1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 103a30f8f8cSSatish Balay N = nrow++ - 1; \ 104a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 105a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 106a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 107a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 110a30f8f8cSSatish Balay rp[_i] = bcol; \ 111a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 112a30f8f8cSSatish Balay a_noinsert:; \ 113a30f8f8cSSatish Balay ailen[brow] = nrow; \ 114a30f8f8cSSatish Balay } 115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 116a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 117a30f8f8cSSatish Balay { \ 118a30f8f8cSSatish Balay brow = row/bs; \ 119a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 120a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 121a30f8f8cSSatish Balay bcol = col/bs; \ 122a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 123a30f8f8cSSatish Balay low = 0; high = nrow; \ 124a30f8f8cSSatish Balay while (high-low > 3) { \ 125a30f8f8cSSatish Balay t = (low+high)/2; \ 126a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 127a30f8f8cSSatish Balay else low = t; \ 128a30f8f8cSSatish Balay } \ 129a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 130a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 131a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 132a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 133a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 134a30f8f8cSSatish Balay else *bap = value; \ 135a30f8f8cSSatish Balay goto b_noinsert; \ 136a30f8f8cSSatish Balay } \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 139085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 140421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay b_noinsert:; \ 151a30f8f8cSSatish Balay bilen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #endif 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1564a2ae208SSatish Balay #undef __FUNCT__ 1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 159a30f8f8cSSatish Balay { 160a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 161dfbe8321SBarry Smith PetscErrorCode ierr; 1621302d50aSBarry Smith PetscInt i,N = m*n; 163a30f8f8cSSatish Balay MatScalar *vsingle; 164a30f8f8cSSatish Balay 165a30f8f8cSSatish Balay PetscFunctionBegin; 166a30f8f8cSSatish Balay if (N > b->setvalueslen) { 16705b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 16882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 169a30f8f8cSSatish Balay b->setvalueslen = N; 170a30f8f8cSSatish Balay } 171a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 172a30f8f8cSSatish Balay 173a30f8f8cSSatish Balay for (i=0; i<N; i++) { 174a30f8f8cSSatish Balay vsingle[i] = v[i]; 175a30f8f8cSSatish Balay } 176a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 177a30f8f8cSSatish Balay PetscFunctionReturn(0); 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 1804a2ae208SSatish Balay #undef __FUNCT__ 1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 183a30f8f8cSSatish Balay { 184a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 185dfbe8321SBarry Smith PetscErrorCode ierr; 1861302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 187a30f8f8cSSatish Balay MatScalar *vsingle; 188a30f8f8cSSatish Balay 189a30f8f8cSSatish Balay PetscFunctionBegin; 190a30f8f8cSSatish Balay if (N > b->setvalueslen) { 19105b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 19282502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 193a30f8f8cSSatish Balay b->setvalueslen = N; 194a30f8f8cSSatish Balay } 195a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 196a30f8f8cSSatish Balay for (i=0; i<N; i++) { 197a30f8f8cSSatish Balay vsingle[i] = v[i]; 198a30f8f8cSSatish Balay } 199a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 200a30f8f8cSSatish Balay PetscFunctionReturn(0); 201a30f8f8cSSatish Balay } 202a30f8f8cSSatish Balay #endif 203a30f8f8cSSatish Balay 204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 205a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 206a30f8f8cSSatish Balay */ 2074a2ae208SSatish Balay #undef __FUNCT__ 208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar" 2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 210a30f8f8cSSatish Balay { 211a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 212a30f8f8cSSatish Balay MatScalar value; 213b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 214dfbe8321SBarry Smith PetscErrorCode ierr; 2151302d50aSBarry Smith PetscInt i,j,row,col; 216899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 217899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 218899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 219a30f8f8cSSatish Balay 220a30f8f8cSSatish Balay /* Some Variables required in the macro */ 221a30f8f8cSSatish Balay Mat A = baij->A; 222a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2231302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 224a30f8f8cSSatish Balay MatScalar *aa=a->a; 225a30f8f8cSSatish Balay 226a30f8f8cSSatish Balay Mat B = baij->B; 227a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2281302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 229a30f8f8cSSatish Balay MatScalar *ba=b->a; 230a30f8f8cSSatish Balay 2311302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2321302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 233a30f8f8cSSatish Balay MatScalar *ap,*bap; 234a30f8f8cSSatish Balay 235a30f8f8cSSatish Balay /* for stash */ 236910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 237910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 238a30f8f8cSSatish Balay 239a30f8f8cSSatish Balay PetscFunctionBegin; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay if (!baij->donotstash){ 24259ffdab8SBarry Smith if (n > baij->n_loc) { 24359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 24459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 24559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 24659ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 24759ffdab8SBarry Smith baij->n_loc = n; 24859ffdab8SBarry Smith } 24959ffdab8SBarry Smith in_loc = baij->in_loc; 25059ffdab8SBarry Smith v_loc = baij->v_loc; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay for (i=0; i<m; i++) { 254a30f8f8cSSatish Balay if (im[i] < 0) continue; 2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 256899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 257a30f8f8cSSatish Balay #endif 258a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 259a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 260a30f8f8cSSatish Balay for (j=0; j<n; j++) { 26101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 26201b2bd88SHong Zhang if (a->ignore_ltriangular){ 26301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 26401b2bd88SHong Zhang } else { 265*4e0d8c25SBarry Smith SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 26601b2bd88SHong Zhang } 26701b2bd88SHong Zhang } 268a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 269a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 270a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 271a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 272a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 273a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 274a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 275a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 277899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);} 278a30f8f8cSSatish Balay #endif 279a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 280a30f8f8cSSatish Balay if (mat->was_assembled) { 281a30f8f8cSSatish Balay if (!baij->colmap) { 282653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 285a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28671730473SSatish Balay col = col - 1; 287a30f8f8cSSatish Balay #else 28871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 289a30f8f8cSSatish Balay #endif 290a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 291a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 292a30f8f8cSSatish Balay col = in[j]; 293a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 294a30f8f8cSSatish Balay B = baij->B; 295a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 296a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 297a30f8f8cSSatish Balay ba=b->a; 29871730473SSatish Balay } else col += in[j]%bs; 299a30f8f8cSSatish Balay } else col = in[j]; 300a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 301a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 302a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay } 305a30f8f8cSSatish Balay } else { /* off processor entry */ 306a30f8f8cSSatish Balay if (!baij->donotstash) { 307a30f8f8cSSatish Balay n_loc = 0; 308a30f8f8cSSatish Balay for (j=0; j<n; j++){ 309f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 310a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 311a30f8f8cSSatish Balay if (roworiented) { 312a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 313a30f8f8cSSatish Balay } else { 314a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay n_loc++; 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 319a30f8f8cSSatish Balay } 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay } 322a30f8f8cSSatish Balay PetscFunctionReturn(0); 323a30f8f8cSSatish Balay } 324a30f8f8cSSatish Balay 3254a2ae208SSatish Balay #undef __FUNCT__ 326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 328a30f8f8cSSatish Balay { 3290880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 330f15d580aSBarry Smith const MatScalar *value; 331f15d580aSBarry Smith MatScalar *barray=baij->barray; 3320880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 333dfbe8321SBarry Smith PetscErrorCode ierr; 334899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 335899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 336899cda47SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2; 3370880e062SHong Zhang 338a30f8f8cSSatish Balay PetscFunctionBegin; 3390880e062SHong Zhang if(!barray) { 3400880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3410880e062SHong Zhang baij->barray = barray; 3420880e062SHong Zhang } 3430880e062SHong Zhang 3440880e062SHong Zhang if (roworiented) { 3450880e062SHong Zhang stepval = (n-1)*bs; 3460880e062SHong Zhang } else { 3470880e062SHong Zhang stepval = (m-1)*bs; 3480880e062SHong Zhang } 3490880e062SHong Zhang for (i=0; i<m; i++) { 3500880e062SHong Zhang if (im[i] < 0) continue; 3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 35277431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3530880e062SHong Zhang #endif 3540880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3550880e062SHong Zhang row = im[i] - rstart; 3560880e062SHong Zhang for (j=0; j<n; j++) { 3570880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3580880e062SHong Zhang if ((roworiented) && (n == 1)) { 359f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3600880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 361f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3620880e062SHong Zhang } else { /* Here a copy is required */ 3630880e062SHong Zhang if (roworiented) { 3640880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3650880e062SHong Zhang } else { 3660880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3670880e062SHong Zhang } 3680880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3690880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3700880e062SHong Zhang *barray++ = *value++; 3710880e062SHong Zhang } 3720880e062SHong Zhang } 3730880e062SHong Zhang barray -=bs2; 3740880e062SHong Zhang } 3750880e062SHong Zhang 3760880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3770880e062SHong Zhang col = in[j] - cstart; 3780880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3790880e062SHong Zhang } 3800880e062SHong Zhang else if (in[j] < 0) continue; 3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 38277431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3830880e062SHong Zhang #endif 3840880e062SHong Zhang else { 3850880e062SHong Zhang if (mat->was_assembled) { 3860880e062SHong Zhang if (!baij->colmap) { 387653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3880880e062SHong Zhang } 3890880e062SHong Zhang 3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3921302d50aSBarry Smith { PetscInt data; 3930880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3940880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3950880e062SHong Zhang } 3960880e062SHong Zhang #else 3970880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3980880e062SHong Zhang #endif 3990880e062SHong Zhang #endif 4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4010880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4020880e062SHong Zhang col = (col - 1)/bs; 4030880e062SHong Zhang #else 4040880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4050880e062SHong Zhang #endif 4060880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4070880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4080880e062SHong Zhang col = in[j]; 4090880e062SHong Zhang } 4100880e062SHong Zhang } 4110880e062SHong Zhang else col = in[j]; 412e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4130880e062SHong Zhang } 4140880e062SHong Zhang } 4150880e062SHong Zhang } else { 4160880e062SHong Zhang if (!baij->donotstash) { 4170880e062SHong Zhang if (roworiented) { 4180880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4190880e062SHong Zhang } else { 4200880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4210880e062SHong Zhang } 4220880e062SHong Zhang } 4230880e062SHong Zhang } 4240880e062SHong Zhang } 4250880e062SHong Zhang PetscFunctionReturn(0); 426a30f8f8cSSatish Balay } 427a30f8f8cSSatish Balay 4284a2ae208SSatish Balay #undef __FUNCT__ 4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 431a30f8f8cSSatish Balay { 432f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4336849ba73SBarry Smith PetscErrorCode ierr; 434899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 435899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 