xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 4e0d8c253c5baa1c48327ddb2b78bf7a43f58497)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
101085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
103a30f8f8cSSatish Balay       N = nrow++ - 1;  \
104a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
105a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
106a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
107a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
108a30f8f8cSSatish Balay       } \
109a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
110a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
111a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
112a30f8f8cSSatish Balay       a_noinsert:; \
113a30f8f8cSSatish Balay     ailen[brow] = nrow; \
114a30f8f8cSSatish Balay }
115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
116a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
117a30f8f8cSSatish Balay { \
118a30f8f8cSSatish Balay     brow = row/bs;  \
119a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
120a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
121a30f8f8cSSatish Balay       bcol = col/bs; \
122a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
123a30f8f8cSSatish Balay       low = 0; high = nrow; \
124a30f8f8cSSatish Balay       while (high-low > 3) { \
125a30f8f8cSSatish Balay         t = (low+high)/2; \
126a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
127a30f8f8cSSatish Balay         else              low  = t; \
128a30f8f8cSSatish Balay       } \
129a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
130a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
131a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
132a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
133a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
134a30f8f8cSSatish Balay           else                    *bap  = value;  \
135a30f8f8cSSatish Balay           goto b_noinsert; \
136a30f8f8cSSatish Balay         } \
137a30f8f8cSSatish Balay       } \
138a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
139085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
140421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       b_noinsert:; \
151a30f8f8cSSatish Balay     bilen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #endif
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1564a2ae208SSatish Balay #undef __FUNCT__
1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
159a30f8f8cSSatish Balay {
160a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
161dfbe8321SBarry Smith   PetscErrorCode ierr;
1621302d50aSBarry Smith   PetscInt       i,N = m*n;
163a30f8f8cSSatish Balay   MatScalar      *vsingle;
164a30f8f8cSSatish Balay 
165a30f8f8cSSatish Balay   PetscFunctionBegin;
166a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
16705b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
16882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
169a30f8f8cSSatish Balay     b->setvalueslen  = N;
170a30f8f8cSSatish Balay   }
171a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
172a30f8f8cSSatish Balay 
173a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
174a30f8f8cSSatish Balay     vsingle[i] = v[i];
175a30f8f8cSSatish Balay   }
176a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
177a30f8f8cSSatish Balay   PetscFunctionReturn(0);
178a30f8f8cSSatish Balay }
179a30f8f8cSSatish Balay 
1804a2ae208SSatish Balay #undef __FUNCT__
1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
183a30f8f8cSSatish Balay {
184a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
185dfbe8321SBarry Smith   PetscErrorCode ierr;
1861302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
187a30f8f8cSSatish Balay   MatScalar      *vsingle;
188a30f8f8cSSatish Balay 
189a30f8f8cSSatish Balay   PetscFunctionBegin;
190a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
19105b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
19282502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
193a30f8f8cSSatish Balay     b->setvalueslen  = N;
194a30f8f8cSSatish Balay   }
195a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
196a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
197a30f8f8cSSatish Balay     vsingle[i] = v[i];
198a30f8f8cSSatish Balay   }
199a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
200a30f8f8cSSatish Balay   PetscFunctionReturn(0);
201a30f8f8cSSatish Balay }
202a30f8f8cSSatish Balay #endif
203a30f8f8cSSatish Balay 
204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
205a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
206a30f8f8cSSatish Balay */
2074a2ae208SSatish Balay #undef __FUNCT__
208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar"
2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
210a30f8f8cSSatish Balay {
211a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
212a30f8f8cSSatish Balay   MatScalar      value;
213b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
214dfbe8321SBarry Smith   PetscErrorCode ierr;
2151302d50aSBarry Smith   PetscInt       i,j,row,col;
216899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
217899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
218899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
219a30f8f8cSSatish Balay 
220a30f8f8cSSatish Balay   /* Some Variables required in the macro */
221a30f8f8cSSatish Balay   Mat            A = baij->A;
222a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2231302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
224a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
225a30f8f8cSSatish Balay 
226a30f8f8cSSatish Balay   Mat            B = baij->B;
227a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2281302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
229a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
230a30f8f8cSSatish Balay 
2311302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2321302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
233a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
234a30f8f8cSSatish Balay 
235a30f8f8cSSatish Balay   /* for stash */
236910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
237910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
238a30f8f8cSSatish Balay 
239a30f8f8cSSatish Balay   PetscFunctionBegin;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   if (!baij->donotstash){
24259ffdab8SBarry Smith     if (n > baij->n_loc) {
24359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
24459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
24559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
24659ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
24759ffdab8SBarry Smith       baij->n_loc = n;
24859ffdab8SBarry Smith     }
24959ffdab8SBarry Smith     in_loc = baij->in_loc;
25059ffdab8SBarry Smith     v_loc  = baij->v_loc;
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
254a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
256899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
257a30f8f8cSSatish Balay #endif
258a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
259a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
260a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
26101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
26201b2bd88SHong Zhang           if (a->ignore_ltriangular){
26301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
26401b2bd88SHong Zhang           } else {
265*4e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
26601b2bd88SHong Zhang           }
26701b2bd88SHong Zhang         }
268a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
269a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
270a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
271a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
272a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
273a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
274a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
275a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
277899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
278a30f8f8cSSatish Balay #endif
279a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
280a30f8f8cSSatish Balay           if (mat->was_assembled) {
281a30f8f8cSSatish Balay             if (!baij->colmap) {
282653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
283a30f8f8cSSatish Balay             }
284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
285a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28671730473SSatish Balay             col  = col - 1;
287a30f8f8cSSatish Balay #else
28871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
289a30f8f8cSSatish Balay #endif
290a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
291a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
292a30f8f8cSSatish Balay               col =  in[j];
293a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
294a30f8f8cSSatish Balay               B = baij->B;
295a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
296a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
297a30f8f8cSSatish Balay               ba=b->a;
29871730473SSatish Balay             } else col += in[j]%bs;
299a30f8f8cSSatish Balay           } else col = in[j];
300a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
301a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
302a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
303a30f8f8cSSatish Balay         }
304a30f8f8cSSatish Balay       }
305a30f8f8cSSatish Balay     } else {  /* off processor entry */
306a30f8f8cSSatish Balay       if (!baij->donotstash) {
307a30f8f8cSSatish Balay         n_loc = 0;
308a30f8f8cSSatish Balay         for (j=0; j<n; j++){
309f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
310a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
311a30f8f8cSSatish Balay           if (roworiented) {
312a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
313a30f8f8cSSatish Balay           } else {
314a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
315a30f8f8cSSatish Balay           }
316a30f8f8cSSatish Balay           n_loc++;
317a30f8f8cSSatish Balay         }
318a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
319a30f8f8cSSatish Balay       }
320a30f8f8cSSatish Balay     }
321a30f8f8cSSatish Balay   }
322a30f8f8cSSatish Balay   PetscFunctionReturn(0);
323a30f8f8cSSatish Balay }
324a30f8f8cSSatish Balay 
3254a2ae208SSatish Balay #undef __FUNCT__
326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
328a30f8f8cSSatish Balay {
3290880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
330f15d580aSBarry Smith   const MatScalar *value;
331f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3320880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
333dfbe8321SBarry Smith   PetscErrorCode  ierr;
334899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
335899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
336899cda47SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2;
3370880e062SHong Zhang 
338a30f8f8cSSatish Balay   PetscFunctionBegin;
3390880e062SHong Zhang   if(!barray) {
3400880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3410880e062SHong Zhang     baij->barray = barray;
3420880e062SHong Zhang   }
3430880e062SHong Zhang 
3440880e062SHong Zhang   if (roworiented) {
3450880e062SHong Zhang     stepval = (n-1)*bs;
3460880e062SHong Zhang   } else {
3470880e062SHong Zhang     stepval = (m-1)*bs;
3480880e062SHong Zhang   }
3490880e062SHong Zhang   for (i=0; i<m; i++) {
3500880e062SHong Zhang     if (im[i] < 0) continue;
3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
35277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3530880e062SHong Zhang #endif
3540880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3550880e062SHong Zhang       row = im[i] - rstart;
3560880e062SHong Zhang       for (j=0; j<n; j++) {
3570880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3580880e062SHong Zhang         if ((roworiented) && (n == 1)) {
359f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3600880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
361f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3620880e062SHong Zhang         } else { /* Here a copy is required */
3630880e062SHong Zhang           if (roworiented) {
3640880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3650880e062SHong Zhang           } else {
3660880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3670880e062SHong Zhang           }
3680880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3690880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3700880e062SHong Zhang               *barray++  = *value++;
3710880e062SHong Zhang             }
3720880e062SHong Zhang           }
3730880e062SHong Zhang           barray -=bs2;
3740880e062SHong Zhang         }
3750880e062SHong Zhang 
3760880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3770880e062SHong Zhang           col  = in[j] - cstart;
3780880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3790880e062SHong Zhang         }
3800880e062SHong Zhang         else if (in[j] < 0) continue;
3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
38277431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3830880e062SHong Zhang #endif
3840880e062SHong Zhang         else {
3850880e062SHong Zhang           if (mat->was_assembled) {
3860880e062SHong Zhang             if (!baij->colmap) {
387653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3880880e062SHong Zhang             }
3890880e062SHong Zhang 
3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3921302d50aSBarry Smith             { PetscInt data;
3930880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3940880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3950880e062SHong Zhang             }
3960880e062SHong Zhang #else
3970880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3980880e062SHong Zhang #endif
3990880e062SHong Zhang #endif
4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4010880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4020880e062SHong Zhang             col  = (col - 1)/bs;
4030880e062SHong Zhang #else
4040880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4050880e062SHong Zhang #endif
4060880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4070880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4080880e062SHong Zhang               col =  in[j];
4090880e062SHong Zhang             }
4100880e062SHong Zhang           }
4110880e062SHong Zhang           else col = in[j];
412e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4130880e062SHong Zhang         }
4140880e062SHong Zhang       }
