2010476417e5SBarry Smith 
20110bad9183SKris Buschelman    Level: beginner
20120bad9183SKris Buschelman 
201311a5261eSBarry Smith .seealso: `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
20140bad9183SKris Buschelman M*/
20150bad9183SKris Buschelman 
20169371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) {
2017b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
201894ae4db5SBarry Smith   PetscBool     flg = PETSC_FALSE;
2019b5df2d14SHong Zhang 
2020b5df2d14SHong Zhang   PetscFunctionBegin;
2021*4dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2022b0a32e0cSBarry Smith   B->data = (void *)b;
20239566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps)));
2024b5df2d14SHong Zhang 
2025b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2026b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2027b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2028b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
202926fbe8dcSKarl Rupp 
20309566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
20319566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2032b5df2d14SHong Zhang 
2033b5df2d14SHong Zhang   /* build local table of row and column ownerships */
20349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2035b5df2d14SHong Zhang 
2036b5df2d14SHong Zhang   /* build cache for off array entries formed */
20379566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
203826fbe8dcSKarl Rupp 
2039b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
20400298fd71SBarry Smith   b->colmap      = NULL;
20410298fd71SBarry Smith   b->garray      = NULL;
2042b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2043b5df2d14SHong Zhang 
2044b5df2d14SHong Zhang   /* stuff used in block assembly */
2045f4259b30SLisandro Dalcin   b->barray = NULL;
2046b5df2d14SHong Zhang 
2047b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2048f4259b30SLisandro Dalcin   b->lvec    = NULL;
2049f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2050f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2051f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2052f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2053f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2054f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2055f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2056b5df2d14SHong Zhang 
2057b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2058f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2059f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2060b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2061b5df2d14SHong Zhang 
2062b5df2d14SHong Zhang   /* hash table stuff */
2063f4259b30SLisandro Dalcin   b->ht           = NULL;
2064f4259b30SLisandro Dalcin   b->hd           = NULL;
2065b5df2d14SHong Zhang   b->ht_size      = 0;
2066b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2067b5df2d14SHong Zhang   b->ht_fact      = 0;
2068b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2069b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2070b5df2d14SHong Zhang 
20717dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
20727a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
20737a868f3eSHong Zhang 
2074f4259b30SLisandro Dalcin   b->in_loc = NULL;
2075f4259b30SLisandro Dalcin   b->v_loc  = NULL;
207659ffdab8SBarry Smith   b->n_loc  = 0;
207794ae4db5SBarry Smith 
20789566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
20799566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
20809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
20819566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
20826214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
20839566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
20846214f412SHong Zhang #endif
2085d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
20869566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2087d24d4204SJose E. Roman #endif
20889566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
20899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2090aa5a9175SDahai Guo 
2091b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_TRUE;
2092b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
2093b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_TRUE;
2094b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_TRUE;
2095eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
2096b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_FALSE;
2097eb1ec7c1SStefano Zampini #else
2098b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_TRUE;
2099eb1ec7c1SStefano Zampini #endif
210013647f61SHong Zhang 
21019566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2102d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
21039566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
210494ae4db5SBarry Smith   if (flg) {
210594ae4db5SBarry Smith     PetscReal fact = 1.39;
21069566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
21079566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
210894ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
21099566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
21109566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
211194ae4db5SBarry Smith   }
2112d0609cedSBarry Smith   PetscOptionsEnd();
2113b5df2d14SHong Zhang   PetscFunctionReturn(0);
2114b5df2d14SHong Zhang }
2115b5df2d14SHong Zhang 
2116209238afSKris Buschelman /*MC
2117002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2118209238afSKris Buschelman 
211911a5261eSBarry Smith    This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator,
212011a5261eSBarry Smith    and `MATMPISBAIJ` otherwise.
