1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 387087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 39a30f8f8cSSatish Balay { 40f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 41dfbe8321SBarry Smith PetscErrorCode ierr; 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay PetscFunctionBegin; 44a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 45a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 46a30f8f8cSSatish Balay PetscFunctionReturn(0); 47a30f8f8cSSatish Balay } 48a30f8f8cSSatish Balay 49a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 50a30f8f8cSSatish Balay { \ 51a30f8f8cSSatish Balay \ 52a30f8f8cSSatish Balay brow = row/bs; \ 53a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 54a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 55a30f8f8cSSatish Balay bcol = col/bs; \ 56a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 57a30f8f8cSSatish Balay low = 0; high = nrow; \ 58a30f8f8cSSatish Balay while (high-low > 3) { \ 59a30f8f8cSSatish Balay t = (low+high)/2; \ 60a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 61a30f8f8cSSatish Balay else low = t; \ 62a30f8f8cSSatish Balay } \ 63a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 64a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 65a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 66a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 67a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 68a30f8f8cSSatish Balay else *bap = value; \ 69a30f8f8cSSatish Balay goto a_noinsert; \ 70a30f8f8cSSatish Balay } \ 71a30f8f8cSSatish Balay } \ 72a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 73e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 74fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 75a30f8f8cSSatish Balay N = nrow++ - 1; \ 76a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 77a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 78a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 79a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 80a30f8f8cSSatish Balay } \ 81a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 82a30f8f8cSSatish Balay rp[_i] = bcol; \ 83a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 84e56f5c9eSBarry Smith A->nonzerostate++;\ 85a30f8f8cSSatish Balay a_noinsert:; \ 86a30f8f8cSSatish Balay ailen[brow] = nrow; \ 87a30f8f8cSSatish Balay } 88e5e170daSBarry Smith 89a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 90a30f8f8cSSatish Balay { \ 91a30f8f8cSSatish Balay brow = row/bs; \ 92a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 93a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 94a30f8f8cSSatish Balay bcol = col/bs; \ 95a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 96a30f8f8cSSatish Balay low = 0; high = nrow; \ 97a30f8f8cSSatish Balay while (high-low > 3) { \ 98a30f8f8cSSatish Balay t = (low+high)/2; \ 99a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 100a30f8f8cSSatish Balay else low = t; \ 101a30f8f8cSSatish Balay } \ 102a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 103a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 104a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 105a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 106a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 107a30f8f8cSSatish Balay else *bap = value; \ 108a30f8f8cSSatish Balay goto b_noinsert; \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay } \ 111a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 112e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 113fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 114a30f8f8cSSatish Balay N = nrow++ - 1; \ 115a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 116a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 117a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 118a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay } \ 120a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 121a30f8f8cSSatish Balay rp[_i] = bcol; \ 122a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 123e56f5c9eSBarry Smith B->nonzerostate++;\ 124a30f8f8cSSatish Balay b_noinsert:; \ 125a30f8f8cSSatish Balay bilen[brow] = nrow; \ 126a30f8f8cSSatish Balay } 127a30f8f8cSSatish Balay 128a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 129a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 130a30f8f8cSSatish Balay */ 1314a2ae208SSatish Balay #undef __FUNCT__ 132dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 133dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 134a30f8f8cSSatish Balay { 135a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 136a30f8f8cSSatish Balay MatScalar value; 137ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 138dfbe8321SBarry Smith PetscErrorCode ierr; 1391302d50aSBarry Smith PetscInt i,j,row,col; 140d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 141d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 142d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 143a30f8f8cSSatish Balay 144a30f8f8cSSatish Balay /* Some Variables required in the macro */ 145a30f8f8cSSatish Balay Mat A = baij->A; 146a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1471302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 148a30f8f8cSSatish Balay MatScalar *aa =a->a; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay Mat B = baij->B; 151a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1521302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 153a30f8f8cSSatish Balay MatScalar *ba =b->a; 154a30f8f8cSSatish Balay 1551302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1561302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 157a30f8f8cSSatish Balay MatScalar *ap,*bap; 158a30f8f8cSSatish Balay 159a30f8f8cSSatish Balay /* for stash */ 1600298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1610298fd71SBarry Smith MatScalar *v_loc = NULL; 162a30f8f8cSSatish Balay 163a30f8f8cSSatish Balay PetscFunctionBegin; 16471fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 165a30f8f8cSSatish Balay if (!baij->donotstash) { 16659ffdab8SBarry Smith if (n > baij->n_loc) { 16759ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 16859ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 169785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 170785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 17126fbe8dcSKarl Rupp 17259ffdab8SBarry Smith baij->n_loc = n; 17359ffdab8SBarry Smith } 17459ffdab8SBarry Smith in_loc = baij->in_loc; 17559ffdab8SBarry Smith v_loc = baij->v_loc; 176a30f8f8cSSatish Balay } 177a30f8f8cSSatish Balay 178a30f8f8cSSatish Balay for (i=0; i<m; i++) { 179a30f8f8cSSatish Balay if (im[i] < 0) continue; 1802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 181e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 182a30f8f8cSSatish Balay #endif 183a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 184a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 185a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18601b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 18701b2bd88SHong Zhang if (a->ignore_ltriangular) { 18801b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 18926fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19001b2bd88SHong Zhang } 191a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 192a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 193a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 194a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 195db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 196db4deed7SKarl Rupp else value = v[i+j*m]; 197a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 198a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 199a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 201cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 202a30f8f8cSSatish Balay #endif 203a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 204a30f8f8cSSatish Balay if (mat->was_assembled) { 205a30f8f8cSSatish Balay if (!baij->colmap) { 206ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 207a30f8f8cSSatish Balay } 208a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 209a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21071730473SSatish Balay col = col - 1; 211a30f8f8cSSatish Balay #else 21271730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 213a30f8f8cSSatish Balay #endif 214a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 215ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 216a30f8f8cSSatish Balay col = in[j]; 217a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 218a30f8f8cSSatish Balay B = baij->B; 219a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 220a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 221a30f8f8cSSatish Balay ba = b->a; 22271730473SSatish Balay } else col += in[j]%bs; 223a30f8f8cSSatish Balay } else col = in[j]; 224db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 225db4deed7SKarl Rupp else value = v[i+j*m]; 226a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 227a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay } 230a30f8f8cSSatish Balay } else { /* off processor entry */ 2314cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 232a30f8f8cSSatish Balay if (!baij->donotstash) { 2335080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 234a30f8f8cSSatish Balay n_loc = 0; 235a30f8f8cSSatish Balay for (j=0; j<n; j++) { 236f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 237a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 238a30f8f8cSSatish Balay if (roworiented) { 239a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 240a30f8f8cSSatish Balay } else { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 242a30f8f8cSSatish Balay } 243a30f8f8cSSatish Balay n_loc++; 244a30f8f8cSSatish Balay } 245b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay } 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay PetscFunctionReturn(0); 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay 2524a2ae208SSatish Balay #undef __FUNCT__ 253dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 254dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 255a30f8f8cSSatish Balay { 2560880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 257f15d580aSBarry Smith const MatScalar *value; 258f15d580aSBarry Smith MatScalar *barray =baij->barray; 259ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 260dfbe8321SBarry Smith PetscErrorCode ierr; 261899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 262899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 263d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2640880e062SHong Zhang 265a30f8f8cSSatish Balay PetscFunctionBegin; 2660880e062SHong Zhang if (!barray) { 267785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 2680880e062SHong Zhang baij->barray = barray; 2690880e062SHong Zhang } 2700880e062SHong Zhang 2710880e062SHong Zhang if (roworiented) { 2720880e062SHong Zhang stepval = (n-1)*bs; 2730880e062SHong Zhang } else { 2740880e062SHong Zhang stepval = (m-1)*bs; 2750880e062SHong Zhang } 2760880e062SHong Zhang for (i=0; i<m; i++) { 2770880e062SHong Zhang if (im[i] < 0) continue; 2782515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 279e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2800880e062SHong Zhang #endif 2810880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2820880e062SHong Zhang row = im[i] - rstart; 2830880e062SHong Zhang for (j=0; j<n; j++) { 284f3f98c53SJed Brown if (im[i] > in[j]) { 285f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 286e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 287f3f98c53SJed Brown } 2880880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2890880e062SHong Zhang if ((roworiented) && (n == 1)) { 290f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2910880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 292f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2930880e062SHong Zhang } else { /* Here a copy is required */ 2940880e062SHong Zhang if (roworiented) { 2950880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2960880e062SHong Zhang } else { 2970880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2980880e062SHong Zhang } 2990880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3000880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3010880e062SHong Zhang *barray++ = *value++; 3020880e062SHong Zhang } 3030880e062SHong Zhang } 3040880e062SHong Zhang barray -=bs2; 3050880e062SHong Zhang } 3060880e062SHong Zhang 3070880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 3080880e062SHong Zhang col = in[j] - cstart; 3090880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 31026fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3112515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 312cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3130880e062SHong Zhang #endif 3140880e062SHong Zhang else { 3150880e062SHong Zhang if (mat->was_assembled) { 3160880e062SHong Zhang if (!baij->colmap) { 317ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3180880e062SHong Zhang } 3190880e062SHong Zhang 3202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3210880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3221302d50aSBarry Smith { PetscInt data; 3230880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 324e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3250880e062SHong Zhang } 3260880e062SHong Zhang #else 327e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3280880e062SHong Zhang #endif 3290880e062SHong Zhang #endif 3300880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3310880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3320880e062SHong Zhang col = (col - 1)/bs; 3330880e062SHong Zhang #else 3340880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3350880e062SHong Zhang #endif 3360880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 337ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3380880e062SHong Zhang col = in[j]; 3390880e062SHong Zhang } 34026fbe8dcSKarl Rupp } else col = in[j]; 341e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3420880e062SHong Zhang } 3430880e062SHong Zhang } 3440880e062SHong Zhang } else { 3454cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3460880e062SHong Zhang if (!baij->donotstash) { 3470880e062SHong Zhang if (roworiented) { 3480880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3490880e062SHong Zhang } else { 3500880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3510880e062SHong Zhang } 3520880e062SHong Zhang } 3530880e062SHong Zhang } 3540880e062SHong Zhang } 3550880e062SHong Zhang PetscFunctionReturn(0); 356a30f8f8cSSatish Balay } 357a30f8f8cSSatish Balay 3584a2ae208SSatish Balay #undef __FUNCT__ 3594a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3601302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 361a30f8f8cSSatish Balay { 362f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3636849ba73SBarry Smith PetscErrorCode ierr; 364d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 365d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 366a30f8f8cSSatish Balay 367a30f8f8cSSatish Balay PetscFunctionBegin; 368a30f8f8cSSatish Balay for (i=0; i<m; i++) { 369e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 370e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 371a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 372a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 373a30f8f8cSSatish Balay for (j=0; j<n; j++) { 374e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 375e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 376a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 377a30f8f8cSSatish Balay col = idxn[j] - bscstart; 378c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 379a30f8f8cSSatish Balay } else { 380a30f8f8cSSatish Balay if (!baij->colmap) { 381ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 384a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 