436a30f8f8cSSatish Balay 437a30f8f8cSSatish Balay PetscFunctionBegin; 438a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43997e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 440899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 441a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 442a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 443a30f8f8cSSatish Balay for (j=0; j<n; j++) { 44497e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 445899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 446a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 447a30f8f8cSSatish Balay col = idxn[j] - bscstart; 448c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 449a30f8f8cSSatish Balay } else { 450a30f8f8cSSatish Balay if (!baij->colmap) { 451653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 452a30f8f8cSSatish Balay } 453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 454a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 455a30f8f8cSSatish Balay data --; 456a30f8f8cSSatish Balay #else 457a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 458a30f8f8cSSatish Balay #endif 459a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 460a30f8f8cSSatish Balay else { 461a30f8f8cSSatish Balay col = data + idxn[j]%bs; 462e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 463a30f8f8cSSatish Balay } 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay } 466a30f8f8cSSatish Balay } else { 46729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 468a30f8f8cSSatish Balay } 469a30f8f8cSSatish Balay } 470a30f8f8cSSatish Balay PetscFunctionReturn(0); 471a30f8f8cSSatish Balay } 472a30f8f8cSSatish Balay 4734a2ae208SSatish Balay #undef __FUNCT__ 4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 476a30f8f8cSSatish Balay { 477a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 478dfbe8321SBarry Smith PetscErrorCode ierr; 479a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 480a30f8f8cSSatish Balay 481a30f8f8cSSatish Balay PetscFunctionBegin; 482a30f8f8cSSatish Balay if (baij->size == 1) { 483a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 484a30f8f8cSSatish Balay } else { 485a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 486f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 487a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 488a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 489a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 490a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 491d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 492a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 493a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4940b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4950b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4960b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4970b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 498899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 499899cda47SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs; 5000b8dc8d2SHong Zhang MatScalar *v; 5010b8dc8d2SHong Zhang 502899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 503899cda47SBarry Smith rsum2 = rsum + mat->cmap.N; 504899cda47SBarry Smith ierr = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 5050b8dc8d2SHong Zhang /* Amat */ 5060b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5070b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5080b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5090b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5100b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5110b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5120b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5130b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5140b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5150b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5160b8dc8d2SHong Zhang /* non-diagonal block */ 5170b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5180b8dc8d2SHong Zhang } 5190b8dc8d2SHong Zhang } 5200b8dc8d2SHong Zhang } 5210b8dc8d2SHong Zhang } 5220b8dc8d2SHong Zhang /* Bmat */ 5230b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5240b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5250b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5260b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5270b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5280b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5290b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5300b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5310b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5320b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5330b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5340b8dc8d2SHong Zhang } 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang } 5370b8dc8d2SHong Zhang } 538899cda47SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5390b8dc8d2SHong Zhang *norm = 0.0; 540899cda47SBarry Smith for (col=0; col<mat->cmap.N; col++) { 5410b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5420b8dc8d2SHong Zhang } 5430b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 544a30f8f8cSSatish Balay } else { 54529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay } 548a30f8f8cSSatish Balay PetscFunctionReturn(0); 549a30f8f8cSSatish Balay } 550a30f8f8cSSatish Balay 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 554a30f8f8cSSatish Balay { 555a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 556dfbe8321SBarry Smith PetscErrorCode ierr; 5571302d50aSBarry Smith PetscInt nstash,reallocs; 558a30f8f8cSSatish Balay InsertMode addv; 559a30f8f8cSSatish Balay 560a30f8f8cSSatish Balay PetscFunctionBegin; 561a30f8f8cSSatish Balay if (baij->donotstash) { 562a30f8f8cSSatish Balay PetscFunctionReturn(0); 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 566a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 567a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 571a30f8f8cSSatish Balay 572899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr); 573899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 575ae15b995SBarry Smith ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 576a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 577ae15b995SBarry Smith ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 578a30f8f8cSSatish Balay PetscFunctionReturn(0); 579a30f8f8cSSatish Balay } 580a30f8f8cSSatish Balay 5814a2ae208SSatish Balay #undef __FUNCT__ 5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 584a30f8f8cSSatish Balay { 585a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 586a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5876849ba73SBarry Smith PetscErrorCode ierr; 58813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5891302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 59013f74950SBarry Smith PetscMPIInt n; 591a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 592a30f8f8cSSatish Balay MatScalar *val; 593a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 594a30f8f8cSSatish Balay 59591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 596a30f8f8cSSatish Balay PetscFunctionBegin; 597a30f8f8cSSatish Balay 598a30f8f8cSSatish Balay if (!baij->donotstash) { 599a30f8f8cSSatish Balay while (1) { 600a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 601a30f8f8cSSatish Balay if (!flg) break; 602a30f8f8cSSatish Balay 603a30f8f8cSSatish Balay for (i=0; i<n;) { 604a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 605a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 606a30f8f8cSSatish Balay if (j < n) ncols = j-i; 607a30f8f8cSSatish Balay else ncols = n-i; 608a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 609a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 610a30f8f8cSSatish Balay i = j; 611a30f8f8cSSatish Balay } 612a30f8f8cSSatish Balay } 613a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 614a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 615a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 616a30f8f8cSSatish Balay restore the original flags */ 617a30f8f8cSSatish Balay r1 = baij->roworiented; 618a30f8f8cSSatish Balay r2 = a->roworiented; 61991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 620a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 621a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 62291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 623a30f8f8cSSatish Balay while (1) { 624a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 625a30f8f8cSSatish Balay if (!flg) break; 626a30f8f8cSSatish Balay 627a30f8f8cSSatish Balay for (i=0; i<n;) { 628a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 629a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 630a30f8f8cSSatish Balay if (j < n) ncols = j-i; 631a30f8f8cSSatish Balay else ncols = n-i; 632a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 633a30f8f8cSSatish Balay i = j; 634a30f8f8cSSatish Balay } 635a30f8f8cSSatish Balay } 636a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 637a30f8f8cSSatish Balay baij->roworiented = r1; 638a30f8f8cSSatish Balay a->roworiented = r2; 63991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 643a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 644a30f8f8cSSatish Balay 645a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 646a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 647a30f8f8cSSatish Balay /* 648a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 649a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 650a30f8f8cSSatish Balay */ 651a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 652a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 653a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 654c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 660a30f8f8cSSatish Balay } 66191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 662a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 663a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 664a30f8f8cSSatish Balay 665a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 666a30f8f8cSSatish Balay baij->rowvalues = 0; 6675222a1afSHong Zhang 668a30f8f8cSSatish Balay PetscFunctionReturn(0); 669a30f8f8cSSatish Balay } 670a30f8f8cSSatish Balay 671799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 6724a2ae208SSatish Balay #undef __FUNCT__ 6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 675a30f8f8cSSatish Balay { 676a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 677dfbe8321SBarry Smith PetscErrorCode ierr; 678899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 6791302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 68032077d6dSBarry Smith PetscTruth iascii,isdraw; 681b0a32e0cSBarry Smith PetscViewer sviewer; 682f3ef73ceSBarry Smith PetscViewerFormat format; 683a30f8f8cSSatish Balay 684a30f8f8cSSatish Balay PetscFunctionBegin; 68532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 686fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68732077d6dSBarry Smith if (iascii) { 688b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 689456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 690a30f8f8cSSatish Balay MatInfo info; 691a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 694899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 695899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 696a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 698a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 700b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 70107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 702a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 703a30f8f8cSSatish Balay PetscFunctionReturn(0); 704fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 70577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 706a30f8f8cSSatish Balay PetscFunctionReturn(0); 707c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 708c1490034SHong Zhang PetscFunctionReturn(0); 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay 712a30f8f8cSSatish Balay if (isdraw) { 713b0a32e0cSBarry Smith PetscDraw draw; 714a30f8f8cSSatish Balay PetscTruth isnull; 715b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 716b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 717a30f8f8cSSatish Balay } 718a30f8f8cSSatish Balay 719a30f8f8cSSatish Balay if (size == 1) { 720e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 721a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 722a30f8f8cSSatish Balay } else { 723a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 724a30f8f8cSSatish Balay Mat A; 72565d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 72665d70643SHong Zhang Mat_SeqBAIJ *Bloc; 727899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 728a30f8f8cSSatish Balay MatScalar *a; 729a30f8f8cSSatish Balay 730f204ca49SKris Buschelman /* Should this be the same type as mat? */ 731f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 732a30f8f8cSSatish Balay if (!rank) { 733f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 734a30f8f8cSSatish Balay } else { 735f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 736a30f8f8cSSatish Balay } 737f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 738899cda47SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 740a30f8f8cSSatish Balay 741a30f8f8cSSatish Balay /* copy over the A part */ 74265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 743a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7441302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 745a30f8f8cSSatish Balay 746a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 747e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 748a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 749a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 750e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 751a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 752a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 753a30f8f8cSSatish Balay col++; a += bs; 754a30f8f8cSSatish Balay } 755a30f8f8cSSatish Balay } 