2121209238afSKris Buschelman 
212211a5261eSBarry Smith    Options Database Key:
2123209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2124209238afSKris Buschelman 
2125209238afSKris Buschelman   Level: beginner
2126209238afSKris Buschelman 
212711a5261eSBarry Smith .seealso: `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2128209238afSKris Buschelman M*/
2129209238afSKris Buschelman 
2130b5df2d14SHong Zhang /*@C
2131b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2132b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2133b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2134b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2135b5df2d14SHong Zhang 
213611a5261eSBarry Smith    Collective on B
2137b5df2d14SHong Zhang 
2138b5df2d14SHong Zhang    Input Parameters:
21391c4f3114SJed Brown +  B - the matrix
2140bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2141bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2142b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2143b5df2d14SHong Zhang            submatrix  (same for all local rows)
2144b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
21456d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
21460298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
214795742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2148b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2149b5df2d14SHong Zhang            submatrix (same for all local rows).
2150b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2151c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
21520298fd71SBarry Smith            (possibly different for each block row) or NULL.
2153b5df2d14SHong Zhang 
2154b5df2d14SHong Zhang    Options Database Keys:
2155a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2156b5df2d14SHong Zhang                      block calculations (much slower)
2157a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2158b5df2d14SHong Zhang 
2159b5df2d14SHong Zhang    Notes:
2160b5df2d14SHong Zhang 
216111a5261eSBarry Smith    If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
2162b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2163b5df2d14SHong Zhang 
216449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
216549a6f317SBarry Smith 
2166b5df2d14SHong Zhang    Storage Information:
2167b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2168b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2169b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2170b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2171b5df2d14SHong Zhang 
2172b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2173b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
217411a5261eSBarry Smith    d_nz = `PETSC_DEFAULT` and d_nnz = NULL for PETSc to control dynamic
2175b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2176b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2177b5df2d14SHong Zhang 
217811a5261eSBarry Smith    You can call `MatGetInfo()` to get information on how effective the preallocation was;
2179aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2180aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2181aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2182aa95bbe8SBarry Smith 
2183b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2184b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2185b5df2d14SHong Zhang 
2186b5df2d14SHong Zhang .vb
2187b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2188a4b1a0f6SJed Brown           --------------------------
2189c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2190c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2191c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2192a4b1a0f6SJed Brown           --------------------------
2193b5df2d14SHong Zhang .ve
2194b5df2d14SHong Zhang 
2195b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2196b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
21976d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
219811a5261eSBarry Smith    `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2199b5df2d14SHong Zhang 
22006d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22016d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2202c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2203c2fc9fa9SBarry Smith 
2204b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2205b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2206b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2207b5df2d14SHong Zhang    matrices.
2208b5df2d14SHong Zhang 
2209b5df2d14SHong Zhang    Level: intermediate
2210b5df2d14SHong Zhang 
221111a5261eSBarry Smith .seealso: `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2212b5df2d14SHong Zhang @*/
22139371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) {
2214b5df2d14SHong Zhang   PetscFunctionBegin;
22156ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
22166ba663aaSJed Brown   PetscValidType(B, 1);
22176ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2218cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
2219b5df2d14SHong Zhang   PetscFunctionReturn(0);
2220b5df2d14SHong Zhang }
2221b5df2d14SHong Zhang 
2222a30f8f8cSSatish Balay /*@C
222311a5261eSBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`,
2224a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2225a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2226a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2227a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2228a30f8f8cSSatish Balay 
2229d083f849SBarry Smith    Collective
2230a30f8f8cSSatish Balay 
2231a30f8f8cSSatish Balay    Input Parameters:
2232a30f8f8cSSatish Balay +  comm - MPI communicator
223311a5261eSBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
2234bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
223511a5261eSBarry Smith .  m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
2236a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2237a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
223811a5261eSBarry Smith .  n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
2239a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2240a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
224111a5261eSBarry Smith .  M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
224211a5261eSBarry Smith .  N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
2243a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2244a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2245a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
22466d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
22470298fd71SBarry Smith            (possibly different for each block block row) or NULL.
224895742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
224995742e49SBarry Smith            set its value even if it is zero.
2250a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2251a30f8f8cSSatish Balay            submatrix (same for all local rows).
2252a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2253a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
22540298fd71SBarry Smith            each block row) or NULL.