4150880e062SHong Zhang     } else {
4160880e062SHong Zhang       if (!baij->donotstash) {
4170880e062SHong Zhang         if (roworiented) {
4180880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4190880e062SHong Zhang         } else {
4200880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4210880e062SHong Zhang         }
4220880e062SHong Zhang       }
4230880e062SHong Zhang     }
4240880e062SHong Zhang   }
4250880e062SHong Zhang   PetscFunctionReturn(0);
426a30f8f8cSSatish Balay }
427a30f8f8cSSatish Balay 
4284a2ae208SSatish Balay #undef __FUNCT__
4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
431a30f8f8cSSatish Balay {
432f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4336849ba73SBarry Smith   PetscErrorCode ierr;
434899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
435899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
436a30f8f8cSSatish Balay 
437a30f8f8cSSatish Balay   PetscFunctionBegin;
438a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
43997e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
440899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
441a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
442a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
443a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
44497e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
445899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
446a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
447a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
448c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
449a30f8f8cSSatish Balay         } else {
450a30f8f8cSSatish Balay           if (!baij->colmap) {
451653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
452a30f8f8cSSatish Balay           }
453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
454a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
455a30f8f8cSSatish Balay           data --;
456a30f8f8cSSatish Balay #else
457a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
458a30f8f8cSSatish Balay #endif
459a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
460a30f8f8cSSatish Balay           else {
461a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
462e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
463a30f8f8cSSatish Balay           }
464a30f8f8cSSatish Balay         }
465a30f8f8cSSatish Balay       }
466a30f8f8cSSatish Balay     } else {
46729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
468a30f8f8cSSatish Balay     }
469a30f8f8cSSatish Balay   }
470a30f8f8cSSatish Balay  PetscFunctionReturn(0);
471a30f8f8cSSatish Balay }
472a30f8f8cSSatish Balay 
4734a2ae208SSatish Balay #undef __FUNCT__
4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
476a30f8f8cSSatish Balay {
477a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
478dfbe8321SBarry Smith   PetscErrorCode ierr;
479a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
480a30f8f8cSSatish Balay 
481a30f8f8cSSatish Balay   PetscFunctionBegin;
482a30f8f8cSSatish Balay   if (baij->size == 1) {
483a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
484a30f8f8cSSatish Balay   } else {
485a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
486f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
487a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
488a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
489a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
490a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
491d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
492a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
493a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4940b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4950b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4960b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4970b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
498899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
499899cda47SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs;
5000b8dc8d2SHong Zhang       MatScalar    *v;
5010b8dc8d2SHong Zhang 
502899cda47SBarry Smith       ierr  = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
503899cda47SBarry Smith       rsum2 = rsum + mat->cmap.N;
504899cda47SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
5050b8dc8d2SHong Zhang       /* Amat */
5060b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5070b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5080b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5090b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5100b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5110b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5120b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5130b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5140b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5150b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5160b8dc8d2SHong Zhang               /* non-diagonal block */
5170b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5180b8dc8d2SHong Zhang             }
5190b8dc8d2SHong Zhang           }
5200b8dc8d2SHong Zhang         }
5210b8dc8d2SHong Zhang       }
5220b8dc8d2SHong Zhang       /* Bmat */
5230b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5240b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5250b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5260b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5270b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5280b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5290b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5300b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5310b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5320b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5330b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5340b8dc8d2SHong Zhang             }
5350b8dc8d2SHong Zhang           }
5360b8dc8d2SHong Zhang         }
5370b8dc8d2SHong Zhang       }
538899cda47SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5390b8dc8d2SHong Zhang       *norm = 0.0;
540899cda47SBarry Smith       for (col=0; col<mat->cmap.N; col++) {
5410b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5420b8dc8d2SHong Zhang       }
5430b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     } else {
54529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
546a30f8f8cSSatish Balay     }
547a30f8f8cSSatish Balay   }
548a30f8f8cSSatish Balay   PetscFunctionReturn(0);
549a30f8f8cSSatish Balay }
550a30f8f8cSSatish Balay 
5514a2ae208SSatish Balay #undef __FUNCT__
5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
554a30f8f8cSSatish Balay {
555a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
556dfbe8321SBarry Smith   PetscErrorCode ierr;
5571302d50aSBarry Smith   PetscInt       nstash,reallocs;
558a30f8f8cSSatish Balay   InsertMode     addv;
559a30f8f8cSSatish Balay 
560a30f8f8cSSatish Balay   PetscFunctionBegin;
561a30f8f8cSSatish Balay   if (baij->donotstash) {
562a30f8f8cSSatish Balay     PetscFunctionReturn(0);
563a30f8f8cSSatish Balay   }
564a30f8f8cSSatish Balay 
565a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
566a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
569a30f8f8cSSatish Balay   }
570a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
571a30f8f8cSSatish Balay 
572899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
573899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
575ae15b995SBarry Smith   ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
576a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
577ae15b995SBarry Smith   ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
578a30f8f8cSSatish Balay   PetscFunctionReturn(0);
579a30f8f8cSSatish Balay }
580a30f8f8cSSatish Balay 
5814a2ae208SSatish Balay #undef __FUNCT__
5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
584a30f8f8cSSatish Balay {
585a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
586a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5876849ba73SBarry Smith   PetscErrorCode ierr;
58813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5891302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
59013f74950SBarry Smith   PetscMPIInt    n;
591a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
592a30f8f8cSSatish Balay   MatScalar      *val;
593a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
594a30f8f8cSSatish Balay 
59591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
596a30f8f8cSSatish Balay   PetscFunctionBegin;
597a30f8f8cSSatish Balay 
598a30f8f8cSSatish Balay   if (!baij->donotstash) {
599a30f8f8cSSatish Balay     while (1) {
600a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
601a30f8f8cSSatish Balay       if (!flg) break;
602a30f8f8cSSatish Balay 
603a30f8f8cSSatish Balay       for (i=0; i<n;) {
604a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
605a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
606a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
607a30f8f8cSSatish Balay         else       ncols = n-i;
608a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
609a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
610a30f8f8cSSatish Balay         i = j;
611a30f8f8cSSatish Balay       }
612a30f8f8cSSatish Balay     }
613a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
614a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
615a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
616a30f8f8cSSatish Balay        restore the original flags */
617a30f8f8cSSatish Balay     r1 = baij->roworiented;
618a30f8f8cSSatish Balay     r2 = a->roworiented;
61991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
620a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
621a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
62291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
623a30f8f8cSSatish Balay     while (1) {
624a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       if (!flg) break;
626a30f8f8cSSatish Balay 
627a30f8f8cSSatish Balay       for (i=0; i<n;) {
628a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
629a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
630a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
631a30f8f8cSSatish Balay         else       ncols = n-i;
632a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
633a30f8f8cSSatish Balay         i = j;
634a30f8f8cSSatish Balay       }
635a30f8f8cSSatish Balay     }
636a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
637a30f8f8cSSatish Balay     baij->roworiented = r1;
638a30f8f8cSSatish Balay     a->roworiented    = r2;
63991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
643a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
644a30f8f8cSSatish Balay 
645a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
646a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
647a30f8f8cSSatish Balay   /*
648a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
649a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
650a30f8f8cSSatish Balay   */
651a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
652a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
653a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
654c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
655a30f8f8cSSatish Balay     }
656a30f8f8cSSatish Balay   }
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
65940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
660a30f8f8cSSatish Balay   }
66191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
662a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
663a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
664a30f8f8cSSatish Balay 
665a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
666a30f8f8cSSatish Balay   baij->rowvalues = 0;
6675222a1afSHong Zhang 
668a30f8f8cSSatish Balay   PetscFunctionReturn(0);
669a30f8f8cSSatish Balay }
670a30f8f8cSSatish Balay 
671799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
6724a2ae208SSatish Balay #undef __FUNCT__
6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
675a30f8f8cSSatish Balay {
676a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
677dfbe8321SBarry Smith   PetscErrorCode    ierr;
678899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
6791302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
68032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
681b0a32e0cSBarry Smith   PetscViewer       sviewer;
682f3ef73ceSBarry Smith   PetscViewerFormat format;
683a30f8f8cSSatish Balay 
684a30f8f8cSSatish Balay   PetscFunctionBegin;
68532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
686fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68732077d6dSBarry Smith   if (iascii) {
688b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
689456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
690a30f8f8cSSatish Balay       MatInfo info;
691a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
692a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
69377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
694899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
695899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
696a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
698a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
700b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
70107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
702a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
703a30f8f8cSSatish Balay       PetscFunctionReturn(0);
704fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
70577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
706a30f8f8cSSatish Balay       PetscFunctionReturn(0);
707c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
708c1490034SHong Zhang       PetscFunctionReturn(0);
709a30f8f8cSSatish Balay     }
710a30f8f8cSSatish Balay   }
711a30f8f8cSSatish Balay 
712a30f8f8cSSatish Balay   if (isdraw) {
713b0a32e0cSBarry Smith     PetscDraw  draw;
714a30f8f8cSSatish Balay     PetscTruth isnull;
715b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
716b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
717a30f8f8cSSatish Balay   }
718a30f8f8cSSatish Balay 
719a30f8f8cSSatish Balay   if (size == 1) {
720e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
721a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
722a30f8f8cSSatish Balay   } else {
723a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
724a30f8f8cSSatish Balay     Mat          A;
72565d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
72665d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