756a30f8f8cSSatish Balay } 757a30f8f8cSSatish Balay /* copy over the B part */ 75865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 760a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 761e9f7bc9eSHong Zhang 762e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 763a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 764a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 765a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 766a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 767799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 768a30f8f8cSSatish Balay col++; a += bs; 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 773a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 774a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 775a30f8f8cSSatish Balay /* 776a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 777b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 778a30f8f8cSSatish Balay */ 779b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 78065d70643SHong Zhang if (!rank) { 781e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 782a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 783a30f8f8cSSatish Balay } 784b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 785a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay PetscFunctionReturn(0); 788a30f8f8cSSatish Balay } 789a30f8f8cSSatish Balay 7904a2ae208SSatish Balay #undef __FUNCT__ 7914a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 792dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 793a30f8f8cSSatish Balay { 794dfbe8321SBarry Smith PetscErrorCode ierr; 79532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 796a30f8f8cSSatish Balay 797a30f8f8cSSatish Balay PetscFunctionBegin; 79832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 799fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 800b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 801fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 80232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 803a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 804a30f8f8cSSatish Balay } else { 8051302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay PetscFunctionReturn(0); 808a30f8f8cSSatish Balay } 809a30f8f8cSSatish Balay 8104a2ae208SSatish Balay #undef __FUNCT__ 8114a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 812dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 813a30f8f8cSSatish Balay { 814a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 815dfbe8321SBarry Smith PetscErrorCode ierr; 816a30f8f8cSSatish Balay 817a30f8f8cSSatish Balay PetscFunctionBegin; 818a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 819899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 820a30f8f8cSSatish Balay #endif 821a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 822a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 823a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 824a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 825a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 8269c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 827a30f8f8cSSatish Balay #else 82805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 829a30f8f8cSSatish Balay #endif 83005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 831a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 832a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 83340781036SHong Zhang if (baij->slvec0) { 83440781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 83540781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 83640781036SHong Zhang } 83740781036SHong Zhang if (baij->slvec1) { 83840781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83940781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 84040781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 84140781036SHong Zhang } 84240781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 84305b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 84405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 84505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 846a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 84705b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 848a30f8f8cSSatish Balay #endif 84959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 85059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 851899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 852a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 853901853e0SKris Buschelman 854dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 855901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 856901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 857901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 858901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 859a30f8f8cSSatish Balay PetscFunctionReturn(0); 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay 8624a2ae208SSatish Balay #undef __FUNCT__ 863a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 864dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 865a9d4b620SHong Zhang { 866a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 867dfbe8321SBarry Smith PetscErrorCode ierr; 868899cda47SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap.bs; 869a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 870a9d4b620SHong Zhang 871a9d4b620SHong Zhang PetscFunctionBegin; 872a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 873899cda47SBarry Smith if (nt != A->cmap.n) { 874a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 875a9d4b620SHong Zhang } 876a9d4b620SHong Zhang 877a9d4b620SHong Zhang /* diagonal part */ 878a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8792dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 880a9d4b620SHong Zhang 881a9d4b620SHong Zhang /* subdiagonal part */ 882a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 883899cda47SBarry Smith CHKMEMQ; 884a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8851ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8861ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 887899cda47SBarry Smith CHKMEMQ; 888a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 889899cda47SBarry Smith CHKMEMQ; 8901ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 891a9d4b620SHong Zhang 892899cda47SBarry Smith CHKMEMQ; 893ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 894899cda47SBarry Smith CHKMEMQ; 8951ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 896899cda47SBarry Smith CHKMEMQ; 897ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 898899cda47SBarry Smith CHKMEMQ; 899a9d4b620SHong Zhang /* supperdiagonal part */ 900a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 901899cda47SBarry Smith CHKMEMQ; 902a9d4b620SHong Zhang PetscFunctionReturn(0); 903a9d4b620SHong Zhang } 904a9d4b620SHong Zhang 905a9d4b620SHong Zhang #undef __FUNCT__ 90640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 907dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 908a30f8f8cSSatish Balay { 909a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 910dfbe8321SBarry Smith PetscErrorCode ierr; 9111302d50aSBarry Smith PetscInt nt; 912a30f8f8cSSatish Balay 913a30f8f8cSSatish Balay PetscFunctionBegin; 914a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 915899cda47SBarry Smith if (nt != A->cmap.n) { 91629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 917a30f8f8cSSatish Balay } 918a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 919899cda47SBarry Smith if (nt != A->rmap.N) { 92029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 921a30f8f8cSSatish Balay } 92265d70643SHong Zhang 923ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 924b941877fSHong Zhang /* do diagonal part */ 925b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 926b941877fSHong Zhang /* do supperdiagonal part */ 927ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 928b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 929b941877fSHong Zhang /* do subdiagonal part */ 930b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 931ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 932ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 93365d70643SHong Zhang 934a30f8f8cSSatish Balay PetscFunctionReturn(0); 935a30f8f8cSSatish Balay } 936a30f8f8cSSatish Balay 9374a2ae208SSatish Balay #undef __FUNCT__ 9384a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 939dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 940a30f8f8cSSatish Balay { 941de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 942dfbe8321SBarry Smith PetscErrorCode ierr; 943899cda47SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap.bs; 944a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 945a9d4b620SHong Zhang 946a9d4b620SHong Zhang PetscFunctionBegin; 947a9d4b620SHong Zhang /* 94856faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 94956faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 950a9d4b620SHong Zhang */ 951a9d4b620SHong Zhang /* diagonal part */ 952a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9532dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 954a9d4b620SHong Zhang 955a9d4b620SHong Zhang /* subdiagonal part */ 956a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 957a9d4b620SHong Zhang 958a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9591ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9601ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 961a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9621ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 963a9d4b620SHong Zhang 964ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9651ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 966ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 967a9d4b620SHong Zhang 968a9d4b620SHong Zhang /* supperdiagonal part */ 969a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 970a9d4b620SHong Zhang 971a9d4b620SHong Zhang PetscFunctionReturn(0); 972a9d4b620SHong Zhang } 973a9d4b620SHong Zhang 974a9d4b620SHong Zhang #undef __FUNCT__ 975a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 976dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 977a9d4b620SHong Zhang { 978a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 979dfbe8321SBarry Smith PetscErrorCode ierr; 980a30f8f8cSSatish Balay 981a30f8f8cSSatish Balay PetscFunctionBegin; 982ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 983b941877fSHong Zhang /* do diagonal part */ 984b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 985b941877fSHong Zhang /* do supperdiagonal part */ 986ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 987de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 988de8b6608SHong Zhang 989b941877fSHong Zhang /* do subdiagonal part */ 990a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 991ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 992ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 993aa482183SHong Zhang 994a30f8f8cSSatish Balay PetscFunctionReturn(0); 995a30f8f8cSSatish Balay } 996a30f8f8cSSatish Balay 997a30f8f8cSSatish Balay /* 998a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 999a30f8f8cSSatish Balay diagonal block 1000a30f8f8cSSatish Balay */ 10014a2ae208SSatish Balay #undef __FUNCT__ 10024a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1003dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1004a30f8f8cSSatish Balay { 1005a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1006dfbe8321SBarry Smith PetscErrorCode ierr; 1007a30f8f8cSSatish Balay 1008a30f8f8cSSatish Balay PetscFunctionBegin; 1009899cda47SBarry Smith /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1010a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1011a30f8f8cSSatish Balay PetscFunctionReturn(0); 1012a30f8f8cSSatish Balay } 1013a30f8f8cSSatish Balay 10144a2ae208SSatish Balay #undef __FUNCT__ 10154a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1016f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1017a30f8f8cSSatish Balay { 1018a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1019dfbe8321SBarry Smith PetscErrorCode ierr; 1020a30f8f8cSSatish Balay 1021a30f8f8cSSatish Balay PetscFunctionBegin; 1022f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1023f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1024a30f8f8cSSatish Balay PetscFunctionReturn(0); 1025a30f8f8cSSatish Balay } 1026a30f8f8cSSatish Balay 10274a2ae208SSatish Balay #undef __FUNCT__ 10284a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10291302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1030a30f8f8cSSatish Balay { 1031d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1032d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1033d0d4cfc2SHong Zhang PetscErrorCode ierr; 1034899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1035899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1036899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1037d0d4cfc2SHong Zhang 1038a30f8f8cSSatish Balay PetscFunctionBegin; 1039d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1040d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1041d0d4cfc2SHong Zhang 1042d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1043d0d4cfc2SHong Zhang /* 1044d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1045d0d4cfc2SHong Zhang */ 1046d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1047d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1048d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1049d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1050d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1051d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1052d0d4cfc2SHong Zhang } 1053d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1054d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang 1057d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1058d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1059d0d4cfc2SHong Zhang 1060d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1061d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1062d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1063d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1064d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1065d0d4cfc2SHong