2255a30f8f8cSSatish Balay 
2256a30f8f8cSSatish Balay    Output Parameter:
2257a30f8f8cSSatish Balay .  A - the matrix
2258a30f8f8cSSatish Balay 
2259a30f8f8cSSatish Balay    Options Database Keys:
2260a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2261a30f8f8cSSatish Balay                      block calculations (much slower)
2262a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2263a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2264a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2265a30f8f8cSSatish Balay 
226611a5261eSBarry Smith    It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2267f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
226811a5261eSBarry Smith    [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
2269175b88e8SBarry Smith 
2270a30f8f8cSSatish Balay    Notes:
2271d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
22726d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2273d1be2dadSMatthew Knepley 
2274a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2275a30f8f8cSSatish Balay    (possibly both).
2276a30f8f8cSSatish Balay 
227711a5261eSBarry Smith    If` PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
2278a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2279a30f8f8cSSatish Balay 
228049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
228149a6f317SBarry Smith 
2282a30f8f8cSSatish Balay    Storage Information:
2283a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2284a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2285a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2286a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2287a30f8f8cSSatish Balay 
2288a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2289a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
22900298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2291a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2292a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2293a30f8f8cSSatish Balay 
2294a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2295a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2296a30f8f8cSSatish Balay 
2297a30f8f8cSSatish Balay .vb
2298a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2299a4b1a0f6SJed Brown           --------------------------
2300c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2301c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2302c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2303a4b1a0f6SJed Brown           --------------------------
2304a30f8f8cSSatish Balay .ve
2305a30f8f8cSSatish Balay 
2306a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2307a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
23086d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
230911a5261eSBarry Smith    MatSeqSBAIJ format and the o submatrix in `MATSEQBAIJ` format.
2310a30f8f8cSSatish Balay 
23116d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23126d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2313a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2314a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2315a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2316a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2317a30f8f8cSSatish Balay    matrices.
2318a30f8f8cSSatish Balay 
2319a30f8f8cSSatish Balay    Level: intermediate
2320a30f8f8cSSatish Balay 
232111a5261eSBarry Smith .seealso: `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`
2322a30f8f8cSSatish Balay @*/
2323a30f8f8cSSatish Balay 
23249371c9d4SSatish Balay PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) {
23251302d50aSBarry Smith   PetscMPIInt size;
2326a30f8f8cSSatish Balay 
2327a30f8f8cSSatish Balay   PetscFunctionBegin;
23289566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
23299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
23309566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2331273d9f13SBarry Smith   if (size > 1) {
23329566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISBAIJ));
23339566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2334273d9f13SBarry Smith   } else {
23359566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSBAIJ));
23369566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2337273d9f13SBarry Smith   }
2338a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2339a30f8f8cSSatish Balay }
2340a30f8f8cSSatish Balay 
23419371c9d4SSatish Balay static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) {
2342a30f8f8cSSatish Balay   Mat           mat;
2343a30f8f8cSSatish Balay   Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2344d0f46423SBarry Smith   PetscInt      len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2345387bc808SHong Zhang   PetscScalar  *array;
2346a30f8f8cSSatish Balay 
2347a30f8f8cSSatish Balay   PetscFunctionBegin;
2348f4259b30SLisandro Dalcin   *newmat = NULL;
234926fbe8dcSKarl Rupp 
23509566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
23519566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
23529566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
23539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
23549566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2355e1b6402fSHong Zhang 
2356d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2357273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