727899cda47SBarry Smith     PetscInt     M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
728a30f8f8cSSatish Balay     MatScalar    *a;
729a30f8f8cSSatish Balay 
730f204ca49SKris Buschelman     /* Should this be the same type as mat? */
731f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
732a30f8f8cSSatish Balay     if (!rank) {
733f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
734a30f8f8cSSatish Balay     } else {
735f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
736a30f8f8cSSatish Balay     }
737f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
738899cda47SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
73952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
740a30f8f8cSSatish Balay 
741a30f8f8cSSatish Balay     /* copy over the A part */
74265d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
743a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7441302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
745a30f8f8cSSatish Balay 
746a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
747e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
748a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
749a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
750e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
751a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
752a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
753a30f8f8cSSatish Balay           col++; a += bs;
754a30f8f8cSSatish Balay         }
755a30f8f8cSSatish Balay       }
756a30f8f8cSSatish Balay     }
757a30f8f8cSSatish Balay     /* copy over the B part */
75865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
75965d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
760a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
761e9f7bc9eSHong Zhang 
762e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
763a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
764a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
765a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
766a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
767799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
768a30f8f8cSSatish Balay           col++; a += bs;
769a30f8f8cSSatish Balay         }
770a30f8f8cSSatish Balay       }
771a30f8f8cSSatish Balay     }
772a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
773a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
774a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
775a30f8f8cSSatish Balay     /*
776a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
777b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
778a30f8f8cSSatish Balay     */
779b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
78065d70643SHong Zhang     if (!rank) {
781e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
782a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
783a30f8f8cSSatish Balay     }
784b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
785a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
786a30f8f8cSSatish Balay   }
787a30f8f8cSSatish Balay   PetscFunctionReturn(0);
788a30f8f8cSSatish Balay }
789a30f8f8cSSatish Balay 
7904a2ae208SSatish Balay #undef __FUNCT__
7914a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
792dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
793a30f8f8cSSatish Balay {
794dfbe8321SBarry Smith   PetscErrorCode ierr;
79532077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
796a30f8f8cSSatish Balay 
797a30f8f8cSSatish Balay   PetscFunctionBegin;
79832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
799fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
800b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
801fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
80232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
803a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
804a30f8f8cSSatish Balay   } else {
8051302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
806a30f8f8cSSatish Balay   }
807a30f8f8cSSatish Balay   PetscFunctionReturn(0);
808a30f8f8cSSatish Balay }
809a30f8f8cSSatish Balay 
8104a2ae208SSatish Balay #undef __FUNCT__
8114a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
812dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
813a30f8f8cSSatish Balay {
814a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
815dfbe8321SBarry Smith   PetscErrorCode ierr;
816a30f8f8cSSatish Balay 
817a30f8f8cSSatish Balay   PetscFunctionBegin;
818a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
819899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
820a30f8f8cSSatish Balay #endif
821a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
822a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
823a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
824a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
825a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
8269c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
827a30f8f8cSSatish Balay #else
82805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
829a30f8f8cSSatish Balay #endif
83005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
831a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
832a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
83340781036SHong Zhang   if (baij->slvec0) {
83440781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
83540781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
83640781036SHong Zhang   }
83740781036SHong Zhang   if (baij->slvec1) {
83840781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
83940781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
84040781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
84140781036SHong Zhang   }
84240781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
84305b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
84405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
84505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
846a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
84705b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
848a30f8f8cSSatish Balay #endif
84959ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
85059ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
851899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
852a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
853901853e0SKris Buschelman 
854dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
855901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
856901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
857901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
858901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
859a30f8f8cSSatish Balay   PetscFunctionReturn(0);
860a30f8f8cSSatish Balay }
861a30f8f8cSSatish Balay 
8624a2ae208SSatish Balay #undef __FUNCT__
863a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
864dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
865a9d4b620SHong Zhang {
866a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
867dfbe8321SBarry Smith   PetscErrorCode ierr;
868899cda47SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap.bs;
869a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
870a9d4b620SHong Zhang 
871a9d4b620SHong Zhang   PetscFunctionBegin;
872a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
873899cda47SBarry Smith   if (nt != A->cmap.n) {
874a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
875a9d4b620SHong Zhang   }
876a9d4b620SHong Zhang 
877a9d4b620SHong Zhang   /* diagonal part */
878a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8792dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
880a9d4b620SHong Zhang 
881a9d4b620SHong Zhang   /* subdiagonal part */
882a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
883899cda47SBarry Smith   CHKMEMQ;
884a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8851ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8861ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
887899cda47SBarry Smith   CHKMEMQ;
888a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
889899cda47SBarry Smith   CHKMEMQ;
8901ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
891a9d4b620SHong Zhang 
892899cda47SBarry Smith   CHKMEMQ;
893ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
894899cda47SBarry Smith   CHKMEMQ;
8951ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
896899cda47SBarry Smith   CHKMEMQ;
897ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
898899cda47SBarry Smith     CHKMEMQ;
899a9d4b620SHong Zhang   /* supperdiagonal part */
900a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
901899cda47SBarry Smith     CHKMEMQ;
902a9d4b620SHong Zhang   PetscFunctionReturn(0);
903a9d4b620SHong Zhang }
904a9d4b620SHong Zhang 
905a9d4b620SHong Zhang #undef __FUNCT__
90640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
907dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
908a30f8f8cSSatish Balay {
909a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
910dfbe8321SBarry Smith   PetscErrorCode ierr;
9111302d50aSBarry Smith   PetscInt       nt;
912a30f8f8cSSatish Balay 
913a30f8f8cSSatish Balay   PetscFunctionBegin;
914a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
915899cda47SBarry Smith   if (nt != A->cmap.n) {
91629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
917a30f8f8cSSatish Balay   }
918a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
919899cda47SBarry Smith   if (nt != A->rmap.N) {
92029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
921a30f8f8cSSatish Balay   }
92265d70643SHong Zhang 
923ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
924b941877fSHong Zhang   /* do diagonal part */
925b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
926b941877fSHong Zhang   /* do supperdiagonal part */
927ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
928b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
929b941877fSHong Zhang   /* do subdiagonal part */
930b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
931ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
932ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
93365d70643SHong Zhang 
934a30f8f8cSSatish Balay   PetscFunctionReturn(0);
935a30f8f8cSSatish Balay }
936a30f8f8cSSatish Balay 
9374a2ae208SSatish Balay #undef __FUNCT__
9384a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
939dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
940a30f8f8cSSatish Balay {
941de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
942dfbe8321SBarry Smith   PetscErrorCode ierr;
943899cda47SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap.bs;
944a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
945a9d4b620SHong Zhang 
946a9d4b620SHong Zhang   PetscFunctionBegin;
947a9d4b620SHong Zhang   /*
94856faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
94956faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
950a9d4b620SHong Zhang   */
951a9d4b620SHong Zhang   /* diagonal part */
952a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9532dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
954a9d4b620SHong Zhang 
955a9d4b620SHong Zhang   /* subdiagonal part */
956a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
957a9d4b620SHong Zhang 
958a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9591ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9601ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
961a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9621ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
963a9d4b620SHong Zhang 
964ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9651ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
966ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
967a9d4b620SHong Zhang 
968a9d4b620SHong Zhang   /* supperdiagonal part */
969a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
970a9d4b620SHong Zhang 
971a9d4b620SHong Zhang   PetscFunctionReturn(0);
972a9d4b620SHong Zhang }
973a9d4b620SHong Zhang 
974a9d4b620SHong Zhang #undef __FUNCT__
975a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
976dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
977a9d4b620SHong Zhang {
978a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
979dfbe8321SBarry Smith   PetscErrorCode ierr;
980a30f8f8cSSatish Balay 
981a30f8f8cSSatish Balay   PetscFunctionBegin;
982ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
983b941877fSHong Zhang   /* do diagonal part */
984b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
985b941877fSHong Zhang   /* do supperdiagonal part */
986ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
987de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
988de8b6608SHong Zhang 
989b941877fSHong Zhang   /* do subdiagonal part */
990a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
991ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
992ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
993aa482183SHong Zhang 
994a30f8f8cSSatish Balay   PetscFunctionReturn(0);
995a30f8f8cSSatish Balay }
996a30f8f8cSSatish Balay 
997a30f8f8cSSatish Balay /*
998a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
999a30f8f8cSSatish Balay    diagonal block
1000a30f8f8cSSatish Balay */
10014a2ae208SSatish Balay #undef __FUNCT__
10024a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1003dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1004a30f8f8cSSatish Balay {
1005a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1006dfbe8321SBarry Smith   PetscErrorCode ierr;
1007a30f8f8cSSatish Balay 
1008a30f8f8cSSatish Balay   PetscFunctionBegin;
1009899cda47SBarry Smith   /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1010a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1011a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1012a30f8f8cSSatish Balay }
1013a30f8f8cSSatish Balay 
10144a2ae208SSatish Balay #undef __FUNCT__
10154a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1016f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1017a30f8f8cSSatish Balay {
1018a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1019dfbe8321SBarry Smith   PetscErrorCode ierr;
1020a30f8f8cSSatish Balay 
1021a30f8f8cSSatish Balay   PetscFunctionBegin;
1022f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1023f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1024a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1025a30f8f8cSSatish Balay }
1026a30f8f8cSSatish Balay 
10274a2ae208SSatish Balay #undef __FUNCT__
10284a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10291302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1030a30f8f8cSSatish Balay {