Zhang nztot = nzA + nzB; 1066d0d4cfc2SHong Zhang 1067d0d4cfc2SHong Zhang cmap = mat->garray; 1068d0d4cfc2SHong Zhang if (v || idx) { 1069d0d4cfc2SHong Zhang if (nztot) { 1070d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1071d0d4cfc2SHong Zhang PetscInt imark = -1; 1072d0d4cfc2SHong Zhang if (v) { 1073d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1074d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1075d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1076d0d4cfc2SHong Zhang else break; 1077d0d4cfc2SHong Zhang } 1078d0d4cfc2SHong Zhang imark = i; 1079d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1080d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1081d0d4cfc2SHong Zhang } 1082d0d4cfc2SHong Zhang if (idx) { 1083d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1084d0d4cfc2SHong Zhang if (imark > -1) { 1085d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1086d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1087d0d4cfc2SHong Zhang } 1088d0d4cfc2SHong Zhang } else { 1089d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1090d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1091d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1092d0d4cfc2SHong Zhang else break; 1093d0d4cfc2SHong Zhang } 1094d0d4cfc2SHong Zhang imark = i; 1095d0d4cfc2SHong Zhang } 1096d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1097d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1098d0d4cfc2SHong Zhang } 1099d0d4cfc2SHong Zhang } else { 1100d0d4cfc2SHong Zhang if (idx) *idx = 0; 1101d0d4cfc2SHong Zhang if (v) *v = 0; 1102d0d4cfc2SHong Zhang } 1103d0d4cfc2SHong Zhang } 1104d0d4cfc2SHong Zhang *nz = nztot; 1105d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1106d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1107a30f8f8cSSatish Balay PetscFunctionReturn(0); 1108a30f8f8cSSatish Balay } 1109a30f8f8cSSatish Balay 11104a2ae208SSatish Balay #undef __FUNCT__ 11114a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11121302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1113a30f8f8cSSatish Balay { 1114a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1115a30f8f8cSSatish Balay 1116a30f8f8cSSatish Balay PetscFunctionBegin; 1117abc0a331SBarry Smith if (!baij->getrowactive) { 1118abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1119a30f8f8cSSatish Balay } 1120a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1121a30f8f8cSSatish Balay PetscFunctionReturn(0); 1122a30f8f8cSSatish Balay } 1123a30f8f8cSSatish Balay 11244a2ae208SSatish Balay #undef __FUNCT__ 1125d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1126d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1127d0d4cfc2SHong Zhang { 1128d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1129d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1130d0d4cfc2SHong Zhang 1131d0d4cfc2SHong Zhang PetscFunctionBegin; 1132d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1133d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1134d0d4cfc2SHong Zhang } 1135d0d4cfc2SHong Zhang #undef __FUNCT__ 1136d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1137d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1138d0d4cfc2SHong Zhang { 1139d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1140d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1141d0d4cfc2SHong Zhang 1142d0d4cfc2SHong Zhang PetscFunctionBegin; 1143d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1144d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1145d0d4cfc2SHong Zhang } 1146d0d4cfc2SHong Zhang 1147d0d4cfc2SHong Zhang #undef __FUNCT__ 114899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 114999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 115099cafbc1SBarry Smith { 115199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 115299cafbc1SBarry Smith PetscErrorCode ierr; 115399cafbc1SBarry Smith 115499cafbc1SBarry Smith PetscFunctionBegin; 115599cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 115699cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 115799cafbc1SBarry Smith PetscFunctionReturn(0); 115899cafbc1SBarry Smith } 115999cafbc1SBarry Smith 116099cafbc1SBarry Smith #undef __FUNCT__ 116199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 116299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 116399cafbc1SBarry Smith { 116499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 116599cafbc1SBarry Smith PetscErrorCode ierr; 116699cafbc1SBarry Smith 116799cafbc1SBarry Smith PetscFunctionBegin; 116899cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 116999cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 117099cafbc1SBarry Smith PetscFunctionReturn(0); 117199cafbc1SBarry Smith } 117299cafbc1SBarry Smith 117399cafbc1SBarry Smith #undef __FUNCT__ 11744a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1175dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1176a30f8f8cSSatish Balay { 1177a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1178dfbe8321SBarry Smith PetscErrorCode ierr; 1179a30f8f8cSSatish Balay 1180a30f8f8cSSatish Balay PetscFunctionBegin; 1181a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1182a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1183a30f8f8cSSatish Balay PetscFunctionReturn(0); 1184a30f8f8cSSatish Balay } 1185a30f8f8cSSatish Balay 11864a2ae208SSatish Balay #undef __FUNCT__ 11874a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1188dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1189a30f8f8cSSatish Balay { 1190a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1191a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1192dfbe8321SBarry Smith PetscErrorCode ierr; 1193a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1194a30f8f8cSSatish Balay 1195a30f8f8cSSatish Balay PetscFunctionBegin; 1196899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 1197a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1198a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1199a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1200a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1201a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1202a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1203a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1204a30f8f8cSSatish Balay info->nz_used = isend[0]; 1205a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1206a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1207a30f8f8cSSatish Balay info->memory = isend[3]; 1208a30f8f8cSSatish Balay info->mallocs = isend[4]; 1209a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1210d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1212a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1213a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1214a30f8f8cSSatish Balay info->memory = irecv[3]; 1215a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1216a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1217d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1218a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1219a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1220a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1221a30f8f8cSSatish Balay info->memory = irecv[3]; 1222a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1223a30f8f8cSSatish Balay } else { 122477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1225a30f8f8cSSatish Balay } 1226899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1227899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1228899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1229899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 1230a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1231a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1232a30f8f8cSSatish Balay info->factor_mallocs = 0; 1233a30f8f8cSSatish Balay PetscFunctionReturn(0); 1234a30f8f8cSSatish Balay } 1235a30f8f8cSSatish Balay 12364a2ae208SSatish Balay #undef __FUNCT__ 12374a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1238*4e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1239a30f8f8cSSatish Balay { 1240a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1241d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1242dfbe8321SBarry Smith PetscErrorCode ierr; 1243a30f8f8cSSatish Balay 1244a30f8f8cSSatish Balay PetscFunctionBegin; 1245e98b92d7SKris Buschelman switch (op) { 1246e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1247e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1248e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1249e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1250e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1251*4e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1252*4e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1253e98b92d7SKris Buschelman break; 1254e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1255*4e0d8c25SBarry Smith a->roworiented = flg; 1256*4e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1257*4e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1258e98b92d7SKris Buschelman break; 1259e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1260*4e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1261290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1262e98b92d7SKris Buschelman break; 1263e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1264*4e0d8c25SBarry Smith a->donotstash = flg; 1265e98b92d7SKris Buschelman break; 1266e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1267*4e0d8c25SBarry Smith a->ht_flag = flg; 1268e98b92d7SKris Buschelman break; 12699a4540c5SBarry Smith case MAT_HERMITIAN: 1270*4e0d8c25SBarry Smith if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 127177e54ba9SKris Buschelman case MAT_SYMMETRIC: 127277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12739a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1274*4e0d8c25SBarry Smith if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 1275290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 127677e54ba9SKris Buschelman break; 1277d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 1278*4e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1279d0d4cfc2SHong Zhang break; 1280d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 1281*4e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1282d0d4cfc2SHong Zhang break; 1283d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 1284*4e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1285d0d4cfc2SHong Zhang break; 1286e98b92d7SKris Buschelman default: 1287ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1288a30f8f8cSSatish Balay } 1289a30f8f8cSSatish Balay PetscFunctionReturn(0); 1290a30f8f8cSSatish Balay } 1291a30f8f8cSSatish Balay 12924a2ae208SSatish Balay #undef __FUNCT__ 12938115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1294dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1295a30f8f8cSSatish Balay { 1296dfbe8321SBarry Smith PetscErrorCode ierr; 1297a30f8f8cSSatish Balay PetscFunctionBegin; 1298999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 12998115998fSBarry Smith PetscFunctionReturn(0); 1300a30f8f8cSSatish Balay } 1301a30f8f8cSSatish Balay 13024a2ae208SSatish Balay #undef __FUNCT__ 13034a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1304dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1305a30f8f8cSSatish Balay { 1306a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1307a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1308dfbe8321SBarry Smith PetscErrorCode ierr; 13095e90f9d9SHong Zhang PetscInt nv,m,n; 1310b3bf805bSHong Zhang PetscTruth flg; 1311a30f8f8cSSatish Balay 1312a30f8f8cSSatish Balay PetscFunctionBegin; 1313a30f8f8cSSatish Balay if (ll != rr){ 1314b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1315b3bf805bSHong Zhang if (!flg) 131629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1317a30f8f8cSSatish Balay } 1318b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1319b3bf805bSHong Zhang 13205e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13215e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1322b3bf805bSHong Zhang 13235e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13245e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13255e90f9d9SHong Zhang 1326ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13275e90f9d9SHong Zhang 13285e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1329a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13305e90f9d9SHong Zhang 13315e90f9d9SHong Zhang /* scale the diagonal part */ 1332a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1333a30f8f8cSSatish Balay 13345e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1335ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1336a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1337a30f8f8cSSatish Balay PetscFunctionReturn(0); 1338a30f8f8cSSatish Balay } 1339a30f8f8cSSatish Balay 13404a2ae208SSatish Balay #undef __FUNCT__ 13414a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1342dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1343a30f8f8cSSatish Balay { 1344f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1345dfbe8321SBarry Smith PetscErrorCode ierr; 1346a30f8f8cSSatish Balay 1347a30f8f8cSSatish Balay PetscFunctionBegin; 1348a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1349a30f8f8cSSatish Balay PetscFunctionReturn(0); 1350a30f8f8cSSatish Balay } 1351a30f8f8cSSatish Balay 13526849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1353a30f8f8cSSatish Balay 13544a2ae208SSatish Balay #undef __FUNCT__ 13554a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1356dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1357a30f8f8cSSatish Balay { 1358a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1359a30f8f8cSSatish Balay Mat a,b,c,d; 1360a30f8f8cSSatish Balay PetscTruth flg; 1361dfbe8321SBarry Smith PetscErrorCode ierr; 1362a30f8f8cSSatish Balay 1363a30f8f8cSSatish Balay PetscFunctionBegin; 