235882327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
23597fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
23607fff6886SHong Zhang 
2361b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ *)mat->data;
2362a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2363a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2364a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2365a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2366a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2367a30f8f8cSSatish Balay 
2368a30f8f8cSSatish Balay   a->size         = oldmat->size;
2369a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2370a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2371a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2372f4259b30SLisandro Dalcin   a->rowindices   = NULL;
2373f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
2374a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2375f4259b30SLisandro Dalcin   a->barray       = NULL;
2376899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2377899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2378899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2379899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2380a30f8f8cSSatish Balay 
2381a30f8f8cSSatish Balay   /* hash table stuff */
2382f4259b30SLisandro Dalcin   a->ht           = NULL;
2383f4259b30SLisandro Dalcin   a->hd           = NULL;
2384a30f8f8cSSatish Balay   a->ht_size      = 0;
2385a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2386a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2387a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2388a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2389a30f8f8cSSatish Balay 
23909566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2391a30f8f8cSSatish Balay   if (oldmat->colmap) {
2392a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
23939566063dSJacob Faibussowitsch     PetscCall(PetscTableCreateCopy(oldmat->colmap, &a->colmap));
2394a30f8f8cSSatish Balay #else
23959566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
23969566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2397a30f8f8cSSatish Balay #endif
2398f4259b30SLisandro Dalcin   } else a->colmap = NULL;
2399387bc808SHong Zhang 
2400a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) {
24019566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len, &a->garray));
24029566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2403f4259b30SLisandro Dalcin   } else a->garray = NULL;
2404a30f8f8cSSatish Balay 
24059566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
24069566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
24079566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
240882327fa8SHong Zhang 
24099566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
24109566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
2411387bc808SHong Zhang 
24129566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(a->slvec1, &nt));
24139566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec1, &array));
24149566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
24159566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
24169566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec1, &array));
24179566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &array));
24189566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
24199566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &array));
2420387bc808SHong Zhang 
2421387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
24229566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2423387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
242482327fa8SHong Zhang 
24259566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
24269566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
24279566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2428a30f8f8cSSatish Balay   *newmat = mat;
2429a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2430a30f8f8cSSatish Balay }
2431a30f8f8cSSatish Balay 
2432618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2433618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2434618cc2edSLisandro Dalcin 
24359371c9d4SSatish Balay PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) {
24367f489da9SVaclav Hapla   PetscBool isbinary;
243795936485SShri Abhyankar 
243895936485SShri Abhyankar   PetscFunctionBegin;
24399566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
24405f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
24419566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
244295936485SShri Abhyankar   PetscFunctionReturn(0);
244395936485SShri Abhyankar }
244495936485SShri Abhyankar 
24459371c9d4SSatish Balay PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) {
244624d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2447f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ *)(a->B)->data;
2448ca54ac64SHong Zhang   PetscReal     atmp;
244987828ca2SBarry Smith   PetscReal    *work, *svalues, *rvalues;
24501302d50aSBarry Smith   PetscInt      i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
24511302d50aSBarry Smith   PetscMPIInt   rank, size;
24521302d50aSBarry Smith   PetscInt     *rowners_bs, dest, count, source;
245387828ca2SBarry Smith   PetscScalar  *va;
24548a1c53f2SBarry Smith   MatScalar    *ba;