1031d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1032d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1033d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1034899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1035899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1036899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1037d0d4cfc2SHong Zhang 
1038a30f8f8cSSatish Balay   PetscFunctionBegin;
1039d0d4cfc2SHong Zhang   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1040d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1041d0d4cfc2SHong Zhang 
1042d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1043d0d4cfc2SHong Zhang     /*
1044d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1045d0d4cfc2SHong Zhang     */
1046d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1047d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1048d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1049d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1050d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1051d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1052d0d4cfc2SHong Zhang     }
1053d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1054d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1055d0d4cfc2SHong Zhang   }
1056d0d4cfc2SHong Zhang 
1057d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1058d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1059d0d4cfc2SHong Zhang 
1060d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1061d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1062d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1063d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1064d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1065d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1066d0d4cfc2SHong Zhang 
1067d0d4cfc2SHong Zhang   cmap  = mat->garray;
1068d0d4cfc2SHong Zhang   if (v  || idx) {
1069d0d4cfc2SHong Zhang     if (nztot) {
1070d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1071d0d4cfc2SHong Zhang       PetscInt imark = -1;
1072d0d4cfc2SHong Zhang       if (v) {
1073d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1074d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1075d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1076d0d4cfc2SHong Zhang           else break;
1077d0d4cfc2SHong Zhang         }
1078d0d4cfc2SHong Zhang         imark = i;
1079d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1080d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1081d0d4cfc2SHong Zhang       }
1082d0d4cfc2SHong Zhang       if (idx) {
1083d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1084d0d4cfc2SHong Zhang         if (imark > -1) {
1085d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1086d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1087d0d4cfc2SHong Zhang           }
1088d0d4cfc2SHong Zhang         } else {
1089d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1090d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1091d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1092d0d4cfc2SHong Zhang             else break;
1093d0d4cfc2SHong Zhang           }
1094d0d4cfc2SHong Zhang           imark = i;
1095d0d4cfc2SHong Zhang         }
1096d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1097d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1098d0d4cfc2SHong Zhang       }
1099d0d4cfc2SHong Zhang     } else {
1100d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1101d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1102d0d4cfc2SHong Zhang     }
1103d0d4cfc2SHong Zhang   }
1104d0d4cfc2SHong Zhang   *nz = nztot;
1105d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1106d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1107a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1108a30f8f8cSSatish Balay }
1109a30f8f8cSSatish Balay 
11104a2ae208SSatish Balay #undef __FUNCT__
11114a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
11121302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1113a30f8f8cSSatish Balay {
1114a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1115a30f8f8cSSatish Balay 
1116a30f8f8cSSatish Balay   PetscFunctionBegin;
1117abc0a331SBarry Smith   if (!baij->getrowactive) {
1118abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1119a30f8f8cSSatish Balay   }
1120a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1121a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1122a30f8f8cSSatish Balay }
1123a30f8f8cSSatish Balay 
11244a2ae208SSatish Balay #undef __FUNCT__
1125d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1126d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1127d0d4cfc2SHong Zhang {
1128d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1129d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1130d0d4cfc2SHong Zhang 
1131d0d4cfc2SHong Zhang   PetscFunctionBegin;
1132d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1133d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1134d0d4cfc2SHong Zhang }
1135d0d4cfc2SHong Zhang #undef __FUNCT__
1136d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1137d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1138d0d4cfc2SHong Zhang {
1139d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1140d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1141d0d4cfc2SHong Zhang 
1142d0d4cfc2SHong Zhang   PetscFunctionBegin;
1143d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1144d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1145d0d4cfc2SHong Zhang }
1146d0d4cfc2SHong Zhang 
1147d0d4cfc2SHong Zhang #undef __FUNCT__
114899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
114999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
115099cafbc1SBarry Smith {
115199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
115299cafbc1SBarry Smith   PetscErrorCode ierr;
115399cafbc1SBarry Smith 
115499cafbc1SBarry Smith   PetscFunctionBegin;
115599cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
115699cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
115799cafbc1SBarry Smith   PetscFunctionReturn(0);
115899cafbc1SBarry Smith }
115999cafbc1SBarry Smith 
116099cafbc1SBarry Smith #undef __FUNCT__
116199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
116299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
116399cafbc1SBarry Smith {
116499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
116599cafbc1SBarry Smith   PetscErrorCode ierr;
116699cafbc1SBarry Smith 
116799cafbc1SBarry Smith   PetscFunctionBegin;
116899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
116999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
117099cafbc1SBarry Smith   PetscFunctionReturn(0);
117199cafbc1SBarry Smith }
117299cafbc1SBarry Smith 
117399cafbc1SBarry Smith #undef __FUNCT__
11744a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1175dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1176a30f8f8cSSatish Balay {
1177a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1178dfbe8321SBarry Smith   PetscErrorCode ierr;
1179a30f8f8cSSatish Balay 
1180a30f8f8cSSatish Balay   PetscFunctionBegin;
1181a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1182a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1183a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1184a30f8f8cSSatish Balay }
1185a30f8f8cSSatish Balay 
11864a2ae208SSatish Balay #undef __FUNCT__
11874a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1188dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1189a30f8f8cSSatish Balay {
1190a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1191a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1192dfbe8321SBarry Smith   PetscErrorCode ierr;
1193a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1194a30f8f8cSSatish Balay 
1195a30f8f8cSSatish Balay   PetscFunctionBegin;
1196899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
1197a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1198a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1199a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1200a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1201a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1202a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1203a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1204a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1205a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1206a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1207a30f8f8cSSatish Balay     info->memory       = isend[3];
1208a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1209a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1210d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1211a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1212a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1213a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1214a30f8f8cSSatish Balay     info->memory       = irecv[3];
1215a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1216a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1217d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1218a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1219a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1220a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1221a30f8f8cSSatish Balay     info->memory       = irecv[3];
1222a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1223a30f8f8cSSatish Balay   } else {
122477431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1225a30f8f8cSSatish Balay   }
1226899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1227899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1228899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1229899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
1230a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1231a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1232a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1233a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1234a30f8f8cSSatish Balay }
1235a30f8f8cSSatish Balay 
12364a2ae208SSatish Balay #undef __FUNCT__
12374a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1238*4e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1239a30f8f8cSSatish Balay {
1240a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1241d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1242dfbe8321SBarry Smith   PetscErrorCode ierr;
1243a30f8f8cSSatish Balay 
1244a30f8f8cSSatish Balay   PetscFunctionBegin;
1245e98b92d7SKris Buschelman   switch (op) {
1246e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1247e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1248e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1249e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1250e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1251*4e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1252*4e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1253e98b92d7SKris Buschelman     break;
1254e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1255*4e0d8c25SBarry Smith     a->roworiented = flg;
1256*4e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1257*4e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1258e98b92d7SKris Buschelman     break;
1259e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1260*4e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1261290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1262e98b92d7SKris Buschelman     break;
1263e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1264*4e0d8c25SBarry Smith     a->donotstash = flg;
1265e98b92d7SKris Buschelman     break;
1266e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1267*4e0d8c25SBarry Smith     a->ht_flag = flg;
1268e98b92d7SKris Buschelman     break;
12699a4540c5SBarry Smith   case MAT_HERMITIAN:
1270*4e0d8c25SBarry Smith     if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
127177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
127277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12739a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1274*4e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1275290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
127677e54ba9SKris Buschelman     break;
1277d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
1278*4e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1279d0d4cfc2SHong Zhang     break;
1280d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
1281*4e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1282d0d4cfc2SHong Zhang     break;
1283d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
1284*4e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1285d0d4cfc2SHong Zhang     break;
1286e98b92d7SKris Buschelman   default:
1287ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1288a30f8f8cSSatish Balay   }
1289a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1290a30f8f8cSSatish Balay }
1291a30f8f8cSSatish Balay 
12924a2ae208SSatish Balay #undef __FUNCT__
12938115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1294dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1295a30f8f8cSSatish Balay {
1296dfbe8321SBarry Smith   PetscErrorCode ierr;
1297a30f8f8cSSatish Balay   PetscFunctionBegin;
1298999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
12998115998fSBarry Smith   PetscFunctionReturn(0);
1300a30f8f8cSSatish Balay }
1301a30f8f8cSSatish Balay 
13024a2ae208SSatish Balay #undef __FUNCT__
13034a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1304dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1305a30f8f8cSSatish Balay {
1306a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1307a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1308dfbe8321SBarry Smith   PetscErrorCode ierr;
13095e90f9d9SHong Zhang   PetscInt       nv,m,n;
1310b3bf805bSHong Zhang   PetscTruth     flg;
1311a30f8f8cSSatish Balay 
1312a30f8f8cSSatish Balay   PetscFunctionBegin;
1313a30f8f8cSSatish Balay   if (ll != rr){
1314b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1315b3bf805bSHong Zhang     if (!flg)
131629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1317a30f8f8cSSatish Balay   }
1318b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1319b3bf805bSHong Zhang 
13205e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
13215e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1322b3bf805bSHong Zhang 
13235e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
13245e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13255e90f9d9SHong Zhang 
1326ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13275e90f9d9SHong Zhang 
13285e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1329a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13305e90f9d9SHong Zhang 
13315e90f9d9SHong Zhang   /* scale the diagonal part */