1364a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1365a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1366a30f8f8cSSatish Balay 1367a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1368abc0a331SBarry Smith if (flg) { 1369a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1370a30f8f8cSSatish Balay } 1371a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1372a30f8f8cSSatish Balay PetscFunctionReturn(0); 1373a30f8f8cSSatish Balay } 1374a30f8f8cSSatish Balay 13754a2ae208SSatish Balay #undef __FUNCT__ 13763c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13773c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13783c896bc6SHong Zhang { 13793c896bc6SHong Zhang PetscErrorCode ierr; 13803c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13813c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13823c896bc6SHong Zhang 13833c896bc6SHong Zhang PetscFunctionBegin; 13843c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13853c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1386d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13873c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1388d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13893c896bc6SHong Zhang } else { 13903c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13913c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13923c896bc6SHong Zhang } 13933c896bc6SHong Zhang PetscFunctionReturn(0); 13943c896bc6SHong Zhang } 13953c896bc6SHong Zhang 13963c896bc6SHong Zhang #undef __FUNCT__ 13974a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1398dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1399273d9f13SBarry Smith { 1400dfbe8321SBarry Smith PetscErrorCode ierr; 1401273d9f13SBarry Smith 1402273d9f13SBarry Smith PetscFunctionBegin; 14037edd0491SSatish Balay ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1404273d9f13SBarry Smith PetscFunctionReturn(0); 1405273d9f13SBarry Smith } 1406a5e6ed63SBarry Smith 14074fe895cdSHong Zhang #include "petscblaslapack.h" 14084fe895cdSHong Zhang #undef __FUNCT__ 14094fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14104fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14114fe895cdSHong Zhang { 14124fe895cdSHong Zhang PetscErrorCode ierr; 14134fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14144fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14154fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14164fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14174fe895cdSHong Zhang 14184fe895cdSHong Zhang PetscFunctionBegin; 14194fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14204fe895cdSHong Zhang PetscScalar alpha = a; 14214fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14224fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14234fe895cdSHong Zhang bnz = (PetscBLASInt)xa->nz; 14244fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14254fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14264fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14274fe895cdSHong Zhang bnz = (PetscBLASInt)xb->nz; 14284fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14294fe895cdSHong Zhang } else { 1430d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14314fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1432d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14334fe895cdSHong Zhang } 14344fe895cdSHong Zhang PetscFunctionReturn(0); 14354fe895cdSHong Zhang } 14364fe895cdSHong Zhang 1437a5e6ed63SBarry Smith #undef __FUNCT__ 1438a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14391302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1440a5e6ed63SBarry Smith { 14416849ba73SBarry Smith PetscErrorCode ierr; 14421302d50aSBarry Smith PetscInt i; 1443a5e6ed63SBarry Smith PetscTruth flg; 1444a5e6ed63SBarry Smith 14456849ba73SBarry Smith PetscFunctionBegin; 1446a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1447a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1448a5e6ed63SBarry Smith if (!flg) { 14491302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1450a5e6ed63SBarry Smith } 1451a5e6ed63SBarry Smith } 1452a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1453a5e6ed63SBarry Smith PetscFunctionReturn(0); 1454a5e6ed63SBarry Smith } 1455a5e6ed63SBarry Smith 1456a5e6ed63SBarry Smith 1457a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1458a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1459a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1460a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1461a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1462a9d4b620SHong Zhang MatMult_MPISBAIJ, 146397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1464431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1465431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1466a30f8f8cSSatish Balay 0, 1467a30f8f8cSSatish Balay 0, 1468a30f8f8cSSatish Balay 0, 146997304618SKris Buschelman /*10*/ 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 14722798e883SHong Zhang MatRelax_MPISBAIJ, 1473a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 147497304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1475a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1476a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1477a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1478a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 147997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1480a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1483a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1484dcf5cc72SBarry Smith /*25*/ 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay 0, 1488a30f8f8cSSatish Balay 0, 148997304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1490b5df2d14SHong Zhang 0, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 1493a30f8f8cSSatish Balay 0, 149497304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 14994fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1500a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1501d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1502a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15033c896bc6SHong Zhang MatCopy_MPISBAIJ, 15048c07d4e3SBarry Smith /*45*/ 0, 1505a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509521d7252SBarry Smith /*50*/ 0, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay 0, 1513a30f8f8cSSatish Balay 0, 151497304618SKris Buschelman /*55*/ 0, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1517a30f8f8cSSatish Balay 0, 1518a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 151997304618SKris Buschelman /*60*/ 0, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay 0, 1522357abbc8SBarry Smith 0, 152324d5174aSHong Zhang 0, 152497304618SKris Buschelman /*65*/ 0, 152524d5174aSHong Zhang 0, 152624d5174aSHong Zhang 0, 152724d5174aSHong Zhang 0, 152824d5174aSHong Zhang 0, 1529985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPISBAIJ, 153024d5174aSHong Zhang 0, 153197304618SKris Buschelman 0, 153297304618SKris Buschelman 0, 153397304618SKris Buschelman 0, 153497304618SKris Buschelman /*75*/ 0, 153597304618SKris Buschelman 0, 153697304618SKris Buschelman 0, 153797304618SKris Buschelman 0, 153897304618SKris Buschelman 0, 153997304618SKris Buschelman /*80*/ 0, 154097304618SKris Buschelman 0, 154197304618SKris Buschelman 0, 154297304618SKris Buschelman 0, 1543865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1544865e5f61SKris Buschelman /*85*/ 0, 1545865e5f61SKris Buschelman 0, 1546865e5f61SKris Buschelman 0, 1547865e5f61SKris Buschelman 0, 1548865e5f61SKris Buschelman 0, 1549865e5f61SKris Buschelman /*90*/ 0, 1550865e5f61SKris Buschelman 0, 1551865e5f61SKris Buschelman 0, 1552865e5f61SKris Buschelman 0, 1553865e5f61SKris Buschelman 0, 1554865e5f61SKris Buschelman /*95*/ 0, 1555865e5f61SKris Buschelman 0, 1556865e5f61SKris Buschelman 0, 155799cafbc1SBarry Smith 0, 155899cafbc1SBarry Smith 0, 155999cafbc1SBarry Smith /*100*/0, 156099cafbc1SBarry Smith 0, 156199cafbc1SBarry Smith 0, 156299cafbc1SBarry Smith 0, 156399cafbc1SBarry Smith 0, 156499cafbc1SBarry Smith /*105*/0, 156599cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1566d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1567d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1568d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 156999cafbc1SBarry Smith }; 1570a30f8f8cSSatish Balay 1571a30f8f8cSSatish Balay 1572a30f8f8cSSatish Balay EXTERN_C_BEGIN 15734a2ae208SSatish Balay #undef __FUNCT__ 15744a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1575be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1576a30f8f8cSSatish Balay { 1577a30f8f8cSSatish Balay PetscFunctionBegin; 1578a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1579a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1580a30f8f8cSSatish Balay PetscFunctionReturn(0); 1581a30f8f8cSSatish Balay } 1582a30f8f8cSSatish Balay EXTERN_C_END 1583a30f8f8cSSatish Balay 1584273d9f13SBarry Smith EXTERN_C_BEGIN 15854a2ae208SSatish Balay #undef __FUNCT__ 1586a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1587be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1588a23d5eceSKris Buschelman { 1589a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1590dfbe8321SBarry Smith PetscErrorCode ierr; 15911302d50aSBarry Smith PetscInt i,mbs,Mbs; 1592a23d5eceSKris Buschelman 1593a23d5eceSKris Buschelman PetscFunctionBegin; 159477925062SSatish Balay ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 15958c07d4e3SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 15968c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1597a23d5eceSKris Buschelman 1598a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1599a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1600a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 160177431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 160277431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1603899cda47SBarry Smith 1604899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 16056148ca0dSBarry Smith ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr); 16066148ca0dSBarry Smith ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr); 1607899cda47SBarry Smith 1608a23d5eceSKris Buschelman if (d_nnz) { 1609899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 161077431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1611a23d5eceSKris Buschelman } 1612a23d5eceSKris Buschelman } 1613a23d5eceSKris Buschelman if (o_nnz) { 1614899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 161577431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1616a23d5eceSKris Buschelman } 1617a23d5eceSKris Buschelman } 1618a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1619a23d5eceSKris Buschelman 1620a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1621899cda47SBarry Smith mbs = B->rmap.n/bs; 1622899cda47SBarry Smith Mbs = B->rmap.N/bs; 1623899cda47SBarry Smith if (mbs*bs != B->rmap.n) { 1624899cda47SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs); 1625a23d5eceSKris Buschelman } 1626a23d5eceSKris Buschelman 1627899cda47SBarry Smith B->rmap.bs = bs; 1628a23d5eceSKris Buschelman b->bs2 = bs*bs; 1629a23d5eceSKris Buschelman b->mbs = mbs; 1630a23d5eceSKris Buschelman b->nbs = mbs; 1631a23d5eceSKris Buschelman b->Mbs = Mbs; 1632a23d5eceSKris Buschelman b->Nbs = Mbs; 1633a23d5eceSKris Buschelman 1634a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1635899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 1636a23d5eceSKris Buschelman } 1637899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 1638899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 1639a23d5eceSKris Buschelman 1640899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 1641899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 1642a23d5eceSKris Buschelman 1643f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1644899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 16459c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1646c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 164752e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16489c097c71SKris Buschelman 1649f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1650899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 16514aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1652589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 165352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1654a23d5eceSKris Buschelman 1655a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1656a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1657a23d5eceSKris Buschelman 1658a23d5eceSKris Buschelman PetscFunctionReturn(0); 1659a23d5eceSKris Buschelman } 1660a23d5eceSKris Buschelman EXTERN_C_END 1661a23d5eceSKris Buschelman 16620bad9183SKris Buschelman /*MC 1663fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16640bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16650bad9183SKris Buschelman 16660bad9183SKris Buschelman Options Database Keys: 16670bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16680bad9183SKris Buschelman 16690bad9183SKris Buschelman Level: beginner 16700bad9183SKris Buschelman 16710bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16720bad9183SKris Buschelman M*/ 16730bad9183SKris Buschelman 1674a23d5eceSKris Buschelman EXTERN_C_BEGIN 1675a23d5eceSKris Buschelman #undef __FUNCT__ 16764a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1677be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1678b5df2d14SHong Zhang { 1679b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1680dfbe8321SBarry Smith PetscErrorCode ierr; 1681b5df2d14SHong Zhang PetscTruth flg; 1682b5df2d14SHong Zhang 1683b5df2d14SHong Zhang PetscFunctionBegin; 1684b5df2d14SHong Zhang 168538f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1686b0a32e0cSBarry Smith B->data = (void*)b; 1687b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1688b5df2d14SHong Zhang 1689b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1690b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1691b5df2d14SHong Zhang B->mapping = 0; 1692b5df2d14SHong Zhang B->factor = 0; 1693b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1694b5df2d14SHong