2455f4c0e9e4SHong Zhang   MPI_Status    stat;
245624d5174aSHong Zhang 
245724d5174aSHong Zhang   PetscFunctionBegin;
24585f80ce2aSJacob Faibussowitsch   PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
24599566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
24609566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &va));
2461f4c0e9e4SHong Zhang 
24629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
24639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2464f4c0e9e4SHong Zhang 
2465d0f46423SBarry Smith   bs  = A->rmap->bs;
2466f4c0e9e4SHong Zhang   mbs = a->mbs;
2467f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2468f4c0e9e4SHong Zhang   ba  = b->a;
2469f4c0e9e4SHong Zhang   bi  = b->i;
2470f4c0e9e4SHong Zhang   bj  = b->j;
2471f4c0e9e4SHong Zhang 
2472f4c0e9e4SHong Zhang   /* find ownerships */
2473d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2474f4c0e9e4SHong Zhang 
2475f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
24769566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs * Mbs, &work));
2477f4c0e9e4SHong Zhang 
2478f4c0e9e4SHong Zhang   /* row_max for B */
2479b8475685SHong Zhang   if (rank != size - 1) {
2480f4c0e9e4SHong Zhang     for (i = 0; i < mbs; i++) {
24819371c9d4SSatish Balay       ncols = bi[1] - bi[0];
24829371c9d4SSatish Balay       bi++;
2483f4c0e9e4SHong Zhang       brow = bs * i;
2484f4c0e9e4SHong Zhang       for (j = 0; j < ncols; j++) {
2485f4c0e9e4SHong Zhang         bcol = bs * (*bj);
2486f4c0e9e4SHong Zhang         for (kcol = 0; kcol < bs; kcol++) {
2487ca54ac64SHong Zhang           col = bcol + kcol;           /* local col index */
248804d41228SHong Zhang           col += rowners_bs[rank + 1]; /* global col index */
2489f4c0e9e4SHong Zhang           for (krow = 0; krow < bs; krow++) {
24909371c9d4SSatish Balay             atmp = PetscAbsScalar(*ba);
24919371c9d4SSatish Balay             ba++;
2492ca54ac64SHong Zhang             row = brow + krow; /* local row index */
2493ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2494f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2495f4c0e9e4SHong Zhang           }
2496f4c0e9e4SHong Zhang         }
2497f4c0e9e4SHong Zhang         bj++;
2498f4c0e9e4SHong Zhang       }
2499f4c0e9e4SHong Zhang     }
2500f4c0e9e4SHong Zhang 
2501f4c0e9e4SHong Zhang     /* send values to its owners */
2502f4c0e9e4SHong Zhang     for (dest = rank + 1; dest < size; dest++) {
2503f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2504ca54ac64SHong Zhang       count   = rowners_bs[dest + 1] - rowners_bs[dest];
25059566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2506ca54ac64SHong Zhang     }
2507f4c0e9e4SHong Zhang   }
2508f4c0e9e4SHong Zhang 
2509f4c0e9e4SHong Zhang   /* receive values */
2510ca54ac64SHong Zhang   if (rank) {
2511f4c0e9e4SHong Zhang     rvalues = work;
2512ca54ac64SHong Zhang     count   = rowners_bs[rank + 1] - rowners_bs[rank];
2513f4c0e9e4SHong Zhang     for (source = 0; source < rank; source++) {
25149566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2515f4c0e9e4SHong Zhang       /* process values */
2516f4c0e9e4SHong Zhang       for (i = 0; i < count; i++) {
2517ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2518f4c0e9e4SHong Zhang       }
2519f4c0e9e4SHong Zhang     }
2520ca54ac64SHong Zhang   }
2521f4c0e9e4SHong Zhang 
25229566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &va));
25239566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
252424d5174aSHong Zhang   PetscFunctionReturn(0);
252524d5174aSHong Zhang }
25262798e883SHong Zhang 
25279371c9d4SSatish Balay PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) {
25282798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ *)matin->data;
2529d0f46423SBarry Smith   PetscInt           mbs = mat->mbs, bs = matin->rmap->bs;
25303649974fSBarry Smith   PetscScalar       *x, *ptr, *from;
2531ffe4fb16SHong Zhang   Vec                bb1;
25323649974fSBarry Smith   const PetscScalar *b;
2533ffe4fb16SHong Zhang 
2534ffe4fb16SHong Zhang   PetscFunctionBegin;
25355f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
25365f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2537ffe4fb16SHong Zhang 
2538a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
25399566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2540a2b30743SBarry Smith     PetscFunctionReturn(0);
2541a2b30743SBarry Smith   }
2542a2b30743SBarry Smith 
2543ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2544ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
25459566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2546ffe4fb16SHong Zhang       its--;
2547ffe4fb16SHong Zhang     }
2548ffe4fb16SHong Zhang 
25499566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &bb1));
2550ffe4fb16SHong Zhang     while (its--) {
2551ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
25529566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2553ffe4fb16SHong Zhang 
2554ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25559566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0, &ptr));
25569566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
25579566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, x, bs * mbs));
25589566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2559ffe4fb16SHong Zhang 
25609566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0, -1.0));