1332a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1333a30f8f8cSSatish Balay 
13345e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1335ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1336a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1337a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1338a30f8f8cSSatish Balay }
1339a30f8f8cSSatish Balay 
13404a2ae208SSatish Balay #undef __FUNCT__
13414a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1342dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1343a30f8f8cSSatish Balay {
1344f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1345dfbe8321SBarry Smith   PetscErrorCode ierr;
1346a30f8f8cSSatish Balay 
1347a30f8f8cSSatish Balay   PetscFunctionBegin;
1348a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1349a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1350a30f8f8cSSatish Balay }
1351a30f8f8cSSatish Balay 
13526849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1353a30f8f8cSSatish Balay 
13544a2ae208SSatish Balay #undef __FUNCT__
13554a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1356dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1357a30f8f8cSSatish Balay {
1358a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1359a30f8f8cSSatish Balay   Mat            a,b,c,d;
1360a30f8f8cSSatish Balay   PetscTruth     flg;
1361dfbe8321SBarry Smith   PetscErrorCode ierr;
1362a30f8f8cSSatish Balay 
1363a30f8f8cSSatish Balay   PetscFunctionBegin;
1364a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1365a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1366a30f8f8cSSatish Balay 
1367a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1368abc0a331SBarry Smith   if (flg) {
1369a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1370a30f8f8cSSatish Balay   }
1371a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1372a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1373a30f8f8cSSatish Balay }
1374a30f8f8cSSatish Balay 
13754a2ae208SSatish Balay #undef __FUNCT__
13763c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13773c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13783c896bc6SHong Zhang {
13793c896bc6SHong Zhang   PetscErrorCode ierr;
13803c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13813c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13823c896bc6SHong Zhang 
13833c896bc6SHong Zhang   PetscFunctionBegin;
13843c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13853c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1386d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13873c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1388d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13893c896bc6SHong Zhang   } else {
13903c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13913c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13923c896bc6SHong Zhang   }
13933c896bc6SHong Zhang   PetscFunctionReturn(0);
13943c896bc6SHong Zhang }
13953c896bc6SHong Zhang 
13963c896bc6SHong Zhang #undef __FUNCT__
13974a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1398dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1399273d9f13SBarry Smith {
1400dfbe8321SBarry Smith   PetscErrorCode ierr;
1401273d9f13SBarry Smith 
1402273d9f13SBarry Smith   PetscFunctionBegin;
14037edd0491SSatish Balay   ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1404273d9f13SBarry Smith   PetscFunctionReturn(0);
1405273d9f13SBarry Smith }
1406a5e6ed63SBarry Smith 
14074fe895cdSHong Zhang #include "petscblaslapack.h"
14084fe895cdSHong Zhang #undef __FUNCT__
14094fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14104fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14114fe895cdSHong Zhang {
14124fe895cdSHong Zhang   PetscErrorCode ierr;
14134fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
14144fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14154fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14164fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14174fe895cdSHong Zhang 
14184fe895cdSHong Zhang   PetscFunctionBegin;
14194fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14204fe895cdSHong Zhang     PetscScalar alpha = a;
14214fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
14224fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
14234fe895cdSHong Zhang     bnz = (PetscBLASInt)xa->nz;
14244fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
14254fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
14264fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
14274fe895cdSHong Zhang     bnz = (PetscBLASInt)xb->nz;
14284fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
14294fe895cdSHong Zhang   } else {
1430d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14314fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1432d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14334fe895cdSHong Zhang   }
14344fe895cdSHong Zhang   PetscFunctionReturn(0);
14354fe895cdSHong Zhang }
14364fe895cdSHong Zhang 
1437a5e6ed63SBarry Smith #undef __FUNCT__
1438a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14391302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1440a5e6ed63SBarry Smith {
14416849ba73SBarry Smith   PetscErrorCode ierr;
14421302d50aSBarry Smith   PetscInt       i;
1443a5e6ed63SBarry Smith   PetscTruth     flg;
1444a5e6ed63SBarry Smith 
14456849ba73SBarry Smith   PetscFunctionBegin;
1446a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1447a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1448a5e6ed63SBarry Smith     if (!flg) {
14491302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1450a5e6ed63SBarry Smith     }
1451a5e6ed63SBarry Smith   }
1452a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1453a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1454a5e6ed63SBarry Smith }
1455a5e6ed63SBarry Smith 
1456a5e6ed63SBarry Smith 
1457a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1458a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1459a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1460a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1462a9d4b620SHong Zhang        MatMult_MPISBAIJ,
146397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1464431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1465431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1466a30f8f8cSSatish Balay        0,
1467a30f8f8cSSatish Balay        0,
1468a30f8f8cSSatish Balay        0,
146997304618SKris Buschelman /*10*/ 0,
1470a30f8f8cSSatish Balay        0,
1471a30f8f8cSSatish Balay        0,
14722798e883SHong Zhang        MatRelax_MPISBAIJ,
1473a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
147497304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1475a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1476a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1477a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1478a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
147997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1480a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1481a30f8f8cSSatish Balay        0,
1482a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1483a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1484dcf5cc72SBarry Smith /*25*/ 0,
1485a30f8f8cSSatish Balay        0,
1486a30f8f8cSSatish Balay        0,
1487a30f8f8cSSatish Balay        0,
1488a30f8f8cSSatish Balay        0,
148997304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1490b5df2d14SHong Zhang        0,
1491a30f8f8cSSatish Balay        0,
1492a30f8f8cSSatish Balay        0,
1493a30f8f8cSSatish Balay        0,
149497304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        0,
1497a30f8f8cSSatish Balay        0,
1498a30f8f8cSSatish Balay        0,
14994fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1500a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1501d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1502a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
15033c896bc6SHong Zhang        MatCopy_MPISBAIJ,
15048c07d4e3SBarry Smith /*45*/ 0,
1505a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1506a30f8f8cSSatish Balay        0,
1507a30f8f8cSSatish Balay        0,
1508a30f8f8cSSatish Balay        0,
1509521d7252SBarry Smith /*50*/ 0,
1510a30f8f8cSSatish Balay        0,
1511a30f8f8cSSatish Balay        0,
1512a30f8f8cSSatish Balay        0,
1513a30f8f8cSSatish Balay        0,
151497304618SKris Buschelman /*55*/ 0,
1515a30f8f8cSSatish Balay        0,
1516a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1517a30f8f8cSSatish Balay        0,
1518a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
151997304618SKris Buschelman /*60*/ 0,
1520a30f8f8cSSatish Balay        0,
1521a30f8f8cSSatish Balay        0,
1522357abbc8SBarry Smith        0,
152324d5174aSHong Zhang        0,
152497304618SKris Buschelman /*65*/ 0,
152524d5174aSHong Zhang        0,
152624d5174aSHong Zhang        0,
152724d5174aSHong Zhang        0,
152824d5174aSHong Zhang        0,
1529985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPISBAIJ,
153024d5174aSHong Zhang        0,
153197304618SKris Buschelman        0,
153297304618SKris Buschelman        0,
153397304618SKris Buschelman        0,
153497304618SKris Buschelman /*75*/ 0,
153597304618SKris Buschelman        0,
153697304618SKris Buschelman        0,
153797304618SKris Buschelman        0,
153897304618SKris Buschelman        0,
153997304618SKris Buschelman /*80*/ 0,
154097304618SKris Buschelman        0,
154197304618SKris Buschelman        0,
154297304618SKris Buschelman        0,
1543865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1544865e5f61SKris Buschelman /*85*/ 0,
1545865e5f61SKris Buschelman        0,
1546865e5f61SKris Buschelman        0,
1547865e5f61SKris Buschelman        0,
1548865e5f61SKris Buschelman        0,
1549865e5f61SKris Buschelman /*90*/ 0,
1550865e5f61SKris Buschelman        0,
1551865e5f61SKris Buschelman        0,
1552865e5f61SKris Buschelman        0,
1553865e5f61SKris Buschelman        0,
1554865e5f61SKris Buschelman /*95*/ 0,
1555865e5f61SKris Buschelman        0,
1556865e5f61SKris Buschelman        0,
155799cafbc1SBarry Smith        0,
155899cafbc1SBarry Smith        0,
155999cafbc1SBarry Smith /*100*/0,
156099cafbc1SBarry Smith        0,
156199cafbc1SBarry Smith        0,
156299cafbc1SBarry Smith        0,
156399cafbc1SBarry Smith        0,
156499cafbc1SBarry Smith /*105*/0,
156599cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1566d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1567d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1568d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
156999cafbc1SBarry Smith };
1570a30f8f8cSSatish Balay 
1571a30f8f8cSSatish Balay 
1572a30f8f8cSSatish Balay EXTERN_C_BEGIN
15734a2ae208SSatish Balay #undef __FUNCT__
15744a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1575be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1576a30f8f8cSSatish Balay {
1577a30f8f8cSSatish Balay   PetscFunctionBegin;
1578a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1579a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1580a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1581a30f8f8cSSatish Balay }
1582a30f8f8cSSatish Balay EXTERN_C_END
1583a30f8f8cSSatish Balay 
1584273d9f13SBarry Smith EXTERN_C_BEGIN
15854a2ae208SSatish Balay #undef __FUNCT__
1586a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1587be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1588a23d5eceSKris Buschelman {
1589a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1590dfbe8321SBarry Smith   PetscErrorCode ierr;
15911302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1592a23d5eceSKris Buschelman 
1593a23d5eceSKris Buschelman   PetscFunctionBegin;
159477925062SSatish Balay   ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
15958c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
15968c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1597a23d5eceSKris Buschelman 
1598a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1599a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1600a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
160177431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
160277431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1603899cda47SBarry Smith 
1604899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
16056148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr);
16066148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr);
1607899cda47SBarry Smith 
1608a23d5eceSKris Buschelman   if (d_nnz) {
1609899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
161077431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1611a23d5eceSKris Buschelman     }
1612a23d5eceSKris Buschelman   }
1613a23d5eceSKris Buschelman   if (o_nnz) {
1614899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
161577431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1616a23d5eceSKris Buschelman     }
1617a23d5eceSKris Buschelman   }
1618a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1619a23d5eceSKris Buschelman 
1620a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1621899cda47SBarry Smith   mbs = B->rmap.n/bs;
1622899cda47SBarry Smith   Mbs = B->rmap.N/bs;
1623899cda47SBarry Smith   if (mbs*bs != B->rmap.n) {
1624899cda47SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs);
1625a23d5eceSKris Buschelman   }
1626a23d5eceSKris Buschelman 
1627899cda47SBarry Smith   B->rmap.bs  = bs;
1628a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1629a23d5eceSKris Buschelman   b->mbs = mbs;
1630a23d5eceSKris Buschelman   b->nbs = mbs;
1631a23d5eceSKris Buschelman   b->Mbs = Mbs;
1632a23d5eceSKris Buschelman   b->Nbs = Mbs;
1633a23d5eceSKris Buschelman 
1634a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1635899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
1636a23d5eceSKris Buschelman   }
1637899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
1638899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
1639a23d5eceSKris Buschelman 
1640899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
1641899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
1642a23d5eceSKris Buschelman 
1643f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1644899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
16459c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1646c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
164752e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
16489c097c71SKris Buschelman 
1649f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1650899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
16514aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1652589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