Zhang 1695b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1696b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1697b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1698b5df2d14SHong Zhang 1699b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1700899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1701b5df2d14SHong Zhang 1702b5df2d14SHong Zhang /* build cache for off array entries formed */ 1703b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1704b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1705b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1706b5df2d14SHong Zhang b->garray = PETSC_NULL; 1707b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1708b5df2d14SHong Zhang 1709f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1710b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 171164a35ccbSBarry Smith b->setvalueslen = 0; 1712b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1713b5df2d14SHong Zhang #endif 1714b5df2d14SHong Zhang 1715b5df2d14SHong Zhang /* stuff used in block assembly */ 1716b5df2d14SHong Zhang b->barray = 0; 1717b5df2d14SHong Zhang 1718b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1719b5df2d14SHong Zhang b->lvec = 0; 1720b5df2d14SHong Zhang b->Mvctx = 0; 172140781036SHong Zhang b->slvec0 = 0; 172240781036SHong Zhang b->slvec0b = 0; 172340781036SHong Zhang b->slvec1 = 0; 172440781036SHong Zhang b->slvec1a = 0; 172540781036SHong Zhang b->slvec1b = 0; 172640781036SHong Zhang b->sMvctx = 0; 1727b5df2d14SHong Zhang 1728b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1729b5df2d14SHong Zhang b->rowindices = 0; 1730b5df2d14SHong Zhang b->rowvalues = 0; 1731b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1732b5df2d14SHong Zhang 1733b5df2d14SHong Zhang /* hash table stuff */ 1734b5df2d14SHong Zhang b->ht = 0; 1735b5df2d14SHong Zhang b->hd = 0; 1736b5df2d14SHong Zhang b->ht_size = 0; 1737b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1738b5df2d14SHong Zhang b->ht_fact = 0; 1739b5df2d14SHong Zhang b->ht_total_ct = 0; 1740b5df2d14SHong Zhang b->ht_insert_ct = 0; 1741b5df2d14SHong Zhang 174259ffdab8SBarry Smith b->in_loc = 0; 174359ffdab8SBarry Smith b->v_loc = 0; 174459ffdab8SBarry Smith b->n_loc = 0; 174577925062SSatish Balay ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17468c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1747b5df2d14SHong Zhang if (flg) { 1748f6275e2eSBarry Smith PetscReal fact = 1.39; 1749*4e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17508c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1751b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1752b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1753ae15b995SBarry Smith ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1754b5df2d14SHong Zhang } 17558c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17568c07d4e3SBarry Smith 1757b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1758b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1759b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1760b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1761b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1762b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1763b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1764b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1765b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1766a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1767a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1768a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 176923ce1328SBarry Smith B->symmetric = PETSC_TRUE; 177023ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 177123ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 177223ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 177317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1774b5df2d14SHong Zhang PetscFunctionReturn(0); 1775b5df2d14SHong Zhang } 1776273d9f13SBarry Smith EXTERN_C_END 1777b5df2d14SHong Zhang 1778209238afSKris Buschelman /*MC 1779002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1780209238afSKris Buschelman 1781209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1782209238afSKris Buschelman and MATMPISBAIJ otherwise. 1783209238afSKris Buschelman 1784209238afSKris Buschelman Options Database Keys: 1785209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1786209238afSKris Buschelman 1787209238afSKris Buschelman Level: beginner 1788209238afSKris Buschelman 1789209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1790209238afSKris Buschelman M*/ 1791209238afSKris Buschelman 1792209238afSKris Buschelman EXTERN_C_BEGIN 1793209238afSKris Buschelman #undef __FUNCT__ 1794209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1795be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1796dfbe8321SBarry Smith { 17976849ba73SBarry Smith PetscErrorCode ierr; 17981302d50aSBarry Smith PetscMPIInt size; 1799209238afSKris Buschelman 1800209238afSKris Buschelman PetscFunctionBegin; 1801209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1802209238afSKris Buschelman if (size == 1) { 1803209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1804209238afSKris Buschelman } else { 1805209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1806209238afSKris Buschelman } 1807209238afSKris Buschelman PetscFunctionReturn(0); 1808209238afSKris Buschelman } 1809209238afSKris Buschelman EXTERN_C_END 1810209238afSKris Buschelman 18114a2ae208SSatish Balay #undef __FUNCT__ 18124a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1813b5df2d14SHong Zhang /*@C 1814b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1815b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1816b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1817b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1818b5df2d14SHong Zhang 1819b5df2d14SHong Zhang Collective on Mat 1820b5df2d14SHong Zhang 1821b5df2d14SHong Zhang Input Parameters: 1822b5df2d14SHong Zhang + A - the matrix 1823b5df2d14SHong Zhang . bs - size of blockk 1824b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1825b5df2d14SHong Zhang submatrix (same for all local rows) 1826b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18276d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18286d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18296d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1830b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1831b5df2d14SHong Zhang submatrix (same for all local rows). 1832b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1833b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1834b5df2d14SHong Zhang each block row) or PETSC_NULL. 1835b5df2d14SHong Zhang 1836b5df2d14SHong Zhang 1837b5df2d14SHong Zhang Options Database Keys: 1838b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1839b5df2d14SHong Zhang block calculations (much slower) 1840b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1841b5df2d14SHong Zhang 1842b5df2d14SHong Zhang Notes: 1843b5df2d14SHong Zhang 1844b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1845b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1846b5df2d14SHong Zhang 184749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 184849a6f317SBarry Smith 1849b5df2d14SHong Zhang Storage Information: 1850b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1851b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1852b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1853b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1854b5df2d14SHong Zhang 1855b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1856b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1857b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1858b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1859b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1860b5df2d14SHong Zhang 1861b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1862b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang .vb 1865b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1866b5df2d14SHong Zhang ------------------- 1867b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1868b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1869b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1870b5df2d14SHong Zhang ------------------- 1871b5df2d14SHong Zhang .ve 1872b5df2d14SHong Zhang 1873b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1874b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18756d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18766d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1877b5df2d14SHong Zhang 18786d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18796d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1880b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1881b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1882b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1883b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1884b5df2d14SHong Zhang matrices. 1885b5df2d14SHong Zhang 1886b5df2d14SHong Zhang Level: intermediate 1887b5df2d14SHong Zhang 1888b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1889b5df2d14SHong Zhang 1890b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1891b5df2d14SHong Zhang @*/ 1892be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1893b5df2d14SHong Zhang { 18941302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1895b5df2d14SHong Zhang 1896b5df2d14SHong Zhang PetscFunctionBegin; 1897a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1898a23d5eceSKris Buschelman if (f) { 1899a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1900b5df2d14SHong Zhang } 1901b5df2d14SHong Zhang PetscFunctionReturn(0); 1902b5df2d14SHong Zhang } 1903b5df2d14SHong Zhang 19044a2ae208SSatish Balay #undef __FUNCT__ 19054a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1906a30f8f8cSSatish Balay /*@C 1907a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1908a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1909a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1910a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1911a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1912a30f8f8cSSatish Balay 1913a30f8f8cSSatish Balay Collective on MPI_Comm 1914a30f8f8cSSatish Balay 1915a30f8f8cSSatish Balay Input Parameters: 1916a30f8f8cSSatish Balay + comm - MPI communicator 1917a30f8f8cSSatish Balay . bs - size of blockk 1918a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1919a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1920a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1921a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1922a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1923a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1924a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1925a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1926a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1927a30f8f8cSSatish Balay submatrix (same for all local rows) 1928a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19296d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19306d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19316d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1932a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1933a30f8f8cSSatish Balay submatrix (same for all local rows). 1934a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1935a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1936a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1937a30f8f8cSSatish Balay 1938a30f8f8cSSatish Balay Output Parameter: 1939a30f8f8cSSatish Balay . A - the matrix 1940a30f8f8cSSatish Balay 1941a30f8f8cSSatish Balay Options Database Keys: 1942a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1943a30f8f8cSSatish Balay block calculations (much slower) 1944a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1945a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1946a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1947a30f8f8cSSatish Balay 1948a30f8f8cSSatish Balay Notes: 1949d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19506d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1951d1be2dadSMatthew Knepley 1952a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1953a30f8f8cSSatish Balay (possibly both). 1954a30f8f8cSSatish Balay 1955a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1956a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1957a30f8f8cSSatish Balay 195849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 195949a6f317SBarry Smith 1960a30f8f8cSSatish Balay Storage Information: 1961a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1962a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1963a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1964a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1965a30f8f8cSSatish Balay 1966a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1967a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1968a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1969a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1970a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1971a30f8f8cSSatish Balay 1972a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1973a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1974a30f8f8cSSatish Balay 1975a30f8f8cSSatish Balay .vb 1976a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1977a30f8f8cSSatish Balay ------------------- 1978a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1979a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1980a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1981a30f8f8cSSatish Balay ------------------- 1982a30f8f8cSSatish Balay .ve 1983a30f8f8cSSatish Balay 1984a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1985a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19866d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19876d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1988a30f8f8cSSatish Balay 19896d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19906d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1991a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1992a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1993a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1994a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1995a30f8f8cSSatish Balay matrices. 