385a30f8f8cSSatish Balay data--; 386a30f8f8cSSatish Balay #else 387a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 388a30f8f8cSSatish Balay #endif 389a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 390a30f8f8cSSatish Balay else { 391a30f8f8cSSatish Balay col = data + idxn[j]%bs; 392e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } 396f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay PetscFunctionReturn(0); 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay 4014a2ae208SSatish Balay #undef __FUNCT__ 4024a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 403dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 404a30f8f8cSSatish Balay { 405a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 406dfbe8321SBarry Smith PetscErrorCode ierr; 407a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 408a30f8f8cSSatish Balay 409a30f8f8cSSatish Balay PetscFunctionBegin; 410a30f8f8cSSatish Balay if (baij->size == 1) { 411a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 412a30f8f8cSSatish Balay } else { 413a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 414785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 415a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 416a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 417a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 418a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 419ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4208f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 421a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4220b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4230b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4240b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4250b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 426899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 427d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4280b8dc8d2SHong Zhang MatScalar *v; 4290b8dc8d2SHong Zhang 430dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 431d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4320b8dc8d2SHong Zhang /* Amat */ 4330b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4340b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4350b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4360b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4370b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4380b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4390b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4400b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4410b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4420b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4430b8dc8d2SHong Zhang /* non-diagonal block */ 4440b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4450b8dc8d2SHong Zhang } 4460b8dc8d2SHong Zhang } 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang /* Bmat */ 4500b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4510b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4520b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4530b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4540b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4550b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4560b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4570b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4580b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4590b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4600b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4610b8dc8d2SHong Zhang } 4620b8dc8d2SHong Zhang } 4630b8dc8d2SHong Zhang } 4640b8dc8d2SHong Zhang } 465ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4660b8dc8d2SHong Zhang *norm = 0.0; 467d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4680b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4690b8dc8d2SHong Zhang } 47074ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 471f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 472a30f8f8cSSatish Balay } 473a30f8f8cSSatish Balay PetscFunctionReturn(0); 474a30f8f8cSSatish Balay } 475a30f8f8cSSatish Balay 4764a2ae208SSatish Balay #undef __FUNCT__ 4774a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 478dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 479a30f8f8cSSatish Balay { 480a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 481dfbe8321SBarry Smith PetscErrorCode ierr; 4821302d50aSBarry Smith PetscInt nstash,reallocs; 483a30f8f8cSSatish Balay InsertMode addv; 484a30f8f8cSSatish Balay 485a30f8f8cSSatish Balay PetscFunctionBegin; 48626fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 487a30f8f8cSSatish Balay 488a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 489ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 490ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 491a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 492a30f8f8cSSatish Balay 493d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4941e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 495a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4961e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 497a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4981e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 499a30f8f8cSSatish Balay PetscFunctionReturn(0); 500a30f8f8cSSatish Balay } 501a30f8f8cSSatish Balay 5024a2ae208SSatish Balay #undef __FUNCT__ 5034a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 504dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 505a30f8f8cSSatish Balay { 506a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 507a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 5086849ba73SBarry Smith PetscErrorCode ierr; 50913f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 510e44c0bd4SBarry Smith PetscInt *row,*col; 511ace3abfcSBarry Smith PetscBool other_disassembled; 51213f74950SBarry Smith PetscMPIInt n; 513ace3abfcSBarry Smith PetscBool r1,r2,r3; 514a30f8f8cSSatish Balay MatScalar *val; 515a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 516a30f8f8cSSatish Balay 51791c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 518a30f8f8cSSatish Balay PetscFunctionBegin; 5194cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 520a30f8f8cSSatish Balay while (1) { 521a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 522a30f8f8cSSatish Balay if (!flg) break; 523a30f8f8cSSatish Balay 524a30f8f8cSSatish Balay for (i=0; i<n;) { 525a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 52626fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 52726fbe8dcSKarl Rupp if (row[j] != rstart) break; 52826fbe8dcSKarl Rupp } 529a30f8f8cSSatish Balay if (j < n) ncols = j-i; 530a30f8f8cSSatish Balay else ncols = n-i; 531a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 532dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 533a30f8f8cSSatish Balay i = j; 534a30f8f8cSSatish Balay } 535a30f8f8cSSatish Balay } 536a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 537a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 538a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 539a30f8f8cSSatish Balay restore the original flags */ 540a30f8f8cSSatish Balay r1 = baij->roworiented; 541a30f8f8cSSatish Balay r2 = a->roworiented; 54291c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 54326fbe8dcSKarl Rupp 544a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 545a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 54626fbe8dcSKarl Rupp 54791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 548a30f8f8cSSatish Balay while (1) { 549a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 550a30f8f8cSSatish Balay if (!flg) break; 551a30f8f8cSSatish Balay 552a30f8f8cSSatish Balay for (i=0; i<n;) { 553a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 55426fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 55526fbe8dcSKarl Rupp if (row[j] != rstart) break; 55626fbe8dcSKarl Rupp } 557a30f8f8cSSatish Balay if (j < n) ncols = j-i; 558a30f8f8cSSatish Balay else ncols = n-i; 559dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 560a30f8f8cSSatish Balay i = j; 561a30f8f8cSSatish Balay } 562a30f8f8cSSatish Balay } 563a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 56426fbe8dcSKarl Rupp 565a30f8f8cSSatish Balay baij->roworiented = r1; 566a30f8f8cSSatish Balay a->roworiented = r2; 56726fbe8dcSKarl Rupp 56891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay 571a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 572a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 573a30f8f8cSSatish Balay 574a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 575a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 576a30f8f8cSSatish Balay /* 577a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 578a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 579a30f8f8cSSatish Balay */ 580a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 581ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 582a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 583ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 584a30f8f8cSSatish Balay } 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay 587a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58840781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 591a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 592a30f8f8cSSatish Balay 59374ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 59426fbe8dcSKarl Rupp 595a30f8f8cSSatish Balay baij->rowvalues = 0; 596*4f9cfa9eSBarry Smith 597*4f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 598*4f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 599e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 60009e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 601e56f5c9eSBarry Smith } 602a30f8f8cSSatish Balay PetscFunctionReturn(0); 603a30f8f8cSSatish Balay } 604a30f8f8cSSatish Balay 605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6069804daf3SBarry Smith #include <petscdraw.h> 6074a2ae208SSatish Balay #undef __FUNCT__ 6084a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6096849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 610a30f8f8cSSatish Balay { 611a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 612dfbe8321SBarry Smith PetscErrorCode ierr; 613d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6141302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 615ace3abfcSBarry Smith PetscBool iascii,isdraw; 616b0a32e0cSBarry Smith PetscViewer sviewer; 617f3ef73ceSBarry Smith PetscViewerFormat format; 618a30f8f8cSSatish Balay 619a30f8f8cSSatish Balay PetscFunctionBegin; 620251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 621251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 62232077d6dSBarry Smith if (iascii) { 623b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 624456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 625a30f8f8cSSatish Balay MatInfo info; 626ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 627a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6287b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6297b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 631e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 632a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 633e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 634b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6357b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 63607d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 637a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 638a30f8f8cSSatish Balay PetscFunctionReturn(0); 639fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 64077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 641a30f8f8cSSatish Balay PetscFunctionReturn(0); 642c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 643c1490034SHong Zhang PetscFunctionReturn(0); 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay 647a30f8f8cSSatish Balay if (isdraw) { 648b0a32e0cSBarry Smith PetscDraw draw; 649ace3abfcSBarry Smith PetscBool isnull; 650b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 651b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 652a30f8f8cSSatish Balay } 653a30f8f8cSSatish Balay 654a30f8f8cSSatish Balay if (size == 1) { 6557adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 656a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 657a30f8f8cSSatish Balay } else { 658a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 659a30f8f8cSSatish Balay Mat A; 66065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 66165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 662d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 663a30f8f8cSSatish Balay MatScalar *a; 664a30f8f8cSSatish Balay 665f204ca49SKris Buschelman /* Should this be the same type as mat? */ 666ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 667a30f8f8cSSatish Balay if (!rank) { 668f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 669a30f8f8cSSatish Balay } else { 670f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 671a30f8f8cSSatish Balay } 672f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6730298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6742b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 676a30f8f8cSSatish Balay 677a30f8f8cSSatish Balay /* copy over the A part */ 67865d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 679a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 680785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 681a30f8f8cSSatish Balay 682a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 683e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 68426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 685a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 686e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 687a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 688dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 68926fbe8dcSKarl Rupp col++; 69026fbe8dcSKarl Rupp a += bs; 691a30f8f8cSSatish Balay } 692a30f8f8cSSatish Balay } 693a30f8f8cSSatish Balay } 694a30f8f8cSSatish Balay /* copy over the B part */ 69565d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69665d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 697a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 698e9f7bc9eSHong Zhang 699e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 70026fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 701a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 702a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 703a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 704799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 70526fbe8dcSKarl Rupp col++; 70626fbe8dcSKarl Rupp a += bs; 707a30f8f8cSSatish Balay } 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 711a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 713a30f8f8cSSatish Balay /* 714a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 715b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 716a30f8f8cSSatish Balay */ 717b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71865d70643SHong Zhang if (!rank) { 7197adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7207566de4bSShri Abhyankar /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/ 721dd2fa690SBarry Smith ierr = PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ);CHKERRQ(ierr); 722a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 723a30f8f8cSSatish Balay } 724b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7256bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 726a30f8f8cSSatish Balay } 727a30f8f8cSSatish Balay PetscFunctionReturn(0); 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 7304a2ae208SSatish Balay #undef __FUNCT__ 7314a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 732dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 733a30f8f8cSSatish Balay { 