165352e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1654a23d5eceSKris Buschelman 
1655a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1656a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1657a23d5eceSKris Buschelman 
1658a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1659a23d5eceSKris Buschelman }
1660a23d5eceSKris Buschelman EXTERN_C_END
1661a23d5eceSKris Buschelman 
16620bad9183SKris Buschelman /*MC
1663fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16640bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16650bad9183SKris Buschelman 
16660bad9183SKris Buschelman    Options Database Keys:
16670bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16680bad9183SKris Buschelman 
16690bad9183SKris Buschelman   Level: beginner
16700bad9183SKris Buschelman 
16710bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16720bad9183SKris Buschelman M*/
16730bad9183SKris Buschelman 
1674a23d5eceSKris Buschelman EXTERN_C_BEGIN
1675a23d5eceSKris Buschelman #undef __FUNCT__
16764a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1677be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1678b5df2d14SHong Zhang {
1679b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1680dfbe8321SBarry Smith   PetscErrorCode ierr;
1681b5df2d14SHong Zhang   PetscTruth     flg;
1682b5df2d14SHong Zhang 
1683b5df2d14SHong Zhang   PetscFunctionBegin;
1684b5df2d14SHong Zhang 
168538f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1686b0a32e0cSBarry Smith   B->data = (void*)b;
1687b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1688b5df2d14SHong Zhang 
1689b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1690b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1691b5df2d14SHong Zhang   B->mapping    = 0;
1692b5df2d14SHong Zhang   B->factor     = 0;
1693b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1694b5df2d14SHong Zhang 
1695b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1696b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1697b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1698b5df2d14SHong Zhang 
1699b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1700899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1701b5df2d14SHong Zhang 
1702b5df2d14SHong Zhang   /* build cache for off array entries formed */
1703b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1704b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1705b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1706b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1707b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1708b5df2d14SHong Zhang 
1709f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1710b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
171164a35ccbSBarry Smith   b->setvalueslen     = 0;
1712b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1713b5df2d14SHong Zhang #endif
1714b5df2d14SHong Zhang 
1715b5df2d14SHong Zhang   /* stuff used in block assembly */
1716b5df2d14SHong Zhang   b->barray       = 0;
1717b5df2d14SHong Zhang 
1718b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1719b5df2d14SHong Zhang   b->lvec         = 0;
1720b5df2d14SHong Zhang   b->Mvctx        = 0;
172140781036SHong Zhang   b->slvec0       = 0;
172240781036SHong Zhang   b->slvec0b      = 0;
172340781036SHong Zhang   b->slvec1       = 0;
172440781036SHong Zhang   b->slvec1a      = 0;
172540781036SHong Zhang   b->slvec1b      = 0;
172640781036SHong Zhang   b->sMvctx       = 0;
1727b5df2d14SHong Zhang 
1728b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1729b5df2d14SHong Zhang   b->rowindices   = 0;
1730b5df2d14SHong Zhang   b->rowvalues    = 0;
1731b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1732b5df2d14SHong Zhang 
1733b5df2d14SHong Zhang   /* hash table stuff */
1734b5df2d14SHong Zhang   b->ht           = 0;
1735b5df2d14SHong Zhang   b->hd           = 0;
1736b5df2d14SHong Zhang   b->ht_size      = 0;
1737b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1738b5df2d14SHong Zhang   b->ht_fact      = 0;
1739b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1740b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1741b5df2d14SHong Zhang 
174259ffdab8SBarry Smith   b->in_loc       = 0;
174359ffdab8SBarry Smith   b->v_loc        = 0;
174459ffdab8SBarry Smith   b->n_loc        = 0;
174577925062SSatish Balay   ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17468c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1747b5df2d14SHong Zhang     if (flg) {
1748f6275e2eSBarry Smith       PetscReal fact = 1.39;
1749*4e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17508c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1751b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1752b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1753ae15b995SBarry Smith       ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1754b5df2d14SHong Zhang     }
17558c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17568c07d4e3SBarry Smith 
1757b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1758b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1759b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1760b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1761b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1762b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1763b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1764b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1765b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1766a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1767a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1768a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
176923ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
177023ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
177123ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
177223ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
177317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1774b5df2d14SHong Zhang   PetscFunctionReturn(0);
1775b5df2d14SHong Zhang }
1776273d9f13SBarry Smith EXTERN_C_END
1777b5df2d14SHong Zhang 
1778209238afSKris Buschelman /*MC
1779002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1780209238afSKris Buschelman 
1781209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1782209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1783209238afSKris Buschelman 
1784209238afSKris Buschelman    Options Database Keys:
1785209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1786209238afSKris Buschelman 
1787209238afSKris Buschelman   Level: beginner
1788209238afSKris Buschelman 
1789209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1790209238afSKris Buschelman M*/
1791209238afSKris Buschelman 
1792209238afSKris Buschelman EXTERN_C_BEGIN
1793209238afSKris Buschelman #undef __FUNCT__
1794209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1795be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1796dfbe8321SBarry Smith {
17976849ba73SBarry Smith   PetscErrorCode ierr;
17981302d50aSBarry Smith   PetscMPIInt    size;
1799209238afSKris Buschelman 
1800209238afSKris Buschelman   PetscFunctionBegin;
1801209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1802209238afSKris Buschelman   if (size == 1) {
1803209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1804209238afSKris Buschelman   } else {
1805209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1806209238afSKris Buschelman   }
1807209238afSKris Buschelman   PetscFunctionReturn(0);
1808209238afSKris Buschelman }
1809209238afSKris Buschelman EXTERN_C_END
1810209238afSKris Buschelman 
18114a2ae208SSatish Balay #undef __FUNCT__
18124a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1813b5df2d14SHong Zhang /*@C
1814b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1815b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1816b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1817b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1818b5df2d14SHong Zhang 
1819b5df2d14SHong Zhang    Collective on Mat
1820b5df2d14SHong Zhang 
1821b5df2d14SHong Zhang    Input Parameters:
1822b5df2d14SHong Zhang +  A - the matrix
1823b5df2d14SHong Zhang .  bs   - size of blockk
1824b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1825b5df2d14SHong Zhang            submatrix  (same for all local rows)
1826b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18276d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18286d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18296d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1830b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1831b5df2d14SHong Zhang            submatrix (same for all local rows).
1832b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1833b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1834b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1835b5df2d14SHong Zhang 
1836b5df2d14SHong Zhang 
1837b5df2d14SHong Zhang    Options Database Keys:
1838b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1839b5df2d14SHong Zhang                      block calculations (much slower)
1840b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1841b5df2d14SHong Zhang 
1842b5df2d14SHong Zhang    Notes:
1843b5df2d14SHong Zhang 
1844b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1845b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1846b5df2d14SHong Zhang 
184749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
184849a6f317SBarry Smith 
1849b5df2d14SHong Zhang    Storage Information:
1850b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1851b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1852b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1853b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1854b5df2d14SHong Zhang 
1855b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1856b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1857b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1858b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1859b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1860b5df2d14SHong Zhang 
1861b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1862b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang .vb
1865b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1866b5df2d14SHong Zhang           -------------------
1867b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1868b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1869b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1870b5df2d14SHong Zhang           -------------------
1871b5df2d14SHong Zhang .ve
1872b5df2d14SHong Zhang 
1873b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1874b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18756d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18766d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1877b5df2d14SHong Zhang 
18786d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18796d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1880b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1881b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1882b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1883b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1884b5df2d14SHong Zhang    matrices.
1885b5df2d14SHong Zhang 
1886b5df2d14SHong Zhang    Level: intermediate
1887b5df2d14SHong Zhang 
1888b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1889b5df2d14SHong Zhang 
1890b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1891b5df2d14SHong Zhang @*/
1892be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1893b5df2d14SHong Zhang {
18941302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1895b5df2d14SHong Zhang 
1896b5df2d14SHong Zhang   PetscFunctionBegin;
1897a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1898a23d5eceSKris Buschelman   if (f) {
1899a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1900b5df2d14SHong Zhang   }
1901b5df2d14SHong Zhang   PetscFunctionReturn(0);
1902b5df2d14SHong Zhang }
1903b5df2d14SHong Zhang 
19044a2ae208SSatish Balay #undef __FUNCT__
19054a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1906a30f8f8cSSatish Balay /*@C
1907a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1908a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1909a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1910a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1911a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1912a30f8f8cSSatish Balay 
1913a30f8f8cSSatish Balay    Collective on MPI_Comm
1914a30f8f8cSSatish Balay 
1915a30f8f8cSSatish Balay    Input Parameters:
1916a30f8f8cSSatish Balay +  comm - MPI communicator
1917a30f8f8cSSatish Balay .  bs   - size of blockk
1918a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1919a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1920a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1921a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1922a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1923a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1924a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1925a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1926a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1927a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1928a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19296d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19306d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19316d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1932a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1933a30f8f8cSSatish Balay            submatrix (same for all local rows).
1934a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1935a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1936a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1937a30f8f8cSSatish Balay 
1938a30f8f8cSSatish Balay    Output Parameter:
1939a30f8f8cSSatish Balay .  A - the matrix
1940a30f8f8cSSatish Balay 
1941a30f8f8cSSatish Balay    Options Database Keys:
1942a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1943a30f8f8cSSatish Balay                      block calculations (much slower)
1944a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1945a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1946a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1947a30f8f8cSSatish Balay 
1948a30f8f8cSSatish Balay    Notes:
1949d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19506d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1951d1be2dadSMatthew Knepley 
1952a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1953a30f8f8cSSatish Balay    (possibly both).