1996a30f8f8cSSatish Balay 1997a30f8f8cSSatish Balay Level: intermediate 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2000a30f8f8cSSatish Balay 2001a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2002a30f8f8cSSatish Balay @*/ 2003a30f8f8cSSatish Balay 2004be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2005a30f8f8cSSatish Balay { 20066849ba73SBarry Smith PetscErrorCode ierr; 20071302d50aSBarry Smith PetscMPIInt size; 2008a30f8f8cSSatish Balay 2009a30f8f8cSSatish Balay PetscFunctionBegin; 2010f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2011f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2012273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2013273d9f13SBarry Smith if (size > 1) { 2014b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2015b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2016273d9f13SBarry Smith } else { 2017273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2018273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2019273d9f13SBarry Smith } 2020a30f8f8cSSatish Balay PetscFunctionReturn(0); 2021a30f8f8cSSatish Balay } 2022a30f8f8cSSatish Balay 2023a30f8f8cSSatish Balay 20244a2ae208SSatish Balay #undef __FUNCT__ 20254a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20266849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2027a30f8f8cSSatish Balay { 2028a30f8f8cSSatish Balay Mat mat; 2029a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2030dfbe8321SBarry Smith PetscErrorCode ierr; 2031899cda47SBarry Smith PetscInt len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs; 2032387bc808SHong Zhang PetscScalar *array; 2033a30f8f8cSSatish Balay 2034a30f8f8cSSatish Balay PetscFunctionBegin; 2035a30f8f8cSSatish Balay *newmat = 0; 2036f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2037899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 2038be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20391d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2040899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 2041899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2042e1b6402fSHong Zhang 204382327fa8SHong Zhang mat->factor = matin->factor; 2044273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 204582327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20467fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20477fff6886SHong Zhang 2048b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2049a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2050a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2051a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2052a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2053a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2054a30f8f8cSSatish Balay 2055899cda47SBarry Smith 2056a30f8f8cSSatish Balay a->size = oldmat->size; 2057a30f8f8cSSatish Balay a->rank = oldmat->rank; 2058a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2059a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2060a30f8f8cSSatish Balay a->rowindices = 0; 2061a30f8f8cSSatish Balay a->rowvalues = 0; 2062a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2063a30f8f8cSSatish Balay a->barray = 0; 2064899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2065899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2066899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2067899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2068a30f8f8cSSatish Balay 2069a30f8f8cSSatish Balay /* hash table stuff */ 2070a30f8f8cSSatish Balay a->ht = 0; 2071a30f8f8cSSatish Balay a->hd = 0; 2072a30f8f8cSSatish Balay a->ht_size = 0; 2073a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2074a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2075a30f8f8cSSatish Balay a->ht_total_ct = 0; 2076a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2077a30f8f8cSSatish Balay 2078899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2079a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2080899cda47SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 2081a30f8f8cSSatish Balay if (oldmat->colmap) { 2082a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2083a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2084a30f8f8cSSatish Balay #else 20851302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 208652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20871302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2088a30f8f8cSSatish Balay #endif 2089a30f8f8cSSatish Balay } else a->colmap = 0; 2090387bc808SHong Zhang 2091a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20921302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 209352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 20941302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2095a30f8f8cSSatish Balay } else a->garray = 0; 2096a30f8f8cSSatish Balay 2097a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 209852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2099a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 210052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 210182327fa8SHong Zhang 210282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 210352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 210482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 210552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2106387bc808SHong Zhang 2107387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21081ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2109387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2110387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21111ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21121ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2113387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21141ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 211552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 211652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 211752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 211852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 211952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2120387bc808SHong Zhang 2121387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2122387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2123387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 212452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 212582327fa8SHong Zhang 2126a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 212752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2128a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 212952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2130b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2131a30f8f8cSSatish Balay *newmat = mat; 2132a30f8f8cSSatish Balay PetscFunctionReturn(0); 2133a30f8f8cSSatish Balay } 2134a30f8f8cSSatish Balay 2135a30f8f8cSSatish Balay #include "petscsys.h" 2136a30f8f8cSSatish Balay 21374a2ae208SSatish Balay #undef __FUNCT__ 21384a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2139f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2140a30f8f8cSSatish Balay { 2141a30f8f8cSSatish Balay Mat A; 21426849ba73SBarry Smith PetscErrorCode ierr; 214313f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 214487828ca2SBarry Smith PetscScalar *vals,*buf; 2145a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2146a30f8f8cSSatish Balay MPI_Status status; 21472fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 214813f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21492fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21501302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21511302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21521302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 215313f74950SBarry Smith int fd; 2154a30f8f8cSSatish Balay 2155a30f8f8cSSatish Balay PetscFunctionBegin; 215677925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21578c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21588c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2159a30f8f8cSSatish Balay 2160a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2162a30f8f8cSSatish Balay if (!rank) { 2163b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2164a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2165552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2166a30f8f8cSSatish Balay if (header[3] < 0) { 216729bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2168a30f8f8cSSatish Balay } 2169a30f8f8cSSatish Balay } 2170a30f8f8cSSatish Balay 2171a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2173a30f8f8cSSatish Balay 217429bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2175a30f8f8cSSatish Balay 2176a30f8f8cSSatish Balay /* 2177a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2178a30f8f8cSSatish Balay divisible by the blocksize 2179a30f8f8cSSatish Balay */ 2180a30f8f8cSSatish Balay Mbs = M/bs; 2181a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2182a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2183a30f8f8cSSatish Balay else Mbs++; 2184a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2185ae15b995SBarry Smith ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2186a30f8f8cSSatish Balay } 2187a30f8f8cSSatish Balay 2188a30f8f8cSSatish Balay /* determine ownership of all rows */ 2189a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2190a30f8f8cSSatish Balay m = mbs*bs; 2191a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2192a30f8f8cSSatish Balay browners = rowners + size + 1; 2193a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay rowners[0] = 0; 2195a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2196a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2197a30f8f8cSSatish Balay rstart = rowners[rank]; 2198a30f8f8cSSatish Balay rend = rowners[rank+1]; 2199a30f8f8cSSatish Balay 2200a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22012fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2202a30f8f8cSSatish Balay if (!rank) { 22031302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2204a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2206a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2208a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2209a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay } else { 2211a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay } 2213a30f8f8cSSatish Balay 22140222edb1SHong Zhang if (!rank) { /* procs[0] */ 2215a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22161302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22171302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2218a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2219a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2220a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2221a30f8f8cSSatish Balay } 2222a30f8f8cSSatish Balay } 2223a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2224a30f8f8cSSatish Balay 2225a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2226a30f8f8cSSatish Balay maxnz = 0; 2227a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2228a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2229a30f8f8cSSatish Balay } 22301302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay 2232a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2233a30f8f8cSSatish Balay nz = procsnz[0]; 22341302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2235a30f8f8cSSatish Balay mycols = ibuf; 2236a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2237a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2238a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2239a30f8f8cSSatish Balay 2240a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2241a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2242a30f8f8cSSatish Balay nz = procsnz[i]; 2243a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2244a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2245a30f8f8cSSatish Balay } 2246a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2247a30f8f8cSSatish Balay if (size != 1) { 2248a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2249a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2250a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2251a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay } 2253a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22540222edb1SHong Zhang } else { /* procs[i], i>0 */ 2255a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2256a30f8f8cSSatish Balay nz = 0; 2257a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2258a30f8f8cSSatish Balay nz += locrowlens[i]; 2259a30f8f8cSSatish Balay } 22601302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2261a30f8f8cSSatish Balay mycols = ibuf; 2262a30f8f8cSSatish Balay /* receive message of column indices*/ 2263a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2264a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 226529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2266a30f8f8cSSatish Balay } 2267a30f8f8cSSatish Balay 2268a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22691302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2270a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22711302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22721302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2273a30f8f8cSSatish Balay masked1 = mask + Mbs; 2274a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2275a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2276a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2277a30f8f8cSSatish Balay dcount = 0; 2278a30f8f8cSSatish Balay odcount = 0; 2279a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2280a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2281a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22820222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2283a30f8f8cSSatish