734dfbe8321SBarry Smith PetscErrorCode ierr; 735ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay PetscFunctionBegin; 738251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 739251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 740251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 741251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 74232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 743a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay PetscFunctionReturn(0); 746a30f8f8cSSatish Balay } 747a30f8f8cSSatish Balay 7484a2ae208SSatish Balay #undef __FUNCT__ 7494a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 750dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 751a30f8f8cSSatish Balay { 752a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 753dfbe8321SBarry Smith PetscErrorCode ierr; 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay PetscFunctionBegin; 756a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 757d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 758a30f8f8cSSatish Balay #endif 759a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 760a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7616bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7626bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 763a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7646bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 765a30f8f8cSSatish Balay #else 76605b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 767a30f8f8cSSatish Balay #endif 76805b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7706bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7716bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7726bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7736bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7746bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7756bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7766bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7775755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77805b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77905b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7806bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7816bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7826bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 783ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 78405b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 785a30f8f8cSSatish Balay #endif 78659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 788899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 789bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 790901853e0SKris Buschelman 791dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 792bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 793bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 794bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 795bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 796bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 797a30f8f8cSSatish Balay PetscFunctionReturn(0); 798a30f8f8cSSatish Balay } 799a30f8f8cSSatish Balay 8004a2ae208SSatish Balay #undef __FUNCT__ 801547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 802547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 803547795f9SHong Zhang { 804547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 805547795f9SHong Zhang PetscErrorCode ierr; 806547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 807547795f9SHong Zhang PetscScalar *x,*from; 808547795f9SHong Zhang 809547795f9SHong Zhang PetscFunctionBegin; 810547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 811e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 812547795f9SHong Zhang 813547795f9SHong Zhang /* diagonal part */ 814547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 815547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 816547795f9SHong Zhang 817547795f9SHong Zhang /* subdiagonal part */ 818547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 819547795f9SHong Zhang 820547795f9SHong Zhang /* copy x into the vec slvec0 */ 821547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 823547795f9SHong Zhang 824547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 825547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 826547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 827547795f9SHong Zhang 828547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 829547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 830547795f9SHong Zhang /* supperdiagonal part */ 831547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 832547795f9SHong Zhang PetscFunctionReturn(0); 833547795f9SHong Zhang } 834547795f9SHong Zhang 835547795f9SHong Zhang #undef __FUNCT__ 836a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 837dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 838a9d4b620SHong Zhang { 839a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 840dfbe8321SBarry Smith PetscErrorCode ierr; 841d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 842fa22f6d0SBarry Smith PetscScalar *x,*from; 843a9d4b620SHong Zhang 844a9d4b620SHong Zhang PetscFunctionBegin; 845a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 846e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 847a9d4b620SHong Zhang 848a9d4b620SHong Zhang /* diagonal part */ 849a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 850fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 851a9d4b620SHong Zhang 852a9d4b620SHong Zhang /* subdiagonal part */ 853a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 854fc165ae2SBarry Smith 855a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8561ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8571ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 858a9d4b620SHong Zhang 859fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 860fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8611ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 862fc165ae2SBarry Smith 863fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 864ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 865a9d4b620SHong Zhang /* supperdiagonal part */ 866a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 867a9d4b620SHong Zhang PetscFunctionReturn(0); 868a9d4b620SHong Zhang } 869a9d4b620SHong Zhang 870a9d4b620SHong Zhang #undef __FUNCT__ 87140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 872dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 873a30f8f8cSSatish Balay { 874a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 875dfbe8321SBarry Smith PetscErrorCode ierr; 8761302d50aSBarry Smith PetscInt nt; 877a30f8f8cSSatish Balay 878a30f8f8cSSatish Balay PetscFunctionBegin; 879a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 880e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 881e7e72b3dSBarry Smith 882a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 883e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88465d70643SHong Zhang 885ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 886b941877fSHong Zhang /* do diagonal part */ 887b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 888b941877fSHong Zhang /* do supperdiagonal part */ 889ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 890b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 891b941877fSHong Zhang /* do subdiagonal part */ 892b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 893ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 894ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 895a30f8f8cSSatish Balay PetscFunctionReturn(0); 896a30f8f8cSSatish Balay } 897a30f8f8cSSatish Balay 8984a2ae208SSatish Balay #undef __FUNCT__ 8994a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 900dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 901a30f8f8cSSatish Balay { 902de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 903dfbe8321SBarry Smith PetscErrorCode ierr; 904d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 905a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 906a9d4b620SHong Zhang 907a9d4b620SHong Zhang PetscFunctionBegin; 908a9d4b620SHong Zhang /* 909ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 9100ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 911a9d4b620SHong Zhang */ 912a9d4b620SHong Zhang /* diagonal part */ 913a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9142dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 915a9d4b620SHong Zhang 916a9d4b620SHong Zhang /* subdiagonal part */ 917a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 918a9d4b620SHong Zhang 919a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9201ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9211ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 922a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9231ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 924a9d4b620SHong Zhang 925ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9261ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 927ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 928a9d4b620SHong Zhang 929a9d4b620SHong Zhang /* supperdiagonal part */ 930a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 931a9d4b620SHong Zhang PetscFunctionReturn(0); 932a9d4b620SHong Zhang } 933a9d4b620SHong Zhang 934a9d4b620SHong Zhang #undef __FUNCT__ 935a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 936dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 937a9d4b620SHong Zhang { 938a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 939dfbe8321SBarry Smith PetscErrorCode ierr; 940a30f8f8cSSatish Balay 941a30f8f8cSSatish Balay PetscFunctionBegin; 942ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 943b941877fSHong Zhang /* do diagonal part */ 944b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 945b941877fSHong Zhang /* do supperdiagonal part */ 946ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 947de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 948de8b6608SHong Zhang 949b941877fSHong Zhang /* do subdiagonal part */ 950a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 951ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 952ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 953a30f8f8cSSatish Balay PetscFunctionReturn(0); 954a30f8f8cSSatish Balay } 955a30f8f8cSSatish Balay 956a30f8f8cSSatish Balay /* 957a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 958a30f8f8cSSatish Balay diagonal block 959a30f8f8cSSatish Balay */ 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 963a30f8f8cSSatish Balay { 964a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 965dfbe8321SBarry Smith PetscErrorCode ierr; 966a30f8f8cSSatish Balay 967a30f8f8cSSatish Balay PetscFunctionBegin; 968e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 969a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 970a30f8f8cSSatish Balay PetscFunctionReturn(0); 971a30f8f8cSSatish Balay } 972a30f8f8cSSatish Balay 9734a2ae208SSatish Balay #undef __FUNCT__ 9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 976a30f8f8cSSatish Balay { 977a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 978dfbe8321SBarry Smith PetscErrorCode ierr; 979a30f8f8cSSatish Balay 980a30f8f8cSSatish Balay PetscFunctionBegin; 981f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 982f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 983a30f8f8cSSatish Balay PetscFunctionReturn(0); 984a30f8f8cSSatish Balay } 985a30f8f8cSSatish Balay 9864a2ae208SSatish Balay #undef __FUNCT__ 9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 989a30f8f8cSSatish Balay { 990d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 991d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 992d0d4cfc2SHong Zhang PetscErrorCode ierr; 993d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 994d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 995899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 996d0d4cfc2SHong Zhang 997a30f8f8cSSatish Balay PetscFunctionBegin; 998e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 999d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1000d0d4cfc2SHong Zhang 1001d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1002d0d4cfc2SHong Zhang /* 1003d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1004d0d4cfc2SHong Zhang */ 1005d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1006d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1007d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1008d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1009d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 101026fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1011d0d4cfc2SHong Zhang } 1012dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1013d0d4cfc2SHong Zhang } 1014d0d4cfc2SHong Zhang 1015e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1016d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1017d0d4cfc2SHong Zhang 1018d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1019d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1020d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1021d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1022d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1023d0d4cfc2SHong Zhang nztot = nzA + nzB; 1024d0d4cfc2SHong Zhang 1025d0d4cfc2SHong Zhang cmap = mat->garray; 1026d0d4cfc2SHong Zhang if (v || idx) { 1027d0d4cfc2SHong Zhang if (nztot) { 1028d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1029d0d4cfc2SHong Zhang PetscInt imark = -1; 1030d0d4cfc2SHong Zhang if (v) { 1031d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1032d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1033d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1034d0d4cfc2SHong Zhang else break; 1035d0d4cfc2SHong Zhang } 1036d0d4cfc2SHong Zhang imark = i; 1037d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1038d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1039d0d4cfc2SHong Zhang } 1040d0d4cfc2SHong Zhang if (idx) { 1041d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1042d0d4cfc2SHong Zhang if (imark > -1) { 1043d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1044d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang } else { 1047d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 104826fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1049d0d4cfc2SHong Zhang else break; 1050d0d4cfc2SHong Zhang } 1051d0d4cfc2SHong Zhang imark = i; 1052d0d4cfc2SHong Zhang } 1053d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1054d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang } else { 1057d0d4cfc2SHong Zhang if (idx) *idx = 0; 1058d0d4cfc2SHong Zhang if (v) *v = 0; 1059d0d4cfc2SHong Zhang } 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang *nz = nztot; 1062d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1063d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1064a30f8f8cSSatish Balay PetscFunctionReturn(0); 1065a30f8f8cSSatish Balay } 1066a30f8f8cSSatish Balay 10674a2ae208SSatish Balay #undef __FUNCT__ 10684a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10691302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1070a30f8f8cSSatish Balay { 1071a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1072a30f8f8cSSatish Balay 1073a30f8f8cSSatish Balay PetscFunctionBegin; 1074e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1075a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1076a30f8f8cSSatish Balay PetscFunctionReturn(0); 1077a30f8f8cSSatish Balay } 1078a30f8f8cSSatish Balay 10794a2ae208SSatish Balay #undef __FUNCT__ 1080d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1081d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1082d0d4cfc2SHong Zhang { 1083d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1084d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1085d0d4cfc2SHong Zhang 1086d0d4cfc2SHong Zhang PetscFunctionBegin; 