1954a30f8f8cSSatish Balay 
1955a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1956a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1957a30f8f8cSSatish Balay 
195849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
195949a6f317SBarry Smith 
1960a30f8f8cSSatish Balay    Storage Information:
1961a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1962a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1963a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1964a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1965a30f8f8cSSatish Balay 
1966a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1967a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1968a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1969a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1970a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1971a30f8f8cSSatish Balay 
1972a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1973a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1974a30f8f8cSSatish Balay 
1975a30f8f8cSSatish Balay .vb
1976a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1977a30f8f8cSSatish Balay           -------------------
1978a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1979a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1980a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1981a30f8f8cSSatish Balay           -------------------
1982a30f8f8cSSatish Balay .ve
1983a30f8f8cSSatish Balay 
1984a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1985a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19866d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19876d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1988a30f8f8cSSatish Balay 
19896d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19906d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1991a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1992a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1993a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1994a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1995a30f8f8cSSatish Balay    matrices.
1996a30f8f8cSSatish Balay 
1997a30f8f8cSSatish Balay    Level: intermediate
1998a30f8f8cSSatish Balay 
1999a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2000a30f8f8cSSatish Balay 
2001a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2002a30f8f8cSSatish Balay @*/
2003a30f8f8cSSatish Balay 
2004be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2005a30f8f8cSSatish Balay {
20066849ba73SBarry Smith   PetscErrorCode ierr;
20071302d50aSBarry Smith   PetscMPIInt    size;
2008a30f8f8cSSatish Balay 
2009a30f8f8cSSatish Balay   PetscFunctionBegin;
2010f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2011f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2012273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2013273d9f13SBarry Smith   if (size > 1) {
2014b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2015b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2016273d9f13SBarry Smith   } else {
2017273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2018273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2019273d9f13SBarry Smith   }
2020a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2021a30f8f8cSSatish Balay }
2022a30f8f8cSSatish Balay 
2023a30f8f8cSSatish Balay 
20244a2ae208SSatish Balay #undef __FUNCT__
20254a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20266849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2027a30f8f8cSSatish Balay {
2028a30f8f8cSSatish Balay   Mat            mat;
2029a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2030dfbe8321SBarry Smith   PetscErrorCode ierr;
2031899cda47SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs;
2032387bc808SHong Zhang   PetscScalar    *array;
2033a30f8f8cSSatish Balay 
2034a30f8f8cSSatish Balay   PetscFunctionBegin;
2035a30f8f8cSSatish Balay   *newmat       = 0;
2036f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2037899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2038be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20391d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2040899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2041899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2042e1b6402fSHong Zhang 
204382327fa8SHong Zhang   mat->factor       = matin->factor;
2044273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
204582327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20467fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20477fff6886SHong Zhang 
2048b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2049a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2050a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2051a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2052a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2053a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2054a30f8f8cSSatish Balay 
2055899cda47SBarry Smith 
2056a30f8f8cSSatish Balay   a->size         = oldmat->size;
2057a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2058a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2059a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2060a30f8f8cSSatish Balay   a->rowindices   = 0;
2061a30f8f8cSSatish Balay   a->rowvalues    = 0;
2062a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2063a30f8f8cSSatish Balay   a->barray       = 0;
2064899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2065899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2066899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2067899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2068a30f8f8cSSatish Balay 
2069a30f8f8cSSatish Balay   /* hash table stuff */
2070a30f8f8cSSatish Balay   a->ht           = 0;
2071a30f8f8cSSatish Balay   a->hd           = 0;
2072a30f8f8cSSatish Balay   a->ht_size      = 0;
2073a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2074a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2075a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2076a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2077a30f8f8cSSatish Balay 
2078899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2079a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2080899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
2081a30f8f8cSSatish Balay   if (oldmat->colmap) {
2082a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2083a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2084a30f8f8cSSatish Balay #else
20851302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
208652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20871302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2088a30f8f8cSSatish Balay #endif
2089a30f8f8cSSatish Balay   } else a->colmap = 0;
2090387bc808SHong Zhang 
2091a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20921302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
209352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20941302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2095a30f8f8cSSatish Balay   } else a->garray = 0;
2096a30f8f8cSSatish Balay 
2097a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
209852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2099a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
210052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
210182327fa8SHong Zhang 
210282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
210352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
210482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
210552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2106387bc808SHong Zhang 
2107387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21081ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2109387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2110387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21111ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21121ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2113387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21141ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
211552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
211652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
211752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
211852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
211952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2120387bc808SHong Zhang 
2121387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2122387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2123387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
212452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
212582327fa8SHong Zhang 
2126a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
212752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2128a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
212952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2130b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2131a30f8f8cSSatish Balay   *newmat = mat;
2132a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2133a30f8f8cSSatish Balay }
2134a30f8f8cSSatish Balay 
2135a30f8f8cSSatish Balay #include "petscsys.h"
2136a30f8f8cSSatish Balay 
21374a2ae208SSatish Balay #undef __FUNCT__
21384a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2139f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2140a30f8f8cSSatish Balay {
2141a30f8f8cSSatish Balay   Mat            A;
21426849ba73SBarry Smith   PetscErrorCode ierr;
214313f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
214487828ca2SBarry Smith   PetscScalar    *vals,*buf;
2145a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2146a30f8f8cSSatish Balay   MPI_Status     status;
21472fd7e33dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens;
214813f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21492fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21501302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21511302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21521302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
215313f74950SBarry Smith   int            fd;
2154a30f8f8cSSatish Balay 
2155a30f8f8cSSatish Balay   PetscFunctionBegin;
215677925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21578c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21588c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2159a30f8f8cSSatish Balay 
2160a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2161a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2162a30f8f8cSSatish Balay   if (!rank) {
2163b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2164a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2165552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2166a30f8f8cSSatish Balay     if (header[3] < 0) {
216729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2168a30f8f8cSSatish Balay     }
2169a30f8f8cSSatish Balay   }
2170a30f8f8cSSatish Balay 
2171a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2172a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2173a30f8f8cSSatish Balay 
217429bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2175a30f8f8cSSatish Balay 
2176a30f8f8cSSatish Balay   /*
2177a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2178a30f8f8cSSatish Balay      divisible by the blocksize
2179a30f8f8cSSatish Balay   */
2180a30f8f8cSSatish Balay   Mbs        = M/bs;
2181a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2182a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2183a30f8f8cSSatish Balay   else                  Mbs++;
2184a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2185ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2186a30f8f8cSSatish Balay   }
2187a30f8f8cSSatish Balay 
2188a30f8f8cSSatish Balay   /* determine ownership of all rows */
2189a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2190a30f8f8cSSatish Balay   m          = mbs*bs;
2191a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2192a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2193a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2194a30f8f8cSSatish Balay   rowners[0] = 0;
2195a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2196a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2197a30f8f8cSSatish Balay   rstart = rowners[rank];
2198a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2199a30f8f8cSSatish Balay 
2200a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22012fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2202a30f8f8cSSatish Balay   if (!rank) {
22031302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2204a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2205a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2206a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2207a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2208a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2209a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2210a30f8f8cSSatish Balay   } else {
2211a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay   }
2213a30f8f8cSSatish Balay 
22140222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2215a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22161302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22171302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2218a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2219a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2220a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2221a30f8f8cSSatish Balay       }
2222a30f8f8cSSatish Balay     }
2223a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2224a30f8f8cSSatish Balay 
2225a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2226a30f8f8cSSatish Balay     maxnz = 0;
2227a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2228a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2229a30f8f8cSSatish Balay     }
22301302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay 
2232a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2233a30f8f8cSSatish Balay     nz     = procsnz[0];
22341302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2235a30f8f8cSSatish Balay     mycols = ibuf;
2236a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2237a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2238a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2239a30f8f8cSSatish Balay 
2240a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2241a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2242a30f8f8cSSatish Balay       nz   = procsnz[i];
2243a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2244a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2245a30f8f8cSSatish Balay     }
2246a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2247a30f8f8cSSatish Balay     if (size != 1) {
2248a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2249a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2250a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2251a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2252a30f8f8cSSatish Balay     }
2253a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22540222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2255a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2256a30f8f8cSSatish Balay     nz = 0;
2257a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2258a30f8f8cSSatish Balay       nz += locrowlens[i];
2259a30f8f8cSSatish Balay     }
22601302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2261a30f8f8cSSatish Balay     mycols = ibuf;
2262a30f8f8cSSatish Balay     /* receive message of column indices*/
2263a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2264a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