2561ffe4fb16SHong Zhang 
2562ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25639566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1, &ptr));
25649566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
25659566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, b, bs * mbs));
25669566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2567ffe4fb16SHong Zhang 
2568ffe4fb16SHong Zhang       /* set slvec1b = 0 */
25699566063dSJacob Faibussowitsch       PetscCall(VecSet(mat->slvec1b, 0.0));
2570ffe4fb16SHong Zhang 
25719566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
25729566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
25739566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
25749566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2575ffe4fb16SHong Zhang 
2576ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
25779566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2578ffe4fb16SHong Zhang 
2579ffe4fb16SHong Zhang       /* local diagonal sweep */
25809566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2581ffe4fb16SHong Zhang     }
25829566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2583fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
25849566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2585fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
25869566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2587fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2588fa22f6d0SBarry Smith     Vec                xx1;
2589ace3abfcSBarry Smith     PetscBool          hasop;
259020f1ed55SBarry Smith     const PetscScalar *diag;
2591887ee2caSBarry Smith     PetscScalar       *sl, scale = (omega - 2.0) / omega;
259220f1ed55SBarry Smith     PetscInt           i, n;
2593fa22f6d0SBarry Smith 
2594fa22f6d0SBarry Smith     if (!mat->xx1) {
25959566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->xx1));
25969566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->bb1));
2597fa22f6d0SBarry Smith     }
2598fa22f6d0SBarry Smith     xx1 = mat->xx1;
2599fa22f6d0SBarry Smith     bb1 = mat->bb1;
2600fa22f6d0SBarry Smith 
26019566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2602fa22f6d0SBarry Smith 
2603fa22f6d0SBarry Smith     if (!mat->diag) {
2604effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26059566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
26069566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
2607fa22f6d0SBarry Smith     }
26089566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2609fa22f6d0SBarry Smith 
2610fa22f6d0SBarry Smith     if (hasop) {
26119566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
26129566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a, scale, bb));
261320f1ed55SBarry Smith     } else {
261420f1ed55SBarry Smith       /*
261520f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
26169566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
26179566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
261820f1ed55SBarry Smith       */
26199566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a, &sl));
26209566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag, &diag));
26219566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26229566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26239566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx, &n));
2624887ee2caSBarry Smith       if (omega == 1.0) {
262526fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
26269566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * n));
2627887ee2caSBarry Smith       } else {
262826fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
26299566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0 * n));
2630887ee2caSBarry Smith       }
26319566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a, &sl));
26329566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag, &diag));
26339566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
26349566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
263520f1ed55SBarry Smith     }
2636fa22f6d0SBarry Smith 
2637fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
26389566063dSJacob Faibussowitsch     PetscCall(VecSet(mat->slvec1b, 0.0));
26399566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
26409566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0, &from));
26419566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx, &x));
26429566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from, x, bs * mbs));
26439566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0, &from));
26449566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx, &x));
26459566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26469566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26479566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2648fa22f6d0SBarry Smith 
2649fa22f6d0SBarry Smith     /* local sweep */
26509566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
26519566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
2652f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
2653ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2654ffe4fb16SHong Zhang }
2655ffe4fb16SHong Zhang 
2656dfb205c3SBarry Smith /*@
265711a5261eSBarry Smith      MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard
2658dfb205c3SBarry Smith          CSR format the local rows.