1087d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1088d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1089d0d4cfc2SHong Zhang } 1090d0d4cfc2SHong Zhang #undef __FUNCT__ 1091d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1092d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1093d0d4cfc2SHong Zhang { 1094d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1095d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1096d0d4cfc2SHong Zhang 1097d0d4cfc2SHong Zhang PetscFunctionBegin; 1098d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1099d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1100d0d4cfc2SHong Zhang } 1101d0d4cfc2SHong Zhang 1102d0d4cfc2SHong Zhang #undef __FUNCT__ 110399cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110499cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110599cafbc1SBarry Smith { 110699cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110799cafbc1SBarry Smith PetscErrorCode ierr; 110899cafbc1SBarry Smith 110999cafbc1SBarry Smith PetscFunctionBegin; 111099cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111199cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111299cafbc1SBarry Smith PetscFunctionReturn(0); 111399cafbc1SBarry Smith } 111499cafbc1SBarry Smith 111599cafbc1SBarry Smith #undef __FUNCT__ 111699cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111899cafbc1SBarry Smith { 111999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112099cafbc1SBarry Smith PetscErrorCode ierr; 112199cafbc1SBarry Smith 112299cafbc1SBarry Smith PetscFunctionBegin; 112399cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112499cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112599cafbc1SBarry Smith PetscFunctionReturn(0); 112699cafbc1SBarry Smith } 112799cafbc1SBarry Smith 112899cafbc1SBarry Smith #undef __FUNCT__ 11294a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1130dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1131a30f8f8cSSatish Balay { 1132a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1133dfbe8321SBarry Smith PetscErrorCode ierr; 1134a30f8f8cSSatish Balay 1135a30f8f8cSSatish Balay PetscFunctionBegin; 1136a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay PetscFunctionReturn(0); 1139a30f8f8cSSatish Balay } 1140a30f8f8cSSatish Balay 11414a2ae208SSatish Balay #undef __FUNCT__ 11424a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1143dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1144a30f8f8cSSatish Balay { 1145a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1146a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1147dfbe8321SBarry Smith PetscErrorCode ierr; 1148a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1149a30f8f8cSSatish Balay 1150a30f8f8cSSatish Balay PetscFunctionBegin; 1151d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 115226fbe8dcSKarl Rupp 1153a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 115426fbe8dcSKarl Rupp 1155a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1156a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 115726fbe8dcSKarl Rupp 1158a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 115926fbe8dcSKarl Rupp 1160a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1161a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1162a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1163a30f8f8cSSatish Balay info->nz_used = isend[0]; 1164a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1165a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1166a30f8f8cSSatish Balay info->memory = isend[3]; 1167a30f8f8cSSatish Balay info->mallocs = isend[4]; 1168a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1169ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 117026fbe8dcSKarl Rupp 1171a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1172a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1173a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1174a30f8f8cSSatish Balay info->memory = irecv[3]; 1175a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1176a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1177ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 117826fbe8dcSKarl Rupp 1179a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1180a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1181a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1182a30f8f8cSSatish Balay info->memory = irecv[3]; 1183a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1184f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1185a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1186a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1187a30f8f8cSSatish Balay info->factor_mallocs = 0; 1188a30f8f8cSSatish Balay PetscFunctionReturn(0); 1189a30f8f8cSSatish Balay } 1190a30f8f8cSSatish Balay 11914a2ae208SSatish Balay #undef __FUNCT__ 11924a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1193ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1194a30f8f8cSSatish Balay { 1195a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1196d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1197dfbe8321SBarry Smith PetscErrorCode ierr; 1198a30f8f8cSSatish Balay 1199a30f8f8cSSatish Balay PetscFunctionBegin; 1200e98b92d7SKris Buschelman switch (op) { 1201512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1202e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 120328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1204a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1205e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12064e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12074e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1208e98b92d7SKris Buschelman break; 1209e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12104e0d8c25SBarry Smith a->roworiented = flg; 121126fbe8dcSKarl Rupp 12124e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12134e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1214e98b92d7SKris Buschelman break; 12154e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1216290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1217e98b92d7SKris Buschelman break; 1218e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12194e0d8c25SBarry Smith a->donotstash = flg; 1220e98b92d7SKris Buschelman break; 1221e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12224e0d8c25SBarry Smith a->ht_flag = flg; 1223e98b92d7SKris Buschelman break; 12249a4540c5SBarry Smith case MAT_HERMITIAN: 1225e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1226eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 122726fbe8dcSKarl Rupp 1228547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1229eeffb40dSHong Zhang break; 1230ffa07934SHong Zhang case MAT_SPD: 1231ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1232ffa07934SHong Zhang A->spd = flg; 1233ffa07934SHong Zhang if (flg) { 1234ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1235ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1236ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1237ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1238ffa07934SHong Zhang } 1239ffa07934SHong Zhang break; 124077e54ba9SKris Buschelman case MAT_SYMMETRIC: 1241eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1242eeffb40dSHong Zhang break; 124377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1244eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1245eeffb40dSHong Zhang break; 12469a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1247e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1248290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124977e54ba9SKris Buschelman break; 1250d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12514e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1252d0d4cfc2SHong Zhang break; 1253d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12544e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1255d0d4cfc2SHong Zhang break; 1256d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12574e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1258d0d4cfc2SHong Zhang break; 1259e98b92d7SKris Buschelman default: 1260e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1261a30f8f8cSSatish Balay } 1262a30f8f8cSSatish Balay PetscFunctionReturn(0); 1263a30f8f8cSSatish Balay } 1264a30f8f8cSSatish Balay 12654a2ae208SSatish Balay #undef __FUNCT__ 12668115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1267fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1268a30f8f8cSSatish Balay { 1269dfbe8321SBarry Smith PetscErrorCode ierr; 12706e111a19SKarl Rupp 1271a30f8f8cSSatish Balay PetscFunctionBegin; 1272815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1273999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1274fc4dec0aSBarry Smith } 12758115998fSBarry Smith PetscFunctionReturn(0); 1276a30f8f8cSSatish Balay } 1277a30f8f8cSSatish Balay 12784a2ae208SSatish Balay #undef __FUNCT__ 12794a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1280dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1281a30f8f8cSSatish Balay { 1282a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1283a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1284dfbe8321SBarry Smith PetscErrorCode ierr; 12855e90f9d9SHong Zhang PetscInt nv,m,n; 1286ace3abfcSBarry Smith PetscBool flg; 1287a30f8f8cSSatish Balay 1288a30f8f8cSSatish Balay PetscFunctionBegin; 1289a30f8f8cSSatish Balay if (ll != rr) { 1290b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1291e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1292a30f8f8cSSatish Balay } 1293b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1294b3bf805bSHong Zhang 12955e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1296e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1297b3bf805bSHong Zhang 12985e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1299e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13005e90f9d9SHong Zhang 1301ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13025e90f9d9SHong Zhang 13035e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 13040298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 13055e90f9d9SHong Zhang 13065e90f9d9SHong Zhang /* scale the diagonal part */ 1307a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1308a30f8f8cSSatish Balay 13095e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1310ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13110298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1312a30f8f8cSSatish Balay PetscFunctionReturn(0); 1313a30f8f8cSSatish Balay } 1314a30f8f8cSSatish Balay 13154a2ae208SSatish Balay #undef __FUNCT__ 13164a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1317dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1318a30f8f8cSSatish Balay { 1319f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1320dfbe8321SBarry Smith PetscErrorCode ierr; 1321a30f8f8cSSatish Balay 1322a30f8f8cSSatish Balay PetscFunctionBegin; 1323a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1324a30f8f8cSSatish Balay PetscFunctionReturn(0); 1325a30f8f8cSSatish Balay } 1326a30f8f8cSSatish Balay 13276849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1328a30f8f8cSSatish Balay 13294a2ae208SSatish Balay #undef __FUNCT__ 13304a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1331ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1332a30f8f8cSSatish Balay { 1333a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1334a30f8f8cSSatish Balay Mat a,b,c,d; 1335ace3abfcSBarry Smith PetscBool flg; 1336dfbe8321SBarry Smith PetscErrorCode ierr; 1337a30f8f8cSSatish Balay 1338a30f8f8cSSatish Balay PetscFunctionBegin; 1339a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1340a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1341a30f8f8cSSatish Balay 1342a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1343abc0a331SBarry Smith if (flg) { 1344a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1345a30f8f8cSSatish Balay } 1346ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1347a30f8f8cSSatish Balay PetscFunctionReturn(0); 1348a30f8f8cSSatish Balay } 1349a30f8f8cSSatish Balay 13504a2ae208SSatish Balay #undef __FUNCT__ 13513c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13523c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13533c896bc6SHong Zhang { 13543c896bc6SHong Zhang PetscErrorCode ierr; 13553c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 13563c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 13573c896bc6SHong Zhang 13583c896bc6SHong Zhang PetscFunctionBegin; 13593c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13603c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1361d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13623c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1363d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13643c896bc6SHong Zhang } else { 13653c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13663c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13673c896bc6SHong Zhang } 13683c896bc6SHong Zhang PetscFunctionReturn(0); 13693c896bc6SHong Zhang } 13703c896bc6SHong Zhang 13713c896bc6SHong Zhang #undef __FUNCT__ 13724994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 13734994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1374273d9f13SBarry Smith { 1375dfbe8321SBarry Smith PetscErrorCode ierr; 1376273d9f13SBarry Smith 1377273d9f13SBarry Smith PetscFunctionBegin; 1378535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1379273d9f13SBarry Smith PetscFunctionReturn(0); 1380273d9f13SBarry Smith } 1381a5e6ed63SBarry Smith 13824fe895cdSHong Zhang #undef __FUNCT__ 13834fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13844fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13854fe895cdSHong Zhang { 13864fe895cdSHong Zhang PetscErrorCode ierr; 13874fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 13884fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13894fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13904fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13914fe895cdSHong Zhang 13924fe895cdSHong Zhang PetscFunctionBegin; 13934fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13944fe895cdSHong Zhang PetscScalar alpha = a; 13954fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 13964fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1397c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 13988b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 13994fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 14004fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1401c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 14028b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 14034fe895cdSHong Zhang } else { 1404d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14054fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1406d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14074fe895cdSHong Zhang } 14084fe895cdSHong Zhang PetscFunctionReturn(0); 14094fe895cdSHong Zhang } 14104fe895cdSHong Zhang 1411a5e6ed63SBarry Smith #undef __FUNCT__ 1412a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14131302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1414a5e6ed63SBarry Smith { 14156849ba73SBarry Smith PetscErrorCode ierr; 14161302d50aSBarry Smith PetscInt i; 1417ace3abfcSBarry Smith PetscBool flg; 1418a5e6ed63SBarry Smith 14196849ba73SBarry Smith PetscFunctionBegin; 1420a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1421a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1422e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1423a5e6ed63SBarry Smith } 1424a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1425a5e6ed63SBarry Smith PetscFunctionReturn(0); 1426a5e6ed63SBarry Smith } 1427a5e6ed63SBarry Smith 1428a5e6ed63SBarry Smith 1429a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 14303964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1431a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1432a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1433a9d4b620SHong