226529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2266a30f8f8cSSatish Balay   }
2267a30f8f8cSSatish Balay 
2268a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22691302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2270a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22711302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22721302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2273a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2274a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2275a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2276a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2277a30f8f8cSSatish Balay     dcount  = 0;
2278a30f8f8cSSatish Balay     odcount = 0;
2279a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2280a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2281a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22820222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2283a30f8f8cSSatish Balay         if (!mask[tmp]) {
2284a30f8f8cSSatish Balay           mask[tmp] = 1;
22850222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22860222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2287a30f8f8cSSatish Balay         }
2288a30f8f8cSSatish Balay       }
2289a30f8f8cSSatish Balay       rowcount++;
2290a30f8f8cSSatish Balay     }
2291a30f8f8cSSatish Balay 
22920222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22930222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2294a30f8f8cSSatish Balay 
2295a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2296a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2297a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2298a30f8f8cSSatish Balay   }
2299a30f8f8cSSatish Balay 
2300a30f8f8cSSatish Balay   /* create our matrix */
2301f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2302f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
230322191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
230422191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2305*4e0d8c25SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED,PETSC_TRUE);CHKERRQ(ierr);
2306a30f8f8cSSatish Balay 
2307a30f8f8cSSatish Balay   if (!rank) {
230887828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2309a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2310a30f8f8cSSatish Balay     nz = procsnz[0];
2311a30f8f8cSSatish Balay     vals = buf;
2312a30f8f8cSSatish Balay     mycols = ibuf;
2313a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2314a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2315a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2316a30f8f8cSSatish Balay 
2317a30f8f8cSSatish Balay     /* insert into matrix */
2318a30f8f8cSSatish Balay     jj      = rstart*bs;
2319a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23207e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2321a30f8f8cSSatish Balay       mycols += locrowlens[i];
2322a30f8f8cSSatish Balay       vals   += locrowlens[i];
2323a30f8f8cSSatish Balay       jj++;
2324a30f8f8cSSatish Balay     }
23257e06b45fSHong Zhang 
2326a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2327a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2328a30f8f8cSSatish Balay       nz   = procsnz[i];
2329a30f8f8cSSatish Balay       vals = buf;
2330a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2331a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2332a30f8f8cSSatish Balay     }
2333a30f8f8cSSatish Balay     /* the last proc */
2334a30f8f8cSSatish Balay     if (size != 1){
2335a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2336a30f8f8cSSatish Balay       vals = buf;
2337a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2338a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2339a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2340a30f8f8cSSatish Balay     }
2341a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23427e06b45fSHong Zhang 
2343a30f8f8cSSatish Balay   } else {
2344a30f8f8cSSatish Balay     /* receive numeric values */
234587828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2346a30f8f8cSSatish Balay 
2347a30f8f8cSSatish Balay     /* receive message of values*/
2348a30f8f8cSSatish Balay     vals   = buf;
2349a30f8f8cSSatish Balay     mycols = ibuf;
2350a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2351a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
235229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2353a30f8f8cSSatish Balay 
2354a30f8f8cSSatish Balay     /* insert into matrix */
2355a30f8f8cSSatish Balay     jj      = rstart*bs;
2356a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2357a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2358a30f8f8cSSatish Balay       mycols += locrowlens[i];
2359a30f8f8cSSatish Balay       vals   += locrowlens[i];
2360a30f8f8cSSatish Balay       jj++;
2361a30f8f8cSSatish Balay     }
2362a30f8f8cSSatish Balay   }
23637e06b45fSHong Zhang 
2364a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2365a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2366a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2367a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2368a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2369a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2370a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2371a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
237222191285SKris Buschelman   *newmat = A;
2373a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2374a30f8f8cSSatish Balay }
2375a30f8f8cSSatish Balay 
23764a2ae208SSatish Balay #undef __FUNCT__
23774a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2378dcf5cc72SBarry Smith /*XXXXX@
2379a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2380a30f8f8cSSatish Balay 
2381a30f8f8cSSatish Balay    Input Parameters:
2382a30f8f8cSSatish Balay .  mat  - the matrix
2383a30f8f8cSSatish Balay .  fact - factor
2384a30f8f8cSSatish Balay 
2385a30f8f8cSSatish Balay    Collective on Mat
2386a30f8f8cSSatish Balay 
2387a30f8f8cSSatish Balay    Level: advanced
2388a30f8f8cSSatish Balay 
2389a30f8f8cSSatish Balay   Notes:
2390a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2391a30f8f8cSSatish Balay 
2392a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2393a30f8f8cSSatish Balay 
2394a30f8f8cSSatish Balay .seealso: MatSetOption()
2395dcf5cc72SBarry Smith @XXXXX*/
2396dcf5cc72SBarry Smith 
239724d5174aSHong Zhang 
23984a2ae208SSatish Balay #undef __FUNCT__
2399985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2400985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
240124d5174aSHong Zhang {
240224d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2403f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2404ca54ac64SHong Zhang   PetscReal      atmp;
240587828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2406dfbe8321SBarry Smith   PetscErrorCode ierr;
24071302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24081302d50aSBarry Smith   PetscMPIInt    rank,size;
24091302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
241087828ca2SBarry Smith   PetscScalar    *va;
24118a1c53f2SBarry Smith   MatScalar      *ba;
2412f4c0e9e4SHong Zhang   MPI_Status     stat;
241324d5174aSHong Zhang 
241424d5174aSHong Zhang   PetscFunctionBegin;
2415985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2416985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24171ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2418f4c0e9e4SHong Zhang 
241956faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
242056faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2421f4c0e9e4SHong Zhang 
2422899cda47SBarry Smith   bs   = A->rmap.bs;
2423f4c0e9e4SHong Zhang   mbs  = a->mbs;
2424f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2425f4c0e9e4SHong Zhang   ba   = b->a;
2426f4c0e9e4SHong Zhang   bi   = b->i;
2427f4c0e9e4SHong Zhang   bj   = b->j;
2428f4c0e9e4SHong Zhang 
2429f4c0e9e4SHong Zhang   /* find ownerships */
2430899cda47SBarry Smith   rowners_bs = A->rmap.range;
2431f4c0e9e4SHong Zhang 
2432f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
243382502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2434ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2435f4c0e9e4SHong Zhang 
2436f4c0e9e4SHong Zhang   /* row_max for B */
2437b8475685SHong Zhang   if (rank != size-1){
2438f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2439f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2440f4c0e9e4SHong Zhang       brow  = bs*i;
2441f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2442f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2443f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2444ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
244504d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2446f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2447f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2448ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2449ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2450f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2451f4c0e9e4SHong Zhang           }
2452f4c0e9e4SHong Zhang         }
2453f4c0e9e4SHong Zhang         bj++;
2454f4c0e9e4SHong Zhang       }
2455f4c0e9e4SHong Zhang     }
2456f4c0e9e4SHong Zhang 
2457f4c0e9e4SHong Zhang     /* send values to its owners */
2458f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2459f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2460ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
246156faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2462ca54ac64SHong Zhang     }
2463f4c0e9e4SHong Zhang   }
2464f4c0e9e4SHong Zhang 
2465f4c0e9e4SHong Zhang   /* receive values */
2466ca54ac64SHong Zhang   if (rank){
2467f4c0e9e4SHong Zhang     rvalues = work;
2468ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2469f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
247056faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2471f4c0e9e4SHong Zhang       /* process values */
2472f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2473ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2474f4c0e9e4SHong Zhang       }
2475f4c0e9e4SHong Zhang     }
2476ca54ac64SHong Zhang   }
2477f4c0e9e4SHong Zhang 
24781ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2479ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
248024d5174aSHong Zhang   PetscFunctionReturn(0);
248124d5174aSHong Zhang }
24822798e883SHong Zhang 
24832798e883SHong Zhang #undef __FUNCT__
24842798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
24851302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24862798e883SHong Zhang {
24872798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2488dfbe8321SBarry Smith   PetscErrorCode ierr;
2489899cda47SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap.bs;
2490efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2491ffe4fb16SHong Zhang   Vec            bb1;
2492ffe4fb16SHong Zhang 
2493ffe4fb16SHong Zhang   PetscFunctionBegin;
249477431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2495ffe4fb16SHong Zhang   if (bs > 1)
2496ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2497ffe4fb16SHong Zhang 
2498ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2499ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2500ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2501ffe4fb16SHong Zhang       its--;
2502ffe4fb16SHong Zhang     }
2503ffe4fb16SHong Zhang 
2504ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2505ffe4fb16SHong Zhang     while (its--){
2506ffe4fb16SHong Zhang 
2507ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2508ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2509ffe4fb16SHong Zhang 
2510ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25111ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25121ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2513ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25141ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2515ffe4fb16SHong Zhang 
2516efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2517ffe4fb16SHong Zhang 
2518ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25191ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25201ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2521ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25221ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2523ffe4fb16SHong Zhang 
2524ffe4fb16SHong Zhang       /* set slvec1b = 0 */
25252dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2526ffe4fb16SHong Zhang 
2527ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25281ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25291ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2530ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2531ffe4fb16SHong Zhang 
2532ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2533ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2534ffe4fb16SHong Zhang 
2535ffe4fb16SHong Zhang       /* local diagonal sweep */
2536ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2537ffe4fb16SHong Zhang     }
2538ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2539ffe4fb16SHong Zhang   } else {
2540ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2541ffe4fb16SHong Zhang   }
2542ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2543ffe4fb16SHong Zhang }
2544ffe4fb16SHong Zhang 
2545ffe4fb16SHong Zhang #undef __FUNCT__
2546ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25471302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2548ffe4fb16SHong Zhang {
2549ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2550dfbe8321SBarry Smith   PetscErrorCode ierr;
25512798e883SHong Zhang   Vec            lvec1,bb1;
25522798e883SHong Zhang 
25532798e883SHong Zhang   PetscFunctionBegin;
255477431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2555899cda47SBarry Smith   if (matin->rmap.bs > 1)
25562798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25572798e883SHong Zhang 
2558c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25592798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2560bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25612798e883SHong Zhang       its--;
25622798e883SHong Zhang     }
25632798e883SHong Zhang 
25642798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25652798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25662798e883SHong Zhang     while (its--){
2567ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25682798e883SHong Zhang 
25692798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25702798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2571efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
25722798e883SHong Zhang 
2573ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25742798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2575ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
25762798e883SHong Zhang 
25772798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2578efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
25792798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25802798e883SHong Zhang 
2581ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
25822798e883SHong Zhang 
2583c14dc6b6SHong Zhang       /* diagonal sweep */
2584bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25852798e883SHong Zhang     }
25862798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25872798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2588c14dc6b6SHong Zhang   } else {
2589c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2590c14dc6b6SHong Zhang   }
25912798e883SHong Zhang   PetscFunctionReturn(0);
25922798e883SHong Zhang }
25932798e883SHong Zhang 
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