2659dfb205c3SBarry Smith 
2660d083f849SBarry Smith    Collective
2661dfb205c3SBarry Smith 
2662dfb205c3SBarry Smith    Input Parameters:
2663dfb205c3SBarry Smith +  comm - MPI communicator
2664dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
266511a5261eSBarry Smith .  m - number of local rows (Cannot be `PETSC_DECIDE`)
2666dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
266711a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
2668dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
266911a5261eSBarry Smith .  M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
267011a5261eSBarry Smith .  N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
2671483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2672dfb205c3SBarry Smith .   j - column indices
2673dfb205c3SBarry Smith -   a - matrix values
2674dfb205c3SBarry Smith 
2675dfb205c3SBarry Smith    Output Parameter:
2676dfb205c3SBarry Smith .   mat - the matrix
2677dfb205c3SBarry Smith 
2678dfb205c3SBarry Smith    Level: intermediate
2679dfb205c3SBarry Smith 
2680dfb205c3SBarry Smith    Notes:
2681dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2682dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2683dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2684dfb205c3SBarry Smith 
2685dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2686dfb205c3SBarry Smith 
268711a5261eSBarry Smith .seealso: `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2688db781477SPatrick Sanan           `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
2689dfb205c3SBarry Smith @*/
26909371c9d4SSatish Balay PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) {
2691dfb205c3SBarry Smith   PetscFunctionBegin;
26925f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
26935f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
26949566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
26959566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
26969566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPISBAIJ));
26979566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
2698dfb205c3SBarry Smith   PetscFunctionReturn(0);
2699dfb205c3SBarry Smith }
2700dfb205c3SBarry Smith 
2701dfb205c3SBarry Smith /*@C
270211a5261eSBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values
2703dfb205c3SBarry Smith 
2704d083f849SBarry Smith    Collective
2705dfb205c3SBarry Smith 
2706dfb205c3SBarry Smith    Input Parameters:
27071c4f3114SJed Brown +  B - the matrix
2708dfb205c3SBarry Smith .  bs - the block size
2709dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2710dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2711dfb205c3SBarry Smith -  v - optional values in the matrix
2712dfb205c3SBarry Smith 
2713664954b6SBarry Smith    Level: advanced
2714664954b6SBarry Smith 
2715664954b6SBarry Smith    Notes:
27160cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
27170cd7f59aSBarry Smith    and usually the numerical values as well
27180cd7f59aSBarry Smith 
271950c5228eSBarry Smith    Any entries below the diagonal are ignored
2720dfb205c3SBarry Smith 
272111a5261eSBarry Smith .seealso: `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`
2722dfb205c3SBarry Smith @*/
27239371c9d4SSatish Balay PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) {
2724dfb205c3SBarry Smith   PetscFunctionBegin;
2725cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
2726dfb205c3SBarry Smith   PetscFunctionReturn(0);
2727dfb205c3SBarry Smith }
2728dfb205c3SBarry Smith 
27299371c9d4SSatish Balay PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) {
273010c56fdeSHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
273110c56fdeSHong Zhang   PetscInt    *indx;
273210c56fdeSHong Zhang   PetscScalar *values;
2733dfb205c3SBarry Smith 
27344dcd73b1SHong Zhang   PetscFunctionBegin;
27359566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
273610c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
273710c56fdeSHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2738de25e9cbSPierre Jolivet     PetscInt     *dnz, *onz, mbs, Nbs, nbs;
273910c56fdeSHong Zhang     PetscInt     *bindx, rmax = a->rmax, j;
2740de25e9cbSPierre Jolivet     PetscMPIInt   rank, size;
27414dcd73b1SHong Zhang 
27429566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
27439371c9d4SSatish Balay     mbs = m / bs;
27449371c9d4SSatish Balay     Nbs = N / cbs;
274548a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2746da91a574SPierre Jolivet     nbs = n / cbs;
27474dcd73b1SHong Zhang 
27489566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
2749d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2750de25e9cbSPierre Jolivet 
27519566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
27529566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
2753de25e9cbSPierre Jolivet     if (rank == size - 1) {
2754de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
27555f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2756de25e9cbSPierre Jolivet     }
2757de25e9cbSPierre Jolivet 
2758d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
27599566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
276010c56fdeSHong Zhang     for (i = 0; i < mbs; i++) {
27619566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
27624dcd73b1SHong Zhang       nnz = nnz / bs;
27634dcd73b1SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
27649566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
27659566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
27664dcd73b1SHong Zhang     }
27679566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
27689566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
27694dcd73b1SHong Zhang 
27709566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
27719566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
27729566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
27739566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATSBAIJ));
27749566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
27759566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2776d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
27774dcd73b1SHong Zhang   }
27784dcd73b1SHong Zhang 
277910c56fdeSHong Zhang   /* numeric phase */
27809566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
27819566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
27824dcd73b1SHong Zhang 
27839566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
27844dcd73b1SHong Zhang   for (i = 0; i < m; i++) {
27859566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
27864dcd73b1SHong Zhang     Ii = i + rstart;
27879566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
27889566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
27894dcd73b1SHong Zhang   }
27909566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
27919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
27929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
27934dcd73b1SHong Zhang   PetscFunctionReturn(0);
27944dcd73b1SHong Zhang }
2795