Zhang MatMult_MPISBAIJ, 143497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1435431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1436431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1437a30f8f8cSSatish Balay 0, 1438a30f8f8cSSatish Balay 0, 1439a30f8f8cSSatish Balay 0, 144097304618SKris Buschelman /* 10*/ 0, 1441a30f8f8cSSatish Balay 0, 1442a30f8f8cSSatish Balay 0, 144341f059aeSBarry Smith MatSOR_MPISBAIJ, 1444a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 144597304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1446a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1447a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1448a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1449a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 145097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1451a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1452a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1453a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1454d519adbfSMatthew Knepley /* 24*/ 0, 1455a30f8f8cSSatish Balay 0, 1456a30f8f8cSSatish Balay 0, 1457a30f8f8cSSatish Balay 0, 1458a30f8f8cSSatish Balay 0, 14594994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1460b5df2d14SHong Zhang 0, 1461a30f8f8cSSatish Balay 0, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 1464d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1465a30f8f8cSSatish Balay 0, 1466a30f8f8cSSatish Balay 0, 1467a30f8f8cSSatish Balay 0, 1468a30f8f8cSSatish Balay 0, 1469d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1470a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1471d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1472a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14733c896bc6SHong Zhang MatCopy_MPISBAIJ, 1474d519adbfSMatthew Knepley /* 44*/ 0, 1475a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1476a30f8f8cSSatish Balay 0, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479f73d5cc4SBarry Smith /* 49*/ 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484d519adbfSMatthew Knepley /* 54*/ 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1487a30f8f8cSSatish Balay 0, 1488a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1489d519adbfSMatthew Knepley /* 59*/ 0, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 1492357abbc8SBarry Smith 0, 149324d5174aSHong Zhang 0, 1494d519adbfSMatthew Knepley /* 64*/ 0, 149524d5174aSHong Zhang 0, 149624d5174aSHong Zhang 0, 149724d5174aSHong Zhang 0, 149824d5174aSHong Zhang 0, 1499d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 150024d5174aSHong Zhang 0, 150197304618SKris Buschelman 0, 150297304618SKris Buschelman 0, 150397304618SKris Buschelman 0, 1504d519adbfSMatthew Knepley /* 74*/ 0, 150597304618SKris Buschelman 0, 150697304618SKris Buschelman 0, 150797304618SKris Buschelman 0, 150897304618SKris Buschelman 0, 1509d519adbfSMatthew Knepley /* 79*/ 0, 151097304618SKris Buschelman 0, 151197304618SKris Buschelman 0, 151297304618SKris Buschelman 0, 15135bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1514d519adbfSMatthew Knepley /* 84*/ 0, 1515865e5f61SKris Buschelman 0, 1516865e5f61SKris Buschelman 0, 1517865e5f61SKris Buschelman 0, 1518865e5f61SKris Buschelman 0, 1519d519adbfSMatthew Knepley /* 89*/ 0, 1520865e5f61SKris Buschelman 0, 1521865e5f61SKris Buschelman 0, 1522865e5f61SKris Buschelman 0, 1523865e5f61SKris Buschelman 0, 1524d519adbfSMatthew Knepley /* 94*/ 0, 1525865e5f61SKris Buschelman 0, 1526865e5f61SKris Buschelman 0, 152799cafbc1SBarry Smith 0, 152899cafbc1SBarry Smith 0, 1529d519adbfSMatthew Knepley /* 99*/ 0, 153099cafbc1SBarry Smith 0, 153199cafbc1SBarry Smith 0, 153299cafbc1SBarry Smith 0, 153399cafbc1SBarry Smith 0, 1534d519adbfSMatthew Knepley /*104*/ 0, 153599cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1536d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1537d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 153895936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 153995936485SShri Abhyankar /*109*/ 0, 154095936485SShri Abhyankar 0, 154195936485SShri Abhyankar 0, 154295936485SShri Abhyankar 0, 154395936485SShri Abhyankar 0, 154495936485SShri Abhyankar /*114*/ 0, 154595936485SShri Abhyankar 0, 154695936485SShri Abhyankar 0, 154795936485SShri Abhyankar 0, 154895936485SShri Abhyankar 0, 154995936485SShri Abhyankar /*119*/ 0, 155095936485SShri Abhyankar 0, 155195936485SShri Abhyankar 0, 15523964eb88SJed Brown 0, 15533964eb88SJed Brown 0, 15543964eb88SJed Brown /*124*/ 0, 15553964eb88SJed Brown 0, 15563964eb88SJed Brown 0, 15573964eb88SJed Brown 0, 15583964eb88SJed Brown 0, 15593964eb88SJed Brown /*129*/ 0, 15603964eb88SJed Brown 0, 15613964eb88SJed Brown 0, 15623964eb88SJed Brown 0, 15633964eb88SJed Brown 0, 15643964eb88SJed Brown /*134*/ 0, 15653964eb88SJed Brown 0, 15663964eb88SJed Brown 0, 15673964eb88SJed Brown 0, 15683964eb88SJed Brown 0, 15693964eb88SJed Brown /*139*/ 0, 1570f9426fe0SMark Adams 0, 15715bba2384SShri Abhyankar 0 157299cafbc1SBarry Smith }; 1573a30f8f8cSSatish Balay 1574a30f8f8cSSatish Balay 15754a2ae208SSatish Balay #undef __FUNCT__ 15764a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 157711bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1578a30f8f8cSSatish Balay { 1579a30f8f8cSSatish Balay PetscFunctionBegin; 1580a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1581a30f8f8cSSatish Balay PetscFunctionReturn(0); 1582a30f8f8cSSatish Balay } 1583a30f8f8cSSatish Balay 15844a2ae208SSatish Balay #undef __FUNCT__ 1585a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1586b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1587a23d5eceSKris Buschelman { 1588a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1589dfbe8321SBarry Smith PetscErrorCode ierr; 1590535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1591a23d5eceSKris Buschelman 1592a23d5eceSKris Buschelman PetscFunctionBegin; 159333d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 159426283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 159526283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1596e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1597899cda47SBarry Smith 1598a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1599d0f46423SBarry Smith mbs = B->rmap->n/bs; 1600d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1601c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1602a23d5eceSKris Buschelman 1603d0f46423SBarry Smith B->rmap->bs = bs; 1604a23d5eceSKris Buschelman b->bs2 = bs*bs; 1605a23d5eceSKris Buschelman b->mbs = mbs; 1606a23d5eceSKris Buschelman b->nbs = mbs; 1607a23d5eceSKris Buschelman b->Mbs = Mbs; 1608a23d5eceSKris Buschelman b->Nbs = Mbs; 1609a23d5eceSKris Buschelman 1610a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1611d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1612a23d5eceSKris Buschelman } 1613d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1614d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1615a23d5eceSKris Buschelman 1616d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1617d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1618a23d5eceSKris Buschelman 1619526dfc15SBarry Smith if (!B->preallocated) { 1620f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1621d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16229c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 16233bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1624f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1625d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16264aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 16273bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1628ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1629526dfc15SBarry Smith } 1630a23d5eceSKris Buschelman 1631526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1632526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 163326fbe8dcSKarl Rupp 1634526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1635a23d5eceSKris Buschelman PetscFunctionReturn(0); 1636a23d5eceSKris Buschelman } 1637a23d5eceSKris Buschelman 1638dfb205c3SBarry Smith #undef __FUNCT__ 1639dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1640dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1641dfb205c3SBarry Smith { 1642dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1643dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1644dfb205c3SBarry Smith const PetscInt *JJ =0; 1645dfb205c3SBarry Smith PetscScalar *values=0; 1646dfb205c3SBarry Smith PetscErrorCode ierr; 1647dfb205c3SBarry Smith 1648dfb205c3SBarry Smith PetscFunctionBegin; 1649ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1650dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1651dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1652dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1653dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1654e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1655dfb205c3SBarry Smith m = B->rmap->n/bs; 1656dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1657dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1658dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1659dfb205c3SBarry Smith 1660dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1661dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1662dfb205c3SBarry Smith for (i=0; i<m; i++) { 1663dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1664dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1665dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1666dfb205c3SBarry Smith JJ = jj + ii[i]; 1667dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1668dfb205c3SBarry Smith if (*JJ >= cstart) break; 1669dfb205c3SBarry Smith JJ++; 1670dfb205c3SBarry Smith } 1671dfb205c3SBarry Smith d = 0; 1672dfb205c3SBarry Smith for (; j<nz; j++) { 1673dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1674dfb205c3SBarry Smith d++; 1675dfb205c3SBarry Smith } 1676dfb205c3SBarry Smith d_nnz[i] = d; 1677dfb205c3SBarry Smith o_nnz[i] = nz - d; 1678dfb205c3SBarry Smith } 1679dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1680dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1681dfb205c3SBarry Smith 1682dfb205c3SBarry Smith values = (PetscScalar*)V; 1683dfb205c3SBarry Smith if (!values) { 1684785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1685dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1686dfb205c3SBarry Smith } 1687dfb205c3SBarry Smith for (i=0; i<m; i++) { 1688dfb205c3SBarry Smith PetscInt row = i + rstart; 1689dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1690dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1691dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1692dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1693dfb205c3SBarry Smith } 1694dfb205c3SBarry Smith 1695dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1696dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1697dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16987827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1699dfb205c3SBarry Smith PetscFunctionReturn(0); 1700dfb205c3SBarry Smith } 1701dfb205c3SBarry Smith 1702611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 17038cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1704611f576cSBarry Smith #endif 1705b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 17068cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1707b5e56a35SBarry Smith #endif 17085c9eb25fSBarry Smith 17090bad9183SKris Buschelman /*MC 1710fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1711828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1712828413b8SBarry Smith the matrix is stored. 1713828413b8SBarry Smith 1714828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1715828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17160bad9183SKris Buschelman 17170bad9183SKris Buschelman Options Database Keys: 17180bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17190bad9183SKris Buschelman 17200bad9183SKris Buschelman Level: beginner 17210bad9183SKris Buschelman 17220bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17230bad9183SKris Buschelman M*/ 17240bad9183SKris Buschelman 17258cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1726aa5a9175SDahai Guo 1727a23d5eceSKris Buschelman #undef __FUNCT__ 17284a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17298cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1730b5df2d14SHong Zhang { 1731b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1732dfbe8321SBarry Smith PetscErrorCode ierr; 1733ace3abfcSBarry Smith PetscBool flg; 1734b5df2d14SHong Zhang 1735b5df2d14SHong Zhang PetscFunctionBegin; 1736b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1737b0a32e0cSBarry Smith B->data = (void*)b; 1738b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1739b5df2d14SHong Zhang 1740b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1741b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1742b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1743b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 174426fbe8dcSKarl Rupp 1745ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1746ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1747b5df2d14SHong Zhang 1748b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1749785e854fSJed Brown ierr = PetscMalloc1((b->size+2),&b->rangebs);CHKERRQ(ierr); 1750b5df2d14SHong Zhang 1751b5df2d14SHong Zhang /* build cache for off array entries formed */ 1752ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 175326fbe8dcSKarl Rupp 1754b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 17550298fd71SBarry Smith b->colmap = NULL; 17560298fd71SBarry Smith b->garray = NULL; 1757b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1758b5df2d14SHong Zhang 1759b5df2d14SHong Zhang /* stuff used in block assembly */ 1760b5df2d14SHong Zhang b->barray = 0; 1761b5df2d14SHong Zhang 1762b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1763b5df2d14SHong Zhang b->lvec = 0; 1764b5df2d14SHong Zhang b->Mvctx = 0; 176540781036SHong Zhang b->slvec0 = 0; 176640781036SHong Zhang b->slvec0b = 0; 176740781036SHong Zhang b->slvec1 = 0; 176840781036SHong Zhang b->slvec1a = 0; 176940781036SHong Zhang b->slvec1b = 0; 177040781036SHong Zhang b->sMvctx = 0; 1771b5df2d14SHong Zhang 1772b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1773b5df2d14SHong Zhang b->rowindices = 0; 1774b5df2d14SHong Zhang b->rowvalues = 0; 1775b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1776b5df2d14SHong Zhang 1777b5df2d14SHong Zhang /* hash table stuff */ 1778b5df2d14SHong Zhang b->ht = 0; 1779b5df2d14SHong Zhang b->hd = 0; 1780b5df2d14SHong Zhang b->ht_size = 0; 1781b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1782b5df2d14SHong Zhang b->ht_fact = 0; 1783b5df2d14SHong Zhang b->ht_total_ct = 0; 1784b5df2d14SHong Zhang b->ht_insert_ct = 0; 1785b5df2d14SHong Zhang 17867a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 17877a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 17887a868f3eSHong Zhang 178959ffdab8SBarry Smith b->in_loc = 0; 179059ffdab8SBarry Smith b->v_loc = 0; 179159ffdab8SBarry Smith b->n_loc = 0; 1792ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17930298fd71SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr); 1794b5df2d14SHong Zhang if (flg) { 1795f6275e2eSBarry Smith PetscReal fact = 1.39; 17964e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17970298fd71SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 1798b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1799b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 18001e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1801b5df2d14SHong Zhang } 18028c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 18038c07d4e3SBarry Smith 1804b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1805bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1806b5e56a35SBarry Smith #endif 1807611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1808bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1809611f576cSBarry Smith #endif 1810bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1811bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1812bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1813bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1814bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1815bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1816aa5a9175SDahai Guo 181723ce1328SBarry Smith B->symmetric = PETSC_TRUE; 181823ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 181923ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 182023ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 182126fbe8dcSKarl Rupp 182217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1823b5df2d14SHong Zhang PetscFunctionReturn(0); 1824b5df2d14SHong Zhang } 1825b5df2d14SHong Zhang 1826209238afSKris Buschelman /*MC 1827002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1828209238afSKris Buschelman 1829209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1830209238afSKris Buschelman and MATMPISBAIJ otherwise. 