Balay if (!mask[tmp]) { 2284a30f8f8cSSatish Balay mask[tmp] = 1; 22850222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22860222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2287a30f8f8cSSatish Balay } 2288a30f8f8cSSatish Balay } 2289a30f8f8cSSatish Balay rowcount++; 2290a30f8f8cSSatish Balay } 2291a30f8f8cSSatish Balay 22920222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22930222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2294a30f8f8cSSatish Balay 2295a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2296a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2297a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2298a30f8f8cSSatish Balay } 2299a30f8f8cSSatish Balay 2300a30f8f8cSSatish Balay /* create our matrix */ 2301f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2302f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 230322191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 230422191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2305*4e0d8c25SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED,PETSC_TRUE);CHKERRQ(ierr); 2306a30f8f8cSSatish Balay 2307a30f8f8cSSatish Balay if (!rank) { 230887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2309a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2310a30f8f8cSSatish Balay nz = procsnz[0]; 2311a30f8f8cSSatish Balay vals = buf; 2312a30f8f8cSSatish Balay mycols = ibuf; 2313a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2314a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2315a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2316a30f8f8cSSatish Balay 2317a30f8f8cSSatish Balay /* insert into matrix */ 2318a30f8f8cSSatish Balay jj = rstart*bs; 2319a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23207e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2321a30f8f8cSSatish Balay mycols += locrowlens[i]; 2322a30f8f8cSSatish Balay vals += locrowlens[i]; 2323a30f8f8cSSatish Balay jj++; 2324a30f8f8cSSatish Balay } 23257e06b45fSHong Zhang 2326a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2327a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2328a30f8f8cSSatish Balay nz = procsnz[i]; 2329a30f8f8cSSatish Balay vals = buf; 2330a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2331a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2332a30f8f8cSSatish Balay } 2333a30f8f8cSSatish Balay /* the last proc */ 2334a30f8f8cSSatish Balay if (size != 1){ 2335a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2336a30f8f8cSSatish Balay vals = buf; 2337a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2338a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2339a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2340a30f8f8cSSatish Balay } 2341a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23427e06b45fSHong Zhang 2343a30f8f8cSSatish Balay } else { 2344a30f8f8cSSatish Balay /* receive numeric values */ 234587828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2346a30f8f8cSSatish Balay 2347a30f8f8cSSatish Balay /* receive message of values*/ 2348a30f8f8cSSatish Balay vals = buf; 2349a30f8f8cSSatish Balay mycols = ibuf; 2350a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2351a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 235229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2353a30f8f8cSSatish Balay 2354a30f8f8cSSatish Balay /* insert into matrix */ 2355a30f8f8cSSatish Balay jj = rstart*bs; 2356a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2357a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2358a30f8f8cSSatish Balay mycols += locrowlens[i]; 2359a30f8f8cSSatish Balay vals += locrowlens[i]; 2360a30f8f8cSSatish Balay jj++; 2361a30f8f8cSSatish Balay } 2362a30f8f8cSSatish Balay } 23637e06b45fSHong Zhang 2364a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2365a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2366a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2367a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2368a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2369a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2370a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 237222191285SKris Buschelman *newmat = A; 2373a30f8f8cSSatish Balay PetscFunctionReturn(0); 2374a30f8f8cSSatish Balay } 2375a30f8f8cSSatish Balay 23764a2ae208SSatish Balay #undef __FUNCT__ 23774a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2378dcf5cc72SBarry Smith /*XXXXX@ 2379a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2380a30f8f8cSSatish Balay 2381a30f8f8cSSatish Balay Input Parameters: 2382a30f8f8cSSatish Balay . mat - the matrix 2383a30f8f8cSSatish Balay . fact - factor 2384a30f8f8cSSatish Balay 2385a30f8f8cSSatish Balay Collective on Mat 2386a30f8f8cSSatish Balay 2387a30f8f8cSSatish Balay Level: advanced 2388a30f8f8cSSatish Balay 2389a30f8f8cSSatish Balay Notes: 2390a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2391a30f8f8cSSatish Balay 2392a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2393a30f8f8cSSatish Balay 2394a30f8f8cSSatish Balay .seealso: MatSetOption() 2395dcf5cc72SBarry Smith @XXXXX*/ 2396dcf5cc72SBarry Smith 239724d5174aSHong Zhang 23984a2ae208SSatish Balay #undef __FUNCT__ 2399985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2400985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 240124d5174aSHong Zhang { 240224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2403f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2404ca54ac64SHong Zhang PetscReal atmp; 240587828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2406dfbe8321SBarry Smith PetscErrorCode ierr; 24071302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24081302d50aSBarry Smith PetscMPIInt rank,size; 24091302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 241087828ca2SBarry Smith PetscScalar *va; 24118a1c53f2SBarry Smith MatScalar *ba; 2412f4c0e9e4SHong Zhang MPI_Status stat; 241324d5174aSHong Zhang 241424d5174aSHong Zhang PetscFunctionBegin; 2415985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2416985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24171ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2418f4c0e9e4SHong Zhang 241956faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 242056faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2421f4c0e9e4SHong Zhang 2422899cda47SBarry Smith bs = A->rmap.bs; 2423f4c0e9e4SHong Zhang mbs = a->mbs; 2424f4c0e9e4SHong Zhang Mbs = a->Mbs; 2425f4c0e9e4SHong Zhang ba = b->a; 2426f4c0e9e4SHong Zhang bi = b->i; 2427f4c0e9e4SHong Zhang bj = b->j; 2428f4c0e9e4SHong Zhang 2429f4c0e9e4SHong Zhang /* find ownerships */ 2430899cda47SBarry Smith rowners_bs = A->rmap.range; 2431f4c0e9e4SHong Zhang 2432f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 243382502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2434ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2435f4c0e9e4SHong Zhang 2436f4c0e9e4SHong Zhang /* row_max for B */ 2437b8475685SHong Zhang if (rank != size-1){ 2438f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2439f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2440f4c0e9e4SHong Zhang brow = bs*i; 2441f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2442f4c0e9e4SHong Zhang bcol = bs*(*bj); 2443f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2444ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 244504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2446f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2447f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2448ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2449ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2450f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2451f4c0e9e4SHong Zhang } 2452f4c0e9e4SHong Zhang } 2453f4c0e9e4SHong Zhang bj++; 2454f4c0e9e4SHong Zhang } 2455f4c0e9e4SHong Zhang } 2456f4c0e9e4SHong Zhang 2457f4c0e9e4SHong Zhang /* send values to its owners */ 2458f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2459f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2460ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 246156faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2462ca54ac64SHong Zhang } 2463f4c0e9e4SHong Zhang } 2464f4c0e9e4SHong Zhang 2465f4c0e9e4SHong Zhang /* receive values */ 2466ca54ac64SHong Zhang if (rank){ 2467f4c0e9e4SHong Zhang rvalues = work; 2468ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2469f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 247056faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2471f4c0e9e4SHong Zhang /* process values */ 2472f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2473ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2474f4c0e9e4SHong Zhang } 2475f4c0e9e4SHong Zhang } 2476ca54ac64SHong Zhang } 2477f4c0e9e4SHong Zhang 24781ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2479ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 248024d5174aSHong Zhang PetscFunctionReturn(0); 248124d5174aSHong Zhang } 24822798e883SHong Zhang 24832798e883SHong Zhang #undef __FUNCT__ 24842798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24851302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24862798e883SHong Zhang { 24872798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2488dfbe8321SBarry Smith PetscErrorCode ierr; 2489899cda47SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap.bs; 2490efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2491ffe4fb16SHong Zhang Vec bb1; 2492ffe4fb16SHong Zhang 2493ffe4fb16SHong Zhang PetscFunctionBegin; 249477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2495ffe4fb16SHong Zhang if (bs > 1) 2496ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2497ffe4fb16SHong Zhang 2498ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2499ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2500ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2501ffe4fb16SHong Zhang its--; 2502ffe4fb16SHong Zhang } 2503ffe4fb16SHong Zhang 2504ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2505ffe4fb16SHong Zhang while (its--){ 2506ffe4fb16SHong Zhang 2507ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2508ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2509ffe4fb16SHong Zhang 2510ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25111ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25121ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2513ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25141ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2515ffe4fb16SHong Zhang 2516efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2517ffe4fb16SHong Zhang 2518ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25191ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25201ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2521ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25221ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2523ffe4fb16SHong Zhang 2524ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25252dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2526ffe4fb16SHong Zhang 2527ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25281ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25291ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2530ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2531ffe4fb16SHong Zhang 2532ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2533ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2534ffe4fb16SHong Zhang 2535ffe4fb16SHong Zhang /* local diagonal sweep */ 2536ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2537ffe4fb16SHong Zhang } 2538ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2539ffe4fb16SHong Zhang } else { 2540ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2541ffe4fb16SHong Zhang } 2542ffe4fb16SHong Zhang PetscFunctionReturn(0); 2543ffe4fb16SHong Zhang } 2544ffe4fb16SHong Zhang 2545ffe4fb16SHong Zhang #undef __FUNCT__ 2546ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25471302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2548ffe4fb16SHong Zhang { 2549ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2550dfbe8321SBarry Smith PetscErrorCode ierr; 25512798e883SHong Zhang Vec lvec1,bb1; 25522798e883SHong Zhang 25532798e883SHong Zhang PetscFunctionBegin; 255477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2555899cda47SBarry Smith if (matin->rmap.bs > 1) 25562798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25572798e883SHong Zhang 2558c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25592798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2560bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25612798e883SHong Zhang its--; 25622798e883SHong Zhang } 25632798e883SHong Zhang 25642798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25652798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25662798e883SHong Zhang while (its--){ 2567ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25682798e883SHong Zhang 25692798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25702798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2571efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25722798e883SHong Zhang 2573ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25742798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2575ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25762798e883SHong Zhang 25772798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2578efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25792798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25802798e883SHong Zhang 2581ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25822798e883SHong Zhang 2583c14dc6b6SHong Zhang /* diagonal sweep */ 2584bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25852798e883SHong Zhang } 25862798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25872798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2588c14dc6b6SHong Zhang } else { 2589c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2590c14dc6b6SHong Zhang } 25912798e883SHong Zhang PetscFunctionReturn(0); 25922798e883SHong Zhang } 25932798e883SHong Zhang 2594