1831209238afSKris Buschelman 1832209238afSKris Buschelman Options Database Keys: 1833209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1834209238afSKris Buschelman 1835209238afSKris Buschelman Level: beginner 1836209238afSKris Buschelman 1837209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1838209238afSKris Buschelman M*/ 1839209238afSKris Buschelman 18404a2ae208SSatish Balay #undef __FUNCT__ 18414a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1842b5df2d14SHong Zhang /*@C 1843b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1844b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1845b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1846b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang Collective on Mat 1849b5df2d14SHong Zhang 1850b5df2d14SHong Zhang Input Parameters: 1851b5df2d14SHong Zhang + A - the matrix 1852b5df2d14SHong Zhang . bs - size of blockk 1853b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1854b5df2d14SHong Zhang submatrix (same for all local rows) 1855b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18566d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18570298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 185895742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1859b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1860b5df2d14SHong Zhang submatrix (same for all local rows). 1861b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1862c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 18630298fd71SBarry Smith (possibly different for each block row) or NULL. 1864b5df2d14SHong Zhang 1865b5df2d14SHong Zhang 1866b5df2d14SHong Zhang Options Database Keys: 1867b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1868b5df2d14SHong Zhang block calculations (much slower) 1869b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1870b5df2d14SHong Zhang 1871b5df2d14SHong Zhang Notes: 1872b5df2d14SHong Zhang 1873b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1874b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1875b5df2d14SHong Zhang 187649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187749a6f317SBarry Smith 1878b5df2d14SHong Zhang Storage Information: 1879b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1880b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1881b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1882b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1883b5df2d14SHong Zhang 1884b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1885b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 18860298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1887b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1888b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1889b5df2d14SHong Zhang 1890aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1891aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1892aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1893aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1894aa95bbe8SBarry Smith 1895b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1896b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1897b5df2d14SHong Zhang 1898b5df2d14SHong Zhang .vb 1899b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1900a4b1a0f6SJed Brown -------------------------- 1901c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 1902c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 1903c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 1904a4b1a0f6SJed Brown -------------------------- 1905b5df2d14SHong Zhang .ve 1906b5df2d14SHong Zhang 1907b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1908b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19096d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19106d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1911b5df2d14SHong Zhang 19126d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19136d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1914c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1915c2fc9fa9SBarry Smith 1916b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1917b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1918b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1919b5df2d14SHong Zhang matrices. 1920b5df2d14SHong Zhang 1921b5df2d14SHong Zhang Level: intermediate 1922b5df2d14SHong Zhang 1923b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1924b5df2d14SHong Zhang 1925ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 1926b5df2d14SHong Zhang @*/ 19277087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1928b5df2d14SHong Zhang { 19294ac538c5SBarry Smith PetscErrorCode ierr; 1930b5df2d14SHong Zhang 1931b5df2d14SHong Zhang PetscFunctionBegin; 19326ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19336ba663aaSJed Brown PetscValidType(B,1); 19346ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19354ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1936b5df2d14SHong Zhang PetscFunctionReturn(0); 1937b5df2d14SHong Zhang } 1938b5df2d14SHong Zhang 19394a2ae208SSatish Balay #undef __FUNCT__ 194069b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 1941a30f8f8cSSatish Balay /*@C 194269b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1943a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1944a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1945a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1946a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1947a30f8f8cSSatish Balay 1948a30f8f8cSSatish Balay Collective on MPI_Comm 1949a30f8f8cSSatish Balay 1950a30f8f8cSSatish Balay Input Parameters: 1951a30f8f8cSSatish Balay + comm - MPI communicator 1952a30f8f8cSSatish Balay . bs - size of blockk 1953a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1954a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1955a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1956a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1957a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1958a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1959a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1960a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1961a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1962a30f8f8cSSatish Balay submatrix (same for all local rows) 1963a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19646d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19650298fd71SBarry Smith (possibly different for each block block row) or NULL. 196695742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 196795742e49SBarry Smith set its value even if it is zero. 1968a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1969a30f8f8cSSatish Balay submatrix (same for all local rows). 1970a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1971a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 19720298fd71SBarry Smith each block row) or NULL. 1973a30f8f8cSSatish Balay 1974a30f8f8cSSatish Balay Output Parameter: 1975a30f8f8cSSatish Balay . A - the matrix 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay Options Database Keys: 1978a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1979a30f8f8cSSatish Balay block calculations (much slower) 1980a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1981a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1982a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1983a30f8f8cSSatish Balay 1984175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1985ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1986175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1987175b88e8SBarry Smith 1988a30f8f8cSSatish Balay Notes: 1989d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19906d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1991d1be2dadSMatthew Knepley 1992a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1993a30f8f8cSSatish Balay (possibly both). 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1996a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1997a30f8f8cSSatish Balay 199849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 199949a6f317SBarry Smith 2000a30f8f8cSSatish Balay Storage Information: 2001a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2002a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2003a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2004a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2005a30f8f8cSSatish Balay 2006a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2007a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 20080298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2009a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2010a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2011a30f8f8cSSatish Balay 2012a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2013a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2014a30f8f8cSSatish Balay 2015a30f8f8cSSatish Balay .vb 2016a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2017a4b1a0f6SJed Brown -------------------------- 2018c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2019c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2020c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2021a4b1a0f6SJed Brown -------------------------- 2022a30f8f8cSSatish Balay .ve 2023a30f8f8cSSatish Balay 2024a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2025a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20266d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20276d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2028a30f8f8cSSatish Balay 20296d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20306d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2031a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2032a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2033a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2034a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2035a30f8f8cSSatish Balay matrices. 2036a30f8f8cSSatish Balay 2037a30f8f8cSSatish Balay Level: intermediate 2038a30f8f8cSSatish Balay 2039a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2040a30f8f8cSSatish Balay 204169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2042a30f8f8cSSatish Balay @*/ 2043a30f8f8cSSatish Balay 204469b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2045a30f8f8cSSatish Balay { 20466849ba73SBarry Smith PetscErrorCode ierr; 20471302d50aSBarry Smith PetscMPIInt size; 2048a30f8f8cSSatish Balay 2049a30f8f8cSSatish Balay PetscFunctionBegin; 2050f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2051f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2052273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2053273d9f13SBarry Smith if (size > 1) { 2054b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2055b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2056273d9f13SBarry Smith } else { 2057273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2058273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2059273d9f13SBarry Smith } 2060a30f8f8cSSatish Balay PetscFunctionReturn(0); 2061a30f8f8cSSatish Balay } 2062a30f8f8cSSatish Balay 2063a30f8f8cSSatish Balay 20644a2ae208SSatish Balay #undef __FUNCT__ 20654a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20666849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2067a30f8f8cSSatish Balay { 2068a30f8f8cSSatish Balay Mat mat; 2069a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2070dfbe8321SBarry Smith PetscErrorCode ierr; 2071d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2072387bc808SHong Zhang PetscScalar *array; 2073a30f8f8cSSatish Balay 2074a30f8f8cSSatish Balay PetscFunctionBegin; 2075a30f8f8cSSatish Balay *newmat = 0; 207626fbe8dcSKarl Rupp 2077ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2078d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20797adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20801d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 20811e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 20821e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2083e1b6402fSHong Zhang 2084d5f3da31SBarry Smith mat->factortype = matin->factortype; 2085273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 208682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20877fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20887fff6886SHong Zhang 2089b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2090a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2091a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2092a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2093a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2094a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2095a30f8f8cSSatish Balay 2096899cda47SBarry Smith 2097a30f8f8cSSatish Balay a->size = oldmat->size; 2098a30f8f8cSSatish Balay a->rank = oldmat->rank; 2099a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2100a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2101a30f8f8cSSatish Balay a->rowindices = 0; 2102a30f8f8cSSatish Balay a->rowvalues = 0; 2103a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2104a30f8f8cSSatish Balay a->barray = 0; 2105899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2106899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2107899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2108899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2109a30f8f8cSSatish Balay 2110a30f8f8cSSatish Balay /* hash table stuff */ 2111a30f8f8cSSatish Balay a->ht = 0; 2112a30f8f8cSSatish Balay a->hd = 0; 2113a30f8f8cSSatish Balay a->ht_size = 0; 2114a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2115a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2116a30f8f8cSSatish Balay a->ht_total_ct = 0; 2117a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2118a30f8f8cSSatish Balay 2119899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2120a30f8f8cSSatish Balay if (oldmat->colmap) { 2121a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2122a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2123a30f8f8cSSatish Balay #else 2124785e854fSJed Brown ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr); 21253bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21261302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2127a30f8f8cSSatish Balay #endif 2128a30f8f8cSSatish Balay } else a->colmap = 0; 2129387bc808SHong Zhang 2130a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2131785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 21323bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21331302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2134a30f8f8cSSatish Balay } else a->garray = 0; 2135a30f8f8cSSatish Balay 2136ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2137a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 21383bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2139a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 21403bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 214182327fa8SHong Zhang 214282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 21433bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 214482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 21453bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2146387bc808SHong Zhang 2147387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21481ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2149778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2150778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21511ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21521ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2153778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21541ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 21553bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 21563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 21573bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 21583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 21593bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2160387bc808SHong Zhang 2161387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2162387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2163387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 21643bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 216582327fa8SHong Zhang 2166a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 21673bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2168a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 21693bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2170140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2171a30f8f8cSSatish Balay *newmat = mat; 2172a30f8f8cSSatish Balay PetscFunctionReturn(0); 2173a30f8f8cSSatish Balay } 2174a30f8f8cSSatish Balay 21754a2ae208SSatish Balay #undef __FUNCT__ 21765bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2177112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 217895936485SShri Abhyankar { 217995936485SShri Abhyankar PetscErrorCode ierr; 218095936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 218195936485SShri Abhyankar PetscScalar *vals,*buf; 2182ce94432eSBarry Smith MPI_Comm comm; 218395936485SShri Abhyankar MPI_Status status; 2184adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2185adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 218695936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 218795936485SShri Abhyankar PetscInt bs =1,Mbs,mbs,extra_rows; 218895936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 218995936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 219095936485SShri Abhyankar int fd; 219195936485SShri Abhyankar 219295936485SShri Abhyankar PetscFunctionBegin; 2193ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 21940298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21950298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 219695936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 219795936485SShri Abhyankar 219895936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 219995936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 220095936485SShri Abhyankar if (!rank) { 220195936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 220295936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 220395936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 220495936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 220595936485SShri Abhyankar } 220695936485SShri Abhyankar 220795936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 220895936485SShri Abhyankar 220995936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 221026fbe8dcSKarl Rupp M = header[1]; 221126fbe8dcSKarl Rupp N = header[2]; 221295936485SShri Abhyankar 221395936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 221495936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 221595936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 221695936485SShri Abhyankar 221795936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 221895936485SShri Abhyankar if (sizesset) { 221995936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 222095936485SShri Abhyankar } 2221abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2222abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 222395936485SShri Abhyankar 222495936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 222595936485SShri Abhyankar 222695936485SShri Abhyankar /* 222795936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 222895936485SShri Abhyankar divisible by the blocksize 222995936485SShri Abhyankar */ 223095936485SShri Abhyankar Mbs = M/bs; 223195936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 223295936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 223395936485SShri Abhyankar else Mbs++; 223495936485SShri Abhyankar if (extra_rows &&!rank) { 223595936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 223695936485SShri Abhyankar } 223795936485SShri Abhyankar 223895936485SShri Abhyankar /* determine ownership of all rows */ 223995936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 224095936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 224195936485SShri Abhyankar m = mbs*bs; 224295936485SShri Abhyankar } else { /* User Set */ 224395936485SShri Abhyankar m = newmat->rmap->n; 224495936485SShri Abhyankar mbs = m/bs; 224595936485SShri Abhyankar } 2246dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 22474dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 224895936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 224995936485SShri Abhyankar rowners[0] = 0; 225095936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 225195936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 225295936485SShri Abhyankar rstart = rowners[rank]; 225395936485SShri Abhyankar rend = rowners[rank+1]; 225495936485SShri Abhyankar 225595936485SShri Abhyankar /* distribute row lengths to all processors */ 2256785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 225795936485SShri Abhyankar if (!rank) { 2258785e854fSJed Brown ierr = PetscMalloc1((M+extra_rows),&rowlengths);CHKERRQ(ierr); 225995936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 226095936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2261785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 226295936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 226395936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 226495936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 226595936485SShri Abhyankar } else { 226695936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 226795936485SShri Abhyankar } 226895936485SShri Abhyankar 226995936485SShri Abhyankar if (!rank) { /* procs[0] */ 227095936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2271785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 227295936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 227395936485SShri Abhyankar for (i=0; i<size; i++) { 227495936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 227595936485SShri Abhyankar procsnz[i] += rowlengths[j]; 227695936485SShri Abhyankar } 227795936485SShri Abhyankar } 227895936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 227995936485SShri Abhyankar 228095936485SShri Abhyankar /* determine max buffer needed and allocate it */ 228195936485SShri Abhyankar maxnz = 0; 228295936485SShri Abhyankar for (i=0; i<size; i++) { 228395936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 228495936485SShri Abhyankar } 2285785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 228695936485SShri Abhyankar 228795936485SShri Abhyankar /* read in my part of the matrix column indices */ 228895936485SShri Abhyankar nz = procsnz[0]; 2289785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 229095936485SShri Abhyankar mycols = ibuf; 229195936485SShri Abhyankar if (size == 1) nz -= extra_rows; 229295936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 229326fbe8dcSKarl Rupp if (size == 1) { 229426fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 229526fbe8dcSKarl Rupp } 229695936485SShri Abhyankar 229795936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 229895936485SShri Abhyankar for (i=1; i<size-1; i++) { 229995936485SShri Abhyankar nz = procsnz[i]; 230095936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 230195936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 230295936485SShri Abhyankar } 230395936485SShri Abhyankar /* read in the stuff for the last proc */ 230495936485SShri Abhyankar if (size != 1) { 230595936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 230695936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 230795936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 230895936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 230995936485SShri Abhyankar } 231095936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 231195936485SShri Abhyankar } else { /* procs[i], i>0 */ 231295936485SShri Abhyankar /* determine buffer space needed for message */ 231395936485SShri Abhyankar nz = 0; 231426fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2315785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 231695936485SShri Abhyankar mycols = ibuf; 231795936485SShri Abhyankar /* receive message of column indices*/ 231895936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 231995936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 232095936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 232195936485SShri Abhyankar } 232295936485SShri Abhyankar 232395936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2324dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2325dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 232695936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232795936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232895936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232995936485SShri Abhyankar rowcount = 0; 233095936485SShri Abhyankar nzcount = 0; 233195936485SShri Abhyankar for (i=0; i<mbs; i++) { 233295936485SShri Abhyankar dcount = 0; 233395936485SShri Abhyankar odcount = 0; 233495936485SShri Abhyankar for (j=0; j<bs; j++) { 233595936485SShri Abhyankar kmax = locrowlens[rowcount]; 233695936485SShri Abhyankar for (k=0; k<kmax; k++) { 233795936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 233895936485SShri Abhyankar if (!mask[tmp]) { 233995936485SShri Abhyankar mask[tmp] = 1; 234095936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 234195936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 234295936485SShri Abhyankar } 234395936485SShri Abhyankar } 234495936485SShri Abhyankar rowcount++; 234595936485SShri Abhyankar } 234695936485SShri Abhyankar 234795936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 234895936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 234995936485SShri Abhyankar 235095936485SShri Abhyankar /* zero out the mask elements we set */ 235195936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 235295936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 235395936485SShri Abhyankar } 235495936485SShri Abhyankar if (!sizesset) { 235595936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 235695936485SShri Abhyankar } 235795936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 23586816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 235995936485SShri Abhyankar 236095936485SShri Abhyankar if (!rank) { 2361785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 236295936485SShri Abhyankar /* read in my part of the matrix numerical values */ 236395936485SShri Abhyankar nz = procsnz[0]; 236495936485SShri Abhyankar vals = buf; 236595936485SShri Abhyankar mycols = ibuf; 236695936485SShri Abhyankar if (size == 1) nz -= extra_rows; 236795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 236826fbe8dcSKarl Rupp if (size == 1) { 236926fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 237026fbe8dcSKarl Rupp } 237195936485SShri Abhyankar 237295936485SShri Abhyankar /* insert into matrix */ 237395936485SShri Abhyankar jj = rstart*bs; 237495936485SShri Abhyankar for (i=0; i<m; i++) { 237595936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 237695936485SShri Abhyankar mycols += locrowlens[i]; 237795936485SShri Abhyankar vals += locrowlens[i]; 237895936485SShri Abhyankar jj++; 237995936485SShri Abhyankar } 238095936485SShri Abhyankar 238195936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 238295936485SShri Abhyankar for (i=1; i<size-1; i++) { 238395936485SShri Abhyankar nz = procsnz[i]; 238495936485SShri Abhyankar vals = buf; 238595936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238695936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 238795936485SShri Abhyankar } 238895936485SShri Abhyankar /* the last proc */ 238995936485SShri Abhyankar if (size != 1) { 239095936485SShri Abhyankar nz = procsnz[i] - extra_rows; 239195936485SShri Abhyankar vals = buf; 239295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 239395936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 239495936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 239595936485SShri Abhyankar } 239695936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 239795936485SShri Abhyankar 239895936485SShri Abhyankar } else { 239995936485SShri Abhyankar /* receive numeric values */ 2400785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 240195936485SShri Abhyankar 240295936485SShri Abhyankar /* receive message of values*/ 240395936485SShri Abhyankar vals = buf; 240495936485SShri Abhyankar mycols = ibuf; 240595936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 240695936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 240795936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 240895936485SShri Abhyankar 240995936485SShri Abhyankar /* insert into matrix */ 241095936485SShri Abhyankar jj = rstart*bs; 241195936485SShri Abhyankar for (i=0; i<m; i++) { 241295936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 241395936485SShri Abhyankar mycols += locrowlens[i]; 241495936485SShri Abhyankar vals += locrowlens[i]; 241595936485SShri Abhyankar jj++; 241695936485SShri Abhyankar } 241795936485SShri Abhyankar } 241895936485SShri Abhyankar 241995936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 242095936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 242195936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 242295936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 242395936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 242495936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 242595936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 242695936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 242795936485SShri Abhyankar PetscFunctionReturn(0); 242895936485SShri Abhyankar } 242995936485SShri Abhyankar 243095936485SShri Abhyankar #undef __FUNCT__ 24314a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2432dcf5cc72SBarry Smith /*XXXXX@ 2433a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2434a30f8f8cSSatish Balay 2435a30f8f8cSSatish Balay Input Parameters: 2436a30f8f8cSSatish Balay . mat - the matrix 2437a30f8f8cSSatish Balay . fact - factor 2438a30f8f8cSSatish Balay 2439c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2440a30f8f8cSSatish Balay 2441a30f8f8cSSatish Balay Level: advanced 2442a30f8f8cSSatish Balay 2443a30f8f8cSSatish Balay Notes: 2444a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2445a30f8f8cSSatish Balay 2446a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2447a30f8f8cSSatish Balay 2448a30f8f8cSSatish Balay .seealso: MatSetOption() 2449dcf5cc72SBarry Smith @XXXXX*/ 2450dcf5cc72SBarry Smith 245124d5174aSHong Zhang 24524a2ae208SSatish Balay #undef __FUNCT__ 2453985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2454985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 245524d5174aSHong Zhang { 245624d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2457f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2458ca54ac64SHong Zhang PetscReal atmp; 245987828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2460dfbe8321SBarry Smith PetscErrorCode ierr; 24611302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24621302d50aSBarry Smith PetscMPIInt rank,size; 24631302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 246487828ca2SBarry Smith PetscScalar *va; 24658a1c53f2SBarry Smith MatScalar *ba; 2466f4c0e9e4SHong Zhang MPI_Status stat; 246724d5174aSHong Zhang 246824d5174aSHong Zhang PetscFunctionBegin; 2469e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 24700298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 24711ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2472f4c0e9e4SHong Zhang 2473ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2474ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2475f4c0e9e4SHong Zhang 2476d0f46423SBarry Smith bs = A->rmap->bs; 2477f4c0e9e4SHong Zhang mbs = a->mbs; 2478f4c0e9e4SHong Zhang Mbs = a->Mbs; 2479f4c0e9e4SHong Zhang ba = b->a; 2480f4c0e9e4SHong Zhang bi = b->i; 2481f4c0e9e4SHong Zhang bj = b->j; 2482f4c0e9e4SHong Zhang 2483f4c0e9e4SHong Zhang /* find ownerships */ 2484d0f46423SBarry Smith rowners_bs = A->rmap->range; 2485f4c0e9e4SHong Zhang 2486f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2487785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2488ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2489f4c0e9e4SHong Zhang 2490f4c0e9e4SHong Zhang /* row_max for B */ 2491b8475685SHong Zhang if (rank != size-1) { 2492f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2493f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2494f4c0e9e4SHong Zhang brow = bs*i; 2495f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2496f4c0e9e4SHong Zhang bcol = bs*(*bj); 2497f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2498ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 249904d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2500f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2501f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2502ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2503ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2504f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2505f4c0e9e4SHong Zhang } 2506f4c0e9e4SHong Zhang } 2507f4c0e9e4SHong Zhang bj++; 2508f4c0e9e4SHong Zhang } 2509f4c0e9e4SHong Zhang } 2510f4c0e9e4SHong Zhang 2511f4c0e9e4SHong Zhang /* send values to its owners */ 2512f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2513f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2514ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2515ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2516ca54ac64SHong Zhang } 2517f4c0e9e4SHong Zhang } 2518f4c0e9e4SHong Zhang 2519f4c0e9e4SHong Zhang /* receive values */ 2520ca54ac64SHong Zhang if (rank) { 2521f4c0e9e4SHong Zhang rvalues = work; 2522ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2523f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2524ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2525f4c0e9e4SHong Zhang /* process values */ 2526f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2527ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2528f4c0e9e4SHong Zhang } 2529f4c0e9e4SHong Zhang } 2530ca54ac64SHong Zhang } 2531f4c0e9e4SHong Zhang 25321ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2533ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 253424d5174aSHong Zhang PetscFunctionReturn(0); 253524d5174aSHong Zhang } 25362798e883SHong Zhang 25372798e883SHong Zhang #undef __FUNCT__ 253841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 253941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25402798e883SHong Zhang { 25412798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2542dfbe8321SBarry Smith PetscErrorCode ierr; 2543d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25443649974fSBarry Smith PetscScalar *x,*ptr,*from; 2545ffe4fb16SHong Zhang Vec bb1; 25463649974fSBarry Smith const PetscScalar *b; 2547ffe4fb16SHong Zhang 2548ffe4fb16SHong Zhang PetscFunctionBegin; 2549e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2550e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2551ffe4fb16SHong Zhang 2552a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 255341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2554a2b30743SBarry Smith PetscFunctionReturn(0); 2555a2b30743SBarry Smith } 2556a2b30743SBarry Smith 2557ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2558ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 255941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2560ffe4fb16SHong Zhang its--; 2561ffe4fb16SHong Zhang } 2562ffe4fb16SHong Zhang 2563ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2564ffe4fb16SHong Zhang while (its--) { 2565ffe4fb16SHong Zhang 2566ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2567ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2568ffe4fb16SHong Zhang 2569ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25701ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25711ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2572ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25731ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2574ffe4fb16SHong Zhang 2575efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2576ffe4fb16SHong Zhang 2577ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25781ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25793649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2580ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25811ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2582ffe4fb16SHong Zhang 2583ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2584fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2585ffe4fb16SHong Zhang 2586ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25871ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2588a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2589ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2590ffe4fb16SHong Zhang 2591ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2592ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2593ffe4fb16SHong Zhang 2594ffe4fb16SHong Zhang /* local diagonal sweep */ 259541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2596ffe4fb16SHong Zhang } 25976bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2598fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 259941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2600fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 260141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2602fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2603fa22f6d0SBarry Smith Vec xx1; 2604ace3abfcSBarry Smith PetscBool hasop; 260520f1ed55SBarry Smith const PetscScalar *diag; 2606887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 260720f1ed55SBarry Smith PetscInt i,n; 2608fa22f6d0SBarry Smith 2609fa22f6d0SBarry Smith if (!mat->xx1) { 2610fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2611fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2612fa22f6d0SBarry Smith } 2613fa22f6d0SBarry Smith xx1 = mat->xx1; 2614fa22f6d0SBarry Smith bb1 = mat->bb1; 2615fa22f6d0SBarry Smith 261641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2617fa22f6d0SBarry Smith 2618fa22f6d0SBarry Smith if (!mat->diag) { 2619effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26200298fd71SBarry Smith ierr = MatGetVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2621fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2622fa22f6d0SBarry Smith } 2623fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2624fa22f6d0SBarry Smith 2625fa22f6d0SBarry Smith if (hasop) { 2626fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2627887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 262820f1ed55SBarry Smith } else { 262920f1ed55SBarry Smith /* 263020f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 263120f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2632887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 263320f1ed55SBarry Smith */ 263420f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26353649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26363649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 263720f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 263820f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2639887ee2caSBarry Smith if (omega == 1.0) { 264026fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 264120f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2642887ee2caSBarry Smith } else { 264326fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2644887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2645887ee2caSBarry Smith } 264620f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26473649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26483649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 264920f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 265020f1ed55SBarry Smith } 2651fa22f6d0SBarry Smith 2652fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2653fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2654fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2655fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2656fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2657fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2658fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2659fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2660fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2661fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2662effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2663fa22f6d0SBarry Smith 2664fa22f6d0SBarry Smith /* local sweep */ 266541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2666fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2667f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2668ffe4fb16SHong Zhang PetscFunctionReturn(0); 2669ffe4fb16SHong Zhang } 2670ffe4fb16SHong Zhang 2671ffe4fb16SHong Zhang #undef __FUNCT__ 267241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 267341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2674ffe4fb16SHong Zhang { 2675ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2676dfbe8321SBarry Smith PetscErrorCode ierr; 26772798e883SHong Zhang Vec lvec1,bb1; 26782798e883SHong Zhang 26792798e883SHong Zhang PetscFunctionBegin; 2680e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2681e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26822798e883SHong Zhang 2683c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 26842798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 268541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26862798e883SHong Zhang its--; 26872798e883SHong Zhang } 26882798e883SHong Zhang 26892798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26902798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26912798e883SHong Zhang while (its--) { 2692ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26932798e883SHong Zhang 26942798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26952798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2696efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26972798e883SHong Zhang 2698ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26992798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2700ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27012798e883SHong Zhang 27022798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2703efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 27042798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27052798e883SHong Zhang 2706ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27072798e883SHong Zhang 2708c14dc6b6SHong Zhang /* diagonal sweep */ 270941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27102798e883SHong Zhang } 27116bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27126bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27136bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27142798e883SHong Zhang PetscFunctionReturn(0); 27152798e883SHong Zhang } 27162798e883SHong Zhang 2717dfb205c3SBarry Smith #undef __FUNCT__ 2718dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2719dfb205c3SBarry Smith /*@ 2720dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2721dfb205c3SBarry Smith CSR format the local rows. 2722dfb205c3SBarry Smith 2723dfb205c3SBarry Smith Collective on MPI_Comm 2724dfb205c3SBarry Smith 2725dfb205c3SBarry Smith Input Parameters: 2726dfb205c3SBarry Smith + comm - MPI communicator 2727dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2728dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2729dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2730dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2731dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2732dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2733dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2734dfb205c3SBarry Smith . i - row indices 2735dfb205c3SBarry Smith . j - column indices 2736dfb205c3SBarry Smith - a - matrix values 2737dfb205c3SBarry Smith 2738dfb205c3SBarry Smith Output Parameter: 2739dfb205c3SBarry Smith . mat - the matrix 2740dfb205c3SBarry Smith 2741dfb205c3SBarry Smith Level: intermediate 2742dfb205c3SBarry Smith 2743dfb205c3SBarry Smith Notes: 2744dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2745dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2746dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2747dfb205c3SBarry Smith 2748dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2749dfb205c3SBarry Smith 2750dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2751dfb205c3SBarry Smith 2752dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 275369b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2754dfb205c3SBarry Smith @*/ 27557087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2756dfb205c3SBarry Smith { 2757dfb205c3SBarry Smith PetscErrorCode ierr; 2758dfb205c3SBarry Smith 2759dfb205c3SBarry Smith 2760dfb205c3SBarry Smith PetscFunctionBegin; 2761f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2762dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2763dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2764dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2765dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2766dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2767dfb205c3SBarry Smith PetscFunctionReturn(0); 2768dfb205c3SBarry Smith } 2769dfb205c3SBarry Smith 2770dfb205c3SBarry Smith 2771dfb205c3SBarry Smith #undef __FUNCT__ 2772dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2773dfb205c3SBarry Smith /*@C 2774dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2775dfb205c3SBarry Smith (the default parallel PETSc format). 2776dfb205c3SBarry Smith 2777dfb205c3SBarry Smith Collective on MPI_Comm 2778dfb205c3SBarry Smith 2779dfb205c3SBarry Smith Input Parameters: 2780dfb205c3SBarry Smith + A - the matrix 2781dfb205c3SBarry Smith . bs - the block size 2782dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2783dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2784dfb205c3SBarry Smith - v - optional values in the matrix 2785dfb205c3SBarry Smith 2786dfb205c3SBarry Smith Level: developer 2787dfb205c3SBarry Smith 2788dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2789dfb205c3SBarry Smith 279069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2791dfb205c3SBarry Smith @*/ 27927087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2793dfb205c3SBarry Smith { 27944ac538c5SBarry Smith PetscErrorCode ierr; 2795dfb205c3SBarry Smith 2796dfb205c3SBarry Smith PetscFunctionBegin; 27974ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2798dfb205c3SBarry Smith PetscFunctionReturn(0); 2799dfb205c3SBarry Smith } 2800dfb205c3SBarry Smith 2801dfb205c3SBarry Smith 2802